Citrus Sinensis ID: 047631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230--
MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVDGGHGSDSSSGNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTKEDSQVDELQGSVVDTEANLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMRPRGSGFSRRGREPISPGKGGSFSNDSLSGTRNYSGGIKDLTRNISNKGFSNKGDDLVGGGEIVNESLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSESISRAVAEKSPASASTGVTQSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDISLSQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHGTPGSSGQSGGTPSLELPKQYRDGWASETNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVGKQSPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPASSSVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAARPEMMAPSPKPVTGAQGWGSASSQKLEPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPVSGQSGMPASDSWRAPVPSQSNVQSPAQPITPWGMGVAGNQSAVPRQVPESQNTGWGQMPANPSMGWGGQLPASTNMNWGAPAQGQAPGNAHSGWAGPAQGQAHKNAVPGWAPPGQGPSPVNANTGWVAPGQGPPPGNGNPGWGAPAGNPGMWGSDQNNGGDRFSNQRDRGSHGGDSGYGGGRPWNRQPSFGSRGGDSSRPHFNKGQRVCKFHESGHCKKGSQCDYLHT
cccccccHHccccccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccHHHHccccccHHHcccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHccccccccccEEEEEEEEEccccccccccEEEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHHHHccccHHHHHHHHcHcccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccEEEEHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccHcccccccccccccccccccccccccccccccccHHHEEEEcHHHccHEHHHHHHHHHHHHcccHHHHHEEEEEEEEEEccccccccccEEEEEEEEEEccccccEccccccEEEEEEEccccccEEEEEEEccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccHcccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccc
mcytctfslckgctkDAVILCVrgnkgfceTCMKTVMLIERneqgnketaqvdfddknsweYLFKDYWLDLKVRLSLSSDelaraknpwkgsdthagkqsspdelydanvdgghgsdsssgnaeATVSKRRKAKkrsksrakdevspgtvklsggegastdgsVEWASKELLDLVMHMRngdksalsQFDVQTLLLEYIKKyklrdpqrrtHVICDARlqnlfgkprvgHFEMLKLLEShfltkedsqvdelqgsvvdteanlleadgssdalvkggkdkkrktrkkgdhrglqsnvddyaaidmhNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRisgsahqkqDLYRLVQVTgtskgtepykvgkrTTDILLEILNLNKTEVISidiisnqeftEDECKRLRQSIKcglinrltvGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRAsdlgrrkeyplLYEECVEKLQLLKTPEERQRRLEeipeihsdpnmdpsyeseeddgetddkrqdymrprgsgfsrrgrepispgkggsfsndslsgtrnysggikdltrnisnkgfsnkgddlvgggeivneSLWNQARDREteqfnswdkprtalnletgarnnSVVLSESISRAvaekspasastgvtqsapkinesekiwhyqdpsgkvqgpfsmVQLRKwnntgyfpanlriwrsnekqddsiLLTDALagkfhkdprlvdislsqtipysgkshgassqpgmetpvggssnfdqnrtawnqhgtpgssgqsggtpslelpkqyrdgwasetnlpsptptqstageikgktfekewsptpnnqpgslmvtnlfpgnvgkqsppatgletgqspnfstsssasklsvnvdglnithgvtsaskpetvesqrvlvsphqlpasssvvasvnpgvdikSIGANLQTLVQSVsanvtpveshgwgsglaarpemmapspkpvtgaqgwgsassqklepnnpvsipaqspayaqpyastfntgnspgvfpvsgqsgmpasdswrapvpsqsnvqspaqpitpwgmgvagnqsavprqvpesqntgwgqmpanpsmgwggqlpastnmnwgapaqgqapgnahsgwagpaqgqahknavpgwappgqgpspvnantgwvapgqgpppgngnpgwgapagnpgmwgsdqnnggdrfsnqrdrgshggdsgygggrpwnrqpsfgsrggdssrphfnkgqrvckfhesghckkgsqcdylht
mcytctfslckgctkdAVILCVRGNKGFCETCMKTVMLIerneqgnketaqvdfddknSWEYLFKDYWLDLKVRLSLSSDELaraknpwkgsdthagkqsspDELYDANVDGGhgsdsssgnaeatvskrrkakkrsksrakdevspgtvklsggegastdgsvEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKkyklrdpqrrtHVICDARLQNLFGKPRVGHFEMLKLLESHFLTKEDSQVDELQGSVVDTEAnlleadgssdalvkggkdkkrktrkkgdhrglqsnvddyaaIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRisgsahqkqdlyRLVQVtgtskgtepykvgkrttDILLEIlnlnktevisidiisnqefteDECKRLRQSikcglinrltvgdIQEKAMALQEVRVKDWMEAEILRLshlrdrasdlgrrkeypllYEECVEKlqllktpeerQRRLeeipeihsdpnmdpsyeseeddgetddkrqdymrprgsgfsrrgrepispgkggsfsndslsgtrNYSGGIKDLTRNISNKGFSNKGDDLVGGGEIVNESLWNQARDReteqfnswdkprtalnletgarnnSVVLSESISRAvaekspasastgvtqsapkineSEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDISLSQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHGTPGSSGQSGGTPSLELPKQYRDGWASetnlpsptptqstaGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVGKQSPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPASSSVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAARPEMMAPSPKPVTGAQGWGSASSQKLEPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPVSGQSGMPASDSWRAPVPSQSNVQSPAQPITPWGMGVAGNQSAVPRQVPESQNTGWGQMPANPSMGWGGQLPASTNMNWGAPAQGQAPGNAHSGWAGPAQGQAHKNAVPGWAPPGQGPSPVNANTGWVAPGQGPPPGNGNPGWGAPAGNPGMWGSDQNNGGDRFSNQRDRGShggdsgygggrpWNRQPSFGSRGGDSSRPHFNKGQRVCKfhesghckkgsqcdylht
MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVdgghgsdsssgNAEATVskrrkakkrsksrakDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTKEDSQVDELQGSVVDTEANLLEADGSSDALVkggkdkkrktrkkgdhrgLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMrprgsgfsrrgrEPISPGKGGSFSNDSLSGTRNYSGGIKDLTRNISNKGFSNKGDDLVGGGEIVNESLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSESISRAVAEKSPASASTGVTQSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDISLSQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHgtpgssgqsggtpsLELPKQYRDGWASETNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVGKQSPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPasssvvasvNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAARPEMMAPSPKPVTGAQGWGSASSQKLEPNNPVSIpaqspayaqpyasTFNTGNSPGVFPVSGQSGMPASDSWRAPVPSQSNVQSPAQPITPWGMGVAGNQSAVPRQVPESQNTGWGQMPANPSMGWGGQLPASTNMNWgapaqgqapgNAHSGWAGPAQGQAHKNAVPGWAPPGQGPSPVNANTGWVapgqgpppgngnpgwgapagnpgMWGSDQNNGGDRFSNQrdrgshggdsgygggrPWNRQPSFGSRGGDSSRPHFNKGQRVCKFHESGHCKKGSQCDYLHT
*CYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERN*******AQVDFDDKNSWEYLFKDYWLDLKVRLSL****************************************************************************************WASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLT*****************************************************VDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLL****************************************************************************************************VGGGEIVNESLW******************************************************************IWHYQ****KVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDISL***************************************************************************************************************************************************************************************VNPGVDIKSIGANLQTLVQSVSANVT*************************************************************************************************************************************************************************************************************************************************************************************************************
MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKN*******************************************************************************ASKELLDLVM*M*******LS*FDVQTLLLEYI***************CDARLQNLFG***V****M*KLL*****************************************************************IDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRD*******RKEYPLLYEECVE*****************************************************************************************************************************************************************************************************************GYF*********************ALAGKF*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ESGHCKKGSQCDYL**
MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKN**************PDELYDANVDG************************************************DGSVEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTKEDSQVDELQGSVVDTEANLLEADGSSDA*******************GLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTPEERQRRLEEIPEIHSDPNM****************RQDYMRPRGSGFSRRGREPISPGKGGSFSNDSLSGTRNYSGGIKDLTRNISNKGFSNKGDDLVGGGEIVNESLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSES********************APKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDISLSQTIP*****************VGGSSNFDQNRTAWNQ*************PSLELPKQYRDGWASET***********AGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVGKQSP********************KLSVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPASSSVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAARPEMMAP*******************EPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPVSGQ**********************AQPITPWGMGVAGNQSAVPRQVPESQNTGWGQMPANPSMGWGGQLPASTNMNWGAPA*********************KNAVPGWAPPGQGPSPVNANTGWVAPGQGPPPGNGNPGWGAPAGNPGMWGSDQNNGGDRFSNQRDRGSHGGDSGYGGGRPWNRQPS*********RPHFNKGQRVCKFHESGHCKKGSQCDYLHT
MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKNPW**************************************************************************VEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLT**************************************************QSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTPEERQRRLEEIPEIHSD************************************************************************************************************************************************************SEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHK************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FNKGQRVCKFHESGHCKKGSQCD****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVDGGHGSDSSSGNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTKEDSQVDELQGSVVDTEANLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMRPRGSGFSRRGREPISPGKGGSFSNDSLSGTRNYSGGIKDLTRNISNKGFSNKGDDLVGGGEIVNESLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSESISRAVAEKSPASASTGVTQSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDISLSQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHGTPGSSGQSGGTPSLELPKQYRDGWASETNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVGKQSPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPASSSVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAARPEMMAPSPKPVTGAQGWGSASSQKLEPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPVSGQSGMPASDSWRAPVPSQSNVQSPAQPITPWGMGVAGNQSAVPRQVPESQNTGWGQMPANPSMGWGGQLPASTNMNWGAPAQGQAPGNAHSGWAGPAQGQAHKNAVPGWAPPGQGPSPVNANTGWVAPGQGPPPGNGNPGWGAPAGNPGMWGSDQNNGGDRFSNQRDRGSHGGDSGYGGGRPWNRQPSFGSRGGDSSRPHFNKGQRVCKFHESGHCKKGSQCDYLHT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1232 2.2.26 [Sep-21-2011]
Q9SIV51773 Zinc finger CCCH domain-c yes no 0.871 0.605 0.483 0.0
Q9SD341292 Zinc finger CCCH domain-c no no 0.397 0.379 0.500 1e-136
Q9FT92553 Uncharacterized protein A no no 0.258 0.576 0.313 5e-41
A2AQ19715 RNA polymerase-associated yes no 0.084 0.145 0.283 4e-06
Q92541710 RNA polymerase-associated yes no 0.084 0.146 0.283 7e-06
Q5RAD5665 RNA polymerase-associated yes no 0.084 0.156 0.283 8e-06
O94667560 RNA polymerase-associated yes no 0.085 0.187 0.296 1e-05
Q0DVU4707 Zinc finger CCCH domain-c no no 0.063 0.110 0.344 3e-05
Q7KQM6 1574 PERQ amino acid-rich with yes no 0.034 0.026 0.466 6e-05
Q6Y7W6 1299 PERQ amino acid-rich with no no 0.038 0.036 0.375 0.0002
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3 Back     alignment and function desciption
 Score = 1039 bits (2686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1272 (48%), Positives = 767/1272 (60%), Gaps = 198/1272 (15%)

Query: 1    MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW 60
            +CYTC FSLCKGC KDAV  C+RGNKG CETCM+TV LIER +Q  KE AQ+DF+DK SW
Sbjct: 658  LCYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIERKQQ-EKEPAQLDFNDKTSW 716

Query: 61   EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVDGGHGSDSSS 120
            EYLFKDYW+DLK +LSLS +EL +AK P KG +T+A KQ +  E  D   DGG  SDSS 
Sbjct: 717  EYLFKDYWIDLKTQLSLSPEELDQAKRPLKGHETNASKQGTASET-DYVTDGGSDSDSSP 775

Query: 121  GNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRN 180
                    K+RK + RSKS + +++      LS G+   +D ++EWASKELLDLV+HMR 
Sbjct: 776  --------KKRKTRSRSKSGSAEKI------LSSGDKNLSDETMEWASKELLDLVVHMRR 821

Query: 181  GDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESH 240
            GD+S L   +VQTLLL YIK+Y LRDP+R++ VICD+RLQNLFGK  VGHFEML LL+SH
Sbjct: 822  GDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSH 881

Query: 241  FLTKEDSQVDELQGSVVDTEA-NLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDD 299
            FL KE +Q D++QG +VDTE  N ++ D + D  VK GKDKKRKTRKK   +G QSN+DD
Sbjct: 882  FLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRKTRKKNVRKGRQSNLDD 941

Query: 300  YAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTG 359
            +AA+DMHNINLIYLRR+ VE+LLED+  F +KV   F R+RISG  +QKQDLYRLVQV G
Sbjct: 942  FAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRISG--NQKQDLYRLVQVVG 999

Query: 360  TSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRL 419
            TSK  EPYKVGK+TTD +LEILNL+KTEVISIDIISNQ+FTEDECKRL+QSIKCGLINRL
Sbjct: 1000 TSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDECKRLKQSIKCGLINRL 1059

Query: 420  TVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYE----------- 468
            TVGDIQEKA+ALQEVRVK+ +EAEILR SHLRDRASD+GRRKEYP L +           
Sbjct: 1060 TVGDIQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMGRRKEYPYLLKLSNSLTMLTLR 1119

Query: 469  ECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMRPRGSGFS 528
            ECVEKLQLLK+PEERQRRLEEIPEIH+DP MDP  ESE++D + + +++  +RPR S F+
Sbjct: 1120 ECVEKLQLLKSPEERQRRLEEIPEIHADPKMDPDCESEDEDEKEEKEKEKQLRPRSSSFN 1179

Query: 529  RRGREPISPGKGGSFSNDSLSGTRNYS--GGIKDLTRNISNKGFSNKGDDLVGGGEIVNE 586
            RRGR+PISP KGG  SN+S +GT NYS     ++L+R+ S +G + +GD L    + V++
Sbjct: 1180 RRGRDPISPRKGGFSSNESWTGTSNYSNTSANRELSRSYSGRGSTGRGDYLGSSDDKVSD 1239

Query: 587  SLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSESISRAVAEKSPASASTGVTQS 646
            S+W  AR+RE +     +KPR+    ET AR++  +    +S  +A +   +    V+Q 
Sbjct: 1240 SMWTSAREREVQPSLGSEKPRSVSIPETPARSSRAIAPPELSPRIASEISMAPPAVVSQP 1299

Query: 647  APKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDA 706
             PK N+SEKIWHY+DPSGKVQGPFSM QLRKWNNTGYFPA L IW++NE   DS+LLTDA
Sbjct: 1300 VPKSNDSEKIWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDA 1359

Query: 707  LAGKFHKDPRLVDISL--SQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHGTP 764
            LAG F K  + VD S   +Q   +SG+S  + S+P +                       
Sbjct: 1360 LAGLFQKQTQAVDNSYMKAQVAAFSGQS--SQSEPNL----------------------- 1394

Query: 765  GSSGQSGGTPSLELPKQYRDGWASETNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGS 824
            G + +   T ++E+P+  +D W+   +LPSPTP Q T    K + FE  WSPT       
Sbjct: 1395 GFAARIAPT-TIEIPRNSQDTWSQGGSLPSPTPNQITTPTAKRRNFESRWSPT------- 1446

Query: 825  LMVTNLFPGNVGKQSPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETV 884
                        K SP +      QS N+S + S    +  +D + +      A +P+T 
Sbjct: 1447 ------------KPSPQS----ANQSMNYSVAQSGQSQTSRID-IPVVVNSAGALQPQT- 1488

Query: 885  ESQRVLVSPHQLPASSSVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAA 944
                     + +P    +  SVN    +                                
Sbjct: 1489 ---------YPIPTPDPINVSVNHSATLH------------------------------- 1508

Query: 945  RPEMMAPSPKPVTGAQGWGSASSQKLEPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPV 1004
                   SP P  G Q WGS  +     N P S    S +Y  P         SP V P 
Sbjct: 1509 -------SPTPAGGKQSWGSMQTDHGGSNTPSS-QNNSTSYGTP---------SPSVLPS 1551

Query: 1005 SGQSGMPASDSWRAPVPSQSNVQSPAQPITPWGMG-VAGNQSAVPRQVPESQNTGWGQMP 1063
              Q G P SDSW+  VPSQ N Q+ AQ    WGM  V  NQ++   Q P +QN+ WGQ  
Sbjct: 1552 QSQPGFPPSDSWKVAVPSQPNAQAQAQ----WGMNMVNNNQNSAQPQAPANQNSSWGQGT 1607

Query: 1064 ANPSMGWGGQLPASTNMNWG---APAQGQAPGNAHSGWAGPAQGQAHKNAVPGWAPPGQG 1120
             NP+MGW G      N+NWG    P+  Q  G  HSGW  P QGQ      PGW P G  
Sbjct: 1608 VNPNMGWVGPAQTGVNVNWGGSSVPSTVQ--GITHSGWVAPVQGQTQAYPNPGWGPTGHP 1665

Query: 1121 PSPV---------NANTGWVAPGQGPPPGNGNPGWGA------PAG-----NPGMWGSDQ 1160
             S              +GW+ PGQG   GN N  WG       P+G       G WG+ Q
Sbjct: 1666 QSQSQSQVQAQAGTTGSGWMQPGQGIQSGNSNQNWGTQNQTAIPSGGSGGNQAGYWGNQQ 1725

Query: 1161 NNGGDRFSNQRDRGSHGGDSGYGGGRPWNRQPSFGSRGGDSSRPHFNKGQRVCK-FHESG 1219
                          S  GDSGYG    WNRQ      GG  +  +F KGQRVCK F E+G
Sbjct: 1726 Q-------------SQNGDSGYG----WNRQ-----SGGQQN--NF-KGQRVCKFFRENG 1760

Query: 1220 HCKKGSQCDYLH 1231
            HC+KG+ C+YLH
Sbjct: 1761 HCRKGASCNYLH 1772

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3 Back     alignment and function description
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2 Back     alignment and function description
>sp|A2AQ19|RTF1_MOUSE RNA polymerase-associated protein RTF1 homolog OS=Mus musculus GN=Rtf1 PE=2 SV=1 Back     alignment and function description
>sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens GN=RTF1 PE=1 SV=4 Back     alignment and function description
>sp|Q5RAD5|RTF1_PONAB RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii GN=RTF1 PE=2 SV=2 Back     alignment and function description
>sp|O94667|RTF1_SCHPO RNA polymerase-associated protein C651.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC651.09c PE=1 SV=1 Back     alignment and function description
>sp|Q0DVU4|C3H20_ORYSJ Zinc finger CCCH domain-containing protein 20 OS=Oryza sativa subsp. japonica GN=Os03g0112700 PE=2 SV=1 Back     alignment and function description
>sp|Q7KQM6|PERQ1_DROME PERQ amino acid-rich with GYF domain-containing protein CG11148 OS=Drosophila melanogaster GN=CG11148 PE=1 SV=2 Back     alignment and function description
>sp|Q6Y7W6|PERQ2_HUMAN PERQ amino acid-rich with GYF domain-containing protein 2 OS=Homo sapiens GN=GIGYF2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1232
449461655 1470 PREDICTED: zinc finger CCCH domain-conta 0.960 0.804 0.541 0.0
449515615 1475 PREDICTED: LOW QUALITY PROTEIN: zinc fin 0.960 0.802 0.537 0.0
356517883 1421 PREDICTED: uncharacterized protein LOC10 0.880 0.763 0.535 0.0
357467443 1942 Flavonol synthase/flavanone 3-hydroxylas 0.880 0.558 0.523 0.0
240254462 1773 DNA binding / nucleic acid binding / pro 0.871 0.605 0.483 0.0
297744733868 unnamed protein product [Vitis vinifera] 0.529 0.751 0.630 0.0
297735049 1362 unnamed protein product [Vitis vinifera] 0.564 0.511 0.546 0.0
255586318 1586 nuclear receptor binding set domain cont 0.602 0.467 0.494 0.0
357154373 1800 PREDICTED: uncharacterized protein LOC10 0.548 0.375 0.509 0.0
356495372 1953 PREDICTED: zinc finger CCCH domain-conta 0.531 0.335 0.525 0.0
>gi|449461655|ref|XP_004148557.1| PREDICTED: zinc finger CCCH domain-containing protein 19-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1194 bits (3090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1269 (54%), Positives = 848/1269 (66%), Gaps = 86/1269 (6%)

Query: 1    MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW 60
            MCYTCTFSLCKGC K+AVILCVRGNKGFCETCM+ V  IE+NEQGNKE  Q+DF+DKNSW
Sbjct: 249  MCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVTSIEKNEQGNKEKGQIDFNDKNSW 308

Query: 61   EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVDGGHGSDSSS 120
            EYLFK+YW DLK  LSL+ DEL  AKNPWKGS+T   +  SP EL D NVDGG   D S 
Sbjct: 309  EYLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSE 368

Query: 121  GNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRN 180
             N E+  SK+RKAKKRS+S+AK+  SP ++  +  +G STD +VEW SKELL+ VMHM+N
Sbjct: 369  -NEESGSSKKRKAKKRSRSQAKEMSSP-SMPATASQGLSTDDNVEWGSKELLEFVMHMKN 426

Query: 181  GDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESH 240
            GD++ LSQFDVQ LLLEYIK+ KLRDP+R++ +ICD+RL++LFGKPRVGHFEMLKLLESH
Sbjct: 427  GDRTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLESLFGKPRVGHFEMLKLLESH 486

Query: 241  FLTKEDSQVDELQGSVVDTEANLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDDY 300
            FL KED+Q+++L  SV +TE++ LEADG+  +     K +K++  +K D RGLQSN+DDY
Sbjct: 487  FLIKEDAQINDLHVSVAETESSQLEADGTDGS--GKIKKEKKRRTRKKDERGLQSNLDDY 544

Query: 301  AAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGT 360
            AAID+HNINLIYL+RN VE L+ED E+FHDKVVG+F RIRISGSA QKQDLYRLVQV GT
Sbjct: 545  AAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSA-QKQDLYRLVQVVGT 603

Query: 361  SKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLT 420
            SK +EPYKVGKR TDILLEILNLNKTEV+SIDIISNQEFTEDECKRLRQS+KCG+INRLT
Sbjct: 604  SKASEPYKVGKRMTDILLEILNLNKTEVVSIDIISNQEFTEDECKRLRQSMKCGIINRLT 663

Query: 421  VGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTP 480
            VGD+QE+AM+LQ+ RVKDWME EI+RLSHLRDRAS+ GRRKE      ECVEKLQLLKTP
Sbjct: 664  VGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKE----LRECVEKLQLLKTP 719

Query: 481  EERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMRPRGSGFSRRGREPISPGKG 540
            EERQRR+EEIPEIH+DPNMDPS+ESE++D   D +R+ Y   R + F RR REP+SPGKG
Sbjct: 720  EERQRRIEEIPEIHADPNMDPSHESEDEDEADDKRRETYTLSRSTSFGRRTREPVSPGKG 779

Query: 541  GSFSNDSLSGTRNYSGGIKDLTRNISNKGFSNKGDDLVGGGEIVNESLWNQARDRETEQF 600
            GS  NDS SGTRN+S   +D++RN+S KGF+N+GDD +G GEI+NE+ W   R+R+ ++ 
Sbjct: 780  GSHLNDSWSGTRNFSNTNRDMSRNLSGKGFANQGDDAIGSGEIINETSWGHGRERDVKKT 839

Query: 601  NSWDKPRTALNLETGARNNSVVLSESISRAVAEKSPASASTGVTQSAPKINESEKIWHYQ 660
            + WDK + + + E  ARN     +   S A +    AS+S G TQ+A  +NESEKIWHYQ
Sbjct: 840  SKWDK-QVSPSSEITARNALSGAASESSAAHSVNPAASSSVGTTQNAATVNESEKIWHYQ 898

Query: 661  DPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDI 720
            DPSGKVQGPFSMVQLRKW+NTGYFP +LRIWR +++Q+DS+LLTD LAGK  KD  L   
Sbjct: 899  DPSGKVQGPFSMVQLRKWSNTGYFPTDLRIWRISDQQEDSLLLTDVLAGKISKDTPLTSN 958

Query: 721  SLS---QTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHGTPGSSGQSGGTP--- 774
            SL     + P+ G+  G + Q G++     SSN   N T+++Q        Q+  +P   
Sbjct: 959  SLQVHPNSSPFVGRPQGGTLQSGVDGQNASSSNSHTNPTSYDQSSGGRWKSQNEVSPTGR 1018

Query: 775  ----SLELPKQYRDGWASE------TNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGS 824
                S+++P+   D W+S+      TNLPSPTP+   + E             P     S
Sbjct: 1019 PVSGSIKVPRYSGDRWSSDHGNKNFTNLPSPTPSSGGSKE------------QPFQVAAS 1066

Query: 825  LMVTNLFPGNVGKQSPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETV 884
             M      G  G       GL           SS  + S N D L    G  S+ K    
Sbjct: 1067 FMEAKSLSGTAGG------GLH---------GSSVMQGSEN-DSLRSHLGRNSSEKGLGS 1110

Query: 885  ESQRVLVSPHQLPASSSVV---ASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSG 941
                 L +    P   S +   AS+NP  DI+SI ANLQ+LVQS+++   P+E+HG GSG
Sbjct: 1111 GPINALQNHQSQPVRQSPIIDDASLNPAADIRSISANLQSLVQSINSRNPPIEAHGHGSG 1170

Query: 942  LAARPEMMAPSPKPVTGAQGWGSASSQKLEPNNPVSIP----------AQSPAYAQPYAS 991
               + E           ++ W +A S K+E N   S+P            SPA      +
Sbjct: 1171 SILKRE--------TDTSEAWQNAHSLKVESNVSSSMPPAQTLHSRWGEMSPA-QNAAVT 1221

Query: 992  TFNTGNSPGVFPVSGQSGMPASDSWRAPVPSQSN---VQSPAQPITPWGMGVAGNQSAVP 1048
            +F+ G+S   F  +G S  P+SD WR+  P  SN   +Q    P  PWGMG    QS VP
Sbjct: 1222 SFSAGSSTSSFSSAGMSSFPSSDPWRSTAPISSNPQHIQCSTPPNLPWGMGAPEGQSTVP 1281

Query: 1049 RQVPESQNTGWGQMPA-NPSMGWG--GQLPASTNMNWGAPAQGQAPGNAHSGWAGPAQGQ 1105
            RQ  ESQN  WG MP+ NP+MGWG  G  P +T M WGA AQ   P   + GW  P QG 
Sbjct: 1282 RQGSESQNQTWGPMPSGNPNMGWGPTGPPPNATAMMWGATAQSSGPAATNPGWIAPGQGP 1341

Query: 1106 AHKNAVPGWAPPGQGPSPVNANTGWVAPGQGP-PPGNGNPGWGAPAGNPGMWGSDQNNGG 1164
            A  N + GW      P PVNA  GWV P   P PP N NP W  P+ N  MWG++    G
Sbjct: 1342 AAGNNLQGWPAHSPMPPPVNATPGWVGPNVAPMPPMNMNPSWLVPSVNQNMWGNEHGKNG 1401

Query: 1165 DRFSNQRDRGSHGGDSGYGGGRPWNRQPSF--GSRGGDSSRPHFNKGQRVCKFHESGHCK 1222
            +RFSNQ+D GSHGGD G  G + W  QPSF  G  GG +SR  +N+ Q++CK+HESGHCK
Sbjct: 1402 NRFSNQKDGGSHGGDPG-NGDKSWGMQPSFGGGGGGGGNSRSPYNRVQKLCKYHESGHCK 1460

Query: 1223 KGSQCDYLH 1231
            KG  CDY H
Sbjct: 1461 KGGTCDYRH 1469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449515615|ref|XP_004164844.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517883|ref|XP_003527615.1| PREDICTED: uncharacterized protein LOC100815079 [Glycine max] Back     alignment and taxonomy information
>gi|357467443|ref|XP_003604006.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|355493054|gb|AES74257.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|240254462|ref|NP_179241.4| DNA binding / nucleic acid binding / protein binding / zinc ion binding protein [Arabidopsis thaliana] gi|391358194|sp|Q9SIV5.3|C3H19_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 19; Short=AtC3H19; AltName: Full=Protein Needed for RDR2-independent DNA methylation gi|330251407|gb|AEC06501.1| DNA binding / nucleic acid binding / protein binding / zinc ion binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297744733|emb|CBI37995.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735049|emb|CBI17411.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586318|ref|XP_002533810.1| nuclear receptor binding set domain containing protein 1, nsd, putative [Ricinus communis] gi|223526264|gb|EEF28579.1| nuclear receptor binding set domain containing protein 1, nsd, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357154373|ref|XP_003576761.1| PREDICTED: uncharacterized protein LOC100835763 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|356495372|ref|XP_003516552.1| PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1232
TAIR|locus:28272871773 NERD "Needed for RDR2-independ 0.827 0.574 0.426 3e-205
TAIR|locus:20808631292 AT3G51120 [Arabidopsis thalian 0.237 0.226 0.548 9.3e-148
TAIR|locus:2060949824 AT2G18090 "AT2G18090" [Arabido 0.213 0.319 0.409 9.3e-71
TAIR|locus:2150828553 AT5G08430 [Arabidopsis thalian 0.318 0.710 0.294 8.7e-53
TAIR|locus:2154473570 AT5G23480 [Arabidopsis thalian 0.413 0.892 0.212 4.5e-18
TAIR|locus:2116189144 AT4G34290 "AT4G34290" [Arabido 0.036 0.312 0.478 3.1e-06
UNIPROTKB|Q5RAD5665 RTF1 "RNA polymerase-associate 0.147 0.273 0.253 3.1e-06
UNIPROTKB|Q92541710 RTF1 "RNA polymerase-associate 0.147 0.256 0.253 3.4e-06
UNIPROTKB|E2RPD2714 RTF1 "Uncharacterized protein" 0.147 0.254 0.253 3.4e-06
MGI|MGI:1309480715 Rtf1 "Rtf1, Paf1/RNA polymeras 0.147 0.254 0.253 3.5e-06
TAIR|locus:2827287 NERD "Needed for RDR2-independent DNA methylation" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1966 (697.1 bits), Expect = 3.0e-205, Sum P(2) = 3.0e-205
 Identities = 480/1126 (42%), Positives = 617/1126 (54%)

Query:     3 YTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVML--IERNE----------------Q 44
             + C + LC  C K A  LC       C+ C K  +   I  N+                Q
Sbjct:   641 WNCGWHLCSKCEKTATYLCYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIERKQ 700

Query:    45 GNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDE 104
               KE AQ+DF+DK SWEYLFKDYW+DLK +LSLS +EL +AK P KG +T+A KQ +  E
Sbjct:   701 QEKEPAQLDFNDKTSWEYLFKDYWIDLKTQLSLSPEELDQAKRPLKGHETNASKQGTASE 760

Query:   105 LYDANVXXXXXXXXXXXNAEATVXXXXXXXXXXXXXXXDEVSPGTVKLSGGEGASTDGSV 164
               D  V               T                +++      LS G+   +D ++
Sbjct:   761 T-DY-VTDGGSDSDSSPKKRKT-------RSRSKSGSAEKI------LSSGDKNLSDETM 805

Query:   165 EWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFG 224
             EWASKELLDLV+HMR GD+S L   +VQTLLL YIK+Y LRDP+R++ VICD+RLQNLFG
Sbjct:   806 EWASKELLDLVVHMRRGDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFG 865

Query:   225 KPRVGHFEMLKLLESHFLTKEDSQVDELQGSVVDTEA-NLLEADGSSDALVXXXXXXXXX 283
             K  VGHFEML LL+SHFL KE +Q D++QG +VDTE  N ++ D + D  V         
Sbjct:   866 KSHVGHFEMLNLLDSHFLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRK 925

Query:   284 XXXXXXXXXLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISG 343
                       QSN+DD+AA+DMHNINLIYLRR+ VE+LLED+  F +KV   F R+RISG
Sbjct:   926 TRKKNVRKGRQSNLDDFAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRISG 985

Query:   344 SAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDE 403
             +  QKQDLYRLVQV GTSK  EPYKVGK+TTD +LEILNL+KTEVISIDIISNQ+FTEDE
Sbjct:   986 N--QKQDLYRLVQVVGTSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDE 1043

Query:   404 CKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEY 463
             CKRL+QSIKCGLINRLTVGDIQEKA+ALQEVRVK+ +EAEILR SHLRDRASD+GRRKEY
Sbjct:  1044 CKRLKQSIKCGLINRLTVGDIQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMGRRKEY 1103

Query:   464 PLLYE-----------ECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGET 512
             P L +           ECVEKLQLLK+PEERQRRLEEIPEIH+DP MDP  ESE++D + 
Sbjct:  1104 PYLLKLSNSLTMLTLRECVEKLQLLKSPEERQRRLEEIPEIHADPKMDPDCESEDEDEKE 1163

Query:   513 DDKRQDYMXXXXXXXXXXXXEPISPGKGGSFSNDSLSGTRNYSG--GIKDLTRNISNKGF 570
             + +++  +            +PISP KGG  SN+S +GT NYS     ++L+R+ S +G 
Sbjct:  1164 EKEKEKQLRPRSSSFNRRGRDPISPRKGGFSSNESWTGTSNYSNTSANRELSRSYSGRGS 1223

Query:   571 SNKGDDLVGGGEIVNESLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSESISRA 630
             + +GD L    + V++S+W  AR+RE +     +KPR+    ET AR++  +    +S  
Sbjct:  1224 TGRGDYLGSSDDKVSDSMWTSAREREVQPSLGSEKPRSVSIPETPARSSRAIAPPELSPR 1283

Query:   631 VAEKSPASASTGVTQSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRI 690
             +A +   +    V+Q  PK N+SEKIWHY+DPSGKVQGPFSM QLRKWNNTGYFPA L I
Sbjct:  1284 IASEISMAPPAVVSQPVPKSNDSEKIWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEI 1343

Query:   691 WRSNEKQDDSILLTDALAGKFHKDPRLVDISL--SQTIPYSGKSHGASSQPGMETPVGGS 748
             W++NE   DS+LLTDALAG F K  + VD S   +Q   +SG+S  + S+P +    G +
Sbjct:  1344 WKANESPLDSVLLTDALAGLFQKQTQAVDNSYMKAQVAAFSGQS--SQSEPNL----GFA 1397

Query:   749 SNFDQNRTAWNQHXXXXXXXXXXXXXXLELPKQYRDGWASETNLPSPTPTQSTAGEIKGK 808
             +     R A                  +E+P+  +D W+   +LPSPTP Q T    K +
Sbjct:  1398 A-----RIA---------------PTTIEIPRNSQDTWSQGGSLPSPTPNQITTPTAKRR 1437

Query:   809 TFEKEWSPT-PN----NQPGSLMVTNLFPGNVGKQSPPATGLETGQ-SPNFSTSSSASKL 862
              FE  WSPT P+    NQ  +  V         +   P      G   P      +   +
Sbjct:  1438 NFESRWSPTKPSPQSANQSMNYSVAQSGQSQTSRIDIPVVVNSAGALQPQTYPIPTPDPI 1497

Query:   863 SVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPXXXXXXXXXN-PGVDIKSIGANLQT 921
             +V+V+     H  T A   ++  S +        P           P   +     +   
Sbjct:  1498 NVSVNHSATLHSPTPAGGKQSWGSMQTDHGGSNTPSSQNNSTSYGTPSPSVLP-SQSQPG 1556

Query:   922 LVQSVSANVT-PVESHG-----WGSGLAARPEMMAPSPKPVTGAQGWGSASSQKLEPN-- 973
                S S  V  P + +      WG  +    +  A    P      WG  +   + PN  
Sbjct:  1557 FPPSDSWKVAVPSQPNAQAQAQWGMNMVNNNQNSAQPQAPANQNSSWGQGT---VNPNMG 1613

Query:   974 --NPVSIXXXXXXXXXXXXXTFNTGNSPG-VFPVSGQSGMPASDSWRAPVPSQSNVQSPA 1030
                P                T       G V PV GQ+    +  W      QS  QS  
Sbjct:  1614 WVGPAQTGVNVNWGGSSVPSTVQGITHSGWVAPVQGQTQAYPNPGWGPTGHPQSQSQSQV 1673

Query:  1031 QPITPWGMGVAGNQSAVPRQVPESQNTG--WG--QMPANPSMGWGG 1072
             Q       G  G+    P Q  +S N+   WG     A PS G GG
Sbjct:  1674 QAQA----GTTGSGWMQPGQGIQSGNSNQNWGTQNQTAIPSGGSGG 1715
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0005829 "cytosol" evidence=IDA
GO:0031048 "chromatin silencing by small RNA" evidence=IMP
GO:0042393 "histone binding" evidence=IDA
TAIR|locus:2080863 AT3G51120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060949 AT2G18090 "AT2G18090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150828 AT5G08430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154473 AT5G23480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116189 AT4G34290 "AT4G34290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RAD5 RTF1 "RNA polymerase-associated protein RTF1 homolog" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q92541 RTF1 "RNA polymerase-associated protein RTF1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPD2 RTF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1309480 Rtf1 "Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1232
smart00719109 smart00719, Plus3, Short conserved domain in trans 7e-43
pfam03126105 pfam03126, Plus-3, Plus-3 domain 8e-35
pfam0220176 pfam02201, SWIB, SWIB/MDM2 domain 6e-19
cd0007257 cd00072, GYF, GYF domain: contains conserved Gly-T 6e-18
smart0044456 smart00444, GYF, Contains conserved Gly-Tyr-Phe re 1e-17
pfam0221357 pfam02213, GYF, GYF domain 2e-15
smart0015177 smart00151, SWIB, SWI complex, BAF60b domains 3e-10
COG5531237 COG5531, COG5531, SWIB-domain-containing proteins 4e-07
COG5296521 COG5296, COG5296, Transcription factor involved in 8e-07
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-05
smart0035627 smart00356, ZnF_C3H1, zinc finger 5e-05
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 1e-04
PRK14724987 PRK14724, PRK14724, DNA topoisomerase III; Provisi 3e-04
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 4e-04
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 7e-04
PRK06319860 PRK06319, PRK06319, DNA topoisomerase I/SWI domain 8e-04
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 0.002
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 0.004
>gnl|CDD|197843 smart00719, Plus3, Short conserved domain in transcriptional regulators Back     alignment and domain information 
 Score =  151 bits (383), Expect = 7e-43
 Identities = 57/111 (51%), Positives = 80/111 (72%), Gaps = 2/111 (1%)

Query: 302 AIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTS 361
           AI   N+NL+ LRR+ VEELL    TF  KVVG F R++I  +  QKQ +YRLVQVTG  
Sbjct: 1   AIVFDNLNLLRLRRSLVEELL-KPPTFESKVVGCFVRVKIGPND-QKQPIYRLVQVTGVK 58

Query: 362 KGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIK 412
           +  +PY +G +TT++LLE+LN +  +V+ I+ ISNQ+FTE+E +R +Q+IK
Sbjct: 59  EADKPYSLGGKTTNVLLEVLNGDSEKVVQINFISNQDFTEEEFQRWKQAIK 109

Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein, which interacts with Spt6p, and in parsley CIP, which interacts with the bZIP protein CPRF1. Length = 109
>gnl|CDD|190531 pfam03126, Plus-3, Plus-3 domain Back     alignment and domain information
>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain Back     alignment and domain information
>gnl|CDD|238027 cd00072, GYF, GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins Back     alignment and domain information
>gnl|CDD|214666 smart00444, GYF, Contains conserved Gly-Tyr-Phe residues Back     alignment and domain information
>gnl|CDD|216932 pfam02213, GYF, GYF domain Back     alignment and domain information
>gnl|CDD|128456 smart00151, SWIB, SWI complex, BAF60b domains Back     alignment and domain information
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription] Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1232
KOG2402525 consensus Paf1/RNA polymerase II complex, RTF1 com 99.97
KOG1946240 consensus RNA polymerase I transcription factor UA 99.96
smart00719109 Plus3 Short conserved domain in transcriptional re 99.96
PF03126108 Plus-3: Plus-3 domain; InterPro: IPR004343 The yea 99.95
COG5296521 Transcription factor involved in TATA site selecti 99.92
KOG2570420 consensus SWI/SNF transcription activation complex 99.87
smart0015177 SWIB SWI complex, BAF60b domains. 99.77
PF0220176 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW 99.76
COG5531237 SWIB-domain-containing proteins implicated in chro 99.66
PRK14724987 DNA topoisomerase III; Provisional 99.57
KOG1862673 consensus GYF domain containing proteins [General 99.36
cd0007257 GYF GYF domain: contains conserved Gly-Tyr-Phe res 99.3
smart0044456 GYF Contains conserved Gly-Tyr-Phe residues. Proli 99.27
PF0221357 GYF: GYF domain; InterPro: IPR003169 The glycine-t 99.05
PRK06319860 DNA topoisomerase I/SWI domain fusion protein; Val 99.01
PF1423745 DUF4339: Domain of unknown function (DUF4339) 96.61
smart0035627 ZnF_C3H1 zinc finger. 95.77
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 95.3
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 91.31
KOG3032264 consensus Uncharacterized conserved protein [Funct 88.66
KOG1040 325 consensus Polyadenylation factor I complex, subuni 86.46
KOG1677 332 consensus CCCH-type Zn-finger protein [General fun 83.98
>KOG2402 consensus Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) [Transcription] Back     alignment and domain information 
Probab=99.97  E-value=2.9e-32  Score=313.96  Aligned_cols=170  Identities=24%  Similarity=0.313  Sum_probs=163.2

Q ss_pred             hhhhcHHHHhhhhhcHHHHHHHhcCcchHHHhhhcceEEEEecCCCCCCCCceEEEEEcCcCcCCcccccCCceecEEEE
Q 047631          300 YAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLE  379 (1232)
Q Consensus       300 ~AAidvedIn~IrLkRsfLe~l~~DPP~Fek~VvGcFVRI~IG~~~~qgq~vYRL~QIvGV~k~~K~YkLG~~~Tnk~L~  379 (1232)
                      ....++.+++.++|+|++|++||+ .|+|+++|+||||||+||...  ++++||||+|+||.++.|+|+++++.||+||.
T Consensus       213 ~~v~~~~dln~~rlsR~~vak~~~-~P~Fe~~V~gCfvRv~ig~~~--~~p~YRv~~I~gV~es~k~Y~l~~~~Tnk~l~  289 (525)
T KOG2402|consen  213 ARVPSISDLNALRLSRHKVAKWLF-SPFFESTVTGCFVRVGIGGEG--SKPVYRVAEIVGVLESDKPYKLEGVKTNKYLR  289 (525)
T ss_pred             cCCCCHHHHHHHHhhHHHHHHHHh-hhHHHHHhhhheEEeeecCcC--CCCceeEEEEeeecccCccccccceeecceee
Confidence            344568999999999999999999 999999999999999999884  88999999999999999999999999999999


Q ss_pred             EEeCCceeeEEeEeccCCcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhhhhhhhhhhcc
Q 047631          380 ILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGR  459 (1232)
Q Consensus       380 L~~G~keR~f~Id~VSNsdFTEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~ai~~~~teeEI~rL~~LidrA~EKgr  459 (1232)
                      |+||..+++|+|.+|||++|+++||++|+..|+...+.+||+..|.+|..+|.++++|.|++++|..|+      .||-+
T Consensus       290 ~~~G~s~r~f~m~~iSn~~f~e~Efq~w~~~~~~s~~~~PT~~~i~~K~~~i~~a~~~~~sd~~v~~~v------~~k~~  363 (525)
T KOG2402|consen  290 VRHGRSERVFRMNFISNGEFTEEEFQDWLRACKNSHGIMPTVDLISRKKLDIVKALNYRLSDKEVDQMV------AEKFE  363 (525)
T ss_pred             eecCcchhhcchhhhcCCcccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCccCcccHHHHH------Hhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999      88888


Q ss_pred             cccCCCcHHHHHHHHhhcCCH
Q 047631          460 RKEYPLLYEECVEKLQLLKTP  480 (1232)
Q Consensus       460 r~e~P~n~~ealeK~qLLksp  480 (1232)
                      ++..|.|+  ||+|+.|++..
T Consensus       364 ~~~~p~N~--ameK~~l~k~r  382 (525)
T KOG2402|consen  364 ASPRPRNV--AMEKTGLRKER  382 (525)
T ss_pred             cCcCcchH--HHHHHhHHHHH
Confidence            99999999  99999998876

>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription] Back     alignment and domain information
>smart00719 Plus3 Short conserved domain in transcriptional regulators Back     alignment and domain information
>PF03126 Plus-3: Plus-3 domain; InterPro: IPR004343 The yeast Paf1 complex consists of Pfa1, Rtf1, Cdc73, Ctr9, and Leo1 Back     alignment and domain information
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription] Back     alignment and domain information
>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00151 SWIB SWI complex, BAF60b domains Back     alignment and domain information
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation [] Back     alignment and domain information
>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics] Back     alignment and domain information
>PRK14724 DNA topoisomerase III; Provisional Back     alignment and domain information
>KOG1862 consensus GYF domain containing proteins [General function prediction only] Back     alignment and domain information
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins Back     alignment and domain information
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues Back     alignment and domain information
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif Back     alignment and domain information
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>PF14237 DUF4339: Domain of unknown function (DUF4339) Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG3032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1232
1wh2_A78 Solution Structure Of The Gyf Domain Of A Hypotheti 3e-10
1v32_A101 Solution Structure Of The SwibMDM2 DOMAIN OF THE Hy 5e-08
2db9_A149 Solution Structure Of The Plus-3 Domain Of Human Ki 5e-08
2bze_A153 Nmr Structure Of Human Rtf1 Plus3 Domain Length = 1 2e-07
3u1u_A137 Crystal Structure Of Rna Polymerase-Associated Prot 4e-07
>pdb|1WH2|A Chain A, Solution Structure Of The Gyf Domain Of A Hypothetical Protein From Arabidopsis Thaliana Length = 78 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 652 ESEKI-WHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDAL 707
           + EK+ W Y+DP G VQGPFS+ QL+ W++  YF    R+W + E  + ++LLTD L
Sbjct: 14  DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVLLTDVL 70
>pdb|1V32|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE Hypothetical Protein At5g08430 From Arabidopsis Thaliana Length = 101 Back     alignment and structure
>pdb|2DB9|A Chain A, Solution Structure Of The Plus-3 Domain Of Human Kiaa0252 Protein Length = 149 Back     alignment and structure
>pdb|2BZE|A Chain A, Nmr Structure Of Human Rtf1 Plus3 Domain Length = 153 Back     alignment and structure
>pdb|3U1U|A Chain A, Crystal Structure Of Rna Polymerase-Associated Protein Rtf1 Homolog Plus-3 Domain Length = 137 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1232
2bze_A153 KIAA0252 protein; human RTF1 PLUS3 domain, transcr 2e-37
3u1u_A137 RNA polymerase-associated protein RTF1 homolog; pl 4e-37
1v32_A101 AT5G08430, hypothetical protein RAFL09-47-K03; SWI 4e-29
1wh2_A78 Hypothetical protein AT5G08430; GYF domain, struct 1e-25
3k3v_A100 Protein SMY2; GYF domain, poly-proline binding, do 1e-16
1uhr_A93 SWI/SNF related, matrix associated, actin dependen 6e-16
1v31_A93 Hypothetical protein RAFL11-05-P19; SWI/SNF comple 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-06
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-05
1syx_B86 CD2BP2, CD2 antigen cytoplasmic tail-binding prote 3e-06
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-05
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 2e-05
2rhk_C72 Cleavage and polyadenylation specificity factor su 3e-05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 4e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 4e-04
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 5e-04
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1 Length = 153 Back     alignment and structure
 Score =  137 bits (346), Expect = 2e-37
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 9/158 (5%)

Query: 276 GGKDKKRKTRKKGDHRGLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGT 335
           G              R        +       +N + L R+ +E        F   V G 
Sbjct: 2   GSSHHHHHHSSGLVPR------GSHMVSLPEELNRVRLSRHKLERWC-HMPFFAKTVTGC 54

Query: 336 FARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIIS 395
           F RI I    H  + +YR+ ++TG  +  + Y++G   T+  L++ + N   V  ++ +S
Sbjct: 55  FVRIGIGN--HNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVS 112

Query: 396 NQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQE 433
           NQEFTE E  + ++++    +   T+ +I +K ++++E
Sbjct: 113 NQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 150
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A Length = 137 Back     alignment and structure
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 101 Back     alignment and structure
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1 Length = 78 Back     alignment and structure
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A Length = 100 Back     alignment and structure
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Length = 93 Back     alignment and structure
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 93 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A Length = 86 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1232
2bze_A153 KIAA0252 protein; human RTF1 PLUS3 domain, transcr 100.0
3u1u_A137 RNA polymerase-associated protein RTF1 homolog; pl 100.0
1v32_A101 AT5G08430, hypothetical protein RAFL09-47-K03; SWI 99.95
1v31_A93 Hypothetical protein RAFL11-05-P19; SWI/SNF comple 99.86
1uhr_A93 SWI/SNF related, matrix associated, actin dependen 99.86
1wh2_A78 Hypothetical protein AT5G08430; GYF domain, struct 99.72
3k3v_A100 Protein SMY2; GYF domain, poly-proline binding, do 99.36
1syx_B86 CD2BP2, CD2 antigen cytoplasmic tail-binding prote 98.44
3dac_M130 MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X 96.24
3fea_A100 MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, p 95.71
2z5s_M140 MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylat 95.27
1ycq_A107 MDM2, MDM2; anti-oncogene, DNA-binding, transcript 94.72
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 94.68
1z1m_A119 Ubiquitin-protein ligase E3 MDM2; peptide-binding 94.39
2rhk_C72 Cleavage and polyadenylation specificity factor su 93.89
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 93.43
2axi_A115 Ubiquitin-protein ligase E3 MDM2; drug design, pro 93.15
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 91.8
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 90.43
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 89.74
3u1l_A 240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 86.33
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 84.42
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 84.22
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 83.24
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-34  Score=291.78  Aligned_cols=135  Identities=24%  Similarity=0.393  Sum_probs=127.7

Q ss_pred             hhhhhcHHHHhhhhhcHHHHHHHhcCcchHHHhhhcceEEEEecCCCCCCCCceEEEEEcCcCcCCcccccCCceecEEE
Q 047631          299 DYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILL  378 (1232)
Q Consensus       299 d~AAidvedIn~IrLkRsfLe~l~~DPP~Fek~VvGcFVRI~IG~~~~qgq~vYRL~QIvGV~k~~K~YkLG~~~Tnk~L  378 (1232)
                      +....++++|++|||+|++|++||+ .|+|+++|+||||||+||++  +++++||||||+||.++.|+|+|+++.||++|
T Consensus        19 ~~~v~~l~di~~irL~Rs~l~~~~~-~P~Fe~~V~GcFVRV~ig~~--~~~~~YRl~qI~gv~~~~k~Y~l~~~~T~~~L   95 (153)
T 2bze_A           19 SHMVSLPEELNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGNH--NSKPVYRVAEITGVVETAKVYQLGGTRTNKGL   95 (153)
T ss_dssp             CSBCCCHHHHHHSEECHHHHHHHSS-SSSCHHHHTTCEEEEESSTT--SSSCCEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCcCCHHHhhheEEEHHHHHHHhc-CCchhHheEEEEEEEEeCCC--CCCccEEEEEEEeEEecCcccccCCcccceEE
Confidence            4445678899999999999999999 68999999999999999986  58899999999999888999999999999999


Q ss_pred             EEEeCCceeeEEeEeccCCcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Q 047631          379 EILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRV  436 (1232)
Q Consensus       379 ~L~~G~keR~f~Id~VSNsdFTEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~ai~  436 (1232)
                      +|++|+.+|.|+|++|||++|||+||++|++.|+++++++||+++|++|+++|++|++
T Consensus        96 ~l~~g~~~r~~~m~~vSN~~fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~a~n  153 (153)
T 2bze_A           96 QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN  153 (153)
T ss_dssp             EEESSSCEEEECGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHHC-
T ss_pred             EEEECCcceEEEeeEeeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999974
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A Back     alignment and structure
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Back     alignment and structure
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1 Back     alignment and structure
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A Back     alignment and structure
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A Back     alignment and structure
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} Back     alignment and structure
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A Back     alignment and structure
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M Back     alignment and structure
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A* Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1232
d2bzea1132 b.34.21.1 (A:345-476) RNA polymerase-associated pr 7e-39
d1v32a_101 a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl 1e-25
d1wh2a_78 d.76.1.1 (A:) Hypothetical rotein At5g08430 {Thale 2e-21
d1syxb162 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein 7e-15
d1uhra_93 a.42.1.1 (A:) SWI/SNF related regulator of chromat 1e-14
d1v31a_93 a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl 5e-13
d2cqea229 g.66.1.1 (A:429-457) Zinc finger CCCH domain-conta 4e-04
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 132 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Plus3-like
family: Plus3
domain: RNA polymerase-associated protein RTF1 homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (350), Expect = 7e-39
 Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 3/127 (2%)

Query: 307 NINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEP 366
            +N + L R+ +E        F   V G F RI I    H  + +YR+ ++TG  +  + 
Sbjct: 6   ELNRVRLSRHKLERWCHM-PFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKV 62

Query: 367 YKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQE 426
           Y++G   T+  L++ + N   V  ++ +SNQEFTE E  + ++++    +   T+ +I +
Sbjct: 63  YQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINK 122

Query: 427 KAMALQE 433
           K ++++E
Sbjct: 123 KELSIKE 129
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101 Back     information, alignment and structure
>d1wh2a_ d.76.1.1 (A:) Hypothetical rotein At5g08430 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1syxb1 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Length = 93 Back     information, alignment and structure
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Length = 29 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1232
d2bzea1132 RNA polymerase-associated protein RTF1 homolog {Hu 100.0
d1v32a_101 Hypothetical protein AT5G08430 (rafl09-47-k03) {Th 99.93
d1v31a_93 Hypothetical protein AT5G14170 (rafl11-05-p19) {Th 99.84
d1uhra_93 SWI/SNF related regulator of chromatin (BRG1-assoc 99.84
d1wh2a_78 Hypothetical rotein At5g08430 {Thale cress (Arabid 99.66
d1syxb162 GYF domain from cd2bp2 protein {Human (Homo sapien 98.98
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.18
d1ttva_107 MDM2 {African clawed frog (Xenopus laevis) [TaxId: 97.1
d2axia185 MDM2 {Human (Homo sapiens) [TaxId: 9606]} 97.04
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 89.42
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 85.77
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 80.34
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Plus3-like
family: Plus3
domain: RNA polymerase-associated protein RTF1 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=285.19  Aligned_cols=130  Identities=25%  Similarity=0.419  Sum_probs=124.7

Q ss_pred             cHHHHhhhhhcHHHHHHHhcCcchHHHhhhcceEEEEecCCCCCCCCceEEEEEcCcCcCCcccccCCceecEEEEEEeC
Q 047631          304 DMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNL  383 (1232)
Q Consensus       304 dvedIn~IrLkRsfLe~l~~DPP~Fek~VvGcFVRI~IG~~~~qgq~vYRL~QIvGV~k~~K~YkLG~~~Tnk~L~L~~G  383 (1232)
                      +.++|++|+|+|+.|++||+ .|+|+++|+||||||+||++  +++++||||||+||.++.++|++++++||++|.|+||
T Consensus         3 ~~e~l~~irL~R~~l~~~~~-~P~Fe~~v~GcFVRv~ig~~--~~~~~Yrl~~I~gv~~~~k~Y~~~~~~T~~~L~l~~g   79 (132)
T d2bzea1           3 LPEELNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGNH--NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHG   79 (132)
T ss_dssp             CHHHHHHSEECHHHHHHHSS-SSSCHHHHTTCEEEEESSTT--SSSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             ChHHhhheEEeHHHHHHHHc-CCchHHhheeeEEEEEeCCC--CCCCceEEEEEEeeeecCcccccCCCcccEEEEEEEC
Confidence            57899999999999999999 78999999999999999975  5899999999999988899999999999999999999


Q ss_pred             CceeeEEeEeccCCcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Q 047631          384 NKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRV  436 (1232)
Q Consensus       384 ~keR~f~Id~VSNsdFTEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~ai~  436 (1232)
                      +.+|.|+|++|||++|||+||++|++.|+++++++||+.+|++|+++|++|++
T Consensus        80 ~~~~~~~l~~vSn~~fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~a~n  132 (132)
T d2bzea1          80 NDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN  132 (132)
T ss_dssp             SCEEEECGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHHC-
T ss_pred             CceeEEEeEEEeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999975
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh2a_ d.76.1.1 (A:) Hypothetical rotein At5g08430 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1syxb1 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure