Citrus Sinensis ID: 047670

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRDRL
cEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEEcccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEccccccEEEEEEEccccccEEEEEEEEcccccccc
cEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccccc
dtlvmrrgptlpeldefpeiRRREALEWSQHVKQLGELLMGLLCEGLGLatgrmkemtfidgrmmignyypycpqpdltvgipfhtdpGALAILLQdhhgglqckcgddwvdvkpvpgalvVDIGDVFQIlsndeyksmDHRALANSFREARVSAVVffapsdrdrl
dtlvmrrgptlpeldefpeiRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVvffapsdrdrl
DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQlgellmgllceglglATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRDRL
***********************EALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFF********
DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSD****
DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRDRL
DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSD****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRDRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
Q9LTH8364 1-aminocyclopropane-1-car yes no 0.988 0.453 0.469 6e-38
Q43383398 1-aminocyclopropane-1-car no no 0.958 0.402 0.462 2e-35
Q94A78351 1-aminocyclopropane-1-car no no 0.958 0.455 0.45 2e-35
P93824360 1-aminocyclopropane-1-car no no 0.982 0.455 0.439 3e-35
Q84MB3365 1-aminocyclopropane-1-car no no 0.952 0.435 0.462 4e-35
Q9LTH7366 1-aminocyclopropane-1-car no no 0.976 0.445 0.457 1e-34
Q9LSW6362 1-aminocyclopropane-1-car no no 0.964 0.444 0.456 2e-34
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.952 0.396 0.425 2e-33
Q9LSW7365 1-aminocyclopropane-1-car no no 0.886 0.405 0.496 3e-33
Q8H1S4369 1-aminocyclopropane-1-car no no 0.982 0.444 0.414 9e-32
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function desciption
 Score =  156 bits (394), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)

Query: 1   DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFI 60
           D++     P  P  +E PE  R   +E+S+HV  LG+LL  LL E LGL +  +K M  +
Sbjct: 153 DSISCYMAPDPPTPEELPETCRDAMIEYSKHVLSLGDLLFELLSEALGLKSEILKSMDCL 212

Query: 61  DGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGAL 120
              +MI +YYP CPQPDLT+GI  H+D   L +LLQD+ GGLQ    D WVDV P+PGAL
Sbjct: 213 KSLLMICHYYPPCPQPDLTLGISKHSDNSFLTVLLQDNIGGLQILHQDSWVDVSPLPGAL 272

Query: 121 VVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRDR 166
           VV++GD  Q+++ND++ S++HR LAN+ R  R+S   FF+ S R+ 
Sbjct: 273 VVNVGDFLQLITNDKFISVEHRVLANT-RGPRISVASFFSSSIREN 317

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g03400 PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
224111448 371 predicted protein [Populus trichocarpa] 1.0 0.450 0.646 7e-59
118489548 408 unknown [Populus trichocarpa x Populus d 1.0 0.409 0.640 1e-58
255570053 361 Desacetoxyvindoline 4-hydroxylase, putat 0.988 0.457 0.642 2e-58
225424360 393 PREDICTED: 1-aminocyclopropane-1-carboxy 1.0 0.424 0.574 2e-53
449449240 396 PREDICTED: 1-aminocyclopropane-1-carboxy 1.0 0.421 0.580 1e-49
356502372 378 PREDICTED: 1-aminocyclopropane-1-carboxy 1.0 0.441 0.538 5e-49
225440833 364 PREDICTED: 1-aminocyclopropane-1-carboxy 0.952 0.436 0.553 3e-47
359481610 363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.952 0.438 0.553 3e-47
255578973 369 Desacetoxyvindoline 4-hydroxylase, putat 0.952 0.430 0.553 6e-47
225440829 363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.958 0.440 0.531 9e-46
>gi|224111448|ref|XP_002315859.1| predicted protein [Populus trichocarpa] gi|222864899|gb|EEF02030.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 128/167 (76%)

Query: 1   DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFI 60
           DTL M  GP LPEL+E PEI R E ++W+Q  KQLGELLM LLCEGLGL  G++K++TF+
Sbjct: 161 DTLQMTLGPNLPELEEIPEICRNELVDWNQCAKQLGELLMELLCEGLGLNAGKLKDLTFL 220

Query: 61  DGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGAL 120
           D R M  +YYPYCPQPDLTVGI  HTDPG L +LLQD  GGLQ K G+ WVDVKPVPGA+
Sbjct: 221 DARTMAAHYYPYCPQPDLTVGIMSHTDPGVLTVLLQDQIGGLQVKHGEGWVDVKPVPGAI 280

Query: 121 VVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRDRL 167
           V+++GD+ QILSNDEYKS +HR LAN   E R+S  +FF P  RD L
Sbjct: 281 VINVGDIMQILSNDEYKSNEHRVLANGCHEPRISIAIFFNPLKRDSL 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118489548|gb|ABK96576.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|255570053|ref|XP_002525989.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223534721|gb|EEF36413.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225424360|ref|XP_002284896.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449240|ref|XP_004142373.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 6-like [Cucumis sativus] gi|449492729|ref|XP_004159083.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502372|ref|XP_003519993.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Glycine max] Back     alignment and taxonomy information
>gi|225440833|ref|XP_002282155.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481610|ref|XP_003632647.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578973|ref|XP_002530339.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223530143|gb|EEF32055.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225440829|ref|XP_002282131.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 11 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.982 0.450 0.412 1.3e-29
TAIR|locus:2052796362 AT2G30840 [Arabidopsis thalian 0.952 0.439 0.402 3.4e-29
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.952 0.435 0.4 3.9e-28
TAIR|locus:2020818351 AT1G03400 [Arabidopsis thalian 0.958 0.455 0.387 6.4e-28
TAIR|locus:2020798398 2A6 [Arabidopsis thaliana (tax 0.946 0.396 0.405 6.4e-28
TAIR|locus:2052781358 AT2G30830 [Arabidopsis thalian 0.952 0.444 0.383 1.3e-27
TAIR|locus:2176466362 AT5G43450 [Arabidopsis thalian 0.964 0.444 0.401 1.7e-27
TAIR|locus:2018349360 AT1G04350 [Arabidopsis thalian 0.982 0.455 0.378 2.8e-27
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.928 0.423 0.416 2.8e-27
TAIR|locus:2176456365 AT5G43440 [Arabidopsis thalian 0.874 0.4 0.437 7.3e-27
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 68/165 (41%), Positives = 97/165 (58%)

Query:     1 DTLVMRRGPTLPELDEFPEIRRREALEWSQHVKQXXXXXXXXXXXXXXXATGRMKEMTFI 60
             D++     P  P  +E PE  R   +E+S+HV                  +  +K M  +
Sbjct:   153 DSISCYMAPDPPTPEELPETCRDAMIEYSKHVLSLGDLLFELLSEALGLKSEILKSMDCL 212

Query:    61 DGRMMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGAL 120
                +MI +YYP CPQPDLT+GI  H+D   L +LLQD+ GGLQ    D WVDV P+PGAL
Sbjct:   213 KSLLMICHYYPPCPQPDLTLGISKHSDNSFLTVLLQDNIGGLQILHQDSWVDVSPLPGAL 272

Query:   121 VVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRD 165
             VV++GD  Q+++ND++ S++HR LAN+ R  R+S   FF+ S R+
Sbjct:   273 VVNVGDFLQLITNDKFISVEHRVLANT-RGPRISVASFFSSSIRE 316
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000041 "transition metal ion transport" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010043 "response to zinc ion" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020818 AT1G03400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176466 AT5G43450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-42
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-41
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 7e-35
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-33
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-33
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 4e-33
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-32
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-31
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 8e-31
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-30
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-30
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-29
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-28
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-27
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-26
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-24
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-22
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-22
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-20
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-19
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-14
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-14
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-13
PLN02485329 PLN02485, PLN02485, oxidoreductase 8e-12
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 9e-11
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 2e-06
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information 
 Score =  143 bits (363), Expect = 4e-42
 Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 11/149 (7%)

Query: 23  REAL-EWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIG-----NYYPYCPQP 76
           RE + E+ + V +L   LM +L   LGL   R++   F  G   +G     NYYP CPQP
Sbjct: 169 RELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQN-AF-GGEDGVGACLRVNYYPKCPQP 226

Query: 77  DLTVGIPFHTDPGALAILLQDHH-GGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDE 135
           DLT+G+  H+DPG + ILL D +  GLQ +  D W+ VKPVP A +V+IGD  Q+LSN  
Sbjct: 227 DLTLGLSPHSDPGGMTILLPDDNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQVLSNAI 286

Query: 136 YKSMDHRALANSFREARVSAVVFFAP-SD 163
           YKS++HR + NS +E RVS   F+ P SD
Sbjct: 287 YKSVEHRVIVNSAKE-RVSLAFFYNPKSD 314

Length = 362
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 167
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02997325 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02704335 flavonol synthase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02485329 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.95
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 96.13
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 96.11
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.74
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 93.15
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.05
TIGR02466201 conserved hypothetical protein. This family consis 90.72
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 87.45
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 84.9
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=2.7e-51  Score=324.21  Aligned_cols=154  Identities=34%  Similarity=0.559  Sum_probs=144.5

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcccCCcceeEEeecCCCCCCCCcccccCcCCCCCe
Q 047670           12 PELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPFHTDPGAL   91 (167)
Q Consensus        12 ~~~~~~p~~fr~~~~~y~~~~~~l~~~ll~~l~~~lg~~~~~~~~~~~~~~~~~~~~~yp~~~~~~~~~~~~~HtD~~~l   91 (167)
                      .||+. |++||+++++|+++|.+++.+|+++++++||+++++|.+.+....+.+|++|||+|+.++..+|+++|||+|+|
T Consensus        66 ~wP~~-~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~l  144 (262)
T PLN03001         66 HWPDF-PPDYREVVGEYGDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAI  144 (262)
T ss_pred             hCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCee
Confidence            57754 46899999999999999999999999999999999999887776778999999999988889999999999999


Q ss_pred             eEEeeCCCCccEEeeCCeEEEeecCCCeEEEEcchhhHHhhCCeeecccceeecCCCCCCeEEEEeeecCCCCCCC
Q 047670           92 AILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPSDRDRL  167 (167)
Q Consensus        92 Tll~~~~~~GLqv~~~g~W~~v~~~~~~~vvn~Gd~le~~SnG~~~s~~HRV~~~~~~~~R~S~~~F~~p~~d~~l  167 (167)
                      |||+||+++||||+.+|+|++|+|.+|++||||||+||+||||+|+|++|||+.+.. ++|||++||+.|+.|+.+
T Consensus       145 TlL~qd~v~GLqV~~~g~Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~~~-~~R~Sia~F~~p~~d~~i  219 (262)
T PLN03001        145 TLLIQDDVEGLQLLKDAEWLMVPPISDAILIIIADQTEIITNGNYKSAQHRAIANAN-KARLSVATFHDPAKTAKI  219 (262)
T ss_pred             EEEEeCCCCceEEeeCCeEEECCCCCCcEEEEccHHHHHHhCCccccccceEEcCCC-CCEEEEEEEEcCCCCCEE
Confidence            999999999999998899999999999999999999999999999999999998876 889999999999998754

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-19
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-19
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-18
1w9y_A319 The Structure Of Acc Oxidase Length = 319 8e-15
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 7e-06
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 4e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 68  NYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDV 127
           NYYP CPQP+L +G+  HTD  AL  +L +   GLQ      WV  K VP ++V+ IGD 
Sbjct: 215 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDT 274
Query: 128 FQILSNDEYKSMDHRALANSFREARVSAVVFFAP 161
            +ILSN +YKS+ HR L N   + R+S  VF  P
Sbjct: 275 LEILSNGKYKSILHRGLVNK-EKVRISWAVFCEP 307
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-62
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-61
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 8e-40
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-37
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-34
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-32
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  193 bits (493), Expect = 2e-62
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 1   DTLVMRRGPT--LPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMT 58
            T  ++  P   + E+ +  E  R    ++++ +++L E L+ LLCE LGL  G +K   
Sbjct: 88  STFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNA- 146

Query: 59  FIDGR----MMIGNYYPYCPQPDLTVGIPFHTDPGALAILLQDHH-GGLQCKCGDDWVDV 113
           F   +        + YP CP+PDL  G+  HTD G + +L QD    GLQ      W+DV
Sbjct: 147 FYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDV 206

Query: 114 KPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVSAVVFFAPS 162
            P+  ++VV++GD  ++++N +YKS+ HR +A      R+S   F+ P 
Sbjct: 207 PPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGA-RMSLASFYNPG 254
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.9
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 95.36
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 94.66
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 91.26
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 91.12
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 90.55
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 90.48
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 88.3
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 87.93
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=5.6e-50  Score=323.93  Aligned_cols=164  Identities=34%  Similarity=0.595  Sum_probs=147.7

Q ss_pred             eeeEeccCCC---CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcccC---CcceeEEeecCCCCC
Q 047670            2 TLVMRRGPTL---PELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFI---DGRMMIGNYYPYCPQ   75 (167)
Q Consensus         2 ~l~~~~~P~~---~~~~~~p~~fr~~~~~y~~~~~~l~~~ll~~l~~~lg~~~~~~~~~~~~---~~~~~~~~~yp~~~~   75 (167)
                      +|++...|..   .||+. |++||+++++|+++|.+++.+|+++|+++||+++++|.+.+..   ..+.+|++|||||++
T Consensus        89 ~~~~~~~p~~~~~~wP~~-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~  167 (319)
T 1w9y_A           89 TFFLKHLPISNISEVPDL-DEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPK  167 (319)
T ss_dssp             EEEEEEESCCGGGGCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSC
T ss_pred             heeeecCCcccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcCCccceeEEEecCCCcc
Confidence            4555544431   57765 4579999999999999999999999999999999999987753   456899999999998


Q ss_pred             CCCcccccCcCCCCCeeEEeeC-CCCccEEeeCCeEEEeecCCCeEEEEcchhhHHhhCCeeecccceeecCCCCCCeEE
Q 047670           76 PDLTVGIPFHTDPGALAILLQD-HHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVS  154 (167)
Q Consensus        76 ~~~~~~~~~HtD~~~lTll~~~-~~~GLqv~~~g~W~~v~~~~~~~vvn~Gd~le~~SnG~~~s~~HRV~~~~~~~~R~S  154 (167)
                      ++...|+++|||+|+||+|+|| +++||||+.+|+|++|+|.+|++|||+||+||+||||+|||++|||+.++. ++|+|
T Consensus       168 ~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~-~~R~S  246 (319)
T 1w9y_A          168 PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKD-GARMS  246 (319)
T ss_dssp             GGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSS-SCCEE
T ss_pred             cccccccccccCCCceEEEEecCCCCeeeEeeCCeEEEcccCCCcEEEEhHHHHHHHhCCeeecccceecCCCC-CCceE
Confidence            8888999999999999999996 799999998999999999999999999999999999999999999999887 89999


Q ss_pred             EEeeecCCCCCCC
Q 047670          155 AVVFFAPSDRDRL  167 (167)
Q Consensus       155 ~~~F~~p~~d~~l  167 (167)
                      ++||++|+.|+.|
T Consensus       247 ia~F~~p~~d~~i  259 (319)
T 1w9y_A          247 LASFYNPGSDAVI  259 (319)
T ss_dssp             EEEEEECCTTCEE
T ss_pred             EEEEecCCCCCeE
Confidence            9999999998753
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 167
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-21
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-18
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-18
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-12
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.3 bits (215), Expect = 1e-21
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 4/156 (2%)

Query: 11  LPELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTFIDGRMMIG--- 67
           L    + P        E+++ ++ L   +   L  GLGL   R+++       +++    
Sbjct: 154 LSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKI 213

Query: 68  NYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDV 127
           NYYP CPQP+L +G+  HTD  AL  +L +   GLQ      WV  K VP ++V+ IGD 
Sbjct: 214 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDT 273

Query: 128 FQILSNDEYKSMDHRALANSFREARVSAVVFFAPSD 163
            +ILSN +YKS+ HR L N  +  R+S  VF  P  
Sbjct: 274 LEILSNGKYKSILHRGLVNKEKV-RISWAVFCEPPK 308
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.94
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 93.29
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=1.4e-47  Score=306.08  Aligned_cols=164  Identities=34%  Similarity=0.595  Sum_probs=145.0

Q ss_pred             eeeEeccCCC---CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccc---CCcceeEEeecCCCCC
Q 047670            2 TLVMRRGPTL---PELDEFPEIRRREALEWSQHVKQLGELLMGLLCEGLGLATGRMKEMTF---IDGRMMIGNYYPYCPQ   75 (167)
Q Consensus         2 ~l~~~~~P~~---~~~~~~p~~fr~~~~~y~~~~~~l~~~ll~~l~~~lg~~~~~~~~~~~---~~~~~~~~~~yp~~~~   75 (167)
                      .|++...|..   .|++. |++||+++++|++.|.+++.+|+++++++||+++++|.+.+.   ...+.+|++|||+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~-~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~  166 (307)
T d1w9ya1          88 TFFLKHLPISNISEVPDL-DEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPK  166 (307)
T ss_dssp             EEEEEEESCCGGGGCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSC
T ss_pred             hcccccccccCcccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCcc
Confidence            3444444432   34433 568999999999999999999999999999999999988652   3356889999999999


Q ss_pred             CCCcccccCcCCCCCeeEEeeC-CCCccEEeeCCeEEEeecCCCeEEEEcchhhHHhhCCeeecccceeecCCCCCCeEE
Q 047670           76 PDLTVGIPFHTDPGALAILLQD-HHGGLQCKCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARVS  154 (167)
Q Consensus        76 ~~~~~~~~~HtD~~~lTll~~~-~~~GLqv~~~g~W~~v~~~~~~~vvn~Gd~le~~SnG~~~s~~HRV~~~~~~~~R~S  154 (167)
                      ++...|+++|||+|+||+|+|+ .++||||..+|+|++|+|.+|++|||+||+||+||||+|+||.|||+.+++ .+|||
T Consensus       167 ~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~-~~R~S  245 (307)
T d1w9ya1         167 PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKD-GARMS  245 (307)
T ss_dssp             GGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSS-SCCEE
T ss_pred             cccccccccccccceeEEeeccCCCCeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCC-CCcEE
Confidence            8888999999999999999997 589999999999999999999999999999999999999999999999887 89999


Q ss_pred             EEeeecCCCCCCC
Q 047670          155 AVVFFAPSDRDRL  167 (167)
Q Consensus       155 ~~~F~~p~~d~~l  167 (167)
                      ++||++|+.|++|
T Consensus       246 i~~F~~p~~d~~i  258 (307)
T d1w9ya1         246 LASFYNPGSDAVI  258 (307)
T ss_dssp             EEEEEECCTTCEE
T ss_pred             EEEEeeCCCCCEE
Confidence            9999999999864
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure