Citrus Sinensis ID: 047682
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1425 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.977 | 0.971 | 0.726 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.974 | 0.976 | 0.713 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.976 | 0.968 | 0.718 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.985 | 0.972 | 0.703 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.990 | 0.968 | 0.698 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.990 | 0.968 | 0.698 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.988 | 0.971 | 0.680 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.973 | 0.696 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.985 | 0.959 | 0.690 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.985 | 0.956 | 0.676 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2188 bits (5670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1036/1426 (72%), Positives = 1213/1426 (85%), Gaps = 33/1426 (2%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SRDEDDEEAL WAALEKLPT++RL+KG+L S GAA EVD++ LG ER+ L+++LVKV
Sbjct: 41 SSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDLGFQERKNLLERLVKV 100
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
AD DNE+ LLKLKNR+DRVGI LP IEVR+EHLN++A+AYVG R+LPTF NF N +E
Sbjct: 101 ADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRSLPTFMNFMTNFVETL 160
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
LN LHIL SRK++ TILKD++GI+KP R+TLLLGPP+SGKTTLLLALAGKLDP+LK++G+
Sbjct: 161 LNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLLALAGKLDPALKVTGK 220
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
V+YNGH + EFVPQRTAAYISQHD+HIGEMTVRETL FSARCQGVGSR++ML ELSRREK
Sbjct: 221 VSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELSRREK 280
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
ANIKPD DID++MKA ATEGQEA+VVTDYV+K+LGLD+CADTMVGD+M+RGISGGQ+KR
Sbjct: 281 AANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKR 340
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGP+ ALFMDEISTGLDSSTT+ IV SLRQ + IL GTAVISLLQPAPETY+L
Sbjct: 341 VTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAPETYNL 400
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIIL+S+G IV+QGPR+ VLEFF+SMGF+CP+RKGVADFLQEVTSKKDQQQYW ++ E
Sbjct: 401 FDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNE 460
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PYRF+T KEF++A+Q+FHVG+KLGD L TPFDK+K HPAALT + YGI KKELLK C R
Sbjct: 461 PYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGIGKKELLKVCTER 520
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
ELLLMKRNSFVY+FK QLTI +I+MTLFFRT+M RD+ +GGIY GALFF +IMI FN
Sbjct: 521 ELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFN 580
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
GM+EL+M+I KLPVFYKQRDL F+P+WAY +P+WILK+P+ VEV +WVIL YYVIGFDP
Sbjct: 581 GMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDP 640
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
N+ R KQ+LLL++VNQM+SG+FR + A GR+M VA+TFGSFA+L+ FALGGFVLSR+D+
Sbjct: 641 NITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDV 700
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWL 720
K WW W YW SP+MY+ N + VNEF G W ++P E LG V+KSRGFF +AYWYW+
Sbjct: 701 KSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWI 760
Query: 721 GMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSSS 779
G+ L G ++FNF + LAL++LNPF QAV+ E+ ++ E G SS
Sbjct: 761 GVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAE-------------NGEVSS 807
Query: 780 HLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
+T +D + I+ +Q + GMVLPFEP S+TF+DVVYSVDMP
Sbjct: 808 QITSTDGG------------------DSISESQNNKKGMVLPFEPHSITFDDVVYSVDMP 849
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
QEMK QG +D+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G IK
Sbjct: 850 QEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIK 909
Query: 900 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
ISGYPKKQETFARISGYCEQNDIHSP VTVYESL+YSAWLRLP DVD +TR+MF++E+ME
Sbjct: 910 ISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVME 969
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
LVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 970 LVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1029
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGRHS HLI YFE+ P
Sbjct: 1030 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNP 1089
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRD 1139
GV KIK+GYNPATWMLEV++S+QE+ LG+DFT++YK S+LYRRNKALI EL P PGS+D
Sbjct: 1090 GVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKD 1149
Query: 1140 LYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSK 1199
L+F TQYSQSF+TQC+ACLWKQHWSYWRNP YTAVRF+FTT IAL+FG++FWDLGTK SK
Sbjct: 1150 LHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSK 1209
Query: 1200 RQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEI 1259
QDL NAMGSMY AV FLGVQN+SSVQPVVA+ER VFYRE+AAGMYS++ YAF QV IEI
Sbjct: 1210 SQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEI 1269
Query: 1260 PHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATV 1319
P++FVQ+V YG+IVYAMIGFEW KF WY+F MF++ L FTFYGMM VA+TPN ++A++
Sbjct: 1270 PYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASI 1329
Query: 1320 VSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGET 1379
V+ FYG+WN+FSGFIIPR R+P+WWRWYYWANP+AWTLYGLVASQFGDI T+L ET
Sbjct: 1330 VAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDI-QTKLSDNET 1388
Query: 1380 VKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
V+QFLR YFGFKHDFLGV+AAV A+ +F F FA IKAFNFQRR
Sbjct: 1389 VEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2172 bits (5627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1019/1428 (71%), Positives = 1203/1428 (84%), Gaps = 39/1428 (2%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTAST--GAANEVDVHKLGLLERQRLIDKLV 58
+SR+EDDEEAL WAALEKLPT++RL+KGILTAS G NE+D+ KLG + ++L+++L+
Sbjct: 32 SSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLGFQDTKKLLERLI 91
Query: 59 KVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIE 118
KV D ++E+LL KLK R+DRVGI LP IEVRF+HL VEAE +VGGRALPTF NF +N +
Sbjct: 92 KVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRALPTFVNFISNFAD 151
Query: 119 GFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLS 178
FLN LH++P+RKKKFTIL DV+GIVKP R+ LLLGPP+SGKTTLLLALAGKLD LK +
Sbjct: 152 KFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQELKQT 211
Query: 179 GRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 238
GRVTYNGH M+EFVPQRTAAYI Q+DVHIGEMTVRET A++AR QGVGSRYDML EL+RR
Sbjct: 212 GRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELARR 271
Query: 239 EKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298
EK+ANIKPDPDID+FMKA++T G++ +V+TDY++K+LGL+VCADTMVGD+MLRGISGGQ+
Sbjct: 272 EKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQK 331
Query: 299 KRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358
KRVTTGEMLVGP+ ALFMDEISTGLDSSTT+QIV SLR +HI NGTA+ISLLQPAPET+
Sbjct: 332 KRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETF 391
Query: 359 DLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRK 418
+LFDDIILI+EG+I+++GPR+HV+EFF++MGF+CP RKGVADFLQEVTSKKDQ QYW R+
Sbjct: 392 NLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWARR 451
Query: 419 EEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACI 478
+EPYRF+ V+EF++AFQ+FHVG+++GD L PFDK+KSHPAALTTK YG+ KEL+K
Sbjct: 452 DEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTSF 511
Query: 479 SRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMIT 538
SRE LLMKRNSFVY FK QL + ++MTLFFRT+M + + +G +Y GALFF ++M+
Sbjct: 512 SREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILMMLM 571
Query: 539 FNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGF 598
FNGM+ELSM+IAKLPVFYKQRDL FYPAW Y LP W+LK+PI+F+E A+ + YYVIGF
Sbjct: 572 FNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYVIGF 631
Query: 599 DPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSRE 658
DPNVGR FKQY+LLVL+NQM+S LF+++AA GR+M+VANTFG+FAMLV FALGG VLSR+
Sbjct: 632 DPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRD 691
Query: 659 DIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWY 718
DIKKWW W YW SP+MY QN + NEF G+SW + + NS+E LGV LKSRGF AYWY
Sbjct: 692 DIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWY 751
Query: 719 WLGMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSS 777
W+G L G ++LFNFGF LAL+FLN G QAVI+EE S+E +
Sbjct: 752 WIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETE--------------- 796
Query: 778 SSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVD 837
QS S E + A K+ GMVLPFEP S+TF++VVYSVD
Sbjct: 797 ----LQSARS-----------------EGVVEAGANKKRGMVLPFEPHSITFDNVVYSVD 835
Query: 838 MPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 897
MPQEM QG +D+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GN
Sbjct: 836 MPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGN 895
Query: 898 IKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI 957
I ISGYPK Q+TFARISGYCEQ DIHSP+VTVYESL+YSAWLRLP +VD R++F+EE+
Sbjct: 896 ITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEV 955
Query: 958 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
MELVEL PLRQ+LVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 956 MELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1015
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEA 1077
MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG EIYVGPLG S+HLI+YFE+
Sbjct: 1016 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFES 1075
Query: 1078 IPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGS 1137
I G+NKI +GYNPATWMLEVS++SQE ALGVDF +YK SELY+RNK LI+ELS+PAPGS
Sbjct: 1076 IQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGS 1135
Query: 1138 RDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKT 1197
+DLYFPTQYSQSF TQCMA LWKQHWSYWRNPPYTAVRFLFT IALMFG++FWDLG KT
Sbjct: 1136 KDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKT 1195
Query: 1198 SKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLI 1257
RQDL NAMGSMYTAV FLG+QN++SVQPVV VER VFYRE+AAGMYS+M YAFAQV I
Sbjct: 1196 KTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFI 1255
Query: 1258 EIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIA 1317
EIP+V VQA+VYG+IVYAMIGFEWTAVKF WY+FFM+ SFL FTFYGMM VAMTPN HIA
Sbjct: 1256 EIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIA 1315
Query: 1318 TVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESG 1377
+VVS AFYGIWN+FSGF+IPR +P+WW WYYW P+AWTLYGL+ASQFGDI + +S
Sbjct: 1316 SVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSN 1375
Query: 1378 ETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
+VKQF+R ++G++ FLGV+AA++V F +LF +FA+GIK+FNFQ+R
Sbjct: 1376 MSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2089 bits (5412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1426 (71%), Positives = 1215/1426 (85%), Gaps = 35/1426 (2%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
++RDEDDEEAL WAALEKLPTY+RL+KGIL S GAA EVDV G+LER+ L+++LVKV
Sbjct: 45 SARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDSGVLERKNLLERLVKV 104
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
AD DNE+ LLKLKNR+DRVGI P IEVRFEHLN++A+AYVG RALPTF NF +N +EG
Sbjct: 105 ADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGSRALPTFTNFISNFVEGL 164
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
L+ +HILPS+K++ TILKDV+GIVKP R+TLLLGPP SGKTTLLLALAGKLD +LK++G+
Sbjct: 165 LDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPGSGKTTLLLALAGKLDSALKVTGK 224
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH + EFVPQRTAAYISQHD+HIGEMTVRETL FSARCQGVGSRY+ML ELSRREK
Sbjct: 225 VTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSRYEMLAELSRREK 284
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
ANIKPD DID+FMKA +TEGQEA VVTDY++K+LGLD+CADTMVGD+M+RGISGGQ+KR
Sbjct: 285 AANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADTMVGDQMIRGISGGQKKR 344
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEM+VGP+ ALFMDEISTGLDSSTT+ IV SL+Q + I+ GTA+ISLLQPAPETY+L
Sbjct: 345 VTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMKGTALISLLQPAPETYNL 404
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIIL+S+G IV++GPRE VLEFF+SMGF+CP+RKG ADFLQEVTSKKDQQQYW+R++E
Sbjct: 405 FDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQEVTSKKDQQQYWIRRDE 464
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PYRF+T KEF++A+Q+FHVG+K+ D L+T FDKSKSHPAALTT+ YGI K++LLK C R
Sbjct: 465 PYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTTQKYGIGKRQLLKVCTER 524
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
ELLLM+RNSFVY+FK QL I +++MT+FFRTKM RDS +GGIY GALFF +IMI FN
Sbjct: 525 ELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDGGIYSGALFFVVIMIMFN 584
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
G++EL M++ KLPVFYKQRD FYP+WAY +P+WILK+P+ F EV +WV L YYV+GFDP
Sbjct: 585 GLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFAEVGMWVFLTYYVMGFDP 644
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
NVGR FKQ+LLL+LVNQM+S LFR +AA GR+M VA+TFG+FA+L+ FALGGF+L+R D+
Sbjct: 645 NVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALLLQFALGGFILARNDV 704
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWL 720
K WW W YW SPLMY+ N + VNEF G W+ ++ TEPLG V+++RGFF DAYWYW+
Sbjct: 705 KDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAVVRARGFFPDAYWYWI 764
Query: 721 GMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSSS 779
G+ LAG I++FN + +AL++LNPF QA IS+ES++NE
Sbjct: 765 GVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNE------------------- 805
Query: 780 HLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
+ +S ++ T+E +A++ K+ GMVLPF+P S+TF++VVYSVDMP
Sbjct: 806 ---------------SESSPQITSTQEGDSASENKKKGMVLPFDPHSITFDEVVYSVDMP 850
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
EM+ G D++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+IK
Sbjct: 851 PEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIK 910
Query: 900 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
ISGYPKKQ+TFARISGYCEQNDIHSP VTV+ESL+YSAWLRLP DV+ E R MF+EE+M+
Sbjct: 911 ISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEEVMD 970
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
LVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 971 LVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1030
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079
VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGR S HLI YFE+IP
Sbjct: 1031 AVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIP 1090
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRD 1139
GV+KI +GYNPATWMLEV++SSQE+ALGVDFTD+YK S+LYRRNKALI+ELS P PG+ D
Sbjct: 1091 GVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSD 1150
Query: 1140 LYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSK 1199
L+F +++SQ F+TQCMACLWKQHWSYWRNP YTAVR +FTT IAL+FG++FWD+GTK S+
Sbjct: 1151 LHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSR 1210
Query: 1200 RQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEI 1259
QDL NAMGSMY AV FLGVQNSSSVQPVV+VER VFYREKAAGMYS++ YAFAQVLIEI
Sbjct: 1211 NQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEI 1270
Query: 1260 PHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATV 1319
P++FVQA VYG+IVY+MIGFEWT KF W FFMF++FL FTF+GMM VA+TPN ++A++
Sbjct: 1271 PYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASI 1330
Query: 1320 VSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGET 1379
V+ FY +WN+FSGFI+PR RIPIWWRWYYW PIAWTLYGLVASQFGD+ D + +T
Sbjct: 1331 VAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQT 1390
Query: 1380 VKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
V+QFLRS FGFKHDFLGV+AAV VAF V+F F FALGIKAFNFQRR
Sbjct: 1391 VEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2074 bits (5374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1003/1426 (70%), Positives = 1201/1426 (84%), Gaps = 22/1426 (1%)
Query: 3 RDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKVAD 62
R+EDDEEAL WAA+EKLPTY+R++KGILTA G EVD+ LGL ER+ LI++LV+ A+
Sbjct: 38 REEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEEVDIGGLGLQERRNLIERLVRTAE 95
Query: 63 VDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLN 122
DNE+ LLKL++R++RVGI P IEVRFE+L+++AEAYVG R +PTF NF +N I L+
Sbjct: 96 EDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLS 155
Query: 123 CLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVT 182
+ I+ S K+ +IL D++GI++P R++LLLGPP SGKT+LLLALAGKLD +LK+SGRVT
Sbjct: 156 AMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVT 215
Query: 183 YNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242
YNGH+MDEFVPQRT+AYI QHD+HIGEMTVRETLAFSARCQGVG+RYDML ELSRREK+A
Sbjct: 216 YNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDMLTELSRREKEA 275
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
+IKPDPDIDV+MKA++ EGQE SVVTDY++K+LGL++CADTMVGD M+RGISGGQ+KRVT
Sbjct: 276 SIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRGISGGQKKRVT 334
Query: 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362
TGEMLVGPA ALFMDEISTGLDSSTT+QIV SLRQ +HIL GTA+I+LLQPAPETYDLFD
Sbjct: 335 TGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQPAPETYDLFD 394
Query: 363 DIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPY 422
DI+L+SEGQIV+QGPRE++LEFF++MGF+CP+RKGVADFLQEVTS+KDQ QYW R++EPY
Sbjct: 395 DIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPY 454
Query: 423 RFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISREL 482
R+++V +FS+AF+ FHVG+ LG LR PFD++++HPAALTT YGI+K EL KAC SRE
Sbjct: 455 RYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKMELTKACFSREW 514
Query: 483 LLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGM 542
LLMKRNSFVYIFK++QL I G I MT+F RTKMHR SV +G I++GA+F ++ FNG
Sbjct: 515 LLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGF 574
Query: 543 AELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNV 602
AEL+MSIAKLP+FYKQRDL FYP+WAY LPTW+LK+PI+F+E AVW+ + YYV+GFDPN+
Sbjct: 575 AELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGFDPNI 634
Query: 603 GRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKK 662
R F+ Y+LLVL++QM+SGLFRL+AA GR MVVA+TFGSFA L+L LGGF++SRE+IKK
Sbjct: 635 ERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKK 694
Query: 663 WWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVL--PNSTEPLGVEVLKSRGFFTDAYWYWL 720
WW W YW SPLMYAQN +AVNEFLG+SW KV+ S + LGV+VLK RG F DA WYW+
Sbjct: 695 WWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWI 754
Query: 721 GMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSSS 779
G+ L G I+LFN FIL L +L+P G QAV+SEE + NRTG ++L T G+ S
Sbjct: 755 GVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGTDS- 813
Query: 780 HLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
+NS S + + E A+ KR GMVLPF PLS+TF+++ YSVDMP
Sbjct: 814 --------------QNSPSDANAGRGEITGADTRKR-GMVLPFTPLSITFDNIRYSVDMP 858
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
QEMK +GV +D+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I
Sbjct: 859 QEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIS 918
Query: 900 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
ISGYPKKQETFARI+GYCEQNDIHSP+VTVYESLLYSAWLRLP +VDSE R+MF+EE+ME
Sbjct: 919 ISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVME 978
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
LVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 979 LVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1038
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLG +S HLI+YFE I
Sbjct: 1039 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQ 1098
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRD 1139
GV KIKDGYNPATWMLEV++ +QE LG++F ++Y+ S+LY+RNK LI ELS P PGS D
Sbjct: 1099 GVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTD 1158
Query: 1140 LYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSK 1199
L+FPTQ+SQ FFTQCMACLWKQH SYWRNP YTA R FTT IAL+FG++F +LG K +K
Sbjct: 1159 LHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINK 1218
Query: 1200 RQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEI 1259
R DLFN++GSMY AV F+G+QN +VQP+V VER VFYREKAAGMYS++ YAFAQVLIEI
Sbjct: 1219 RLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFAQVLIEI 1278
Query: 1260 PHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATV 1319
PH+F+Q VVYG+IVY++IGF+WT KF WY+FFMF++F+ FTFYGMM VAMTPN IA +
Sbjct: 1279 PHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAI 1338
Query: 1320 VSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGET 1379
VS AFY IWN+F+GF+IPR RIPIWWRWY WA P+AWTLYGLVASQ+GDI ++ LE GE
Sbjct: 1339 VSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGEV 1398
Query: 1380 VKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
V+ ++R YFGF+HD+LG +A V F LF FVFA IK FNFQRR
Sbjct: 1399 VQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2061 bits (5340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1003/1435 (69%), Positives = 1162/1435 (80%), Gaps = 24/1435 (1%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGIL-------TASTGAANEVDVHKLGLLERQRL 53
+SR+EDDEEAL WAALEKLPTY+R+++ IL G VDVH LG ER+ L
Sbjct: 37 SSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRAL 96
Query: 54 IDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFC 113
+++LV+VAD DNE+ LLKLK+RVDRVGI +P IEVRFEHL EAE VG LPT N
Sbjct: 97 LERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVGNSGLPTVLNSI 156
Query: 114 ANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP 173
N +E N L ILP+RK+ +L DV+GI+KP R+TLLLGPP SGKTTLLLALAG+L
Sbjct: 157 TNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGK 216
Query: 174 SLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLV 233
LK SG+VTYNGH M+EFVP+RTAAYISQHD+HIGEMTVRETLAFSARCQGVGSR+DML
Sbjct: 217 DLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLT 276
Query: 234 ELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293
ELSRREK ANIKPD DID FMKA A GQEA+V TDY++K+LGL++CADTMVGDEMLRGI
Sbjct: 277 ELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGI 336
Query: 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353
SGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTTFQIV SLRQ +HIL GTAVISLLQP
Sbjct: 337 SGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQP 396
Query: 354 APETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQ 413
APETY+LFDDIIL+S+GQIV+QGPRE VLEFF+SMGF+CP RKGVADFLQEVTSKKDQ+Q
Sbjct: 397 APETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQEVTSKKDQRQ 456
Query: 414 YWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKEL 473
YW R ++PYRFVTVKEF AFQ+FH G+ + + L PFDKSKSHPAAL T YG KEL
Sbjct: 457 YWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKEL 516
Query: 474 LKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFT 533
LKA I RE+LLMKRNSFVY+F+ QL + +I+MTLFFRTKM RDSVT+GGIY+GALFF
Sbjct: 517 LKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFG 576
Query: 534 IIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNY 593
++MI FNG +EL++++ KLPVF+KQRDL FYPAW+Y +P+WILK+PI F+EV +V L Y
Sbjct: 577 VLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTY 636
Query: 594 YVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGF 653
YVIGFD NVG FKQYLL++ +NQM+ LFR + R+M+VAN F SF +L+ LGGF
Sbjct: 637 YVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGF 696
Query: 654 VLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPN--STEPLGVEVLKSRGF 711
+L+RE +KKWW W YW SP+MYAQN ++VNE +G+SW K++ + S E LGV+VLKSRG
Sbjct: 697 ILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGV 756
Query: 712 FTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTGGTLQ 770
F +A WYW+G + G +LFN F LAL++L P+G S+ +SEE + N G +
Sbjct: 757 FPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIV- 815
Query: 771 LSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFE 830
HL+ R N T ++ ++D Q GMVLPF PLSL+F+
Sbjct: 816 ------GDVHLSSGSTRRP---MGNGTENDSTIVDDDTEVTQ---RGMVLPFTPLSLSFD 863
Query: 831 DVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 890
+V YSVDMPQEMK QGV DD+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKT
Sbjct: 864 NVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKT 923
Query: 891 GGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETR 950
GGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWLRLP DVDS TR
Sbjct: 924 GGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTR 983
Query: 951 RMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+MF+EE+MELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 984 KMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1043
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSH 1070
ARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIY GPLG HSS
Sbjct: 1044 ARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSE 1103
Query: 1071 LISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEEL 1130
LI YFE+IPGV+KIKDGYNPATWMLEV++ QE ALGVDF+DIYK SELY+RNKALI++L
Sbjct: 1104 LIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDL 1163
Query: 1131 SKPAPGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLF 1190
S+PAP S DLYFPTQYSQS TQCMACLWKQ+ SYWRNPPY AVRF FTT IAL+FG++F
Sbjct: 1164 SQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIF 1223
Query: 1191 WDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAY 1250
WDLG K +K QDLFNAMGSMY AV F+GV N +SVQPVVAVER VFYRE+AAGMYS+ Y
Sbjct: 1224 WDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPY 1283
Query: 1251 AFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAM 1310
AF QV+IEIP+ VQA VYG+IVYAMIGFEWTA KF WY+FFM ++ L FTFYGMM V +
Sbjct: 1284 AFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGL 1343
Query: 1311 TPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDID 1370
TPN HIA++VS AFY IWN+FSGF+IPR R+PIWWRWY WA P+AWTLYGLV SQFGDI
Sbjct: 1344 TPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI- 1402
Query: 1371 DTRLESGETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
+T +E G VK F+ +YFGFKH +LG +A V AF LF +F I FNFQ+R
Sbjct: 1403 ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2059 bits (5334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1002/1435 (69%), Positives = 1161/1435 (80%), Gaps = 24/1435 (1%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGIL-------TASTGAANEVDVHKLGLLERQRL 53
+SR+EDDEEAL WAALEKLPTY+R+++ IL G VDVH LG ER+ L
Sbjct: 37 SSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRAL 96
Query: 54 IDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFC 113
+++LV+VAD DNE+ LLKLK+RVDRVGI +P IEVRFEHL EAE VG LPT N
Sbjct: 97 LERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVGNSGLPTVLNSI 156
Query: 114 ANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP 173
N +E N L ILP+RK+ +L DV+GI+KP R+TLLLGPP SGKTTLLLALAG+L
Sbjct: 157 TNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGK 216
Query: 174 SLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLV 233
LK SG+VTYNGH M+EFVP+RTAAYISQHD+HIGEMTVRETLAFSARCQGVGSR+DML
Sbjct: 217 DLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLT 276
Query: 234 ELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293
ELSRREK ANIKPD DID FMKA A GQEA+V TDY++K+LGL++CADTMVGDEMLRGI
Sbjct: 277 ELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGI 336
Query: 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353
SGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTTFQIV SLRQ +HIL GTAVISLLQP
Sbjct: 337 SGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQP 396
Query: 354 APETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQ 413
APETY+LFDDIIL+S+GQIV+QGPRE VLEFF+S GF+CP RKGVADFLQEVTSKKDQ+Q
Sbjct: 397 APETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFLQEVTSKKDQRQ 456
Query: 414 YWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKEL 473
YW R ++PYRFVTVKEF AFQ+FH G+ + + L PFDKSKSHPAAL T YG KEL
Sbjct: 457 YWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKEL 516
Query: 474 LKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFT 533
LKA I RE+LLMKRNSFVY+F+ QL + +I+MTLFFRTKM RDSVT+GGIY+GALFF
Sbjct: 517 LKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFG 576
Query: 534 IIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNY 593
++MI FNG +EL++++ KLPVF+KQRDL FYPAW+Y +P+WILK+PI F+EV +V L Y
Sbjct: 577 VLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTY 636
Query: 594 YVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGF 653
YVIGFD NVG FKQYLL++ +NQM+ LFR + R+M+VAN F SF +L+ LGGF
Sbjct: 637 YVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGF 696
Query: 654 VLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPN--STEPLGVEVLKSRGF 711
+L+RE +KKWW W YW SP+MYAQN ++VNE +G+SW K++ + S E LGV+VLKSRG
Sbjct: 697 ILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGV 756
Query: 712 FTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTGGTLQ 770
F +A WYW+G + G +LFN F LAL++L P+G S+ +SEE + N G +
Sbjct: 757 FPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIV- 815
Query: 771 LSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFE 830
HL+ R N T ++ ++D Q GMVLPF PLSL+F+
Sbjct: 816 ------GDVHLSSGSTRRP---MGNGTENDSTIVDDDTEVTQ---RGMVLPFTPLSLSFD 863
Query: 831 DVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 890
+V YSVDMPQEMK QGV DD+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKT
Sbjct: 864 NVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKT 923
Query: 891 GGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETR 950
GGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWLRLP DVDS TR
Sbjct: 924 GGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTR 983
Query: 951 RMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+MF+EE+MELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 984 KMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1043
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSH 1070
ARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIY GPLG HSS
Sbjct: 1044 ARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSE 1103
Query: 1071 LISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEEL 1130
LI YFE+IPGV+KIKDGYNPATWMLEV++ QE ALGVDF+DIYK SELY+RNKALI++L
Sbjct: 1104 LIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDL 1163
Query: 1131 SKPAPGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLF 1190
S+PAP S DLYFPTQYSQS TQCMACLWKQ+ SYWRNPPY AVRF FTT IAL+FG++F
Sbjct: 1164 SQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIF 1223
Query: 1191 WDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAY 1250
WDLG K +K QDLFNAMGSMY AV F+GV N +SVQPVVAVER VFYRE+AAGMYS+ Y
Sbjct: 1224 WDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPY 1283
Query: 1251 AFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAM 1310
AF QV+IEIP+ VQA VYG+IVYAMIGFEWTA KF WY+FFM ++ L FTFYGMM V +
Sbjct: 1284 AFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGL 1343
Query: 1311 TPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDID 1370
TPN HIA++VS AFY IWN+FSGF+IPR R+PIWWRWY WA P+AWTLYGLV SQFGDI
Sbjct: 1344 TPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI- 1402
Query: 1371 DTRLESGETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
+T +E G VK F+ +YFGFKH +LG +A V AF LF +F I FNFQ+R
Sbjct: 1403 ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2041 bits (5289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 973/1429 (68%), Positives = 1165/1429 (81%), Gaps = 20/1429 (1%)
Query: 4 DEDDEEALIWAALEKLPTYNRLKKGILTAST------GAANEVDVHKLGLLERQRLIDKL 57
++DDEEAL WAALE+LPTY+R+++GIL S+ G EVDV +LG E + LI++L
Sbjct: 35 EDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGAGGEKVEVDVGRLGARESRALIERL 94
Query: 58 VKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLI 117
V+ AD D+E+ LLKL+ R+DRVGI P IEVRFE+L VEA+ +VG R LPT N N +
Sbjct: 95 VRAADDDHERFLLKLRERMDRVGIDYPTIEVRFENLEVEADVHVGNRGLPTLLNSVTNTV 154
Query: 118 EGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL 177
E N LHILP++K+ T+L DV+GI+KP R+TLLLGPP SGKTTLLLALAGKLD LK+
Sbjct: 155 EAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGKLDKDLKV 214
Query: 178 SGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 237
SG+VTYNGH M EFVP+RTAAYISQHD+HIGEMTVRETLAFSARCQGVG+RY+ML EL+R
Sbjct: 215 SGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 274
Query: 238 REKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297
REK ANIKPD DID++MKA A GQE+SVVTDY++K+LGLD+CADT+VG+EMLRGISGGQ
Sbjct: 275 REKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDICADTVVGNEMLRGISGGQ 334
Query: 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPET 357
RKRVTTGEMLVGPA ALFMDEISTGLDSSTT+QIV SLRQ IHIL GTAVISLLQPAPET
Sbjct: 335 RKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTIHILGGTAVISLLQPAPET 394
Query: 358 YDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVR 417
Y+LFDDIIL+S+GQ+V+QGPREHVLEFF+ MGF CP RKGVADFLQEVTS+KDQ QYW R
Sbjct: 395 YNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVADFLQEVTSRKDQGQYWCR 454
Query: 418 KEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKAC 477
++ PYRFV VK+F+DAF++FHVG+ + + L PFD+++SHPAAL T YG+++KELLKA
Sbjct: 455 RDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPAALATSKYGVSRKELLKAT 514
Query: 478 ISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMI 537
I RELLLMKRN+F+YIFK + LT+ +I MT FFRT M D G IY+GAL+F + +
Sbjct: 515 IDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR-DYGMIYLGALYFALDTV 573
Query: 538 TFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIG 597
FNG AEL+M++ KLPVF+KQRDL F+PAWAY +P+WIL++PI F+EV V+V + YYVIG
Sbjct: 574 MFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYVFITYYVIG 633
Query: 598 FDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSR 657
FDP+V R FKQYLLL+ +NQMSS LFR +A GR MVV++TFG ++L ALGGF+L+R
Sbjct: 634 FDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLSLLAFAALGGFILAR 693
Query: 658 EDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYW 717
D+KKWW W YW SPL YAQN ++ NEFLG+SW ++LP LGV VLKSRG FT+A W
Sbjct: 694 PDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGVSVLKSRGIFTEAKW 753
Query: 718 YWLGMAGLAGSILLFNFGFILALSFLNPF-GSQAVISEESQSNECDNRTGGTLQLSTCGS 776
YW+G+ L G LLFN + +ALS L+PF S A +SE++ + N TG ++ G
Sbjct: 754 YWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALKEKHANLTGEVVE----GQ 809
Query: 777 SSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSV 836
+ + + +I +NS S A + R GMVLPF PLS++F DV YSV
Sbjct: 810 KDTKSRKQELELSHIADQNSGINS--------ADSSASRKGMVLPFAPLSISFNDVRYSV 861
Query: 837 DMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 896
DMP+ MK QG+ +D+L+LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G
Sbjct: 862 DMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 921
Query: 897 NIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE 956
+I+ISGYPKKQETFARISGYCEQNDIHSP+VTVYESL++SAWLRLP +VDSE R+MF+EE
Sbjct: 922 DIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFIEE 981
Query: 957 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
+M+LVEL LR +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 982 VMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1041
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFE 1076
VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGP+G++SS LI YFE
Sbjct: 1042 VMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFE 1101
Query: 1077 AIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPG 1136
I GV++IKDGYNPATWMLEV+SS+QE LGVDF++IY+ SELY+RNK LIEELS P PG
Sbjct: 1102 GIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPG 1161
Query: 1137 SRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTK 1196
S DL FPTQYS+SF TQC+ACLWKQ+WSYWRNP YTAVR LFT IALMFG++FW+LGT+
Sbjct: 1162 STDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTR 1221
Query: 1197 TSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVL 1256
T K+QDLFNAMGSMY AV ++GVQNS SVQPVV VER VFYRE+AAGMYS+ YAF QV
Sbjct: 1222 TKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVA 1281
Query: 1257 IEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHI 1316
IE+P++ VQ ++YGV+VY+MIGFEWT KF+WY+FFM+++ L FTFYGMM V +TPN I
Sbjct: 1282 IELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESI 1341
Query: 1317 ATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLES 1376
A ++S AFY +WN+FSG++IPR +IP+WWRWY W P+AWTLYGLVASQFGDI
Sbjct: 1342 AAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGD 1401
Query: 1377 GETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
TV QF+ YFGF H+FL V+A VHV F V F F+F+ I FNFQRR
Sbjct: 1402 TRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2033 bits (5267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 993/1426 (69%), Positives = 1186/1426 (83%), Gaps = 23/1426 (1%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SR+EDDEEAL WAALEKLPTY+RL+KGI+T G EVD+ LG ER+ L++KLV+
Sbjct: 38 SSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDIQGLGFQERKNLLEKLVRN 97
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKL+NR++RVGI P IEVRFEHLN+ AEA+VG R +PT NF N
Sbjct: 98 AEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAFVGNRGVPTLVNFFVNKAIWI 157
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
L+ LH++PS K+ +IL DV+GI+KP R+TLLLGPP +GKTTLLLALAGKLD +LK++G
Sbjct: 158 LSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTTLLLALAGKLDNTLKVTGN 217
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH M EFVPQRT+AYISQHDVHIGEMTVRETLAFS+RCQGVG+RY+ML ELSRREK
Sbjct: 218 VTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRCQGVGTRYEMLTELSRREK 277
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
+ANIKPDPD+DV+MKA+A EGQE SVVTDY++K+LGLD+CADTMVGD M+RGISGGQ+KR
Sbjct: 278 EANIKPDPDVDVYMKAVAVEGQE-SVVTDYILKILGLDICADTMVGDGMIRGISGGQKKR 336
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGP+ ALFMDEISTGLDSSTTFQIV SLRQ +HIL GTA+I+LLQPAPETYDL
Sbjct: 337 VTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHILGGTALIALLQPAPETYDL 396
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDI+L+S+GQIV+QGPRE+VLEFF+SMGF+CP+RKGVADFLQEVTS+KDQQQYWVR+ E
Sbjct: 397 FDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVRENE 456
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PYRFV V EFS+AF++FHVG KL + L TPFD+S++HPAALTT YGI+K ELLKACI R
Sbjct: 457 PYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALTTSKYGISKMELLKACIDR 516
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
E LLMKRNSFVYIFK++QL + +I+MT+FFRTK+ R+ + + I+ GA+F ++ FN
Sbjct: 517 EWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLEDATIFFGAMFLGLVTHLFN 576
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
G AEL+MSIAKLPVFYKQRDL FYP WAY LPTWILK+PI+FVE VW+ + YYVIGFDP
Sbjct: 577 GFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISFVECGVWIAMTYYVIGFDP 636
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
NV R F+ YLLLVL++Q++SGLFRL+AA GR MVVA+TFG+FA LVL LGGF+++RE I
Sbjct: 637 NVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFAQLVLLVLGGFIIAREKI 696
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWL 720
KK+W W YW SPLMYAQN +AVNEFLG+SW K++ + + LG L++RG F D WYW+
Sbjct: 697 KKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNRGIFVDKNWYWI 756
Query: 721 GMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSSS 779
G+ L G ++LFNF FIL L +L+P G Q +SEE+ + NRTG ++L+T GS+++
Sbjct: 757 GVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEANRTGANVELATRGSAAT 816
Query: 780 HLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
SD IR+ + ++ GMVLPF PLS+TF++V YSVDMP
Sbjct: 817 ----SDGGSVEIRKDGN-----------------RKKGMVLPFTPLSITFDNVKYSVDMP 855
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
QEMK +GV +DKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGYI G+I+
Sbjct: 856 QEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIR 915
Query: 900 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
ISGYPK QETFARISGYCEQNDIHSP+VTVYESLLYSAWLRLP +VD + R+MF++E+M+
Sbjct: 916 ISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMD 975
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
LVELN LR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 976 LVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1035
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079
VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGR SSHLI YFE+I
Sbjct: 1036 AVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESID 1095
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRD 1139
GV KIK+ YNPATWMLEV++ SQE LG++F ++Y+ S+LY+RNK LI+ELS P PGS+D
Sbjct: 1096 GVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKD 1155
Query: 1140 LYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSK 1199
L+F TQ+SQSF QC+ACLWKQH SYWRNP YTA R FT IAL+FG++FWDLG K S
Sbjct: 1156 LFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKRST 1215
Query: 1200 RQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEI 1259
DL NAMGSMY AV F+G+QN+ +VQP+V VER VFYREKAAGMYS++ YA+AQVLIE+
Sbjct: 1216 SLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVLIEV 1275
Query: 1260 PHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATV 1319
PH+ VQ ++YG++VY+MIGF+WTA KF+WY+FFMF++FL FT+YGMM VAMTPN IA +
Sbjct: 1276 PHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAI 1335
Query: 1320 VSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGET 1379
V+ AFY IWN+F+GFIIPR RIPIWWRWYYWA P+AWTLYGLV SQFG+ DT + ET
Sbjct: 1336 VAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDET 1395
Query: 1380 VKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
VK FLR + GF+HDFL V+ + V FTVLF +FA IK NFQRR
Sbjct: 1396 VKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2023 bits (5240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 989/1432 (69%), Positives = 1169/1432 (81%), Gaps = 28/1432 (1%)
Query: 5 EDDEEALIWAALEKLPTYNRLKKGIL-------TASTGAANEVDVHKLGLLERQRLIDKL 57
EDDEEAL WAALEKLPTY+R+++ +L VDV LG ER+ L+++L
Sbjct: 50 EDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGKKVVDVLSLGPQERRALLERL 109
Query: 58 VKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLI 117
V+VA+ DNE+ LLKLK R+DRVGI +P IEVRFEHL EAE VG LPT N N +
Sbjct: 110 VRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEAEAEVRVGNSGLPTVLNSMTNKL 169
Query: 118 EGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL 177
EG N L ILP++K+ IL DV+GIVKP R+TLLLGPP SGKTTLLLALAG+L +K
Sbjct: 170 EGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGPPGSGKTTLLLALAGRLGKDIKF 229
Query: 178 SGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 237
SG+VTYNGH M++FVPQRTAAYISQHD+HIGEMTVRETL+FSARCQGVGSR+DML ELSR
Sbjct: 230 SGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTELSR 289
Query: 238 REKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297
REK ANIKPD DID FMKA A EGQE +++TDY++K+LGLD+CADTMVGD+M+RGISGGQ
Sbjct: 290 REKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGLDICADTMVGDDMVRGISGGQ 349
Query: 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPET 357
RKRVTTGEMLVGPA ALFMDEISTGLDSSTTFQIV SLRQ IHIL GTAVISLLQPAPET
Sbjct: 350 RKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQAIHILGGTAVISLLQPAPET 409
Query: 358 YDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVR 417
YDLFDDIIL+S+GQIV+QGPRE VLEFF+ MGF+CP+RKGVADFLQEVTS+KDQ+QYW++
Sbjct: 410 YDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQYWMQ 469
Query: 418 KEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKAC 477
++PYR+V VK+F+ AFQ+FH G+ + + L TPFDKSK+HPAALTT YG++ ELLKA
Sbjct: 470 HDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNHPAALTTSRYGVSAMELLKAN 529
Query: 478 ISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMI 537
I RE LLMKRNSFVYIF+ QL + I+MT+FFRTKMHRDSVT+G I++GALFF+++MI
Sbjct: 530 IDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHRDSVTDGVIFMGALFFSVMMI 589
Query: 538 TFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIG 597
FNG++EL ++I KLPVF+KQRDL F+PAW Y +P+WILK+P++F+EV +V ++YYVIG
Sbjct: 590 MFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKIPMSFIEVGGFVFMSYYVIG 649
Query: 598 FDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSR 657
FDP+ GR FKQYLL++ +NQM++ LFR + R+M+VAN FGSF +L+ LGGF+L R
Sbjct: 650 FDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVANVFGSFMLLIFMVLGGFILVR 709
Query: 658 EDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPN--STEPLGVEVLKSRGFFTDA 715
E +KKWW W YW SP+MYAQN ++VNEFLG+SW KVL N S E LGV+ L+SRG F +A
Sbjct: 710 EKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETLGVQALRSRGVFPEA 769
Query: 716 YWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTGGTLQLSTC 774
WYW+G L G I+LFN F LAL++L P+G SQ +SEE + N G L + T
Sbjct: 770 KWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVSEEELKEKQANINGNVLDVDTM 829
Query: 775 GSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAAN-QPKRSGMVLPFEPLSLTFEDVV 833
+SS++L D + T +IA N QP + GMVLPF PLSLTF+++
Sbjct: 830 -ASSTNLAIVDNTE---------------TSSEIADNSQPTQRGMVLPFAPLSLTFDNIK 873
Query: 834 YSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 893
YSVDMPQEMK G+++D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 874 YSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 933
Query: 894 ITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMF 953
I GNI ISGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP DVDS TR+MF
Sbjct: 934 IEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMF 993
Query: 954 LEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
+EE+MELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 994 IEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLIS 1073
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLG SS LI
Sbjct: 1054 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSSELIK 1113
Query: 1074 YFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKP 1133
YFE I GV++IKDGYNPATWMLEVS+ SQE ALGVDF DIY+ SEL++RNKALI+ELS P
Sbjct: 1114 YFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQELSTP 1173
Query: 1134 APGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDL 1193
PGS +LYFPT+YS SF QC+ACLWK H SYWRNPPY A+R FTT IAL+FG++FWDL
Sbjct: 1174 PPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDL 1233
Query: 1194 GTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFA 1253
G KT K QDLFNAMGSMY+AV F+GV NS SVQPVV+VER VFYRE+AAGMYS+ YAF
Sbjct: 1234 GGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFG 1293
Query: 1254 QVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPN 1313
QV IE P+ VQ+++YG+IVY+MIGF+WTA KF WY+FFMF++FL FTFYGMM V +TP+
Sbjct: 1294 QVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPS 1353
Query: 1314 LHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTR 1373
H+A++VS AFYGIWN+FSGFIIPR ++PIWWRWY W P+AWTLYGLVASQFGDI T
Sbjct: 1354 YHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI-MTP 1412
Query: 1374 LESGETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
++ G VK F+ +YF FKH +LGV+A V VAFT+LF F+F I NFQ+R
Sbjct: 1413 MDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2012 bits (5213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 972/1437 (67%), Positives = 1150/1437 (80%), Gaps = 33/1437 (2%)
Query: 4 DEDDEEALIWAALEKLPTYNRLKKGILTASTGAANE-----------VDVHKLGLLERQR 52
+EDDEEAL WAAL+KLPTY+R++ IL G E VDVH LG ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 53 LIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNF 112
L+++LV+VAD DNE+ LLKLK R+ RVGI +P IEVRFEHL VEAE VG +PT N
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 113 CANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD 172
N IE N L ILP+RK+ IL D++GI+KP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLK 229
Query: 173 PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDML 232
LK SG+VTYNGH M++FVPQRTAAYISQHD+HIGEMTVRETL+FSARCQGVGSR+DML
Sbjct: 230 -DLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
EL+RREK ANIKPD D+D FMKA A EGQE++++TDY++K+LGL++CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
ISGGQRKRVTTGEMLVGPA A FMDEISTGLDSSTTFQIV SLRQ IHIL GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQ 412
PAPETYDLFDDIIL+S+G IV+QGPRE+VLEFF+ MGF+CP+RKGVADFLQEVTS+KDQ+
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 413 QYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKE 472
QYW + ++PYR+V +KEF+ AFQ+FH G+ + + L TPFDKSKSHPAALTT YG++ E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 473 LLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFF 532
LLKA I RELLL+KRNSFVYIF+ IQL ++MT+FFRTKMHRDSV +G I++GALFF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 533 TIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILN 592
++MI NG++EL ++I KLPVF+KQRDL F+PAW Y +P+WILK P++F+EV + ++
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 593 YYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGG 652
YYVIGFDPNVGR FKQYLL++ V+QM++ LFR + R+++VAN FGSF +L+ LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 653 FVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNS--TEPLGVEVLKSRG 710
F+L+R+ + KWW W YW SP+MYAQN ++VNEFLG+SW KVL NS E LGV+ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 711 FFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTGGTL 769
F +A WYW+G L G I+LFN F LAL++L P G SQ ISEE + N G L
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVL 828
Query: 770 QLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAAN-QPKRSGMVLPFEPLSLT 828
+ T SS +N+ ST T +IA N QP + GMVLPF PLSLT
Sbjct: 829 DVDTMASS-----------NNLAIVGSTG-----TGSEIADNSQPTQRGMVLPFTPLSLT 872
Query: 829 FEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888
FED+ YSVDMPQEMK G+++D+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 873 FEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGR 932
Query: 889 KTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSE 948
KTGGYI GNI ISGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP DVDS
Sbjct: 933 KTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSN 992
Query: 949 TRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
TR+MF+EE+MELVEL PLR +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 993 TRKMFIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 1052
Query: 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHS 1068
LDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLG HS
Sbjct: 1053 LDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHS 1112
Query: 1069 SHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIE 1128
S LI YFE I GV+KI DGYNPATWMLEV++ SQE AL VDF DIY+ SEL++RNKALI+
Sbjct: 1113 SELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQ 1172
Query: 1129 ELSKPAPGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGS 1188
ELS P PGS +LYFPTQYSQSF QC+ACLWKQH SYWRNPPY A+R FTT IAL+FG+
Sbjct: 1173 ELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGT 1232
Query: 1189 LFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSM 1248
+FWDLG K + QDLFNAMGSMY AV F+GV N SVQPVV+VER VFYRE+AAGMYS++
Sbjct: 1233 IFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSAL 1292
Query: 1249 AYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCV 1308
YAF QV IE P+ VQ+V+Y +IVY+MIGF+WT KF WY+FFMF++ L FTFYGMM V
Sbjct: 1293 PYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAV 1352
Query: 1309 AMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGD 1368
+TP+ H+A++VS AFY IWN+F+GF+I R P+WWRWY W P+AWTLYGL+ SQ+GD
Sbjct: 1353 GLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGD 1412
Query: 1369 IDDTRLESGETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
I T ++ G V F+ +YF FKH +LG +A V VAFT+LF F+F I NFQ+R
Sbjct: 1413 I-VTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1425 | ||||||
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.997 | 0.452 | 0.765 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.976 | 0.974 | 0.752 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.997 | 0.966 | 0.754 | 0.0 | |
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.969 | 0.970 | 0.754 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.986 | 0.974 | 0.743 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.995 | 0.978 | 0.725 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.995 | 0.977 | 0.757 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.978 | 0.976 | 0.736 | 0.0 | |
| 359482652 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.976 | 0.976 | 0.754 | 0.0 | |
| 359482654 | 1397 | PREDICTED: pleiotropic drug resistance p | 0.957 | 0.977 | 0.751 | 0.0 |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2263 bits (5865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1092/1427 (76%), Positives = 1247/1427 (87%), Gaps = 6/1427 (0%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SRDEDDEEAL WAALEKLPTYNR++KG+L S G A+EVD+H LG E++ L+++LVK+
Sbjct: 1720 SSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGFQEKKNLVERLVKI 1779
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKL+NR+DRVGI LPEIEVRFEHL ++AEA+VG RALP+F N IE
Sbjct: 1780 AEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALPSFIYSAFNQIEDI 1839
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
LN L ILPSRKKK TIL DV+GI+KP R+TLLLGPP+SGKTTLLLAL+GKLD SLK++G+
Sbjct: 1840 LNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGK 1899
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQGVG RYDML ELSRREK
Sbjct: 1900 VTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREK 1959
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
ANIKPDPDIDVFMKA+ATEGQ+ +V+TDY +K+LGL+VCADT+VGD+M+RGISGGQRKR
Sbjct: 1960 AANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKR 2019
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGP+ ALFMDEISTGLDSSTT+QIV SLRQ IHILNGTA+ISLLQPAPETYDL
Sbjct: 2020 VTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDL 2079
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIIL+S+ QIV+QGPRE VL+FF+SMGF CP+RKGVADFLQEVTS+KDQQQYW RK+E
Sbjct: 2080 FDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDE 2139
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PY FVTVKEF++AFQ+FH+G+KLG L TPFDK+KSHPAAL T+ YG+ KKELL ACISR
Sbjct: 2140 PYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISR 2199
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
E LLMKRNSFVYIFKL QL I ISMT+F RT+MH++S +G IY GALFFT++MI FN
Sbjct: 2200 EYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFN 2259
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
GM+EL+M+IAKLPVFYKQR L FYPAWAY LP+WILK+PI FVEVAVWV ++YYVIGFDP
Sbjct: 2260 GMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDP 2319
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
NVGR FKQYLLLVLVNQM+S LFR +AA GR+M+VANTFGSF++L+LFALGGFVLSRE++
Sbjct: 2320 NVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENV 2379
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQK-VLPNSTEPLGVEVLKSRGFFTDAYWYW 719
KKWW W YW SPLMYAQN + VNEFLG SW K +STE LGV VLKSRGFFT+AYWYW
Sbjct: 2380 KKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYW 2439
Query: 720 LGMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSS 778
+G L G IL+FNF + +AL++LN F QAVI+EES+ +++TGG ++LS+ S
Sbjct: 2440 IGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE----NSKTGGKIELSSHRRGS 2495
Query: 779 SHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDM 838
T S E RD I R S++ S E A + + GMVLPF+PLS+TF+D+ YSVDM
Sbjct: 2496 IDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFDDIRYSVDM 2555
Query: 839 PQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 898
P+EMK QGVL+D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI
Sbjct: 2556 PEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNI 2615
Query: 899 KISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIM 958
ISGYPKKQETFARISGYCEQNDIHSP+VT++ESLLYSAWLRLP DVDS+TR+MF+EE+M
Sbjct: 2616 NISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVM 2675
Query: 959 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
ELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 2676 ELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 2735
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAI 1078
RTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG EIYVGPLGRHSSHLI YF+ I
Sbjct: 2736 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFQGI 2795
Query: 1079 PGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSR 1138
GV+KIKDGYNPATWMLEV+SS+QE LGVDFT+IYK S+LYRRNK LI+ELS+PAPGS+
Sbjct: 2796 EGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSK 2855
Query: 1139 DLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTS 1198
DLYFPTQYSQSFFTQCMACLWKQ SYWRNPPYTAVRF FTT IAL+FG++FWDLGTK
Sbjct: 2856 DLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRK 2915
Query: 1199 KRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIE 1258
K+QDL NAMGSMY AV FLGVQNSSSVQPVVAVER VFYRE+AAGMYS+M YAFAQ L+E
Sbjct: 2916 KQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVE 2975
Query: 1259 IPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIAT 1318
IP+VF QAVVYGVIVYAMIGFEWTA KF WY+FFMF++ L FTFYGMM VA TPN HIA
Sbjct: 2976 IPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAA 3035
Query: 1319 VVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGE 1378
+V+ AFYG+WN+FSGFI+PRTRIP+WWRWYYWA P+AWTLYGLV SQFGDI D ++G+
Sbjct: 3036 IVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGD 3095
Query: 1379 TVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
TV+Q+L YFGF+HDFLGV+AAV V FTVLF+F+FA IKAFNFQRR
Sbjct: 3096 TVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2254 bits (5841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1071/1423 (75%), Positives = 1223/1423 (85%), Gaps = 31/1423 (2%)
Query: 4 DEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKVADV 63
++DDEEAL WAA+E+LPTY+RLKKG+LT S G ANE+DV LG E++ L+D+LVKVA+
Sbjct: 37 EDDDEEALKWAAIERLPTYDRLKKGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEE 96
Query: 64 DNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNC 123
DNE LLKLKNR+DRVGI LP IEVRFEHLNVE EA+VG RALPTFFNF +++EGFLN
Sbjct: 97 DNELFLLKLKNRIDRVGIELPMIEVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNF 156
Query: 124 LHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY 183
LHILPS KK +IL+DV+GI+KP R+TLLLGPP+SGKTTLLLALAGKLDP LK SGRVTY
Sbjct: 157 LHILPSGKKSLSILQDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTY 216
Query: 184 NGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
NGH M+EFVPQRTAAYISQHD HIGEMTVRETLAF+ARCQGVG RY+M+ EL RREK +N
Sbjct: 217 NGHEMNEFVPQRTAAYISQHDTHIGEMTVRETLAFAARCQGVGHRYEMISELLRREKASN 276
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
IKPDPDIDVFMKA+ATEGQEA+VVTDY++K+LGL+VCAD MVG+EMLRG+SGGQRKRVTT
Sbjct: 277 IKPDPDIDVFMKAMATEGQEANVVTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTT 336
Query: 304 GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363
GEMLVGPA ALFMDEISTGLDSSTT+QIV S++Q IHILNGTAVISLLQP PETY+LFDD
Sbjct: 337 GEMLVGPAKALFMDEISTGLDSSTTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDD 396
Query: 364 IILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYR 423
IIL+S+GQIV+QGPRE+VLEFF+ MGF+CP+RKGVADFLQEVTS+KDQ QYW K++PY
Sbjct: 397 IILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYS 456
Query: 424 FVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELL 483
FVTV+EF++AFQ+F VG++L L TPFDKSKSHPAALTTK YG+ K ELLKAC SRE+L
Sbjct: 457 FVTVREFAEAFQSFLVGRRLEAELSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREIL 516
Query: 484 LMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGMA 543
LMKRNSFVYIFKL QLTI +++MTLF RT+MHRDSVTNGGIYVGALFF+++ I FNG++
Sbjct: 517 LMKRNSFVYIFKLTQLTIMAMVAMTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLS 576
Query: 544 ELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVG 603
E+S++IAKLPVFYKQR L FYP WA+ LP WI K+PI V+VA+WV L YYVIGFDPNVG
Sbjct: 577 EISLTIAKLPVFYKQRSLLFYPPWAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVG 636
Query: 604 RAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKW 663
R FKQYLLL LV+QM+SGLFR +AA GR+M+VANTFGSFA+L LFALGGF+LSR++IKKW
Sbjct: 637 RFFKQYLLLALVSQMASGLFRFIAAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKW 696
Query: 664 WKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMA 723
W W YW SPLMY QN + VNEFLGNSW KVLP++TE LG++VL+SRGFFT AYWYW+G+
Sbjct: 697 WIWGYWISPLMYGQNAIVVNEFLGNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVG 756
Query: 724 GLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSSSHLT 782
L G LL+NF F LAL+FL P QAVISE+S SN +TG +QLS+
Sbjct: 757 ALVGFTLLYNFFFTLALTFLGPLQKPQAVISEDSASN-TSGKTGEVIQLSSVR------- 808
Query: 783 QSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEM 842
TE + N K+ GMVLPFEP S+TF D+ YSVDMPQEM
Sbjct: 809 ---------------------TELIVEENHQKQKGMVLPFEPHSITFNDIRYSVDMPQEM 847
Query: 843 KLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG 902
K QG +D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I+ISG
Sbjct: 848 KRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 907
Query: 903 YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE 962
+PKKQETFARISGYCEQNDIHSP+VTVYESLLYS+WLRLPP+V+SETR+MF+EE+MELVE
Sbjct: 908 FPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLPPEVNSETRKMFIEEVMELVE 967
Query: 963 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L PLRQ+LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR
Sbjct: 968 LTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1027
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVN 1082
NTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG EIYVGPLGRHS LI YFEAI GV
Sbjct: 1028 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSCQLIKYFEAIEGVP 1087
Query: 1083 KIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRDLYF 1142
IKDGYNPATWMLEVSSS+QE+ LG+DF IYK SELYRRNKALIEELS P GS DLYF
Sbjct: 1088 DIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRRNKALIEELSTPPLGSNDLYF 1147
Query: 1143 PTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQD 1202
PTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTT IALMFG++FWDLG+KT+KRQD
Sbjct: 1148 PTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVIALMFGTMFWDLGSKTTKRQD 1207
Query: 1203 LFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHV 1262
LFNAMGSMY A+ FLG+QN+SSVQPVVAVER VFYRE+AAGMYS + YAFAQV+IE+P++
Sbjct: 1208 LFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAAGMYSPLPYAFAQVVIELPYI 1267
Query: 1263 FVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSI 1322
F+QA VYG+IVYAMIGFEW+A KF WY+FFM+++ L +T+YGMM VA+TPN +A++VS
Sbjct: 1268 FLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTYYGMMAVAVTPNQQVASIVSS 1327
Query: 1323 AFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGETVKQ 1382
AFY IWN+FSGFIIPR RIP+WWRWY W P+A+TLYGLV+SQFGDI T LESGETV+
Sbjct: 1328 AFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQFGDIKHT-LESGETVED 1386
Query: 1383 FLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
F+RSYF FKH+ LG +AA F LF F FA IK FNFQRR
Sbjct: 1387 FVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2252 bits (5836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1090/1444 (75%), Positives = 1246/1444 (86%), Gaps = 23/1444 (1%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SRDEDDEEAL WAALEKLPTYNR++KG+L S G A+EVD+H LG E++ L+++LVK+
Sbjct: 32 SSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGFQEKKNLVERLVKI 91
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKL+NR+DRVGI LPEIEVRFEHL ++AEA+VG RALP+F N N IE
Sbjct: 92 AEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALPSFINSAFNQIEDI 151
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
LN L ILPSRKKK TIL DV+GI+KP R+TLLLGPP+SGKTTLLLAL+GKLD SLK++G+
Sbjct: 152 LNTLRILPSRKKKXTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGK 211
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQGVG RYDML ELSRREK
Sbjct: 212 VTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREK 271
Query: 241 DANIKPDPDIDVFMK-----------------ALATEGQEASVVTDYVIKVLGLDVCADT 283
ANIKPDPDIDVFMK A+ATEGQ+ +V+TDY +K+LGL+VCADT
Sbjct: 272 AANIKPDPDIDVFMKEQNLLSLEFLKVLIGLMAVATEGQKENVITDYTLKILGLEVCADT 331
Query: 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343
+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT+QIV SLRQ IHILN
Sbjct: 332 LVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILN 391
Query: 344 GTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQ 403
GTA+ISLLQPAPETYDLFDDIIL+S+ QIV+QGPRE VL+FF+SMGF CP+RKGVADFLQ
Sbjct: 392 GTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQ 451
Query: 404 EVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTT 463
EVTS+KDQQQYW RK+EPY FVTVKEF++AFQ+FH+G+KLG L TPFDK+KSHPAAL T
Sbjct: 452 EVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKT 511
Query: 464 KSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNG 523
+ YG+ KKELL ACISRE LLMKRNSFVYIFKL QL I ISMT+F RT+MH++S +G
Sbjct: 512 EKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDG 571
Query: 524 GIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFV 583
IY GALFFT++MI FNGM+EL+M+IAKLPVFYKQR L FYPAWAY LP+WILK+PI FV
Sbjct: 572 SIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFV 631
Query: 584 EVAVWVILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFA 643
EVAVWV ++YYVIGFDPNVGR FKQYLLLVLVNQM+S LFR +AA GR+M+VANTFGSF+
Sbjct: 632 EVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFS 691
Query: 644 MLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQK-VLPNSTEPLG 702
+L+LFALGGFVLSRE++KKWW W YW SPLMYAQN + VNEFLG SW K +STE LG
Sbjct: 692 LLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLG 751
Query: 703 VEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNEC 761
V VLKSRGFFT+AYWYW+G L G IL+FNF + +AL++LN F QAVI+EES+
Sbjct: 752 VAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE---- 807
Query: 762 DNRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLP 821
+++TGG ++LS+ S T S E R+ I R S++ S E A + + GMVLP
Sbjct: 808 NSKTGGKIELSSHRRGSIDQTASTERREEIGRSISSTSSSVRAEAIAEARRNNKKGMVLP 867
Query: 822 FEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 881
F+PLS+TFED+ YSVDMP+EMK QGVL+D+L LL GVSGAFRPGVLTALMGVSGAGKTTL
Sbjct: 868 FQPLSITFEDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTL 927
Query: 882 MDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 941
MDVLAGRKTGGYI GNI ISGYPKKQETFARI GYCEQNDIHSP+VT++ESLLYSAWLRL
Sbjct: 928 MDVLAGRKTGGYIEGNINISGYPKKQETFARIXGYCEQNDIHSPHVTIHESLLYSAWLRL 987
Query: 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001
P DVDS+TR+MF+EE+MELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 988 PADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061
MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG EIYV
Sbjct: 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYV 1107
Query: 1062 GPLGRHSSHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYR 1121
GPLGRHSSHLI YFE I GV+KIK GYNPATWMLEV++S+QE LGVDFT+IYK S+LYR
Sbjct: 1108 GPLGRHSSHLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSDLYR 1167
Query: 1122 RNKALIEELSKPAPGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTA 1181
RNK LI+ELS+PAPGS+DLYFPTQYSQSFFTQCMACLWKQ SYWRNPPYTAVRF FTT
Sbjct: 1168 RNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTF 1227
Query: 1182 IALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKA 1241
IAL+FG++FWDLGTK K+QDL NAMGSMY AV FLGVQNSSSVQPVVAVER VFYRE+A
Sbjct: 1228 IALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERA 1287
Query: 1242 AGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFT 1301
AGMYS+M YAFAQ L+EIP+VF QAVVYGVIVYAMIGFEWTA KF WY+FFMF++ L FT
Sbjct: 1288 AGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFT 1347
Query: 1302 FYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGL 1361
FYGMM VA TPN HIA +V+ AFYG+WN+FSGFI+PRTRIP+WWRWYYWA P+AWTLYGL
Sbjct: 1348 FYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGL 1407
Query: 1362 VASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFN 1421
V SQFGDI D ++G+TV+Q+L YFGF+HDFLGV+AAV V FT+LF+F+FA IKAFN
Sbjct: 1408 VTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTILFLFIFAFAIKAFN 1467
Query: 1422 FQRR 1425
FQRR
Sbjct: 1468 FQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2242 bits (5810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1423 (75%), Positives = 1227/1423 (86%), Gaps = 41/1423 (2%)
Query: 5 EDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKVADVD 64
+DDEEAL WAALEKLPTY+RL+KGILT STGAA+EV+V LG ER+ L+++LV VA+ D
Sbjct: 41 DDDEEALKWAALEKLPTYDRLRKGILTTSTGAASEVEVQNLGFQERKNLVERLVNVAEED 100
Query: 65 NEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCL 124
NE+ LLKLKNR+DRVGI +P IEVRFEHLNVEAEAYVG RALPTFFN+ N++EG LN L
Sbjct: 101 NEKFLLKLKNRIDRVGIHVPTIEVRFEHLNVEAEAYVGSRALPTFFNYSVNMLEGVLNYL 160
Query: 125 HILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184
HIL SRKK ILKDV+GI+KPSR+TLLLGPP+SGKTTLLLALAGKLD +LK SGRVTYN
Sbjct: 161 HILSSRKKHMWILKDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDHALKFSGRVTYN 220
Query: 185 GHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
GH MDEFVPQRTAAYISQHD+HIGEMTVRETLAFSARCQGVGSRYDML ELSRREK+A I
Sbjct: 221 GHEMDEFVPQRTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRYDMLAELSRREKEAGI 280
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
KPDPDIDVFMKA ATEGQE SVV DY++KVLGL+VCADT+VGDEMLRGISGGQ+KRVTTG
Sbjct: 281 KPDPDIDVFMKAAATEGQEDSVVIDYILKVLGLEVCADTLVGDEMLRGISGGQKKRVTTG 340
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364
EMLVGPA ALFMDEISTGLDSSTT+QIV S++Q + IL GTA+ISLLQPAPETYDLFDDI
Sbjct: 341 EMLVGPAKALFMDEISTGLDSSTTYQIVNSIKQYVQILEGTALISLLQPAPETYDLFDDI 400
Query: 365 ILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRF 424
IL+S+G+IV+QGPREHVL FF+ MGF+CP RKGVADFLQEVTS+KDQ QYW R++ PYRF
Sbjct: 401 ILLSDGEIVYQGPREHVLRFFEYMGFKCPARKGVADFLQEVTSRKDQMQYWARRDVPYRF 460
Query: 425 VTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLL 484
VTVKEF++AF +FH G++LG+ L PFDKSK+HPAALTTK YG+NK+EL KA SRE LL
Sbjct: 461 VTVKEFAEAFYSFHEGKRLGNELAVPFDKSKNHPAALTTKKYGVNKRELCKASFSREFLL 520
Query: 485 MKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGMAE 544
MKRNSFVY FK IQLTI VI+MTLF RT+MHRDSVT+GGIYVGA+FF +++I FNGMAE
Sbjct: 521 MKRNSFVYAFKFIQLTIVAVIAMTLFLRTEMHRDSVTDGGIYVGAMFFIVVVIMFNGMAE 580
Query: 545 LSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGR 604
+SM++AKLPVFYKQRDL F+PAW Y LPTWILK+PI F+EVA+ V + Y+VIGFDPNVGR
Sbjct: 581 ISMTLAKLPVFYKQRDLLFFPAWIYALPTWILKIPITFIEVAIMVFITYFVIGFDPNVGR 640
Query: 605 AFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWW 664
FK YL+L+L NQM+SGLFR +AA GR+MVVANTFGSF +L+LF LGGFVLSR+DIKKWW
Sbjct: 641 LFKHYLVLLLTNQMASGLFRTIAAVGRNMVVANTFGSFVLLLLFVLGGFVLSRDDIKKWW 700
Query: 665 KWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAG 724
W +W SP+MYAQN + VNEFLG SW VLPNSTEPLG+EVLKSRGFFT+AYWYWL +A
Sbjct: 701 IWGFWTSPMMYAQNAVVVNEFLGKSWNHVLPNSTEPLGIEVLKSRGFFTEAYWYWLAVAA 760
Query: 725 LAGSILLFNFGFILALSFLNPFG--SQAVISEESQSNECDNRTGGTLQLSTCGSSSSHLT 782
L G LL+NF +ILAL+FLNP G QA ISEE QSN D S SS T
Sbjct: 761 LFGFTLLYNFLYILALAFLNPLGKPQQAGISEEPQSNNVDE---------IGRSKSSRFT 811
Query: 783 QSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEM 842
+ K+ G+++PFEP S+TF+ V+YSVDMPQEM
Sbjct: 812 CN-----------------------------KQRGVIIPFEPHSITFDKVMYSVDMPQEM 842
Query: 843 KLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG 902
K GV +DKLVLL GVSGAFRPGVLTALMG+SGAGKTT+MDVLAGRKTGGYI GNI ISG
Sbjct: 843 KSHGVHEDKLVLLKGVSGAFRPGVLTALMGISGAGKTTMMDVLAGRKTGGYIEGNITISG 902
Query: 903 YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE 962
YPKKQETFARISGYCEQNDIHSP++TVYESLLYSAWLRLP +VD ETR+MF+EE+MELVE
Sbjct: 903 YPKKQETFARISGYCEQNDIHSPHITVYESLLYSAWLRLPTEVDIETRKMFVEEVMELVE 962
Query: 963 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LNPLRQ+LVGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR
Sbjct: 963 LNPLRQALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVN 1082
NTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG EIYVGPLGR S HLI YFE I GVN
Sbjct: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRLSCHLIKYFEGIEGVN 1082
Query: 1083 KIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRDLYF 1142
KIKDGYNPATWMLEV+S+++ELALGVDF +IY+ SEL+RRN+ALI++LS PAPGS+DLYF
Sbjct: 1083 KIKDGYNPATWMLEVTSTAEELALGVDFAEIYRSSELFRRNRALIKDLSTPAPGSKDLYF 1142
Query: 1143 PTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQD 1202
TQYS+SFFTQC+ACLWKQHWSYWRNPPYTA+RFL TT I L+FG++FWD+G+K +KRQD
Sbjct: 1143 STQYSRSFFTQCLACLWKQHWSYWRNPPYTAIRFLSTTVIGLIFGTMFWDIGSKITKRQD 1202
Query: 1203 LFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHV 1262
LFNAMGSMYTAV FLGVQN++SVQPVVAVER VFYRE+AAGMYS++ YAFAQVLIE+P++
Sbjct: 1203 LFNAMGSMYTAVLFLGVQNAASVQPVVAVERTVFYRERAAGMYSALPYAFAQVLIELPYI 1262
Query: 1263 FVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSI 1322
FVQA VYGVIVY+MIGF WT KF WY++FM+++ L FTFYGMM VA++PN IA+V+S
Sbjct: 1263 FVQAAVYGVIVYSMIGFGWTISKFFWYLYFMYFTLLYFTFYGMMAVAVSPNHQIASVISA 1322
Query: 1323 AFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGETVKQ 1382
AFYGIWNVFSGF+IPR+R+P+WWRWY W P+ WTLYGLVASQFGD+ D RLE+GETV+Q
Sbjct: 1323 AFYGIWNVFSGFVIPRSRMPLWWRWYSWICPVFWTLYGLVASQFGDMKD-RLETGETVEQ 1381
Query: 1383 FLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
F+ Y FKHDFLGV+AAV + FTVLF FA+ IK FNFQRR
Sbjct: 1382 FVTIYLDFKHDFLGVVAAVILGFTVLFAITFAISIKLFNFQRR 1424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2240 bits (5805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1062/1429 (74%), Positives = 1233/1429 (86%), Gaps = 23/1429 (1%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGIL-TASTGAANEVDVHKLGLLERQRLIDKLVK 59
+SR+EDDEEAL WAALE+LPTY+RL+KGIL +AS ANE+DV LG ER+ L+++L++
Sbjct: 34 SSREEDDEEALKWAALERLPTYDRLRKGILFSASRNGANEIDVGSLGFHERKLLLERLLR 93
Query: 60 VADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEG 119
V + DNE+ LLKLKNR+DRVGI LP IEVRFE+LN+EAEA+VG RALPTF NF NL EG
Sbjct: 94 VVEEDNEEFLLKLKNRIDRVGIELPTIEVRFENLNIEAEAFVGSRALPTFVNFSINLFEG 153
Query: 120 FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG 179
FLN LHILPSRKK+ TILKDV+G++KPSR+TLLLGPP+SGKTTLLLALAGKLDP+LK SG
Sbjct: 154 FLNSLHILPSRKKQLTILKDVSGVIKPSRMTLLLGPPSSGKTTLLLALAGKLDPNLKFSG 213
Query: 180 RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 239
VTYNGH M+EF+PQ TAAYISQHD+HIGEMTVRETL+FS RCQGVG+R DMLVELSRRE
Sbjct: 214 NVTYNGHGMNEFIPQSTAAYISQHDLHIGEMTVRETLSFSVRCQGVGTRNDMLVELSRRE 273
Query: 240 KDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRK 299
K ANIKPDPDIDVFMKA+ATEGQE +VVTDYV+K+LGL+VCADT+VGDEMLRGISGGQRK
Sbjct: 274 KAANIKPDPDIDVFMKAVATEGQETNVVTDYVLKILGLEVCADTLVGDEMLRGISGGQRK 333
Query: 300 RVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD 359
RVTTGEMLVGPA ALFMDEISTGLDSSTT+QIV SL+Q IHIL+GTAVISLLQPAPETYD
Sbjct: 334 RVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILDGTAVISLLQPAPETYD 393
Query: 360 LFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKE 419
LFDDIIL+S+GQIV+QGPREHVLEFF+ MGF+CP+RKGVADFLQEVTSK DQ+QYWV+K+
Sbjct: 394 LFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQEVTSKNDQKQYWVQKD 453
Query: 420 EPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACIS 479
+PY FVTV+EFS+AFQ++ VGQ +G L TPFDKSKSHPAAL + YG++K ELLKAC +
Sbjct: 454 QPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAARKYGVDKMELLKACFA 513
Query: 480 RELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITF 539
RE LLMKRNSFVYIFKL QL + +ISMTLF RT+MHR+ +T+ G+Y+GALFF++I I F
Sbjct: 514 REYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDAGVYLGALFFSLIAIMF 573
Query: 540 NGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFD 599
NGM+ELSM+IAKLPVFYKQRDL+FYP WAY LPTWILK+PI F EV VWV + YYVIGFD
Sbjct: 574 NGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFFEVGVWVFITYYVIGFD 633
Query: 600 PNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSRED 659
PNV R FKQY LL++VNQM+SGLFR +AA GR+M+VANTFGSFA+L +FALGG VLSR+D
Sbjct: 634 PNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFALLTVFALGGIVLSRDD 693
Query: 660 IKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPN--STEPLGVEVLKSRGFFTDAYW 717
IKKWW W YW SP+MY QN L NEFLG SW V N ST+ LGV+ +KSRGFF AYW
Sbjct: 694 IKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSLGVQFIKSRGFFPHAYW 753
Query: 718 YWLGMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGS 776
YW+G+ L G +LFN F LAL+ LNP+ AVIS+E E +RTGG +QLS GS
Sbjct: 754 YWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDEP---ERSDRTGGAIQLSQNGS 810
Query: 777 SSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSV 836
S +T++ + +T+E ANQ K+ GMVLPFEP S+TF DV+YSV
Sbjct: 811 SHRTITEN-------------GVGIRMTDE---ANQNKKKGMVLPFEPHSITFNDVMYSV 854
Query: 837 DMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 896
DMPQEMK QG+ DDKLVLL GVSGAF+PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G
Sbjct: 855 DMPQEMKSQGIADDKLVLLKGVSGAFKPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 914
Query: 897 NIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE 956
+I+ISGYPKKQ+TFARISGYCEQNDIHSP+VTVYESL+YSAWLRL P+VD ETR+MF+ E
Sbjct: 915 DIRISGYPKKQDTFARISGYCEQNDIHSPHVTVYESLIYSAWLRLAPEVDPETRKMFVNE 974
Query: 957 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
+MELVELNPLRQ+LVGLPGV+GLSTEQRKRLTI+VELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 975 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTISVELVANPSIIFMDEPTSGLDARAAAI 1034
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFE 1076
VMRTVRNTVDTGRTVVCTIHQPSID+FEAFDELFLMKRGG EIYVGPLGRHS H+I YFE
Sbjct: 1035 VMRTVRNTVDTGRTVVCTIHQPSIDLFEAFDELFLMKRGGEEIYVGPLGRHSCHMIDYFE 1094
Query: 1077 AIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPG 1136
I G +K+KDGYNPATWMLEV+SS+QEL+LGVDF IYK SELYRRNKA+I+ELS PG
Sbjct: 1095 VIEGASKVKDGYNPATWMLEVTSSAQELSLGVDFATIYKNSELYRRNKAIIKELSTSVPG 1154
Query: 1137 SRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTK 1196
S+DLYFPTQYSQSF TQC+ACLWKQ SYWRNPPYTAVRFLFTT IALMFG++FWDLG+K
Sbjct: 1155 SKDLYFPTQYSQSFLTQCIACLWKQRLSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGSK 1214
Query: 1197 TSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVL 1256
T +QD+FN+ GSMY AV FLG QN++SVQPVVA+ER VFYRE+AAGMYS++ YA+AQVL
Sbjct: 1215 TRTQQDIFNSAGSMYAAVVFLGTQNAASVQPVVAIERTVFYRERAAGMYSALPYAYAQVL 1274
Query: 1257 IEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHI 1316
+EIP++F QAVVYG++ Y+MIGFEWTA KF WYIFFM+++ + FT+YGMM VA+TPN HI
Sbjct: 1275 VEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFWYIFFMYFTLMYFTYYGMMAVAVTPNHHI 1334
Query: 1317 ATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLES 1376
A+VVS AFYGIWN+FSGFI+PRTR+P+WWRWYYW P++WTLYGL+ SQF DI D
Sbjct: 1335 ASVVSSAFYGIWNLFSGFIVPRTRMPVWWRWYYWVCPVSWTLYGLIGSQFSDIKDAFEGG 1394
Query: 1377 GETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
+TV+ F+R Y+G +HDFLGV+AAV V TVLF F+FA+ IK+FNFQRR
Sbjct: 1395 SQTVEDFVREYYGIRHDFLGVVAAVIVGTTVLFAFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2234 bits (5790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1035/1426 (72%), Positives = 1233/1426 (86%), Gaps = 8/1426 (0%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SRDEDDEEAL WAALEKLPTY R+++GIL G + E+D++ LGL+E++ L+++LVK+
Sbjct: 31 SSRDEDDEEALKWAALEKLPTYLRIRRGILIEQGGQSREIDINSLGLIEKRNLLERLVKI 90
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKLK+R+D+VG+ +P IEVRFEHL+VEAEAYVG RALPT FNF N+ E F
Sbjct: 91 AEEDNEKFLLKLKDRIDKVGLDMPTIEVRFEHLSVEAEAYVGSRALPTMFNFSVNMFEAF 150
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
LN LHILPSRKK +IL DV+GI+KP R+TLLLGPP+SGKTTLLLALAGKL LK SGR
Sbjct: 151 LNYLHILPSRKKPLSILNDVSGIIKPRRMTLLLGPPSSGKTTLLLALAGKLTKDLKFSGR 210
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH M+EFVPQRT+AYISQ+D+HIGEMTVRETLAFSARCQGVGSRY+ML+EL+RREK
Sbjct: 211 VTYNGHGMEEFVPQRTSAYISQYDIHIGEMTVRETLAFSARCQGVGSRYEMLMELARREK 270
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
+ANIKPDPDID++MKA A EGQEA+VVTDY++K+LGL++CADT+VGDEM RGISGGQ+KR
Sbjct: 271 EANIKPDPDIDIYMKAAALEGQEANVVTDYILKILGLELCADTLVGDEMARGISGGQKKR 330
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGPA ALFMDEISTGLDS+TTFQIV SLRQ +HIL+GTA+I+LLQPAPET++L
Sbjct: 331 VTTGEMLVGPAKALFMDEISTGLDSTTTFQIVNSLRQSVHILSGTALIALLQPAPETFEL 390
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIIL+S+GQIV+QGPRE+VL+FF+ MGF+CP+RKGVADFLQEVTS+KDQ+QYW K++
Sbjct: 391 FDDIILLSDGQIVYQGPRENVLDFFEYMGFKCPERKGVADFLQEVTSRKDQEQYWAHKDQ 450
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PY FV+V EFS+AFQ+FH+G+KLGD L TPFDKSK+HP +LTTK YG++KKEL KACISR
Sbjct: 451 PYLFVSVNEFSEAFQSFHIGRKLGDELATPFDKSKAHPDSLTTKKYGVSKKELFKACISR 510
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
E LLMKRNSFVYIFK+ QL I G I+MTLF RT+MHR++ T+GG+Y+GALFFT+ I FN
Sbjct: 511 EYLLMKRNSFVYIFKMTQLIILGFITMTLFLRTEMHRNTETDGGVYLGALFFTVTTIMFN 570
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
G +EL+M+I KLPVFYKQRDL FYP+WAY LPTWILK+PI FVEVAVWV++ YYVIGFDP
Sbjct: 571 GFSELAMTILKLPVFYKQRDLLFYPSWAYALPTWILKIPITFVEVAVWVVMTYYVIGFDP 630
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
N+ R FKQYL+L++ NQM+S LFRL AA GR+++VANT G+FAML LGGFV+SR+++
Sbjct: 631 NIQRFFKQYLILLITNQMASALFRLTAALGRNIIVANTVGAFAMLTALVLGGFVISRDNV 690
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWL 720
KKWW W YW SP+MY QN ++VNEFLG+SW PNST+PLGV +LKSRG F +AYWYW+
Sbjct: 691 KKWWIWGYWFSPMMYVQNAISVNEFLGSSWNHFPPNSTKPLGVTLLKSRGLFPEAYWYWI 750
Query: 721 GMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSSS 779
G L G I LFNF F LAL +L+PFG QA+IS+E+ S + RTG ++LS+ +
Sbjct: 751 GFGALTGYIFLFNFLFTLALKYLDPFGKPQAIISKEAYSEKTAVRTGEFIELSS--KEKN 808
Query: 780 HLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
+ S R S+++ SL+ A + + GMVLPF+PLS+TF DV Y+V MP
Sbjct: 809 FQERGSASHRVASSRTSSARVSSLSN----AFENSKRGMVLPFQPLSITFADVRYAVQMP 864
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
QEMK QG+ +D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI
Sbjct: 865 QEMKTQGITEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIT 924
Query: 900 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
ISGYPKKQETFARISGYCEQ DIHSP+VTVYESLLYSAWLRLPP+VDS+TR MF+EE+ME
Sbjct: 925 ISGYPKKQETFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEVDSDTRNMFVEEVME 984
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
LVEL LR++LVGLPGV+GLS EQRKRLT+AVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 985 LVELTSLREALVGLPGVNGLSVEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMR 1044
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079
TVRNTVDTGRTVVCTIHQPSIDIF+AFDEL L+KRGG EIYVGP+GRH+ HLI YFE I
Sbjct: 1045 TVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPVGRHACHLIKYFEDIE 1104
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRD 1139
G+ KIKDGYNPATWMLEV++++QE+ALGVDF+DIYK SELYR+NKALI+ELS+P PGS+D
Sbjct: 1105 GIPKIKDGYNPATWMLEVTTTAQEVALGVDFSDIYKNSELYRKNKALIKELSRPLPGSKD 1164
Query: 1140 LYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSK 1199
LYFPTQYS+SF TQCMACLWKQHWSYWRNPPYTAVR +F T IALMFG++FW LGTK S+
Sbjct: 1165 LYFPTQYSKSFTTQCMACLWKQHWSYWRNPPYTAVRLVFATFIALMFGTIFWKLGTKRSR 1224
Query: 1200 RQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEI 1259
RQD+FNAMGSMY AV FLG NS++VQPVVA+ER VFYRE+AAGMYS++AYAF QV+IE+
Sbjct: 1225 RQDIFNAMGSMYAAVLFLGFHNSTAVQPVVAIERTVFYRERAAGMYSALAYAFGQVMIEV 1284
Query: 1260 PHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATV 1319
P++ +Q ++YGVIVYAM+GFEWT KF WY+FFM+++ L FTFYGMM VA+TPN +IA +
Sbjct: 1285 PYILIQTIIYGVIVYAMVGFEWTISKFFWYLFFMYFTLLYFTFYGMMNVAITPNHNIAAI 1344
Query: 1320 VSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGET 1379
VS AFY IWN+FSGFI+PRTRIPIWWRWYYWA PIAWTLYGLVASQFGDI + L++GET
Sbjct: 1345 VSSAFYAIWNIFSGFIVPRTRIPIWWRWYYWACPIAWTLYGLVASQFGDIKE-ELDTGET 1403
Query: 1380 VKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
V+ FLRSYFGF+HDF+G++A V V VLF F+FA I+ FNFQRR
Sbjct: 1404 VEHFLRSYFGFQHDFVGIVAVVLVGICVLFGFLFAFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2232 bits (5785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1081/1427 (75%), Positives = 1239/1427 (86%), Gaps = 9/1427 (0%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SRDEDDEEAL WAALEKLPTYNR++KG+L S G A+EVD+H LG E++ L+++LVK+
Sbjct: 32 SSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGFQEKKNLVERLVKI 91
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKL+NR+DRVGI LPEIEVRFEHL ++AEA+VG RALP+F N N IE
Sbjct: 92 AEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALPSFINSAFNQIEDI 151
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
LN L ILPSRKKKFTIL DV+GI+KP R+TLLLGPP+SGKTTLLLAL+GKLD SLK++G+
Sbjct: 152 LNTLRILPSRKKKFTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGK 211
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQGVG RYDML ELSRREK
Sbjct: 212 VTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREK 271
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
ANIKPDPDIDVFMKA ATEGQ+ +V+TDY +K+LGL+VCADT+VGD+M+RGISGGQRKR
Sbjct: 272 AANIKPDPDIDVFMKAAATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKR 331
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGP+ ALFMDEISTGLDSSTT+QIV SLRQ IHILNGTA+ISLLQPAPETYDL
Sbjct: 332 VTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDL 391
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIIL+S+ QIV+QGPRE VL+FF+SMGF CP+RKGVADFLQEVTS+KDQQQYW RK+E
Sbjct: 392 FDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDE 451
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PY FVTVK+F++AFQ+FH G+K+GD L TPFDK+KSHPAAL T+ YG+ KKELL ACISR
Sbjct: 452 PYSFVTVKQFAEAFQSFHSGRKVGDELATPFDKTKSHPAALKTEKYGVRKKELLDACISR 511
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
E LMKRNSFVYI +L QL I ISMT+F RT+MH++S +G IY+GALFFT++MI FN
Sbjct: 512 EYWLMKRNSFVYILQLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYMGALFFTVVMIMFN 571
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
GM+EL+M+IAKLPVFYKQR L FYPAWAY L +WILK+PI FVEVAVWV ++YYVIGFDP
Sbjct: 572 GMSELAMTIAKLPVFYKQRGLLFYPAWAYALSSWILKIPITFVEVAVWVFMSYYVIGFDP 631
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
NVGR FKQYLLLVLVNQM+S LFR +AA GR+M+VANTFGSF++L+LFALGGFVLSRE++
Sbjct: 632 NVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENV 691
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQK-VLPNSTEPLGVEVLKSRGFFTDAYWYW 719
KKWW W YW SPLMYAQN + VNEFLG SW K NSTE LGV VLKSRGFFT+AYWYW
Sbjct: 692 KKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTNSTESLGVAVLKSRGFFTEAYWYW 751
Query: 720 LGMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSS 778
+G L G IL+FNF + +AL++LN F QAVI+EES+ +++TGG ++LS+ S
Sbjct: 752 IGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE----NSKTGGKIELSSHRRGS 807
Query: 779 SHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDM 838
T S D I R S++ S E A + + GMVLPF+PLS+TF+D+ YSVDM
Sbjct: 808 IDQTAST---DEIGRSISSTSSSVRAEAIAEARRNTKRGMVLPFQPLSITFDDIRYSVDM 864
Query: 839 PQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 898
P+EMK QGVL+D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI
Sbjct: 865 PEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNI 924
Query: 899 KISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIM 958
ISGYPKKQETF RISGYCEQNDIHSP+VT++ESLLYSAWLRLP DVDS+TR+MF+E++M
Sbjct: 925 NISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEKVM 984
Query: 959 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
ELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 985 ELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1044
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAI 1078
RTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG EIYVG LGRHSS LI YFE I
Sbjct: 1045 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGLLGRHSSCLIKYFEGI 1104
Query: 1079 PGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSR 1138
GV+KIK GYNPATWMLEV++S+QE LGVDFT+IYK S LYRRNK LI+ELS+PAPGS+
Sbjct: 1105 EGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSNLYRRNKDLIKELSQPAPGSK 1164
Query: 1139 DLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTS 1198
DLYFPTQYSQSFFTQCMACLWKQ SYWRNPPYTAVRF FTT IAL+FG++FWDLGTK +
Sbjct: 1165 DLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRT 1224
Query: 1199 KRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIE 1258
K+QDL NAMGSMY AV FLGVQNSSSVQPVVAVER VFYRE+AAG+YS+M YAFA L+E
Sbjct: 1225 KQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGIYSAMPYAFAHALVE 1284
Query: 1259 IPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIAT 1318
IP+VF QAVVYGVIVYAMIGFEWTA KF WY+FFMF++ L FTFYGMM VA TPN HIA
Sbjct: 1285 IPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAA 1344
Query: 1319 VVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGE 1378
+V+ AFYG+WN+FSGFI+PRTRIP+WWRWYYWA P+AWTLYGLV SQFGDI D ++G+
Sbjct: 1345 IVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGD 1404
Query: 1379 TVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
TV+Q+L YFGF+HDFLGV+AAV V FTVLF+F+FA IKAFNFQRR
Sbjct: 1405 TVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2229 bits (5775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1051/1427 (73%), Positives = 1221/1427 (85%), Gaps = 33/1427 (2%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SR+EDDEEAL WAALEKLPTYNRL+KG+LTAS G ANE+DV LG+ ERQ+L+++LVKV
Sbjct: 32 SSREEDDEEALKWAALEKLPTYNRLRKGLLTASHGVANEIDVSDLGIQERQKLLERLVKV 91
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKLK R+DRVG+ +P IEVR+EHLN+EAEA+VG RALP+F N N++EGF
Sbjct: 92 AEEDNERFLLKLKERIDRVGLDIPTIEVRYEHLNIEAEAFVGSRALPSFINSVTNVVEGF 151
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
N LH+ S+KK TILKDV+GI+KP R+TLLLGPP+SGKTTLLLAL+GKLD +LK+SGR
Sbjct: 152 FNLLHVSTSKKKHVTILKDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDKTLKVSGR 211
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH ++EFVPQRTAAYISQHD+HIGEMTVRETLAFSARCQGVGSRYDML ELSRREK
Sbjct: 212 VTYNGHELNEFVPQRTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRYDMLSELSRREK 271
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
ANIKPDPD+DV+MKA ATEGQE+++VTDY +K+LGLD+CADTMVGDEMLRGISGGQRKR
Sbjct: 272 AANIKPDPDLDVYMKATATEGQESNIVTDYTLKILGLDICADTMVGDEMLRGISGGQRKR 331
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGPA ALFMDEISTGLDSSTTFQIV+SLR +HILNGTAVISLLQPAPETYDL
Sbjct: 332 VTTGEMLVGPANALFMDEISTGLDSSTTFQIVSSLRHYVHILNGTAVISLLQPAPETYDL 391
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIILIS+GQ+V+ GPRE+VL+FF+SMGF CP+RKGVADFLQEVTSKKDQ QYWVR+++
Sbjct: 392 FDDIILISDGQVVYHGPREYVLDFFESMGFRCPERKGVADFLQEVTSKKDQAQYWVRRDQ 451
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PYRFVTV +F++AFQ+FH+G KLG+ L PFD++KSHPAALTTK YGINKKELLKA SR
Sbjct: 452 PYRFVTVTQFAEAFQSFHIGGKLGEELTVPFDRTKSHPAALTTKKYGINKKELLKANFSR 511
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
E LLMKRNSFVY+FKL QL I +++MTLF RT+MH +++ + G+Y GA+FF +I + FN
Sbjct: 512 EYLLMKRNSFVYLFKLSQLFIMALVAMTLFLRTEMHHENMDDAGVYAGAVFFMLITVMFN 571
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
G+AE+SM+IAKLPVFYKQR+L FYP+WAY +P+WILK+P+ VEVAVWV L YYVIGFDP
Sbjct: 572 GLAEISMTIAKLPVFYKQRNLLFYPSWAYAIPSWILKIPVTIVEVAVWVFLTYYVIGFDP 631
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
NVGR FKQYL+L++V+QM+SGLFR +AA GR+M+VANTFG+FA++ + ALGGF+LS+ DI
Sbjct: 632 NVGRFFKQYLVLLIVSQMASGLFRTIAALGRNMIVANTFGAFAIITVVALGGFILSKRDI 691
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWL 720
K WW W YW SPLMY QN L VNEFL NSW N+T LGVE L+SR FFTD+YWYWL
Sbjct: 692 KSWWIWGYWISPLMYGQNALMVNEFLSNSWH----NATHNLGVEYLESRAFFTDSYWYWL 747
Query: 721 GMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSSS 779
G+ L G + LFN F LAL FL PF QA I+E+ SNE GTL
Sbjct: 748 GLGALVGFVFLFNVMFGLALEFLGPFDKPQATITEDESSNE------GTL---------- 791
Query: 780 HLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
+D I S+ + SL E ++ K+ GMVLPFEP S+TF++VVYSVDMP
Sbjct: 792 ----ADIELPGI---ESSGRGDSLVE----SSHGKKKGMVLPFEPHSITFDEVVYSVDMP 840
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
QEMK QGV +D+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+IK
Sbjct: 841 QEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIK 900
Query: 900 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
ISGYPKKQETFARISGYCEQNDIHSP+VTVYESLLYSAWLRLP VDS+TR+MF+EE+ME
Sbjct: 901 ISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSKTRKMFIEEVME 960
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
LVELNP+R SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 961 LVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1020
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGRHSSHLI YFE+I
Sbjct: 1021 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKYFESIE 1080
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRD 1139
GV+KIKDGYNPATWMLEV++++QEL+LGVDFTD+YK S+LYRRNK LI+EL +PAPGS+D
Sbjct: 1081 GVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRNKQLIQELGQPAPGSKD 1140
Query: 1140 LYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSK 1199
L+FPTQYSQSF QC ACLWKQ WSYWRNPPYTAVRF FTT IALMFG++FWDLG K S
Sbjct: 1141 LHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTIFWDLGGKHST 1200
Query: 1200 RQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEI 1259
R DL NA+GSMYTAV FLGVQN+SSVQPVVA+ER VFYREKAAGMYS++ YAFAQ+L+E+
Sbjct: 1201 RGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAGMYSALPYAFAQILVEL 1260
Query: 1260 PHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATV 1319
P+VFVQAV YGVIVYAMIGFEWTA KF WY+FFM+++ L +TFYGMM V +TPN HIA++
Sbjct: 1261 PYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMMTVGLTPNHHIASI 1320
Query: 1320 VSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGET 1379
V+ AFY +WN+FSGF++ R IP+WWRWYYWA P+AWT+YGLVASQFGD+ + G+
Sbjct: 1321 VAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVASQFGDLTEPMTSEGQK 1380
Query: 1380 -VKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
VK FL Y+G KHDF+GV A V VLF +FA+ IK FNFQ+R
Sbjct: 1381 IVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482652|ref|XP_003632801.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2224 bits (5763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1078/1428 (75%), Positives = 1234/1428 (86%), Gaps = 36/1428 (2%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SRDEDDEEAL WAALEKLPTYNR++KG+L S G A+EVD+H LG E++ L+++LVK+
Sbjct: 32 SSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGFQEKKNLVERLVKI 91
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKL+NR+DRVGI LPEIEVRFEHL ++AEA+VG RALP+F N N IE
Sbjct: 92 AEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALPSFINSAFNQIEDI 151
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
LN L ILPSRKKKFTIL DV+GI+KP R+TLLLGPP+SGKTTLLLAL+GKLD SLK++G+
Sbjct: 152 LNTLRILPSRKKKFTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGK 211
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQGVG RYDML ELSRREK
Sbjct: 212 VTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREK 271
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
ANIKPDPDIDVFMKA ATEGQ+ +V+TDY +K+LGL+VCADT+VGD+M+RGISGGQRKR
Sbjct: 272 AANIKPDPDIDVFMKAAATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKR 331
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGP+ ALFMDEISTGLDSSTT+QIV SLRQ IHILNGTA+ISLLQPAPETYDL
Sbjct: 332 VTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDL 391
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIIL+S+ QIV+QGPRE VL+FF+SMGF CP+RKGVADFLQEVTS+KDQQQYW RK+E
Sbjct: 392 FDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDE 451
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PY FVTVK+F++AFQ+FH G+K+GD L TPFDK+KSHPAAL T+ YG+ KKELL ACISR
Sbjct: 452 PYSFVTVKQFAEAFQSFHSGRKVGDELATPFDKTKSHPAALKTEKYGVRKKELLDACISR 511
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
E LMKRNSFVYI +L QL I ISMT+F RT+MH++S +G IY+GALFFT++MI FN
Sbjct: 512 EYWLMKRNSFVYILQLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYMGALFFTVVMIMFN 571
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
GM+EL+M+IAKLPVFYKQR L FYPAWAY L +WILK+PI FVEVAVWV ++YYVIGFDP
Sbjct: 572 GMSELAMTIAKLPVFYKQRGLLFYPAWAYALSSWILKIPITFVEVAVWVFMSYYVIGFDP 631
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
NVGR FKQYLLLVLVNQM+S LFR +AA GR+M+VANTFGSF++L+LFALGGFVLSRE++
Sbjct: 632 NVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENV 691
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQK-VLPNSTEPLGVEVLKSRGFFTDAYWYW 719
KKWW W YW SPLMYAQN + VNEFLG SW K NSTE LGV VLKSRGFFT+AYWYW
Sbjct: 692 KKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTNSTESLGVAVLKSRGFFTEAYWYW 751
Query: 720 LGMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTGGTLQLSTCGSSS 778
+G L G IL+FNF + +AL++LN F QAVI+EES+ +++TGG ++L S
Sbjct: 752 IGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE----NSKTGGKIEL------S 801
Query: 779 SHLTQS-DESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVD 837
SH ++ E+R N +R GMVLPF+PLS+TF+D+ YSVD
Sbjct: 802 SHRREAIAEARRNTKR-----------------------GMVLPFQPLSITFDDIRYSVD 838
Query: 838 MPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 897
MP+EMK QGVL+D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GN
Sbjct: 839 MPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGN 898
Query: 898 IKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI 957
I ISGYPKKQETF RISGYCEQNDIHSP+VT++ESLLYSAWLRLP DVDS+TR+MF+E++
Sbjct: 899 INISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEKV 958
Query: 958 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
MELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 959 MELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1018
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEA 1077
MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG EIYVG LGRHSS LI YFE
Sbjct: 1019 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGLLGRHSSCLIKYFEG 1078
Query: 1078 IPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGS 1137
I GV+KIK GYNPATWMLEV++S+QE LGVDFT+IYK S LYRRNK LI+ELS+PAPGS
Sbjct: 1079 IEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSNLYRRNKDLIKELSQPAPGS 1138
Query: 1138 RDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKT 1197
+DLYFPTQYSQSFFTQCMACLWKQ SYWRNPPYTAVRF FTT IAL+FG++FWDLGTK
Sbjct: 1139 KDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKR 1198
Query: 1198 SKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLI 1257
+K+QDL NAMGSMY AV FLGVQNSSSVQPVVAVER VFYRE+AAG+YS+M YAFA V I
Sbjct: 1199 TKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGIYSAMPYAFAHVTI 1258
Query: 1258 EIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIA 1317
EIP+VF QAVVYGVIVYAMIGFEWTA KF WY+FFMF++ L FTFYGMM VA TPN HIA
Sbjct: 1259 EIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIA 1318
Query: 1318 TVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESG 1377
+V+ AFYG+WN+FSGFI+PRTRIP+WWRWYYWA P+AWTLYGLV SQFGDI D ++G
Sbjct: 1319 AIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTG 1378
Query: 1378 ETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
+TV+Q+L YFGF+HDFLGV+AAV V FTVLF+F+FA IKAFNFQRR
Sbjct: 1379 DTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482654|ref|XP_003632802.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2215 bits (5740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1071/1426 (75%), Positives = 1218/1426 (85%), Gaps = 61/1426 (4%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKV 60
+SRDEDDEEAL WAALEKLPTYNR++KG+L S G A+EVD+H LG E++ L+++LVK+
Sbjct: 32 SSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGFQEKKNLVERLVKI 91
Query: 61 ADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGF 120
A+ DNE+ LLKL+NR+DRVGI LPEIEVRFEHL ++AEA+VG RALP+F N IE
Sbjct: 92 AEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALPSFIYSAFNQIEDI 151
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
LN L ILPSRKKK TIL DV+GI+KP R+TLLLGPP+SGKTTLLLAL+GKLD SLK++G+
Sbjct: 152 LNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGK 211
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQGVG RYDML ELSRREK
Sbjct: 212 VTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREK 271
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
ANIKPDPDIDVFMKA+ATEGQ+ +V+TDY +K+LGL+VCADT+VGD+M+RGISGGQRKR
Sbjct: 272 AANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKR 331
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
VTTGEMLVGP+ ALFMDEISTGLDSSTT+QIV SLRQ IHILNGTA+ISLLQPAPETYDL
Sbjct: 332 VTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDL 391
Query: 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
FDDIIL+S+ QIV+QGPRE VL+FF+SMGF CP+RKGVADFLQEVTS+KDQQQYW RK+E
Sbjct: 392 FDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDE 451
Query: 421 PYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISR 480
PY FVTVKEF++AFQ+FH+G+KLG L TPFDK+KSHPAAL T+ YG+ KKELL ACISR
Sbjct: 452 PYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISR 511
Query: 481 ELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
E LLMKRNSFVYIFKL QL I ISMT+F RT+MH++S +G IY GALFFT++MI FN
Sbjct: 512 EYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFN 571
Query: 541 GMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
GM+EL+M+IAKLPVFYKQR L FYPAWAY LP+WILK+PI FVEVAVWV ++YYVIGFDP
Sbjct: 572 GMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDP 631
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
NVGR FKQYLLLVLVNQM+S LFR +AA GR+M+VANTFGSF++L+LFALGGFVLSRE++
Sbjct: 632 NVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENV 691
Query: 661 KKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQK-VLPNSTEPLGVEVLKSRGFFTDAYWYW 719
KKWW W YW SPLMYAQN + VNEFLG SW K +STE LGV VLKSRGFFT+AYWYW
Sbjct: 692 KKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYW 751
Query: 720 LGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGGTLQLSTCGSSSS 779
+G L G IL+FNF + +AL++LN ++A
Sbjct: 752 IGAGALLGFILVFNFCYTVALTYLNEAIAEA----------------------------- 782
Query: 780 HLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
RRN+ + GMVLPF+PLS+TF+D+ YSVDMP
Sbjct: 783 -------------RRNN------------------KKGMVLPFQPLSITFDDIRYSVDMP 811
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
+EMK QGVL+D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI
Sbjct: 812 EEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIN 871
Query: 900 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
ISGYPKKQETFARISGYCEQNDIHSP+VT++ESLLYSAWLRLP DVDS+TR+MF+EE+ME
Sbjct: 872 ISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVME 931
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
LVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 932 LVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 991
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079
TVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG EIYVGPLGRHSSHLI YF+ I
Sbjct: 992 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFQGIE 1051
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRD 1139
GV+KIKDGYNPATWMLEV+SS+QE LGVDFT+IYK S+LYRRNK LI+ELS+PAPGS+D
Sbjct: 1052 GVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKD 1111
Query: 1140 LYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSK 1199
LYFPTQYSQSFFTQCMACLWKQ SYWRNPPYTAVRF FTT IAL+FG++FWDLGTK K
Sbjct: 1112 LYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKK 1171
Query: 1200 RQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEI 1259
+QDL NAMGSMY AV FLGVQNSSSVQPVVAVER VFYRE+AAGMYS+M YAFAQ L+EI
Sbjct: 1172 QQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEI 1231
Query: 1260 PHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATV 1319
P+VF QAVVYGVIVYAMIGFEWTA KF WY+FFMF++ L FTFYGMM VA TPN HIA +
Sbjct: 1232 PYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAI 1291
Query: 1320 VSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLESGET 1379
V+ AFYG+WN+FSGFI+PRTRIP+WWRWYYWA P+AWTLYGLV SQFGDI D ++G+T
Sbjct: 1292 VAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDT 1351
Query: 1380 VKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
V+Q+L YFGF+HDFLGV+AAV V FTVLF+F+FA IKAFNFQRR
Sbjct: 1352 VEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1425 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.989 | 0.959 | 0.550 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.534 | 0.535 | 0.677 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.542 | 0.532 | 0.565 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.538 | 0.528 | 0.547 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.536 | 0.530 | 0.552 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.536 | 0.538 | 0.537 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.530 | 0.533 | 0.548 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.524 | 0.529 | 0.500 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.527 | 0.518 | 0.507 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.527 | 0.526 | 0.495 | 0.0 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4144 (1463.8 bits), Expect = 0., P = 0.
Identities = 794/1442 (55%), Positives = 1038/1442 (71%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTAST-----G---AANEVDVHKLGLLERQR 52
T DDEEAL WAA+EKLPTY+RL+ ++ A G + EVDV KL +RQ+
Sbjct: 43 TQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDGEDRQK 102
Query: 53 LIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNF 112
ID + KVA+ DNE++L KL+NR+DRVGI LP +EVR+EHL ++A+ Y G R+LPT N
Sbjct: 103 FIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRSLPTLLNV 162
Query: 113 CANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXD 172
N+ E L + I ++K + TILKD++G++KP R+TLLLGPP+S D
Sbjct: 163 VRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLD 222
Query: 173 PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDML 232
SL++SG +TYNG+ +DEFVP++T+AYISQ+D+H+G MTV+ETL FSARCQGVG+RYD+L
Sbjct: 223 KSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLL 282
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
EL+RREKDA I P+ D+D+FMKA A +G + S+VTDY +K+LGLD+C DT+VGD+M+RG
Sbjct: 283 NELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGDDMMRG 342
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
ISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTTFQIV L+QI+H+ T ++SLLQ
Sbjct: 343 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQ 402
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQ 412
PAPET+DLFDDIIL+SEGQIV+QGPR+++LEFF+S GF+CP+RKG ADFLQEVTSKKDQ+
Sbjct: 403 PAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTSKKDQE 462
Query: 413 QYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKE 472
QYWV PY ++ V EF+ +++FHVG K+ + L PFDKS+ H AAL Y ++K+E
Sbjct: 463 QYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYSVSKRE 522
Query: 473 LLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFF 532
LLK+C +E LLM+RN+F Y+FK +Q+ I I+ TLF RT+M+ + + +Y+GAL F
Sbjct: 523 LLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYIGALLF 582
Query: 533 TIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILN 592
+I+ FNG AE++M +++LPVFYKQRDL FYP+W + LPT++L +P + +E W+++
Sbjct: 583 GMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVT 642
Query: 593 YYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGG 652
YY IGF P+ R FKQ+LL+ L+ QM++ LFRL+A+ R+M++ANT G+ +L++F LGG
Sbjct: 643 YYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLVFLLGG 702
Query: 653 FVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLP--NSTEPLGVEVLKSRG 710
F+L + I WW WAYW SPL YA NGL VNE W + NST LG VL +
Sbjct: 703 FLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWD 762
Query: 711 FFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDN-RTGGTL 769
+ WYW+ + L LFN F LAL++LNP G +A + E ++ + D +
Sbjct: 763 VYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQGKDPMRR 822
Query: 770 QLSTC-GSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLT 828
LST G+ + SRD S E A K GMVLPF PL+++
Sbjct: 823 SLSTADGNRRGEVAMGRMSRD------------SAAEASGGAGNKK--GMVLPFTPLAMS 868
Query: 829 FEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888
F+DV Y VDMP EM+ QGV + +L LL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 869 FDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928
Query: 889 KTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSE 948
KTGGYI G+++ISG+PK QETFARISGYCEQ DIHSP VTV ESL++SA+LRLP +V +
Sbjct: 929 KTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKD 988
Query: 949 TRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
+ MF++++MELVEL+ LR S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 989 EKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
Query: 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHS 1068
LDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG IY GPLG++S
Sbjct: 1049 LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNS 1108
Query: 1069 SHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIE 1128
++ YFE+ PGV+KI + YNPATWMLE SS + EL L VDF ++Y S L++RNKAL++
Sbjct: 1109 HKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVK 1168
Query: 1129 ELSKPAPGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGS 1188
ELS P G+ DLYF TQ+SQ+ + Q +CLWKQ W+YWR+P Y VRF+FT A +L+ G+
Sbjct: 1169 ELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGT 1228
Query: 1189 LFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSM 1248
+FW +G S DL +G++Y A+ F+G+ N S+VQP+VAVER VFYRE+AAGMYS+M
Sbjct: 1229 VFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAM 1288
Query: 1249 AYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXXYGMMCV 1308
YA +QV E+P+V +Q V Y +IVYAM+GFEW A KF W++ YGMM V
Sbjct: 1289 PYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTV 1348
Query: 1309 AMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXXANPIAWTLYGLVASQFGD 1368
++TPN +A++ + AFYGI+N+FSGF P+AWT+YGL+ SQ+GD
Sbjct: 1349 SLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGD 1408
Query: 1369 IDDTRLE--SGE---TVKQFLRSYFGFKHDFLGVIXXXXXXXXXXXXXXXXLGIKAFNFQ 1423
++ TR++ G TVKQ++ ++GF+ DF+G + I+ NFQ
Sbjct: 1409 VE-TRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQ 1467
Query: 1424 RR 1425
R
Sbjct: 1468 TR 1469
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2823 (998.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 518/765 (67%), Positives = 637/765 (83%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTAST--GAANEVDVHKLGLLERQRLIDKLV 58
+SR+EDDEEAL WAALEKLPT++RL+KGILTAS G NE+D+ KLG + ++L+++L+
Sbjct: 32 SSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLGFQDTKKLLERLI 91
Query: 59 KVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIE 118
KV D ++E+LL KLK R+DRVGI LP IEVRF+HL VEAE +VGGRALPTF NF +N +
Sbjct: 92 KVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRALPTFVNFISNFAD 151
Query: 119 GFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLS 178
FLN LH++P+RKKKFTIL DV+GIVKP R+ LLLGPP+S D LK +
Sbjct: 152 KFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQELKQT 211
Query: 179 GRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 238
GRVTYNGH M+EFVPQRTAAYI Q+DVHIGEMTVRET A++AR QGVGSRYDML EL+RR
Sbjct: 212 GRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELARR 271
Query: 239 EKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298
EK+ANIKPDPDID+FMKA++T G++ +V+TDY++K+LGL+VCADTMVGD+MLRGISGGQ+
Sbjct: 272 EKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQK 331
Query: 299 KRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358
KRVTTGEMLVGP+ ALFMDEISTGLDSSTT+QIV SLR +HI NGTA+ISLLQPAPET+
Sbjct: 332 KRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETF 391
Query: 359 DLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRK 418
+LFDDIILI+EG+I+++GPR+HV+EFF++MGF+CP RKGVADFLQEVTSKKDQ QYW R+
Sbjct: 392 NLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWARR 451
Query: 419 EEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACI 478
+EPYRF+ V+EF++AFQ+FHVG+++GD L PFDK+KSHPAALTTK YG+ KEL+K
Sbjct: 452 DEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTSF 511
Query: 479 SRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMIT 538
SRE LLMKRNSFVY FK QL + ++MTLFFRT+M + + +G +Y GALFF ++M+
Sbjct: 512 SREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILMMLM 571
Query: 539 FNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGF 598
FNGM+ELSM+IAKLPVFYKQRDL FYPAW Y LP W+LK+PI+F+E A+ + YYVIGF
Sbjct: 572 FNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYVIGF 631
Query: 599 DPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSRE 658
DPNVGR FKQY+LLVL+NQM+S LF+++AA GR+M+VANTFG+FAMLV FALGG VLSR+
Sbjct: 632 DPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRD 691
Query: 659 DIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWY 718
DIKKWW W YW SP+MY QN + NEF G+SW + + NS+E LGV LKSRGF AYWY
Sbjct: 692 DIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWY 751
Query: 719 WLGMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECD 762
W+G L G ++LFNFGF LAL+FLN G QAVI+EE S+E +
Sbjct: 752 WIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETE 796
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2361 (836.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 447/791 (56%), Positives = 588/791 (74%)
Query: 3 RDEDDEEALIWAALEKLPTYNRLKKGIL--TASTG--AANEVDVHKLGLLERQRLIDKLV 58
R+EDD E L WAALE+LPTY+RL+KG+L T G +VDV L E++ L++ ++
Sbjct: 52 REEDDVE-LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMIL 110
Query: 59 KVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIE 118
K + DNE+ L +L+ R DRVGI +P+IEVR+E+L+VE + RALPT FN N IE
Sbjct: 111 KFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIE 170
Query: 119 GFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLS 178
L H+LPS+K+K ILKD++GI+KPSR+TLLLGPP+S D +L++S
Sbjct: 171 SILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMS 230
Query: 179 GRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 238
GR+TY GH EFVPQ+T AYISQHD+H GEMTVRE+L FS RC GVG+RY +L ELSRR
Sbjct: 231 GRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRR 290
Query: 239 EKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298
E++A IKPDP+ID FMK++A GQE S+VTDYV+K+LGLD+CADT+VGD M RGISGGQR
Sbjct: 291 EREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQR 350
Query: 299 KRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358
KR+TTGEMLVGPA ALFMDEISTGLDSSTTFQI +RQ++HI + T VISLLQPAPET+
Sbjct: 351 KRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETF 410
Query: 359 DLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRK 418
+LFDDIIL+SEGQIV+QG R++VLEFF+ MGF+CP+RKG+ADFLQEVTSKKDQ+QYW R+
Sbjct: 411 ELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRR 470
Query: 419 EEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACI 478
E PY +V+V +FS F +FH GQ+L R P+DK+K+HPAAL T+ YGI+ K+L KAC
Sbjct: 471 EHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACF 530
Query: 479 SRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMIT 538
RE LLMKRNSFVY+FK +Q+TI +I+MT++FRT+MH +V +G + GALFF++I +
Sbjct: 531 DREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLM 590
Query: 539 FNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGF 598
FNGMAEL+ ++ +LPVF+KQRD FYP WA+ LP ++LK+P++ +E +W+ L YY IGF
Sbjct: 591 FNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGF 650
Query: 599 DPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSRE 658
P+ R F+Q L VNQM+ LFR + A GR+ V+AN+ G+ A+LV+F LGGF++S++
Sbjct: 651 APSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKD 710
Query: 659 DIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNS-----TEPLGVEVLKSRGFFT 713
DI W W Y+ SP+MY Q L +NEFL W PN+ + +G +LKSRGFFT
Sbjct: 711 DIPSWLTWCYYTSPMMYGQTALVINEFLDERWGS--PNNDTRINAKTVGEVLLKSRGFFT 768
Query: 714 DAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAV-ISEESQSNECDNR--TGGTL 769
+ YW+W+ + L G +LFNF +I+AL +LNP G S+A + EE + + TGG++
Sbjct: 769 EPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSV 828
Query: 770 QLSTCGSSSSH 780
T S+SSH
Sbjct: 829 VELT--STSSH 837
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2318 (821.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 429/784 (54%), Positives = 580/784 (73%)
Query: 3 RDEDDEEALIWAALEKLPTYNRLKKGIL--TASTGAAN--EVDVHKLGLLERQRLIDKLV 58
R+EDD E L WAA+E+LPT++RL+KG+L T++ G ++D+ +L +++ L++ ++
Sbjct: 54 REEDDME-LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMIL 112
Query: 59 KVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIE 118
+ DNE+ L L+ R DRVGI +P+IEVR+E+++VE + RALPT FN N +E
Sbjct: 113 SFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLE 172
Query: 119 GFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLS 178
L H+LPS++KK ILKD++GIVKPSR+TLLLGPP+S D +L++S
Sbjct: 173 SILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMS 232
Query: 179 GRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 238
GR+TY GH EFVPQ+T AYISQHD+H GEMTVRE L FS RC GVGSRY ++ ELSRR
Sbjct: 233 GRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRR 292
Query: 239 EKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298
EK+ IKPDP ID FMK++A GQE S+VTDYV+K+LGLD+CAD + GD M RGISGGQ+
Sbjct: 293 EKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQK 352
Query: 299 KRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358
KR+TTGEMLVGPA ALFMDEISTGLDSSTTFQI +RQ++HI + T +ISLLQPAPET+
Sbjct: 353 KRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETF 412
Query: 359 DLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRK 418
+LFDDIIL+SEGQIV+QGPR++VLEFF+ GF+CP+RKGVADFLQEVTSKKDQ+QYW ++
Sbjct: 413 ELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKR 472
Query: 419 EEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACI 478
E+PY +V+V +FS F FH GQKL R P+DK+K+H AAL T+ YGI+ EL KAC
Sbjct: 473 EQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACF 532
Query: 479 SRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMIT 538
RE LLMKRNSFVY+FK +Q+TI +I+MT++ RT+MH +V +G + GA+FF++I +
Sbjct: 533 DREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVM 592
Query: 539 FNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGF 598
FNG+AEL+ ++ +LPVFYKQRD FYP WA+ LP W+LK+P++ +E +W+ L YY IGF
Sbjct: 593 FNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGF 652
Query: 599 DPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSRE 658
P+ R F+Q L VNQM+ LFR + A GR+ V++N+ G+F +L++F LGGF+++++
Sbjct: 653 APSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKD 712
Query: 659 DIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPN-----STEPLGVEVLKSRGFFT 713
DI+ W WAY+ SP+MY Q + +NEFL W PN + + +G +LKSRGFFT
Sbjct: 713 DIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSS--PNYDTRINAKTVGEVLLKSRGFFT 770
Query: 714 DAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNEC-DNR--TGGTL 769
+ YW+W+ + L G LLFN +ILAL +LNP G S+A + EE + + +NR G +
Sbjct: 771 EPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVV 830
Query: 770 QLST 773
+L++
Sbjct: 831 ELNS 834
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2279 (807.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 429/776 (55%), Positives = 567/776 (73%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTA-------STGAANE-VDVHKLGLLERQR 52
T +DEEAL WA++EKLPTYNRL+ ++ N+ VDV KL ERQ+
Sbjct: 41 TKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKLDGEERQK 100
Query: 53 LIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNF 112
ID + KVA+ DNE++L KL+NR+DRVGI LP +EVR++HL V+A+ Y G R+LP+ N
Sbjct: 101 FIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLPSLLNA 160
Query: 113 CANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXD 172
N+ E L + I ++K + TILKDV+GIVKPSR+TLLLGPP+S D
Sbjct: 161 VRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLD 220
Query: 173 PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDML 232
SL +SG VTYNG+ ++EFVP +T+AYISQ+D+H+G MTV+ETL FSARCQGVG+RYD+L
Sbjct: 221 KSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLL 280
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
EL+RREKDA I P+ D+D+FMKA A +G ++S++TDY +K+LGLD+C DT+VGD+M+RG
Sbjct: 281 NELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRG 340
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
ISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTTFQIV L+QI+H+ T +ISLLQ
Sbjct: 341 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQ 400
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQ 412
PAPET+DLFDDIIL+SEGQIV+QGPR+H+LEFF+S GF+CP+RKG ADFLQEVTSKKDQ+
Sbjct: 401 PAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQE 460
Query: 413 QYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKE 472
QYWV PYR++ V EF+ +F+ FHVG KL + L P+DKSKSH AAL Y I K E
Sbjct: 461 QYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTE 520
Query: 473 LLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFF 532
LLK+C +E +LMKRNSF Y+FK +Q+ I I+ TL+ RT+MH + + IYVG+L F
Sbjct: 521 LLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLF 580
Query: 533 TIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILN 592
+I+ FNG+AE++M+I +LPVFYKQRDL F+P W Y LPT++L +PI+ E W+++
Sbjct: 581 AMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVT 640
Query: 593 YYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGG 652
YY IG+ P+ R FKQ+L++ L+ QM++G+FR +A+T R+M +ANT G +LV+F GG
Sbjct: 641 YYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGG 700
Query: 653 FVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQ-KVLPNSTEPLGVEVLKSRGF 711
F+L R +I WW+WAYW SPL YA N + VNE W K+ NST LG VL
Sbjct: 701 FLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDV 760
Query: 712 FTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTG 766
F D WYW+G+ GL G ++FN F LAL++L+P G +QA++ +E + E + G
Sbjct: 761 FDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEAKGKAG 815
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2246 (795.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 412/767 (53%), Positives = 555/767 (72%)
Query: 3 RDE-DDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKVA 61
+DE +DEE L WAAL++LPTY+R+++GI G E+ + L E++ L+D+LV
Sbjct: 16 KDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEASEQRLLLDRLVNSV 75
Query: 62 DVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFL 121
+ D EQ +++ R D V + P+IEVRF++L VE+ +VG RALPT NF N+ EG L
Sbjct: 76 ENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRALPTIPNFIINMAEGLL 135
Query: 122 NCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRV 181
+H++ ++ K TIL ++G+++PSRLTLLLGPP+S +L+ SG++
Sbjct: 136 RNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNLQTSGKI 195
Query: 182 TYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKD 241
TYNG+++ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG +YDML+EL+RREK
Sbjct: 196 TYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLLELARREKL 255
Query: 242 ANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRV 301
A I PD D+D+FMK+LA G E S+V +YV+K+LGLD CADT+VGDEM++GISGGQ+KR+
Sbjct: 256 AGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGISGGQKKRL 315
Query: 302 TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361
TTGE+LVGPA LFMDEIS GLDSSTT QI+ +R H L GT VISLLQP+PETY+LF
Sbjct: 316 TTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQPSPETYELF 375
Query: 362 DDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEP 421
DD+IL+SEGQI++QGPR+ VL+FF S+GF CP RK VADFLQEVTSKKDQQQYW P
Sbjct: 376 DDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRP 435
Query: 422 YRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRE 481
YR+V +F++AF+++ G+KL L PFDK +H AAL+T YG+ K ELLK + +
Sbjct: 436 YRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSELLKINFAWQ 495
Query: 482 LLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNG 541
LMK+N+F+Y+FK +QL + +I+MT+F RT MH +++ +G IY+G+L+F++++I FNG
Sbjct: 496 KQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNG 555
Query: 542 MAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPN 601
E+ M +AKLPV YK RDL FYP+WAY LP+W+L +P + +E A WV + YY IG+DP
Sbjct: 556 FTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTYYTIGYDPL 615
Query: 602 VGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIK 661
R +Q+LL ++QMS GLFR+M + GR M+VANTFGSFAMLV+ LGGF++SR+ I
Sbjct: 616 FSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGFIISRDSIP 675
Query: 662 KWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNST-EPLGVEVLKSRGFFTDAYWYWL 720
WW W YW SPLMYAQN +VNEFLG++WQK N T + LG+ +LK R F+ YWYW+
Sbjct: 676 SWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLFSGNYWYWI 735
Query: 721 GMAGLAGSILLFNFGFILALSFLNPFGS-QAVISEESQSNECDNRTG 766
G+A L G +LFN F L L+ LNP+G QAV+S E R G
Sbjct: 736 GVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKRKG 782
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2224 (787.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 419/764 (54%), Positives = 557/764 (72%)
Query: 4 DEDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKVADV 63
D+ DEEAL WAALEKLPT+ RL+ I+ VDV KLG+ +RQ+ ID + KV +
Sbjct: 33 DDHDEEALKWAALEKLPTFARLRTTIIHPHEDL---VDVTKLGVDDRQKFIDSIFKVTEE 89
Query: 64 DNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNC 123
DNE+ L K +NR+DRV I LP +EVRFE + +EA ++G RALPT N N+ E L
Sbjct: 90 DNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAERGLRL 149
Query: 124 LHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRVTY 183
L ++ K TIL+DV+GI+KPSR+TLLLGPP+S D SLK++GRVTY
Sbjct: 150 LGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTY 209
Query: 184 NGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
NGH ++EFVPQ+T+AYISQ+DVH+G MTV+ETL FSARCQGVG+RYD+L EL RREKDA
Sbjct: 210 NGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRREKDAG 269
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
I P+P++D+FMK++A ++S++TDY +++LGLD+C DT+VGDEM+RGISGGQ+KRVTT
Sbjct: 270 ILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTT 329
Query: 304 GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363
GEM+VGP LFMDEISTGLDSSTT+QIV L++I+ + T ++SLLQPAPET++LFDD
Sbjct: 330 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDD 389
Query: 364 IILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYR 423
IIL+SEGQIV+QGPR+HVL FF++ GF+CP RKG ADFLQEVTS+KDQ+QYW ++PY
Sbjct: 390 IILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYS 449
Query: 424 FVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELL 483
+++V EFS F+ FHVG L L P+D+ KSHPA+L K + + K +L K C RELL
Sbjct: 450 YISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELL 509
Query: 484 LMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGMA 543
LMKRN+F YI K +Q+ I +I+ T++ RT+M + ++G +Y+GAL F++I+ FNG A
Sbjct: 510 LMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFA 569
Query: 544 ELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVG 603
EL++ I +LPVFYKQRDL F+P W + LPT++L +PI+ E VWV + YY+IGF P +
Sbjct: 570 ELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGFAPELS 629
Query: 604 RAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKW 663
R K L++ L QM+ G+FR +AAT RSM++ANT G+ +L+LF LGGF++ R +I KW
Sbjct: 630 RFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKW 689
Query: 664 WKWAYWCSPLMYAQNGLAVNEFLGNSW--QKVLPNSTEPLGVEVLKSRGFFTDAYWYWLG 721
WKWAYW SP+ Y + L VNE L W Q NST LG+ VL+ FTD WYW+G
Sbjct: 690 WKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTS-LGLAVLEIFDIFTDPNWYWIG 748
Query: 722 MAGLAGSILLFNFGFILALSFLNPFGSQ-AVISEES-QSNECDN 763
+ G+ G +LFN LAL+FLNP Q AV+S+E+ + N +N
Sbjct: 749 VGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAEN 792
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1985 (703.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 382/763 (50%), Positives = 530/763 (69%)
Query: 5 EDDEEALIWAALEKLPTYNRLKKGILTASTGAANE-----VDVHKLGLLERQRLIDKLVK 59
++ E AL WA +++LPT+ RL+ ++ G E VDV KLG +ER +I+KL+K
Sbjct: 19 DEAEHALQWAEIQRLPTFKRLRSSLVD-KYGEGTEKGKKVVDVTKLGAMERHLMIEKLIK 77
Query: 60 VADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEA-YVGGRALPTFFNFCANLIE 118
+ DN +LL K++ R++RVG+ P IEVR+EHL VEA V G+ALPT +N +L
Sbjct: 78 HIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWN---SLKH 134
Query: 119 GFLNCLHI--LPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLK 176
FL+ L + + + + IL DV+GI+ P RLTLLLGPP + +LK
Sbjct: 135 VFLDLLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLK 194
Query: 177 LSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELS 236
G ++YNGH ++E VPQ+T+AYISQHD+HI EMT RET+ FSARCQGVGSR D+++E+S
Sbjct: 195 CYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVS 254
Query: 237 RREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296
+REKD I PDP+ID +MKA++ +G + S+ TDY++K+LGLD+CA+T+VG+ M RGISGG
Sbjct: 255 KREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGG 314
Query: 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356
Q+KR+TT EM+VGP ALFMDEI+ GLDSST FQI+ SL+Q+ HI N T +SLLQPAPE
Sbjct: 315 QKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPE 374
Query: 357 TYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWV 416
+YDLFDDI+L++EG+IV+ GPR+ VL+FF+ GF+CP+RKGVADFLQEV SKKDQ QYW+
Sbjct: 375 SYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWL 434
Query: 417 RKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKA 476
+ P+ FV+V S F+ +G+K+ + L P+D SK+H AL+ Y + K EL +A
Sbjct: 435 HQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRA 494
Query: 477 CISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIM 536
CISRE LLMKRN FVY+FK QL + +I+MT+F RT+M D + +G Y+ LFF ++
Sbjct: 495 CISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDID-IIHGNSYMSCLFFATVV 553
Query: 537 ITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVI 596
+ +G+ ELSM++ +L VFYKQ+ L FYPAWAY +P +LK+P++F E VW L YYVI
Sbjct: 554 LLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVI 613
Query: 597 GFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLS 656
G+ P R F+Q+++L V+ S +FR +AA ++ V A T GSF ML+ F GF +
Sbjct: 614 GYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIP 673
Query: 657 REDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAY 716
D+ W KW +W +P+ YA+ GL+VNEFL WQK+ P + LG +L+SRG D Y
Sbjct: 674 YTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVT-LGRTILESRGLNYDDY 732
Query: 717 WYWLGMAGLAGSILLFNFGFILALSFL-NPFGSQAVISEESQS 758
YW+ ++ L G ++FN F LALSFL +P S+ +IS++ S
Sbjct: 733 MYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLS 775
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1981 (702.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 387/762 (50%), Positives = 525/762 (68%)
Query: 4 DEDDEEALIWAALEKLPTYNRLKKGILTASTGAANE-----VDVHKLGLLERQRLIDKLV 58
D D E AL WA +E+LPT R++ +L + E VDV KLG +ER +I+KL+
Sbjct: 52 DHDAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEKLI 111
Query: 59 KVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEA-YVGGRALPTFFNFCANLI 117
K + DN +LL K++ R+DRVG+ LP IEVR+E L V AE V G+ALPT +N ++
Sbjct: 112 KHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVL 171
Query: 118 EGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKL 177
+ L + + K I+ DVNGI+KP RLTLLLGPP+ + +LK
Sbjct: 172 SELVK-LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKC 230
Query: 178 SGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 237
SG ++YNGH +DEFVPQ+T+AYISQ+D+HI EMTVRET+ FSARCQGVGSR D+++E+S+
Sbjct: 231 SGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSK 290
Query: 238 REKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297
REK+ I PD ++D +MKA++ EG + S+ TDY++K+LGLD+CA+ ++GD M RGISGGQ
Sbjct: 291 REKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQ 350
Query: 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPET 357
+KR+TT EM+VGP ALFMDEI+ GLDSST FQIV SL+Q HI + T ++SLLQPAPE+
Sbjct: 351 KKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPES 410
Query: 358 YDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVR 417
YDLFDDI+L+++G+IV+ GPR VL FF+ GF CP+RKGVADFLQEV SKKDQ QYW
Sbjct: 411 YDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWH 470
Query: 418 KEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKAC 477
++ PY FV+V+ S F+ +G+K+ D L P+D+SKSH AL+ Y + EL AC
Sbjct: 471 EDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIAC 530
Query: 478 ISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMI 537
ISRE LLMKRN FVYIFK QL + I+MT+F RT+M D + +G Y+ ALFF +I++
Sbjct: 531 ISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGID-IIHGNSYMSALFFALIIL 589
Query: 538 TFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIG 597
+G ELSM+ +L VFYKQ+ L FYPAWAY +P +LKVP++F E VW L+YYVIG
Sbjct: 590 LVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIG 649
Query: 598 FDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSR 657
+ P R FKQ++LL V+ S +FR +AA +++V + T GSF +L F GFV+
Sbjct: 650 YTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPP 709
Query: 658 EDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYW 717
+ W KW +W +PL Y + GL+VNEFL W ++ PN+ LG +L++RG + Y
Sbjct: 710 PSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNFT-LGRTILQTRGMDYNGYM 768
Query: 718 YWLGMAGLAGSILLFNFGFILALSFL-NPFGSQAVISEESQS 758
YW+ + L G +LFN F LAL+FL +P S+A+IS++ S
Sbjct: 769 YWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLS 810
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1967 (697.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/765 (49%), Positives = 522/765 (68%)
Query: 5 EDDEEALIWAALEKLP-----TYNRL--KKGILTASTGAAN-----EVDVHKLGLLERQR 52
E DEE L WAA+ +LP T+N + + T ++G A+ +DV KL +R+
Sbjct: 32 EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREM 91
Query: 53 LIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNF 112
L+ + + +D DN +LL +K R+DRVG+ +P+IEVRFE+LN+EA+ G RALPT N
Sbjct: 92 LVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNV 151
Query: 113 CANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXD 172
+ E L+ L I+ RK K ILKD++GI+KP R+TLLLGPP S D
Sbjct: 152 SRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLD 211
Query: 173 PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRY-DM 231
SLK +G +TYNG N+++F +RT+AYISQ D HI E+TVRETL F+ARCQG +
Sbjct: 212 KSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGY 271
Query: 232 LVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291
+ +L+R EK+ I+P +ID FMKA + +G++ SV TDYV+KVLGLDVC+DTMVG++M+R
Sbjct: 272 MKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMR 331
Query: 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL 351
G+SGGQRKRVTTGEM VGP LFMDEISTGLDSSTTFQIV +R +H+++ T +++LL
Sbjct: 332 GVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALL 391
Query: 352 QPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQ 411
QPAPET+DLFDD+IL+SEG +V+QGPRE V+ FF+S+GF P RKGVADFLQEVTSKKDQ
Sbjct: 392 QPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQ 451
Query: 412 QQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKK 471
QYW +PY+F+ V + + AF+ G L PFDK + P+AL + I+
Sbjct: 452 AQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGW 511
Query: 472 ELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALF 531
E LK C RELLL+KR+ F+Y F+ Q+ G+++ T+F +T++H S G Y+ LF
Sbjct: 512 ENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLF 571
Query: 532 FTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVIL 591
F ++ + FNG +EL + I++LPVFYKQRD F+PAW++ + +W+L+VP + +E VW +
Sbjct: 572 FGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGV 631
Query: 592 NYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALG 651
Y+ +G P+ GR F+ LLL V+QM+ GLFR+MA+ R MV+ANTFGS A+L++F LG
Sbjct: 632 VYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLG 691
Query: 652 GFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGF 711
GFV+ + DIK WW W +W SPL Y Q +AVNEF W S +G+ +LK R F
Sbjct: 692 GFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSF 751
Query: 712 FTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEE 755
T+ YWYW+G+A L G +LFN LAL++LNP ++AV+ ++
Sbjct: 752 PTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD 796
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5977 | 0.9768 | 0.9527 | N/A | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.7135 | 0.9747 | 0.9761 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6963 | 0.9845 | 0.9736 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7265 | 0.9775 | 0.9714 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7187 | 0.9761 | 0.9686 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6982 | 0.9901 | 0.9684 | N/A | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.7033 | 0.9852 | 0.9722 | yes | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3094 | 0.8021 | 0.8606 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5307 | 0.9733 | 0.9585 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1425 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-100 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-100 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-73 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-54 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-54 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-52 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-48 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-43 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-42 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-30 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-28 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-18 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-18 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-13 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-13 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-13 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-12 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-12 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-12 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-11 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-11 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-09 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-09 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-09 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-08 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-07 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-07 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-07 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-06 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-06 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-05 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 6e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-04 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-04 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-04 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 9e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.001 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.001 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.001 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 0.001 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.001 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.001 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.001 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.001 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.001 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.001 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 0.002 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.002 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.002 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.002 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.002 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.003 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.003 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.003 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.003 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 0.004 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.004 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 0.004 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.004 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2083 bits (5399), Expect = 0.0
Identities = 876/1440 (60%), Positives = 1104/1440 (76%), Gaps = 21/1440 (1%)
Query: 1 TSRDEDDEEALIWAALEKLPTYNRLKKGILTA--------STGAANEVDVHKLGLLERQR 52
TS ++DEEAL WAA+EKLPTY+RL+ I+ + + EVDV KL +RQ+
Sbjct: 37 TSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQK 96
Query: 53 LIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNF 112
ID + KVA+ DNE+ L K +NR+DRVGI LP +EVRFEHL VEA+ Y+G RALPT N
Sbjct: 97 FIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNA 156
Query: 113 CANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD 172
N+ E L L I ++K K TILKD +GI+KPSR+TLLLGPP+SGKTTLLLALAGKLD
Sbjct: 157 ARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD 216
Query: 173 PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDML 232
PSLK+SG +TYNG+ ++EFVP++T+AYISQ+DVH+G MTV+ETL FSARCQGVG+RYD+L
Sbjct: 217 PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLL 276
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
EL+RREKDA I P+ ++D+FMKA A EG ++S++TDY +K+LGLD+C DT+VGDEM+RG
Sbjct: 277 SELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
ISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTT+QIV L+QI+H+ T ++SLLQ
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ 396
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQ 412
PAPET+DLFDDIIL+SEGQIV+QGPR+H+LEFF+S GF+CP+RKG ADFLQEVTSKKDQ+
Sbjct: 397 PAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE 456
Query: 413 QYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKE 472
QYW + +PYR+++V EF++ F++FHVG +L + L PFDKS+SH AAL Y + K E
Sbjct: 457 QYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKME 516
Query: 473 LLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFF 532
LLKAC +E LLMKRN+FVY+FK +Q+ I I+ T+F RT+MH + +G +Y+GAL F
Sbjct: 517 LLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLF 576
Query: 533 TIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILN 592
++I+ FNG AEL++ I +LPVFYKQRDL F+P W + LPT++L +PI+ +E VWV++
Sbjct: 577 SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636
Query: 593 YYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGG 652
YY IGF P R FKQ LL+ L+ QM++G+FRL+A+ R+M++ANT G+ +L++F LGG
Sbjct: 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGG 696
Query: 653 FVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSW-QKVLPNSTEPLGVEVLKSRGF 711
F+L + +I WW+WAYW SPL Y N LAVNE W K+ +++ LG VL
Sbjct: 697 FILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDV 756
Query: 712 FTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTGGTLQ 770
FTD WYW+G+ L G +LFN F LAL++LNP G QA+ISEE+
Sbjct: 757 FTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS 816
Query: 771 LSTC-GSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTF 829
LS+ G+++ + S +N S SL + A PKR GMVLPF PL+++F
Sbjct: 817 LSSADGNNTREVAIQRMSNPEGLSKNRDS---SLEAANGVA--PKR-GMVLPFTPLAMSF 870
Query: 830 EDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 889
+DV Y VDMP EMK QGV +D+L LL V+GAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 871 DDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 930
Query: 890 TGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET 949
TGGYI G+I+ISG+PKKQETFARISGYCEQNDIHSP VTV ESL+YSA+LRLP +V E
Sbjct: 931 TGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEE 990
Query: 950 RRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+ MF++E+MELVEL+ L+ ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 991 KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050
Query: 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSS 1069
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG IY GPLGR+S
Sbjct: 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSH 1110
Query: 1070 HLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEE 1129
+I YFEAIPGV KIK+ YNPATWMLEVSS + E+ LG+DF + YK S LY+RNKAL++E
Sbjct: 1111 KIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKE 1170
Query: 1130 LSKPAPGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSL 1189
LS P PG+ DLYF TQYSQS + Q +CLWKQ W+YWR+P Y VRF FT A ALM G++
Sbjct: 1171 LSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTI 1230
Query: 1190 FWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMA 1249
FW +GTK S DL +G+MY AV F+G+ N S+VQP+VAVER VFYRE+AAGMYS++
Sbjct: 1231 FWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALP 1290
Query: 1250 YAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVA 1309
YA AQV+ EIP+V +Q Y +IVYAM+ FEWTA KF W+ F F+SFL FT+YGMM V+
Sbjct: 1291 YAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVS 1350
Query: 1310 MTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDI 1369
+TPN +A + + AFYG++N+FSGF IPR +IP WW WYYW P+AWT+YGL+ SQ+GD+
Sbjct: 1351 LTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDV 1410
Query: 1370 DDT----RLESGETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425
+DT T+K +++ ++G+ DF+G +AAV V FTV F F+FA I+ NFQ R
Sbjct: 1411 EDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1171 bits (3032), Expect = 0.0
Identities = 404/1462 (27%), Positives = 655/1462 (44%), Gaps = 176/1462 (12%)
Query: 64 DNEQLLLKLKNRVDRVGISLPE--IEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFL 121
+ + + + +D I + V +++L+ A PTF N ++
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGF 62
Query: 122 NCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLK-LSGR 180
L K F ILK ++G++KP LT++LG P SG +TLL +A D + G
Sbjct: 63 RKL-KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 181 VTYNGHNMDEFVPQRTA--AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 238
+TY+G +E Y ++ DVH +TV ETL F+ARC+ +R D +
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 239 EKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298
+ + D + GL +T VG++ +RG+SGG+R
Sbjct: 182 KH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215
Query: 299 KRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358
KRV+ E +G A D + GLDS+T + + +L+ +IL+ T ++++ Q + + Y
Sbjct: 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275
Query: 359 DLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRK 418
+LFD +I++ EG ++ GP + ++F+ MGF+CP R+ ADFL +TS ++Q
Sbjct: 276 ELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGY 334
Query: 419 EEP-YRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKS--------------KSHP-AALT 462
E+ R T +EF ++ +L + D+
Sbjct: 335 EKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP 392
Query: 463 TKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTN 522
+ Y ++ +K C++R L MK N +F + I +I ++F+ +
Sbjct: 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSD--- 449
Query: 523 GGIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAF 582
GALFF I+ F+ + E++ P+ K R Y A + + I ++P
Sbjct: 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKI 509
Query: 583 VEVAVWVILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSF 642
+E V+ I+ Y+++ F GR F L+L + S LFR + A +++ A T +
Sbjct: 510 IESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569
Query: 643 AMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSW--QKVLPNS--T 698
+L L GF + R + W KW Y+ +PL YA L VNEF G + + +P+
Sbjct: 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629
Query: 699 EPLGVE-------VLKSRGFFTD-------AY-----WYWLGMAGLAGSILLFNFGFILA 739
+ LGV + + D ++ W + G + F F +IL
Sbjct: 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689
Query: 740 LSFLNPFGSQAVISEESQSNECDNRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQ 799
F + I + + ++ TS
Sbjct: 690 TEFNKGAKQKGEILVFRRGSLKR----------------------------AKKAGETSA 721
Query: 800 SLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKL-----------QGVL 848
S DI A G VL L+ +DV DM +E +
Sbjct: 722 SNKN---DIEA------GEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK 772
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE 908
+K V+LN V G +PG LTALMG SGAGKTTL++VLA R T G ITG ++
Sbjct: 773 KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
+F R GY +Q D+H P TV ESL +SA+LR P V + ++EE+++L+E+
Sbjct: 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD 892
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
++VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D
Sbjct: 893 AVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDG 1087
G+ ++CTIHQPS +FE FD L L+++GG +Y G LG +S +I+YFE G K +
Sbjct: 952 GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPED 1010
Query: 1088 YNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRDLYFPT--- 1144
NPA WMLEV ++ D+ ++++ S Y+ K ++ L + D P
Sbjct: 1011 ANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALS 1070
Query: 1145 QYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLF 1204
+Y+ S + Q LW+ YWR P Y +F T AL G F+ +GT Q L
Sbjct: 1071 KYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QGLQ 1127
Query: 1205 NAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFV 1264
N M +++ A + P VA RE+ + +S +A+ AQ+ +EIP+ V
Sbjct: 1128 NQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLV 1187
Query: 1265 QAVVYGVIVYAMIGFEWTAVK-------FIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIA 1317
++ I Y +GF W A K + + FL F+ G M ++ PN A
Sbjct: 1188 AGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNA 1247
Query: 1318 TVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDT----- 1372
V++ + + F G + P +R+P +W + Y +P + + L+++ D+ T
Sbjct: 1248 AVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKE 1307
Query: 1373 ----RLESGETVKQFLRSY---------------------FGFKHDFLGVIAAVHV---- 1403
SG+T ++++ Y + + +DFL I++ +
Sbjct: 1308 LLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWR 1367
Query: 1404 AFTVLFVFVFALGIKAFNFQRR 1425
F + F+F I F
Sbjct: 1368 NFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-100
Identities = 178/593 (30%), Positives = 289/593 (48%), Gaps = 46/593 (7%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNIKISGYPKKQETFAR 912
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
IS Y +Q+D+ P +TV E L++ A LR+P V + +R ++E+++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 973 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1032 VCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGYNPA 1091
+CTIHQPS ++FE FD++ LM G Y+G + +F + G + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS----PDQAVPFFSDL-GHP-CPENYNPA 272
Query: 1092 TWMLEVSS-------SSQELALGVDFTDIYKGSELYRRNKALIEELSKPAPGSRDLYFPT 1144
+ ++V + S+E + D + S++ R S A G L +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGKAGG---LVKDS 327
Query: 1145 Q------YSQSFFTQCMACLWKQHW-SYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKT 1197
+ Y+ S++TQ L K+ W S R+P VR + T A++ G ++ G
Sbjct: 328 ENMEGIGYNASWWTQ-FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ 386
Query: 1198 SKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLI 1257
Q N G+++ + + QN V V E VF RE +G+Y AY A+ +
Sbjct: 387 KGVQ---NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA 443
Query: 1258 EIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIA 1317
E+P + ++ I Y MIG A F+ ++F + + T +G + + +A
Sbjct: 444 ELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMA 503
Query: 1318 TVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLY---GLVASQFGDIDDTRL 1374
V F + +F GF I IP++++W + ++W Y GL+ +Q+ D+D+
Sbjct: 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIEC 560
Query: 1375 ESGETVKQFLRSY------FGFKHDFLGVIAAVHVAFTVLF--VFVFALGIKA 1419
S T S F++ L + V F + FAL I+
Sbjct: 561 TSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRI 613
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 316 bits (813), Expect = e-100
Identities = 113/239 (47%), Positives = 143/239 (59%), Gaps = 47/239 (19%)
Query: 824 PLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 883
LT++++ Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 884 VLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSPN+TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 1e-73
Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 45/239 (18%)
Query: 824 PLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 883
++L+F ++ +V LL VSG +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 884 VLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
LAGR+TG ++G + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062
EPTSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ +G IY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV-IYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 4e-73
Identities = 162/630 (25%), Positives = 278/630 (44%), Gaps = 73/630 (11%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
+ + +LK+V+G+ KP L ++G +GKTTL+ ALA + +K SG V NG +D
Sbjct: 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93
Query: 190 EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
+ +AY+ Q D+ I +TVRE L F A + + RR
Sbjct: 94 AKEMRAISAYVQQDDLFIPTLTVREHLMFQAH-----------LRMPRR----------- 131
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE-MLRGISGGQRKRVTTG-EML 307
+ + + V D V++ LGL CA+T +G ++G+SGG+RKR+ E+L
Sbjct: 132 -------VTKKEKRERV--DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL 182
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNG--TAVISLLQPAPETYDLFDDII 365
P L LF DE ++GLDS + +V L+ + T + ++ QP+ E ++LFD II
Sbjct: 183 TDPPL-LFCDEPTSGLDSFMAYSVVQVLK---GLAQKGKTIICTIHQPSSELFELFDKII 238
Query: 366 LISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFV 425
L++EG++ + G + + FF +G CP+ ADF +V + P
Sbjct: 239 LMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLA-----------VIPGSEN 287
Query: 426 TVKE-FSDAFQAFHVGQKLGDGLRTPFDKSKSHPAA-LTTKSYGINKKELLKACISRELL 483
+E +F V D L S A L S + + ++
Sbjct: 288 ESRERIEKICDSFAVSDIGRDMLVNTN--LWSGKAGGLVKDSENMEGIGYNASWWTQFYA 345
Query: 484 LMKRNSFVYIFK--------LIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTII 535
L+KR S++ + + LIQ +T ++ ++ + + V N GALF +
Sbjct: 346 LLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLT 401
Query: 536 MITF-NGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYY 594
+TF N +++ A+LPVF ++ Y AY L I ++P+ + A++ + Y+
Sbjct: 402 NMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYW 461
Query: 595 VIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFV 654
+IG L+ LV +++ L++ S +A T G ++ GGF
Sbjct: 462 MIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFF 521
Query: 655 LSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPNSTE----PLGVEVLKSRG 710
++ + I ++KW + S Y GL +N++ + +T G +L++
Sbjct: 522 INSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLS 581
Query: 711 FFTDAYWYWLGMAGLAGSILLFNFGFILAL 740
F +L + GL I F AL
Sbjct: 582 FRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 3e-54
Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 7/216 (3%)
Query: 1152 TQCMACLWKQHWSYWRNPPYT-AVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSM 1210
TQ A L ++ WR+P R + +AL+FG++F +L T N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS----LGGLNRPGLL 56
Query: 1211 YTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYG 1270
+ ++ F + + + PV ER V RE A+ +YS AY A++L+E+P +QA+++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1271 VIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNV 1330
+IVY M+G + +F ++ + + L + G+ A+ P+ A+ + +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1331 FSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQF 1366
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 9e-54
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 6/215 (2%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNIKISGYPKKQ 907
+ +LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ F + Y Q+DI P +TV E+L Y+A LRLP R+ E + L +L R
Sbjct: 77 DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVEDVLLRDLALTR 135
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+
Sbjct: 136 ---IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062
R V+ TIHQP D+F FD + L+ G +Y G
Sbjct: 193 NRIVILTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 7e-52
Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 61/261 (23%)
Query: 117 IEGFLNCLHILPSRKK-KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL 175
+ + + K ILKD +G+VKP + L+LG P SG +TLL ALA +
Sbjct: 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR----- 56
Query: 176 KLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVEL 235
G V+ G D+H + +E F+ + G E+
Sbjct: 57 -TEGNVSVEG------------------DIHYNGIPYKE---FAEKYPG---------EI 85
Query: 236 SRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295
++ DV L T + D+ ++ G+E +RGISG
Sbjct: 86 IYVSEE---------DVHFPTL-TVRE----TLDFALR----------CKGNEFVRGISG 121
Query: 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355
G+RKRV+ E LV A L D + GLDSST +I+ +R + +L T +SL Q +
Sbjct: 122 GERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD 181
Query: 356 ETYDLFDDIILISEGQIVFQG 376
E YDLFD ++++ EG+ ++ G
Sbjct: 182 EIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 1e-48
Identities = 135/505 (26%), Positives = 250/505 (49%), Gaps = 63/505 (12%)
Query: 824 PLSLTFEDVVYSVDMPQEMKLQGVLDDKLV-----------------LLNGVSGAFRPGV 866
P++L F DV Y V + MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPN 926
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P+
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 927 VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986
+TV E+L++ + LRLP + + + + E ++ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1046
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1047 DELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELAL 1106
D + ++ G ++ G S ++YFE++ G++P+ M + +LA
Sbjct: 275 DSVLVLSEGRC-LFFGKG----SDAMAYFESV--------GFSPSFPM-NPADFLLDLAN 320
Query: 1107 GVDFTDIYKGSELYRRNKALIEEL-SKPAPGSRDLYFPTQYSQ----------------- 1148
GV TD E ++L+ + AP + + + Q
Sbjct: 321 GVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSS 380
Query: 1149 ------SFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQD 1202
++F Q + L ++ ++ + +R A AL+ G ++W S +D
Sbjct: 381 DRISISTWFNQ-FSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWH-----SDFRD 434
Query: 1203 LFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHV 1262
+ + +G ++ F GV S + V ERA+F +E+A+GMY+ +Y A+++ ++P
Sbjct: 435 VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPME 494
Query: 1263 FVQAVVYGVIVYAMIGFEWTAVKFI 1287
+ ++ + Y M G + F+
Sbjct: 495 LILPTIFLTVTYWMAGLKPELGAFL 519
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-44
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 472 ELLKACISRELLLMKRNSFV-YIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGAL 530
LKA + RE L R+ + +++LIQ + ++ T+F D+ G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 531 FFTIIMITFNGMAELSMS-IAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWV 589
FF+I+ F+ + +S I + V ++ Y AY L ++++PI+ ++ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 590 ILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFA 649
++ Y+++G + R F L+L+L +SGL +AA S A+ G +L L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 650 LGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEF 685
L GF + + + W +W Y+ +PL YA L NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 1e-43
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 13/218 (5%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP--KK 906
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKE 72
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
R GY Q P +TV E+L + A L ++E R EE++EL L
Sbjct: 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERI---EELLELFGLEDK 129
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 130 ANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064
G + + E D + ++ G I G
Sbjct: 185 EGGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 4e-42
Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 38/242 (15%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
IL DV+ V+ ++ +LG SGKTTLL A++G+++ SG++ +NG Q+
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMK 255
AY+ Q D+ + +TVRETL ++A + L R+ DA K
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILR-----------LPRKSSDAIRKK--------- 121
Query: 256 ALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG-EMLVGPALAL 314
++ + L A T +G +++GISGG+R+RV+ ++L P + L
Sbjct: 122 ---------------RVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-L 165
Query: 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374
+DE ++GLDS T +V++L Q+ N ++++ QP + + LFD I+L+S G+IV+
Sbjct: 166 ILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
Query: 375 QG 376
G
Sbjct: 225 SG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-40
Identities = 144/537 (26%), Positives = 246/537 (45%), Gaps = 70/537 (13%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
TIL V G+ P + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
RT +++Q D+ +TVRETL F + L+ L +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK----------------- 171
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG-EMLVGPALA 313
+ QE +V + VI LGL C +T++G+ +RGISGG+RKRV+ EML+ P+L
Sbjct: 172 ---SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 314 LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373
L +DE ++GLD++ +++V +L + T V S+ QP+ Y +FD ++++SEG+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 374 FQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEP---------YRF 424
F G + +F+S+GF ADFL ++ + Q +E+P Y
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNT 346
Query: 425 VTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTK-SYGINKKELLKACISRELL 483
+ + A + H Q + + +K H ++ S N+ +L + R L
Sbjct: 347 LLAPKVKAAIEMSHFPQANARFVGSA--STKEHRSSDRISISTWFNQFSIL---LQRSLK 401
Query: 484 LMKRNSF--VYIFKLIQLTI-TGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFN 540
K SF + +F++I + G++ FR R +G LFF I F
Sbjct: 402 ERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDR---------LGLLFFISI---FW 449
Query: 541 GMAELSMSIAKLP----VFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVI 596
G+ S+ P +F K+R Y +Y + + +P+ + +++ + Y++
Sbjct: 450 GVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMA 509
Query: 597 GFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGF 653
G P +G L+L+ +S GL + A A+T + ML GGF
Sbjct: 510 GLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-37
Identities = 78/291 (26%), Positives = 135/291 (46%), Gaps = 51/291 (17%)
Query: 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE 190
T L V+ V+P + LLGP +GKTTLL LAG L P+ SG + G+++ +
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVK 71
Query: 191 FVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ R Y+ Q E+TVRE L F AR G LS+ E + I
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG----------LSKEEAEERI---- 117
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+ ++++ GL+ A+ V R +SGG ++R++ L+
Sbjct: 118 --------------------EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALL 152
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVIS--LLQPAPETYDLFDDIIL 366
L +DE ++GLD + +I LR++ T ++S +L+ E +L D +I+
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVII 209
Query: 367 ISEGQIVFQGPREHVLEFFKSMGFEC--PKRKGVADFLQEVTSKKDQQQYW 415
+++G+I+ +G E + E F G P+R +A+ L+ + K +++
Sbjct: 210 LNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNIKISGYPKKQ 907
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K+
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYKE 76
Query: 908 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
E + Y + D+H P +TV E+L ++ +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------- 111
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 ------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 1026 D-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062
D T +++Q S +I++ FD++ ++ G +IY G
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 20/206 (9%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFA- 911
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 912 -RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
+ GYC Q D +TV E L + A L+ P + +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1031 VVCTIHQPSIDIFEAF-DELFLMKRG 1055
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 9e-30
Identities = 70/208 (33%), Positives = 106/208 (50%), Gaps = 15/208 (7%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP--KKQ 907
K L+GVS PG+ L+G +GAGKTTLM +LA G I+I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ R GY Q PN TV E L Y AWL+ + S+ + ++E++ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-29
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGR 180
L K +LK+V+G KP LT ++GP +GK+TLL ALAG+ L +SG
Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG-LGVSGE 67
Query: 181 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 225
V NG +D+ ++ Y+ Q D+ +TVRETL F+A+ +G+
Sbjct: 68 VLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 34/235 (14%)
Query: 829 FEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888
+++ +S D L+ +S + G ++G +G+GK+TL+ +L G
Sbjct: 2 LKNLSFSYP-----------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50
Query: 889 KTGGYITGNIKISGYPKKQET---FARISGYCEQNDIHSP-----NVTVYESLLYSAWLR 940
G +G + + G + + R G QN P TV E + +
Sbjct: 51 L--GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENL 104
Query: 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1000
P+ + E R +EE +ELV L LR LS Q++R+ IA L +P I+
Sbjct: 105 GLPEEEIEER---VEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDIL 156
Query: 1001 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+DEPT+GLD ++ ++ G+T++ H + E D + +++ G
Sbjct: 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-26
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 690 WQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-S 748
W K S E LG VLKSRG FT+AYWYW+G+ L G +LFN F LAL++LNP G S
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 749 QAVIS 753
QA++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 27/217 (12%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQET 909
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 910 FARISGYCEQNDIHSPNVTVYESLL-----YSAWLRLPPDVDSETRRMFLEEIMELVELN 964
A+ Y Q+ +TVYE +L + P D E +EE +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLE 129
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1023
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 130 HLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGY 1057
+ G TVV +H D+ A D L L+K G
Sbjct: 185 NREKGLTVVMVLH----DLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L VS +PG A++G +GAGK+TL+ + G + T +G+I++ G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 913 ISGYCEQNDIHSPN--VTVYESLLYSAW--LRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
I GY Q + ++V + +L + L + + ++E +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELAD 127
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRG 1055
T++ H + + E FD + L+ R
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 3e-23
Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 53/205 (25%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYP--KKQETF 910
L+ +S G + L+G +GAGKTTL+ ++ G + G IK+ G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R GY + N+TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1031 VVCTIHQPSIDIFEAFDELFLMKRG 1055
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 32/221 (14%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPK 905
+K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
Query: 906 KQETFAR---ISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMEL 960
K+ R I G+ Q+ + P++T E++ LP + ++ E EL
Sbjct: 74 KELAAFRRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEEL 124
Query: 961 VELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+E VGL S LS Q++R+ IA L +P II DEPT LD+
Sbjct: 125 LER-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 1016 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
VM +R + G T+V H P ++ E D + ++ G
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 19/209 (9%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L +S + G +TAL+G +GAGK+TL+ + G +G IKI G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 914 SGYCEQNDIHSPN--VTVYE---SLLYSA--WLRLPPDVDSETRRMFLEEIMELVELNPL 966
GY Q + +TV + Y W R D E ++E +E V + L
Sbjct: 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGMEDL 132
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
R +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G+TV+ H + + FD + + R
Sbjct: 188 EGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 4e-22
Identities = 36/87 (41%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Query: 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVIS 349
LRG+SGG+RKRV+ LV LF+DE ++GLDSS+ Q+++ LR++ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 350 LLQPAPETYDLFDDIILISEGQIVFQG 376
+ QP+ E ++LFD ++L+S+G++++ G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 5e-22
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKK 906
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1027 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 28/211 (13%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFA 911
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 912 RISGYCEQN-DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR--- 967
+ GY Q+ D +V E LL L+ + + E +++ ++L L+
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQA-----ETVLKDLDLYALKERH 123
Query: 968 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
SL S Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSL---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057
G+ V+ H + + D + L+ G
Sbjct: 175 QGKAVIVITHDYEF-LAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 53/208 (25%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
LN VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R G Q+ P++TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1030
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 1031 VVCTIHQPSIDIFEAF---DELFLMKRG 1055
VV H D+ EA D + +++ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKK 906
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
+ R G Q+ P++TV E++ + LR P + R + E++ELV L L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1025
LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1026 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
+ G T + H D EA D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 53/224 (23%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
+K + D++ V + LLG +GKTT L L G+L P+ SG NG+++
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 190 EFVPQRTAA-----YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
R AA Y Q D E+TVRE L F AR +G L + E +
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG----------LPKSEIKEEV 114
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
+ +++VLGL A+ +SGG +++++
Sbjct: 115 ------------------------ELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348
L+G L +DE ++GLD ++ I + ++ G ++I
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSII 186
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 74/265 (27%), Positives = 114/265 (43%), Gaps = 64/265 (24%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191
IL D++ + +T +LGP SGK+TLL LAG L P SG V +G ++
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASL 69
Query: 192 VPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
P+ + AY+ Q +TV E LV L R P
Sbjct: 70 SPKELAKKLAYVPQSPSAPFGLTVYE-----------------LVLLGR-------YP-- 103
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+ +E + + +++LGL+ AD V + +SGG+R+RV L+
Sbjct: 104 ----HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LI 149
Query: 309 GPALA-----LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF-- 361
ALA L +DE ++ LD + +++ LR + T V+ L +DL
Sbjct: 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-------HDLNLA 202
Query: 362 ----DDIILISEGQIVFQGPREHVL 382
D +IL+ +G+IV QG E VL
Sbjct: 203 ARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 4e-20
Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 35/262 (13%)
Query: 802 SLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGA 861
+L E +A V P+ ++ E++ + D L+ ++
Sbjct: 296 TLLESPVATPGSGEKAEVANEPPIEISLENLSFRYP------------DGKPALSDLNLT 343
Query: 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK---KQETFARISGYCE 918
+ G LTAL+G SGAGK+TL+++L G G I+++G E + + +
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWRKQISWVS 401
Query: 919 QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGV-- 976
QN + T+ E++L L P D E + ++ L GL V
Sbjct: 402 QNP-YLFAGTIRENIL----LARPDASDEE-----IIAALDQAGLLEFVPKPDGLDTVIG 451
Query: 977 ---SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
+GLS Q +RL +A L++ S++ +DEPT+ LDA I+++ ++ +TV+
Sbjct: 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLV 510
Query: 1034 TIHQPSIDIFEAFDELFLMKRG 1055
H+ D +A D + ++ G
Sbjct: 511 ITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 7e-20
Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 29/235 (12%)
Query: 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886
+ E++ + + L VS G L+G +G+GK+TL+ +L
Sbjct: 4 IEAENLSFR------------YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN 51
Query: 887 GRKTGGYITGNIKISGYPKKQET----FARISGYCEQN-DIHSPNVTVYESLLYSAWLRL 941
G +G + + G E + G QN D TV + + + L
Sbjct: 52 G--LLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENL 108
Query: 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001
+ R + E +ELV L L LS Q++R+ IA L P I+
Sbjct: 109 GLPREEIEER--VAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILL 161
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+DEPT+GLD + ++ ++ + G+T++ H + E D + ++ G
Sbjct: 162 LDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDG 215
|
Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 8e-20
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 19/222 (8%)
Query: 843 KLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIK 899
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 900 ISGYPKKQ--ETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLE 955
++ +K+ + + G+ QN + P++TV E++ + + R+ E
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 956 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
E++E++ L S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1016 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 2e-19
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L G++ A G + AL+G +GAGK+TL+ L G R G + + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 913 IS-GYCEQN---DIHSPNVTVYESLLYSAW-LRLPPDVDSETRRMFLEEIMELVELNPLR 967
G Q+ + + V + + + L L E R + E + V + LR
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA---EVERR-VREALTAVGASGLR 121
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1028 GRTVVCTIH 1036
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 3e-19
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 32/199 (16%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQ- 907
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 908 ------ETFARISGYCEQNDIHSPNVTVYESLL--------YSAWLRLPPDVDSETRRMF 953
TF + P +TV E+++ L + E R
Sbjct: 73 ARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER- 123
Query: 954 LEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178
Query: 1014 AAIVMRTVRNTVDTGRTVV 1032
+ +R + G TV+
Sbjct: 179 TEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 5e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1036 HQPSIDIFEAFDELFLMKRG 1055
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 6e-19
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 27/210 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNIKISGYPKKQE---T 909
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I ++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLR-LPPDVDSETRRMFLEEIMELVELNPLRQ 968
AR+ +Q + +++V ++L Y A L L R I EL+ R
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLS-------RAEARARIAELLA----RL 120
Query: 969 SLVGLPG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1025
L V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR
Sbjct: 121 GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALAR 180
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
D G +V+ H +D EA D L ++ RG
Sbjct: 181 DQGLSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 8e-19
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKISGYPKKQE 908
+L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
R G Q+ ++TV+E++ + LR E R+ EEI E+V +
Sbjct: 74 RLRRRMGMLFQSGALFDSLTVFENVAF--PLR-------EHTRLSEEEIREIVLE---KL 121
Query: 969 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R+
Sbjct: 122 EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181
Query: 1024 TVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G T + H F D + ++ G
Sbjct: 182 LKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 9e-19
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 33/205 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGN-IKISGYPKKQETFA 911
L VS + PG AL+G SGAGK+TL+ L G T G + + I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 912 RI-SGYCEQNDIHSPNVTVYESLL---------YSAWLRLPPDVDSETRRMFLEEIMELV 961
R G Q ++V E++L + + L P + + LE
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALER----- 131
Query: 962 ELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 132 ---------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1017 VMRTVRN-TVDTGRTVVCTIHQPSI 1040
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-18
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 59/274 (21%)
Query: 801 LSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSG 860
L E LP + FE+V + DD VL +S
Sbjct: 450 LDTPPEQEGDKTLI----HLPKLQGEIEFENVSFRYGP----------DDPPVL-EDLSL 494
Query: 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNIKISGYPKKQ---ETFARISG 915
PG A++G SG+GK+TL+ +L G Y G I + G + R G
Sbjct: 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVG 550
Query: 916 YCEQNDIHSPNVTVYESLLYSAWLR-----LPPDVDSETRRMFLEEIMELVELNPLRQSL 970
Y Q+ L+S +R P+ EEI+E +L + +
Sbjct: 551 YVLQDP-----------FLFSGSIRENIALGNPEAT-------DEEIIEAAQLAGAHEFI 592
Query: 971 VGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
LP G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ GRTV+ H+ S + D + ++ +G
Sbjct: 653 L-QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 27/190 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
I E + PN+T E+L A L + I E++++ VG
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRK----------KRIDEVLDV-------VG 115
Query: 973 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
L V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D
Sbjct: 116 LKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 1028 GRTVVCTIHQ 1037
G TV+ + H
Sbjct: 176 GITVLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-18
Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
P + K +L +++G VKP LT L+G +GKTTLL LAG+ + ++G + NG
Sbjct: 14 PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRP 72
Query: 188 MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG----SRYDMLVELSRR 238
+D+ QR+ Y+ Q DVH +TVRE L FSA +G+ R + VEL+ +
Sbjct: 73 LDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAK 126
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 62/247 (25%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ- 194
L D++ +K L++GP SGK+TLL L G L P+ SG V +G ++ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 195 --RTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
R + Q+ D TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV-GP 310
+E + ++++GL+ D L SGGQ++RV +L P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLRDRSP--FTL---SGGQKQRVAIAGVLAMDP 153
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI------SLLQPAPETYDLFDDI 364
+ L +DE + GLD + +++ L+++ G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKKLKA--EGKTIIIVTHDLDLL------LELADRV 204
Query: 365 ILISEGQ 371
I++ +G+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 4e-18
Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 30/198 (15%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYP--K 905
++GV+ R G + +G +GAGKTT + +L R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR----VAGYDVVR 59
Query: 906 KQETFARISGYCEQNDIHSPNVTVYESL-------LYSAWLRLPPDVDSETRRMFLEEIM 958
+ R G Q +V E L + LP D EE++
Sbjct: 60 EPRKVRRSIGIVPQY------ASVDEDLTGRENLEMMGRLYGLPKDE----AEERAEELL 109
Query: 959 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
EL EL VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 110 ELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164
Query: 1019 RTVRNTVDTGRTVVCTIH 1036
+R + G T++ T H
Sbjct: 165 DYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQ- 907
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 908 ------ETFARISGYCEQNDIHSPNVTVYESLL--------YSAWLRLPPDVDSETRRMF 953
TF Q P +TV E++ S L P E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 954 L-EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1013 AAAIVMRTVRNTVDT-GRTVV 1032
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 7e-18
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETF 910
++GVS +PG +T L+G +GAGKTT + +LAG G+ T + G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPA 74
Query: 911 A--RISGYCEQNDIHSPNVTVYESLLYSAWLR-LPPDVDSETRRMFLEEIMELVELNPLR 967
R G+ + +T E+L Y A L L D T R LEE+ + + + L
Sbjct: 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD--ELTAR--LEELADRLGMEELL 130
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R
Sbjct: 131 DRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185
Query: 1028 GRTVVCTIH 1036
G+ ++ + H
Sbjct: 186 GKCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 9e-18
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--------GNIKISGYPKKQETFARI 913
+T + G SGAGK+TL+ +AG + GG I KI+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
G Q P++ V E+L + L + E R+ ++E+++L+ L+ L
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR---- 127
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1032
+ LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 1033 CTIHQPSIDIFEAF---DELFLMKRG 1055
H S EA D + +M+ G
Sbjct: 187 FVTHDLS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 12/190 (6%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-IKISGYPKKQETFA 911
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 912 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R G Q+ P+ VYE++ ++ L V R + + +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LE----VTGVPPREIRKRVPAALELVGLSHKH 130
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1031 VVCTIHQPSI 1040
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 2e-17
Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 65/232 (28%)
Query: 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886
+ F++V +S +L VS +PG A++G SG+GK+TL+ +L
Sbjct: 1 IEFKNVSFSYP-----------GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 887 G--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
T G I + + E+ + Y Q + L+S +R
Sbjct: 50 RLYDPTSGEILIDGVDLRDLD--LESLRKNIAYVPQ-----------DPFLFSGTIR--- 93
Query: 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003
E I LS QR+R+ IA L+ +P I+ +D
Sbjct: 94 -----------ENI---------------------LSGGQRQRIAIARALLRDPPILILD 121
Query: 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
E TS LD A+++ +R + G+TV+ H+ S D + ++ G
Sbjct: 122 EATSALDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYP--KKQETF 910
+ GVS R G + L+G +GAGKTT + +L + T G T ++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT----VAGHDVVREPREV 71
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R G Q+ +T +E+L A L V RR ++E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1029
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1030 TVVCTIHQPSIDIFEA---FDELFLMKRG 1055
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNIKISGYPKKQET 909
L ++ PG A++G SGAGK+TL+ + + G I +I K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
RI G Q+ +TV E++L L P S R E+ L+ L +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVL-HGRLGYKPTWRSLLGRFSEEDKER--ALSALER- 132
Query: 970 LVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1023
VGL LS Q++R+ IA L P +I DEP + LD + + VM ++
Sbjct: 133 -VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRI 191
Query: 1024 TVDTGRTVVCTIHQ 1037
+ G TV+ +HQ
Sbjct: 192 NKEDGITVIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-17
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKK 906
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
R G Q+ P++TV E++ + L++ + + +EE +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1025
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1026 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GYEIYVGPLGRHSSHLI 1072
+ G T V H D EA D + +M G EIY P R + I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 8e-17
Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 45/244 (18%)
Query: 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 885
+ F +V +S + ++ L+ VS R G A++G G+GK+TL+ +L
Sbjct: 2 RIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL 50
Query: 886 AGRKTGGYI--TGNIKISGYPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYSAWLR 940
AG Y +G++ + G +Q A + GY Q D+ T+ +++ A
Sbjct: 51 AGL----YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA--- 102
Query: 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP---------GVSGLSTEQRKRLTIAV 991
P D E I+ EL + + P GLS QR+ + +A
Sbjct: 103 --PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153
Query: 992 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D + +
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIV 210
Query: 1052 MKRG 1055
M G
Sbjct: 211 MDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-17
Identities = 63/199 (31%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPK 905
+L+GVS PG A++G SG+GK+TL+ LAG G + +S
Sbjct: 345 PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD- 403
Query: 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
Q+ R C Q D H + TV E+L + PD E L +E V L
Sbjct: 404 -QDEVRRRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLAD 452
Query: 966 LRQSLV-GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
++L GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 453 WLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLE 512
Query: 1020 TVRNTVDTGRTVVCTIHQP 1038
+ +GRTVV H
Sbjct: 513 DLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 9e-17
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQETFA 911
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 912 RIS-GYCEQNDIHSPNVTVYESLL------YSAWLRLPPDVDSETRRMFLEEIMELVELN 964
R G Q P ++V E++L S W L E + L+ L +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERVG 136
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1022
L ++ S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 137 ILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 1023 NTVDTGRTVVCTIHQPSIDI-FEAFDELFLMKRG 1055
N D G TV+ +HQ +D+ + D + +K G
Sbjct: 194 NQED-GITVIVNLHQ--VDLAKKYADRIIGLKAG 224
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 72/273 (26%), Positives = 113/273 (41%), Gaps = 52/273 (19%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
F L DVN V L LLGP SGK+TLL +AG P SGR+ NG +
Sbjct: 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHA 69
Query: 194 Q-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+ R ++ QH +TVR+ +AF +E+ + K
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK---------- 106
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
+KA E +++++ L +GD +SGGQR+RV L
Sbjct: 107 -IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQ 150
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
L +DE LD+ ++ + LR++ ++ T V + E ++ D I+++S G+I
Sbjct: 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKI 209
Query: 373 VFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405
G + V ++ P V FL EV
Sbjct: 210 EQIGSPDEV--------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETF 910
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 911 ARISGYCEQNDIHSPNVTVYESLLY------SAWLRLPPDVDSETRRMFLEEIMELVELN 964
AR EQ+ + +TV + + S W P + R + EL+
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTELS 128
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
L +S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 129 HLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1025 VDTGRTVVCTIH 1036
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 49/254 (19%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+L+D++ V+ +T L+GP +GK+TLL A+ G L PS SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 195 RTAAYISQHDVHIGE--MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
Y+ Q +TV++ + G + L++++K+
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEK---------- 119
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
+AL +G++ D +G+ +SGGQ++RV L
Sbjct: 120 VDEALER---------------VGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL---LQPAPETYDLFDDIILISE 369
L +DE TG+D + +I L+++ G V+ + L FD +I +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVM---AYFDRVICL-N 213
Query: 370 GQIVFQGPREHVLE 383
++ GP E VL
Sbjct: 214 RHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 10/207 (4%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N ++ R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
G+ Q+ P++TV +++ + +R ++E R +EE++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-VEELLRLVQLEGLADR--- 133
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1031
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 1032 VCTIHQPSIDIFEAFDELFLMKRGGYE 1058
V H + E D + ++ +G E
Sbjct: 192 VFVTHDQE-EALELADRVVVLNQGRIE 217
|
Length = 345 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYP-KKQETFAR-- 912
VS G +T L+G +GAGKTTL+ ++A G +T I G + +F R
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT----IDGVDTVRDPSFVRRK 76
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
I + +++ +T E+L Y A L + + R + E+ + ++L VG
Sbjct: 77 IGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG 132
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+
Sbjct: 133 -----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVI 187
Query: 1033 CTIH 1036
+ H
Sbjct: 188 FSSH 191
|
Length = 245 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-16
Identities = 68/271 (25%), Positives = 110/271 (40%), Gaps = 36/271 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R QN P++TVYE++ + L+L +E + +E+ +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKRV-KEVAKLLGLEHLLNRKP 131
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1029
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1030 TVVCTIHQPSIDIFEA---FDELFLMKRGG-------YEIYVGPLGRHSSHLISYFEAIP 1079
T + H D EA D + +M G E+Y P ++ F P
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF----VAGFIGSP 237
Query: 1080 GVNKIKDGYNPATWMLEVSSSSQELALGVDF 1110
+N +K L + + V
Sbjct: 238 PMNFLKAEVKADGNGLSIPEDKKVALEQVIL 268
|
Length = 338 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 38/183 (20%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPKKQETFA 911
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 912 RIS-----GYCEQNDIHSPNV---TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
+ G Q PN ++Y+++ Y L + L+E +E
Sbjct: 76 VLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHG------IKLKEELDERVE---- 121
Query: 964 NPLRQSL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
++L L GLS Q++RL +A L P ++ +DEPTS LD +
Sbjct: 122 ----EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177
Query: 1015 AIV 1017
A +
Sbjct: 178 AKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 69/256 (26%), Positives = 101/256 (39%), Gaps = 60/256 (23%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
++DV+ + +T LLG +GKTTLL +A L P SG+VT +G + R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 197 AAYISQH-DVHIGE------MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
+++ + V GE +T RE L + AR L LSR+E A I
Sbjct: 70 PSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI----- 114
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
+ K L L D VG S G +++V LV
Sbjct: 115 -------------------AELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVH 150
Query: 310 PALALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISLLQPAPETYDLFDDIILI 367
L +DE ++GLD T I L G AVI E L D +I++
Sbjct: 151 DPSILVLDEPTSGLDIRTR----RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL 206
Query: 368 SEGQIVFQGPREHVLE 383
+G++V +G E +
Sbjct: 207 HKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 9e-16
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L VS PG AL+G SGAGK+TL+++L G T G I + ++ +++
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD--ADSWR 395
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL- 970
+ Q+ T+ E++ + PD + E +E L+ +L
Sbjct: 396 DQIAWVPQHP-FLFAGTIAENIRLAR-----PDASDAE----IREALERAGLDEFVAALP 445
Query: 971 VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
GL G +GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +R +
Sbjct: 446 QGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA-L 504
Query: 1026 DTGRTVVCTIHQPSI 1040
GRTV+ H+ ++
Sbjct: 505 AQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE 908
DKLV+ +G+S + G L+G +GAGKTT + +L G G+I + G P
Sbjct: 18 GDKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSR 74
Query: 909 T-FARIS-GYCEQNDIHSPNVTVYESLL-YSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
AR G Q D P+ TV E+LL + + L + R + ++E +L
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARALVPPLLEFAKLEN 130
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 131 KADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185
Query: 1026 DTGRTVVCTIH 1036
G+T++ T H
Sbjct: 186 ARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNIKISGYPKKQETF 910
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLR-LPPDVDSETRRMFLEEIMELVELNPLRQS 969
RI GY + P + V + L+Y A L+ L E RR ++E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKK---EEARRR-IDEWLERLELSEYANK 124
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1030 TVVCTIHQPSIDIFEAF-DELFLMKRG 1055
TV+ + HQ +++ E D + L+ +G
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 71/276 (25%), Positives = 115/276 (41%), Gaps = 60/276 (21%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191
F +LKDVN ++ +LLGP GK+TLL +AG +P+ SG + +G ++ +
Sbjct: 14 GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDL 70
Query: 192 VPQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI 250
P+ R A + Q+ MTV E +AF + +GV + E D +K
Sbjct: 71 PPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV----------PKAEIDKRVKE---- 116
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML----RGISGGQRKRVTTGEM 306
V K+LGL + +L +SGGQR+RV
Sbjct: 117 --------------------VAKLLGL---------EHLLNRKPLQLSGGQRQRVALARA 147
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366
LV +DE + LD+ + + + + +H GT I + E L D I++
Sbjct: 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVV 206
Query: 367 ISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
+++G+I G + +E P VA F+
Sbjct: 207 MNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKISGYPKKQE 908
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 909 TFARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PL 966
F R GY QN N TV E+L L+ E R +E +E V LN L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLG--LKYKKLSKKEKREK-KKEALEKVGLNLKL 128
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+Q + LS +++R+ +A ++ P +I DEPT LD + V+ + D
Sbjct: 129 KQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND 182
Query: 1027 TGRTVVCTIHQPSI 1040
G+T++ H P +
Sbjct: 183 EGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETF 910
VL +G+S G L G +G+GKTTL+ ++AG G I + P E
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
+ +N + P +TV E+L + A + + +E V L PL
Sbjct: 76 HYLG---HRNAMK-PALTVAENLEFWAAFL-------GGEELDIAAALEAVGLAPL---- 120
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1031 VVCTIHQPSIDIFEA 1045
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 912 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R+ GY Q +TV E++L A L + + R LEE++E + LR+S
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENIL--AVLEIRGL-SKKEREEKLEELLEEFHITHLRKSK 130
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 131 A-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 1031 VVCTIH 1036
V+ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 3e-15
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETF 910
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRR--MFLEEIMELVELNPLRQ 968
AR QN + TV E + R+P E + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLAG 130
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 131 RD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1055
G V+ +H +++ + D + L+ +G
Sbjct: 186 QLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 8e-15
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNIKISGYPKKQETF 910
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 911 ARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
+ Q+ + S P +T+ E + + E R+ + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 56/259 (21%), Positives = 105/259 (40%), Gaps = 50/259 (19%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-- 193
LKDV+ ++ LL+GP SGK+TLL L G L P+ SG V +G +
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75
Query: 194 --QRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI 250
++ + Q+ D + TV + +AF G+ R E + +
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------PREEIEERVA----- 120
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV-G 309
++++GL+ D + SGGQ++RV +L G
Sbjct: 121 -------------------EALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMG 156
Query: 310 PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369
P + L +DE + GLD +++ L+++ G +I + + D ++++ +
Sbjct: 157 PEI-LLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLDD 214
Query: 370 GQIVFQGPREHVLEFFKSM 388
G+I+ G + + +
Sbjct: 215 GKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 25/197 (12%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGNIKISGYPKKQ 907
V+L+GV G + A++G SG+GK+TL+ ++ G R G I +I +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
E R+ G Q ++TV+E++ + LR E ++ I ELV +
Sbjct: 82 EIRKRM-GVLFQQGALFSSLTVFENVAFP--LR-------EHTKLPESLIRELVLMK--- 128
Query: 968 QSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +
Sbjct: 129 LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 1022 RNTVDT-GRTVVCTIHQ 1037
R D G TV+ H
Sbjct: 189 RELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-14
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 14/202 (6%)
Query: 823 EPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 882
EPL L+ ++ S L ++ ++ VS R G L+G SG+GK+TL
Sbjct: 278 EPL-LSVRNL--SKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA 334
Query: 883 DVLAG--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQNDIHS--PNVTVYESLLYSA 937
+LAG + G I + + R Q+ S P +TV + L
Sbjct: 335 RILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP- 393
Query: 938 WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 997
LR+ RR + E++ELV L P + L P LS QR+R+ IA L P
Sbjct: 394 -LRIHGGGSGAERRARVAELLELVGLPP--EFLDRYPH--ELSGGQRQRVAIARALALEP 448
Query: 998 SIIFMDEPTSGLDARAAAIVMR 1019
++ +DEP S LD A V+
Sbjct: 449 KLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPKKQETFARIS 914
VS G + L+G +GAGKTT ++ G R G I + IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974
GY Q ++VY++L+ A L++ D+ +E R E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1035 IH--QPSIDIFE 1044
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
+ L + +S G + G +GAGKTTL+ +LAG R G + + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
E++ + Y +T E+L + W R ++ T + E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1028 GRTVVCTIHQP 1038
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP-KKQE 908
DK V+ NG+S G L+G +GAGK+T+ ++ G + G I + G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 909 TFARIS-GYCEQNDIHSPNVTVYESLL-YSAWLRLPPDVDSETRRMFLEEIM-ELVELNP 965
AR G Q D TV E+LL + + + TR +E ++ L+E
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFAR 161
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
L +S VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ +
Sbjct: 162 L-ESKADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 1026 DTGRTVVCTIH 1036
G+T++ T H
Sbjct: 220 ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
GY Q D P +TV +++ L L +E R E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 973 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1026
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFE 1076
TG+TV+ H DI EA +FL R + V L +++ E
Sbjct: 181 TGKTVLLVTH----DIDEA---VFLADR----VVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 65/273 (23%), Positives = 99/273 (36%), Gaps = 79/273 (28%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
T+LK V+ V+ + ++GP SGK+TLL + G L P SG V +G ++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 195 ------RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
R + Q +TV E +AF L E +R +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAF------------PLREHTRL-------SEE 111
Query: 249 DID--VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
+I V K ++ +GL D + +SGG +KRV
Sbjct: 112 EIREIVLEK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRV----- 145
Query: 307 LVGPALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHILN---GTAVISLLQPA 354
ALA L DE + GLD + I +I L G I +
Sbjct: 146 ----ALARALALDPELLLYDEPTAGLDPIASGVID----DLIRSLKKELGLTSIMVTHDL 197
Query: 355 PETYDLFDDIILISEGQIVFQGPREHVLEFFKS 387
+ + D I ++ +G+IV +G E E S
Sbjct: 198 DTAFAIADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 68/278 (24%), Positives = 109/278 (39%), Gaps = 55/278 (19%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD--E 190
F L D++ +K L LLGP +GK+TLL +AG P +GR+ NG +
Sbjct: 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVS 70
Query: 191 FVPQRTAA--YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ R ++ QH MTV + +AF + + + E R + +
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL---- 121
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML- 307
L + + D +SGGQR+RV L
Sbjct: 122 ----------------------------LRLVQLEGLADRYPAQLSGGQRQRVALARALA 153
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367
V P + L +DE LD+ ++ LR++ L T V E +L D ++++
Sbjct: 154 VEPKV-LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVL 211
Query: 368 SEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405
++G+I GP + V + P + VA FL EV
Sbjct: 212 NQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 3e-14
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQETFA 911
L GVS G + AL+G +GAGKTTL+ + G G I + + I+G P
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHE 71
Query: 912 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLR 967
R GY + P +TV E+LL A+ R + LE + EL L R
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKERR 126
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R D
Sbjct: 127 KQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 1028 GRTVV 1032
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 22/190 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNIKISGYPKKQETF 910
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 911 ARISGYCEQNDIHSPNVTVYESL-LYSAWLRLPPDVDSETRRMFLEEIMELVEL--NPLR 967
RI Q ++ V +S L +A LPP + R L E+++L EL P+R
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA-RFKKRLDELSELLDLEELLDTPVR 152
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1026
Q LS QR R IA L+ P I+F+DEPT GLD A + ++ +
Sbjct: 153 Q----------LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202
Query: 1027 TGRTVVCTIH 1036
G TV+ T H
Sbjct: 203 RGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-14
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL----IDGKP------VA 73
Query: 913 ISGYCEQND-----IH-----SPNVTVYESLLYSAWLRLPPD-VDSETRRMFLE--EIME 959
S + +H PN++V E++ +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 960 LVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L G++ + G +TA++G +GAGK+TL L G + + G I + K Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 913 IS-GYCEQNDIHSP-NVTVYESLLYSAW-LRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
S G Q+ + + +VY+ + + A L+LP D E R+ ++ ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED---EVRKR-VDNALKRTGIEHLKDK 137
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1028
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1029 RTVVCTIHQPSIDIFEAF-DELFLMKRG 1055
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 6e-14
Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 42/239 (17%)
Query: 829 FEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888
FE+V +S D+K +L ++ + +PG A++G +GAGKTTL+++L
Sbjct: 5 FENVNFS------------YDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL--- 49
Query: 889 KTGGYI--TGNIKISGYPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
Y G I I G + + + G Q D + T+ E++ R
Sbjct: 50 -MRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG---RPNA 104
Query: 944 DVDSETRRMFLEEIMELVELNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVAN 996
+ E + + L +G LS +R+ L IA ++ +
Sbjct: 105 TDEEV------IEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRD 157
Query: 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
P I+ +DE TS +D ++ + + GRT + H+ S I A D++ ++ G
Sbjct: 158 PKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 9e-14
Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 55/255 (21%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP--- 193
L +V+ ++P ++G SGK+TLL L G P+ G V +G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
+R Y+ Q D + T+R+ +A A P D +
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGA-------------------------PYADDEEI 571
Query: 254 MKALATEGQEASVVTDYV-IKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG-PA 311
++A G VT++V GLD +G E R +SGGQR+ V L+ P
Sbjct: 572 LRAAELAG-----VTEFVRRHPDGLD----MQIG-ERGRSLSGGQRQAVALARALLRDPP 621
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIH---ILNGTAVISLLQPAPETYDLFDDIILIS 368
+ L +DE ++ +D+ + + L++ + ++ T SLL DL D II++
Sbjct: 622 I-LLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMD 673
Query: 369 EGQIVFQGPREHVLE 383
G+IV GP++ VLE
Sbjct: 674 NGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 46/243 (18%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
L D++ V+P LLGP GKTTLL +AG P SG + +G ++
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVP 68
Query: 193 P-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
P +R + Q +TV E +AF + +GV E+ R ++
Sbjct: 69 PERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL--------- 114
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV-GP 310
++++GL+ + +SGGQ++RV L P
Sbjct: 115 --------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALAREP 149
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370
+L L +DE + LD+ ++ L+++ L T + E L D I +++EG
Sbjct: 150 SL-LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEG 207
Query: 371 QIV 373
+IV
Sbjct: 208 RIV 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 46/235 (19%)
Query: 146 PSRLTLLLGPPASGKTTLLLALAGKLDPS---LKLSGRVTYNGH-NMDEFVPQRTAAYIS 201
+T + G +GK+TLL +AG P + L+G V ++ ++ QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 202 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEG 261
Q + VRE LAF + RE + E
Sbjct: 82 QQYALFPHLNVRENLAFGLK------------RKRNRE--------------DRISVDE- 114
Query: 262 QEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEIST 321
++ +LGLD + +SGG+++RV L L +DE +
Sbjct: 115 ---------LLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 322 GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376
LD + Q++ L+QI LN VI + E L D I+++ +G++ + G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 57/207 (27%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ---E 908
+L VS + PG A++G SG+GK+TL ++ G R T G +++ G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
GY Q+D +F I E +
Sbjct: 73 ELGDHVGYLPQDDE-----------------------------LFSGSIAENI------- 96
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRG 1055
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKISGYPKKQETF 910
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 911 ARISGYCEQNDIHS--PNVTVYESLLY------SAWLRLPPDVDSETRRMFLEEIMELVE 962
AR G + + N+TV E+L S + L + +E RR ++E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 963 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + + P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
GY Q D P +TV +++ L ++ +++ E EL+EL
Sbjct: 74 ------IGYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL---- 117
Query: 968 QSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1023 NTV-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
+T +TV+ H D+ EA D + ++
Sbjct: 175 RLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 53/247 (21%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ-- 194
L +V+ ++ ++G SGK+TLL LAG P+ SG V +G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 195 -RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
R Y+ Q DV + T+R+ + A P D +
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA-------------------------PLADDERI 110
Query: 254 MKALATEGQEASVVTDYVIK-VLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
++A E + VTD+V K GLD +G E RG+SGGQR+ V L+
Sbjct: 111 LRAA-----ELAGVTDFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIH---ILNGTAVISLLQPAPETYDLFDDIILISE 369
L +DE ++ +D ++ ++ LRQ++ ++ T SLL DL D II++
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-------DLVDRIIVMDS 213
Query: 370 GQIVFQG 376
G+IV G
Sbjct: 214 GRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 27/167 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLRQSL 970
G Q+ PN+TV +++ Y + R M E+ E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 971 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPP---DVDSETRRMFLEEIMELVELNPLRQ 968
R G+ Q+ ++TV++++ + LR+ P R + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD 131
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1027
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 132 R---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058
T V H + E D + +M +G E
Sbjct: 187 HVTTVFVTHDQE-EALEVADRVVVMNKGRIE 216
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 42/281 (14%)
Query: 842 MKLQGV---LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 898
++++GV DK + + +S PG + L+G +GAGKTT ++ G G I
Sbjct: 3 LEIEGVTKSFGDKKAV-DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEI 59
Query: 899 KISGYPKKQETFARISGYC-EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI 957
+G P QE RI GY E+ ++ P +TV + L Y A L+ P + + + L+
Sbjct: 60 TWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAW 114
Query: 958 MELVELNPLRQSLVGLPG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+E R +VG + LS ++++ ++ P ++ +DEP SGLD
Sbjct: 115 LE-------RLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL-------GR-- 1066
++ + + G T++ + H+ + E D L ++K+G +Y G + G+
Sbjct: 168 LLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKR 225
Query: 1067 ---HSSHLISYFEAIPGVNKI---KDGYNPATWMLEVSSSS 1101
S + IPG+ KI KDG +W +++ + +
Sbjct: 226 LVIESDLSLEELANIPGILKITETKDG----SWRIQIENET 262
|
Length = 300 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 4e-13
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 71/265 (26%)
Query: 125 HILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184
+K LK V+ ++ ++GP SGK+TLL L G P+ SG V +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVD 64
Query: 185 GHNMDEFVPQRTAAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYDMLVE 234
G ++ + + AA+ + HIG ++T E + GV +
Sbjct: 65 GTDISKLSEKELAAFRRR---HIGFVFQSFNLLPDLTALENVELPLLLAGVPKK------ 115
Query: 235 LSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294
RRE+ A E +++ +GL + E+ S
Sbjct: 116 -ERRER-----------------AEE----------LLERVGLGDRLNHYPS-EL----S 142
Query: 295 GGQRKRVTTGEMLVG-PALALFMDEISTG-LDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
GGQ++RV L P + + DE TG LDS T +++ LR++ T V+
Sbjct: 143 GGQQQRVAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRELNKEAGTTIVVV--- 197
Query: 353 PAPETYD-----LFDDIILISEGQI 372
T+D D II + +G+I
Sbjct: 198 ----THDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 45/254 (17%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+L V+ ++P + +LGP +GK+TLL AL+G+L P SG VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
A H + +LAF Q V V++ R + +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML------V 308
+ALA DY R +SGG+++RV +L V
Sbjct: 118 QALAATDLSGLAGRDY--------------------RTLSGGEQQRVQLARVLAQLWPPV 157
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368
LF+DE ++ LD + + RQ+ G AV+++L D I+L+
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 369 EGQIVFQGPREHVL 382
+G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 60/250 (24%), Positives = 102/250 (40%), Gaps = 57/250 (22%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE---- 190
+L+DV+ VKP ++GP +GK+TLL A+ G L P+ SG + G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKR 69
Query: 191 --FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+VPQR + D I +VR+ + G+ + LS+ +K
Sbjct: 70 IGYVPQRRSI---DRDFPI---SVRDVVLM-----GLYGHKGLFRRLSKADKAK------ 112
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
D ++ +GL + + D + +SGGQ++RV LV
Sbjct: 113 -------------------VDEALERVGL-----SELADRQIGELSGGQQQRVLLARALV 148
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL--LQPAPETYDLFDDIIL 366
L +DE G+D T I LR+ + T ++ L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 367 ISEGQIVFQG 376
+ +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
+ +L G+S G + G +G GKTTL+ +LAG R G + N +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ R Y P ++ E+L + W + +E+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1028 GRTVVCTIHQP 1038
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-13
Identities = 74/284 (26%), Positives = 117/284 (41%), Gaps = 77/284 (27%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
FT + D++ +K LLGP GKTTLL +AG PS SG + +G ++ + V
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-V 72
Query: 193 P--QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
P +R + Q H MTV E +AF + + ++ K A I
Sbjct: 73 PPEKRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI 113
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
KA E ++++GL+ AD +SGGQ++RV
Sbjct: 114 ----------KARVEE----------ALELVGLEGFADRKPHQ-----LSGGQQQRVALA 148
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD----- 359
LV L +DE + LD+ Q+ L+++ L T V T+D
Sbjct: 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-------THDQEEAL 201
Query: 360 -LFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
+ D I ++++G+I G E + +E P + VADF+
Sbjct: 202 AMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 864 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKISGYPKKQ-ETFARISGYC 917
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 918 EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977
Q P+++V +L Y RR+ E ++EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-13
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ--- 907
K L G+S + + G A++G SG+GK+TL ++ G +G++++ G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
ETF + GY Q D+ TV E++ R + D E +I+E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 968 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
++ G TVV H+PS + D++ +++ G
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-13
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 34/205 (16%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 905 KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME----- 959
R G Q E++L++ +R ++ M +E ++E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 960 -----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPS 1039
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 9e-13
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISG--YPKKQET 909
LN VS G ++G SG+GK+TL +LAG + + +G+I + G K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 910 --FARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
F R Q+ S P TV L P + +R+ E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQRI--AELLDQVGLPP 132
Query: 966 --LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 SFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-12
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 44/216 (20%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG---HNMDEFV 192
+L V+ + P +LGP SGK+TLL LAG LDP L G VT +G ++D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP---LQGEVTLDGVPVSSLDQDE 406
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+R + +Q D H+ + TVRE L + +PD +
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLA-------------------------RPDATDEE 440
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
AL G D+ + L DT++G E +SGG+R+R+ L+ A
Sbjct: 441 LWAALERVGLA-----DW---LRALPDGLDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348
L +DE + LD+ T +++ L L+G V+
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 30/216 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK-QETFARI 913
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 914 -SG----YCEQNDIH-SPNVTVYESLLYSAWL-RLPPD---VDSET-RRMFLEEIMEL-V 961
+G Y E +H P +TV E+L +L +LP V+ E++ L V
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
+++P + LS QR+ + IA L N +I DEPTS L AR + R +
Sbjct: 131 DIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057
R GR ++ H+ +IF D + + K G Y
Sbjct: 184 RELRAEGRVILYVSHRME-EIFALCDAITVFKDGRY 218
|
Length = 501 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 14/187 (7%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK-KQETFA 911
V++N +S G L+G +GAGK+T+ +L G + G I + G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 912 RIS-GYCEQNDIHSPNVTVYESLL-YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R++ G Q D P TV E+LL + + + + R I L+E L +S
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM-------STREIEAVIPSLLEFARL-ES 127
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
+ V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 128 KADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 1030 TVVCTIH 1036
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-12
Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 59/268 (22%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191
L D+N +K +LT L+G +GK+TLL L G L P+ G + NG ++ +
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDL 388
Query: 192 VP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
P ++ +++SQ+ ++ T+RE + + P
Sbjct: 389 SPEAWRKQISWVSQNP-YLFAGTIRENILLA---------------------------RP 420
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
D + + + ++V K GL DT++G+ G+SGGQ +R+ L+
Sbjct: 421 DAS---DEEIIAALDQAGLLEFVPKPDGL----DTVIGEGG-AGLSGGQAQRLALARALL 472
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-----FDD 363
PA L +DE + LD+ T I+ +L++ T ++ T+ L D
Sbjct: 473 SPASLLLLDEPTAHLDAETEQIILQALQE--LAKQKTVLVI-------THRLEDAADADR 523
Query: 364 IILISEGQIVFQGPREHVLE---FFKSM 388
I+++ G++V QG E + E + ++
Sbjct: 524 IVVLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 60/251 (23%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
L DV+ V+P R LLGP +GK+TL L G+++ GH++ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 197 AAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
A + Q +++VR+ L + A G LSR E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARI--------- 113
Query: 254 MKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV-GPAL 312
+ LA LGL AD V R ++GG R+RV L+ PAL
Sbjct: 114 AELLAR---------------LGLAERADDKV-----RELNGGHRRRVEIARALLHRPAL 153
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQI-----IHILNGTAVISLLQPAPETYDLFDDIILI 367
L +DE + GLD ++ I +R + + +L T ++ ++ D ++++
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 368 SEGQIVFQGPR 378
G+++ G
Sbjct: 206 HRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 67/262 (25%), Positives = 109/262 (41%), Gaps = 61/262 (23%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
LKDV+ + P L+GP +GK+TLL L G ++P+ SG V +G ++++
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKG 70
Query: 194 Q--RTA----AYISQHDVHIGEMTVRET-----LAFSARCQGVGSRYDMLVELSRREKDA 242
+ R I Q I ++V E L + + + + EK
Sbjct: 71 KALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRS------LFGLFPKEEK-- 122
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
+ALA ++ +GL A D++ SGGQ++RV
Sbjct: 123 -----------QRALA------------ALERVGLLDKAYQRA-DQL----SGGQQQRVA 154
Query: 303 TGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL- 360
L+ P L L DE LD +++ Q++ L++I T ++SL Q DL
Sbjct: 155 IARALMQQPKLIL-ADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLA 208
Query: 361 ---FDDIILISEGQIVFQGPRE 379
D I+ + +G+IVF GP
Sbjct: 209 REYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 49/261 (18%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
T + DV+ V+P + L+GP +GKTTL + G PS SG V + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 194 QRTAAY-IS---QHDVHI-GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
R A I+ Q + +TV E +A A + S + E++A
Sbjct: 74 HRIARLGIARTFQI-TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR----- 127
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+A +++ +GL AD G+ +S GQ++R+ L
Sbjct: 128 -----ERARE------------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALA 165
Query: 309 -GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPETYDLFD 362
P L L +DE + GL+ T ++ +R++ T ++ L+ L D
Sbjct: 166 TQPKL-LLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLAD 218
Query: 363 DIILISEGQIVFQGPREHVLE 383
I++++ G+++ +G E V
Sbjct: 219 RIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 62/253 (24%), Positives = 99/253 (39%), Gaps = 56/253 (22%)
Query: 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH--NM 188
KK + V+ VKP +T LLGP +GKTT L LAG L+P +G T +G
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ +R ++S +T RE L + A G+
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL----------------------- 108
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+G E + + + LG++ D VG G S G R++V LV
Sbjct: 109 -----------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALV 152
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN-----GTAVISLLQPAPETYDLFDD 363
L +DE +TGLD V + R + + G ++ E L D
Sbjct: 153 HDPPVLLLDEPTTGLD-------VMATRALREFIRQLRALGKCILFSTHIMQEVERLCDR 205
Query: 364 IILISEGQIVFQG 376
++++ G++V++G
Sbjct: 206 VVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 13/206 (6%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFA-RI 913
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I+++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
G+ Q+ ++TV +++ + +R P + R +EE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR---Y 127
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 1032
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 1033 CTIHQPSIDIFEAFDELFLMKRGGYE 1058
H + E D + +M G E
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIE 210
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 2e-12
Identities = 57/259 (22%), Positives = 94/259 (36%), Gaps = 57/259 (22%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
K IL V+ V + LLG +GKTTLL + G L P SG + ++G ++
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLP 68
Query: 193 PQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
P A Y+ + E+TV E L A + A K
Sbjct: 69 PHERARAGIGYVPEGRRIFPELTVEENLLLGA----------------YARRRAKRKARL 112
Query: 249 D--IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
+ ++F + Q A T+ SGG+++ +
Sbjct: 113 ERVYELFPRLKERRKQLAG-----------------TL---------SGGEQQMLAIARA 146
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISLLQPAPETYDLFDDI 364
L+ L +DE S GL IV + + I L G ++ + Q A ++ D
Sbjct: 147 LMSRPKLLLLDEPSEGLAPK----IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRA 202
Query: 365 ILISEGQIVFQGPREHVLE 383
++ G++V +G +L
Sbjct: 203 YVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGNIK-ISGY 903
+ K +L GV+ + G + A+MG +G+GK+TL + G T G I + + I
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL 73
Query: 904 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW--LRLPPDVDSETRRMFLEEIMELV 961
E Q + P VT L +A R + E + L+E EL+
Sbjct: 74 SP-DERARAGIFLAFQYPVEIPGVTN-SDFLRAAMNARRGARGILPEFIK-ELKEKAELL 130
Query: 962 ELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L+ L + + G S ++KR I L+ P + +DEP SGLD A IV
Sbjct: 131 GLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAE 185
Query: 1020 TVRNTVDTGRTVVCTIHQPSI 1040
+ + GR V+ H +
Sbjct: 186 GINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNIKISGYPKKQET 909
+LN +S + G +TAL+G +G GK+TL+ A R ++G G+ IS +Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 910 FARISGYCEQNDIHSPNVTVYESLLY------SAWLRLPPDVDSETRRMFLEEIMELVEL 963
AR Q+ + +TV E + Y S W RL S + + ME +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRI 128
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
N L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 129 NHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183
Query: 1024 TVDTGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1056
G+TVV +H D+ +A D L ++ G
Sbjct: 184 LNTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-12
Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 820 LPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 879
L S+ FE+V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFS------------YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 880 TLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYS 936
TL+ +L T G I I I RI G Q D + T+ E++
Sbjct: 370 TLIKLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI-GIVSQ-DPLLFSGTIRENIALG 426
Query: 937 AWLRLPPDVDSETRRMFLEE-IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995
+++ + E I L + ++VG GV LS QR+RL IA L+
Sbjct: 427 RPDATDEEIEEALKLANAHEFIANLPDGY---DTIVGERGV-NLSGGQRQRLAIARALLR 482
Query: 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
NP I+ +DE TS LD A++ ++ + GRT + H+ S + D + ++ G
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 869 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQETFARISGYCEQNDIHSP 925
++G +G+GK+ L++ +AG + G I N K I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEE---IMELVELNPLRQSLVGLPGVSGLSTE 982
++TVY+++ Y R + E + + + E I L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1042
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1043 FEAFDELFLMKRG 1055
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 19/158 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
I E ++ N+T E+L L PD S ++E++ +V+L G
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLPD--SR-----IDEVLNIVDLTN-----TG 118
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-12
Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 47/252 (18%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ- 194
+L+D++ + P ++G SGK+TLL L G P GR+ +G ++++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 195 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
R Y+ Q D + ++RE +A P+ +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 253 FMKALATEGQEASVVTDYVIKV-LGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
++A + + +++ + +G D T VG E +SGGQR+R+ L+
Sbjct: 579 IIEAA-----QLAGAHEFIENLPMGYD----TPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
L +DE ++ LD T I+ +L QI+ G VI ++ T D II++ +G+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQILQ---GRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 372 IVFQGPREHVLE 383
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNIKISG-----YPKKQ 907
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
R G Q+ + P+++V ++LL++ LP + RR +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 27/214 (12%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP----KKQE 908
V+L+ VS G +T+++G +GAGK+TL+ + R +G I I G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD---VDSETRRMFLEEIMELVELNP 965
++S ++N I+S +TV + + + R P + E RR+ + E +E + L
Sbjct: 73 LAKKLSILKQENHINS-RLTVRDLVGFG---RFPYSQGRLTKEDRRI-INEAIEYLHLED 127
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
L + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 128 LSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 1026 DT-GRTVVCTIHQPSIDIFEA---FDELFLMKRG 1055
D G+T+V +H DI A D + +K G
Sbjct: 183 DELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 20/166 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 912 RISGYCE--QNDIHSPNVTVYESLL------YSAWLRLPPDVDSETRRMFLEEIMELVEL 963
R +G Q N+TV+E+L S + L + +E + +EE++E + L
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-IEEVLETIGL 133
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 134 ADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
+N VS G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 912 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRL-PPDVDSETRRMFLEEIMELVELNPLRQS 969
R+ GY Q +TV ++++ A L + D+ R+ L+ ++E + LR S
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHITHLRDS 135
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D G
Sbjct: 136 ----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGI 190
Query: 1030 TVVCTIH 1036
V+ T H
Sbjct: 191 GVLITDH 197
|
Length = 243 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-12
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 37/198 (18%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQET 909
+V + VS + + G + AL+G +GAGK+TLM +L G + G I++ G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE----- 67
Query: 910 FARISGYCEQND--------IHS-----PNVTVYESLLYSAWLRLPPDVDSETRRMFLEE 956
RI D +H P +TV E+++ +D R ++E
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKE 123
Query: 957 IMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
+ E + ++P + V+ LS +++R+ I L ++ +DEPT+ L + A
Sbjct: 124 LSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 1015 AIVMRTVRNTVDTGRTVV 1032
+ +R G+T++
Sbjct: 177 DELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 41/242 (16%)
Query: 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886
+ F++V + D +L +S G AL+G SG+GK+TL++++
Sbjct: 1 VEFKNVTFRYP-----------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49
Query: 887 GRKTGGYITGNIKISGYPKKQETFA---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
+ +G I I G+ + T A R G Q D+ N TV E++ Y P
Sbjct: 50 --RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----P 101
Query: 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLP-------GVSG--LSTEQRKRLTIAVELV 994
EE+ E + ++ LP G G LS QR+R+ IA L+
Sbjct: 102 GAT-------REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054
+P I+ +DE TS LD + +V + + RT H+ S I A D + +++
Sbjct: 155 KDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLED 211
Query: 1055 GG 1056
G
Sbjct: 212 GK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP---KKQ 907
+L +L GV + G A++G SG+GK+TL+ VLAG +G +++ G P +
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKLDE 79
Query: 908 ETFARIS----GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
+ A + G+ Q+ PN+T E++ LP ++ E+ L+E
Sbjct: 80 DARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALLEA 133
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMR 1019
L + L P LS +++R+ +A P ++F DEPT LD + A ++
Sbjct: 134 VGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191
Query: 1020 TVRNTVDTGRTVVCTIHQPSI 1040
R + G T+V H P +
Sbjct: 192 LNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 5e-12
Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 43/251 (17%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG---HNMDEF 191
I+ V+ P LT LLGP SGK+TLL LAG L P +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 192 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
R A + Q +TVR+ +A L R
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVA-----------------LGRIP------------ 102
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
A + + V D + L + + D + +SGG+R+RV L
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTEL-----SHLADRDMSTLSGGERQRVHVARALAQEP 156
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
L +DE + LD + + +R++ G V++ L D ++++ G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 372 IVFQGPREHVL 382
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 14/214 (6%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNIKISGYPKKQETFA 911
+L +S PG A++G +GAGKTTL+ +L G + G +T + G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 912 RISGYC--EQNDIHSPNVTVYESLL--YSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ G E ++ TV + +L + A + + + + + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1025
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253
|
Length = 257 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 6e-12
Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 52/260 (20%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
L DV+ V+P + L+GP +GKTTL ++G L P+ SG V ++G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 194 QRTAAY-IS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
A I Q E+TV E + +A+ + + +L+ +RRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE------- 119
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
+ A E +++ +GL AD G+ +S GQ++R+ L
Sbjct: 120 ----ARERAEE----------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALAT 160
Query: 310 -PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI------SLLQPAPETYDLFD 362
P L L +DE + GL+ T ++ +R++ G V+ ++ L D
Sbjct: 161 DPKL-LLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVV------MSLAD 211
Query: 363 DIILISEGQIVFQGPREHVL 382
+ ++ +G+++ +G + V
Sbjct: 212 RVTVLDQGRVIAEGTPDEVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 40/240 (16%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
F L DV+ + L LLGP SGKTTLL +AG P SG + + G + +
Sbjct: 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPV 71
Query: 194 Q-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
Q R ++ QH MTV + +AF R + R P+ +I
Sbjct: 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSER----------------PPEAEIRA 115
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
+ L +K++ LD AD +SGGQR+RV L
Sbjct: 116 KVHEL--------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPK 156
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
L +DE LD+ ++ LR++ L+ T V + E ++ D ++++++G+I
Sbjct: 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRI 215
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 59/258 (22%), Positives = 114/258 (44%), Gaps = 59/258 (22%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ- 194
+L+D++ + L+GP SGK+TL+ + D SGR+ +GH++ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 195 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
R +SQ DV + TV E +A+ +P +
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAYG-------------------------RPGATREE 107
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGEMLVGP 310
+A A+ +++++ L DT++G+ RG+ SGGQR+R+ L+
Sbjct: 108 VEEAA-----RAANAHEFIME---LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPETYDLFDDII 365
L +DE ++ LD+ + + +L +++ N T + S ++ A D I+
Sbjct: 157 PPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA-------DRIV 207
Query: 366 LISEGQIVFQGPREHVLE 383
++ +G+IV +G E +L
Sbjct: 208 VLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 8e-12
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 74/270 (27%)
Query: 122 NCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-PSLKLSGR 180
N I +K LKDVN ++ ++GP SGK+T LL L G LD P+ SG
Sbjct: 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGE 61
Query: 181 VTYNGHNMDEFVPQRTAA-------YISQ-HDVHIGEMTVRETLAFSARCQGVGSRYDML 232
V NG ++ + + A ++ Q ++ + ++TV E + G
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGK------- 113
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
S + + +++VLGL D +L+
Sbjct: 114 ---SAGRRKRAAE------------------------ELLEVLGL--------EDRLLKK 138
Query: 293 ----ISGGQRKRVTTGEMLVGPALALFMDEISTG-LDSSTTFQIVTSLRQIIHILNGTAV 347
+SGGQ++RV L+ + DE TG LDS T +++ LR++ T +
Sbjct: 139 KPSELSGGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRELNKERGKTII 197
Query: 348 ISLLQPAPETYDL-----FDDIILISEGQI 372
+ T+D D +I + +G+I
Sbjct: 198 MV-------THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG-----YPKKQET 909
L+ VS R G L G SGAGKTTL+ +L G T G ++I+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 910 FARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
R G Q+ P+ TVYE++ +R + + + R + + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH--- 129
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1029 RTVVCTIHQPSI 1040
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM--DEF 191
F ++ V+ V+ + LLGP +GKTT + L L P+ SGR T GH++ +
Sbjct: 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPR 69
Query: 192 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+R + Q E+T E L AR GV RRE+
Sbjct: 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRER----------- 111
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGE-MLVGP 310
D ++ +GL D +++ SGG R+R+ ++ P
Sbjct: 112 ----------------IDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRP 150
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370
+ LF+DE + GLD T + + ++ G ++ E L D + +I G
Sbjct: 151 EV-LFLDEPTIGLDPQTRAHVWEYIEKLKE-EFGMTILLTTHYMEEAEQLCDRVAIIDHG 208
Query: 371 QIVFQG 376
+I+ +G
Sbjct: 209 RIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-11
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 41/205 (20%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP--- 193
L+ V+ V P L+GP +GK+TLL L G +DP+ G + NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
+ A++ QH + T+ E + + + + E R +D F
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLARP----DASDAEIREALER---------AGLDEF 440
Query: 254 MKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA 313
+ AL GL DT +G+ G+SGGQ +R+ + A
Sbjct: 441 VAALP----------------QGL----DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 314 LFMDEISTGLDSSTTFQIVTSLRQI 338
L +DE + LD+ T +++ +LR +
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 61/266 (22%), Positives = 102/266 (38%), Gaps = 69/266 (25%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
IL V+ V + +LG SGK+TLL + G L P G + +G ++ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 195 RTAA------YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ Q +TV E +AF L E ++ P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 249 DID--VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
I V MK ++++GL D +SGG RKRV
Sbjct: 120 LIRELVLMK----------------LELVGLR----GAAADLYPSELSGGMRKRV----- 154
Query: 307 LVGPALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPET 357
ALA LF+DE ++GLD + I +R++ L T VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLT-VIMVTHDLDSL 209
Query: 358 YDLFDDIILISEGQIVFQGPREHVLE 383
+ D + ++++G+++ +G E +L
Sbjct: 210 LTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 912 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R G Q+ P+ TVYE++ LP V + R + E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1031 VVCTIH 1036
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 63/203 (31%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNIKISGYP--KKQ 907
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+I I +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 908 ETFARI----SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
+ R G+ QN P+ TV E+++ P V E + EE
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPK----EEATARA-- 125
Query: 964 NPLRQSL--VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
R+ L VGL G LS Q++R+ IA L P +I DEPTS LD
Sbjct: 126 ---RELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPS 1039
V+ T+R RT+V H+ S
Sbjct: 183 VLNTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 64/257 (24%), Positives = 102/257 (39%), Gaps = 93/257 (36%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
LKD+N V L ++GP SGK++LL AL G+L+ KLSG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP---DPDIDV 252
+ AY+SQ + I T+RE + F G +D R + IK +PD+++
Sbjct: 67 SIAYVSQ-EPWIQNGTIRENILF-------GKPFD-----EERYEKV-IKACALEPDLEI 112
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGEMLVGP 310
TE +G+ +GI SGGQ++R+
Sbjct: 113 LPDGDLTE------------------------IGE---KGINLSGGQKQRI--------- 136
Query: 311 ALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHIL-NGTAVI------SLLQPA 354
+LA +D+ + +D+ I + I+ +L N I LL A
Sbjct: 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC--ILGLLLNNKTRILVTHQLQLLPHA 194
Query: 355 PETYDLFDDIILISEGQ 371
D I+++ G+
Sbjct: 195 -------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 1e-11
Identities = 66/272 (24%), Positives = 104/272 (38%), Gaps = 82/272 (30%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
T+L DV+ ++P + +LGP +GK+TLL AL+G+L P SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 195 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
A A + QH +L+F + V V + R
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------VAMGR-------------- 101
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV--- 308
E + + + L + +SGG+++RV +L
Sbjct: 102 ---APHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRVQLARVLAQLW 153
Query: 309 ---GPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL---------NGTAVISLLQPAPE 356
GP L +DE ++ LD L H+L G AVI +L
Sbjct: 154 EPDGPPRWLLLDEPTSALD----------LAHQHHVLRLARQLAHERGLAVIVVL----- 198
Query: 357 TYDL------FDDIILISEGQIVFQGPREHVL 382
+DL D I+L+ +G++V G VL
Sbjct: 199 -HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 46/220 (20%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGY-P-KKQETFARISGYCEQ 919
G + +G +GAGK+T + +L G T G + +++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV-- 102
Query: 920 NDIHSPNVTVYESLLYSAWLRLP--------------PDVDSETRRMFLEEIMELVELNP 965
+ L W LP PD + R FL EI++L
Sbjct: 103 -------MGQKLQL----WWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-- 149
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1024
L+ V LS QR R +A L+ P ++F+DEPT GLD A A + ++
Sbjct: 150 LKWP------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN 203
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064
+ TV+ T H DI D + L+ + G ++ G L
Sbjct: 204 EERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI- 348
LRG+S QRKR+T G L LF+DE ++GLDS + IV L+++ +G A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 349 SLLQPAPETYDLFDDIILISE-GQIVFQG 376
++ QP+ ++ FD ++L+ G+ V+ G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 2e-11
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM--- 188
K T L D++ V+ + LLGP +GKTTL+ + G L P SG + G ++
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFS 219
E V +R Y+ + +TVRE L S
Sbjct: 68 PEEVKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 68/287 (23%), Positives = 113/287 (39%), Gaps = 87/287 (30%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL-SGRVTYNGHNMDEF 191
K ILK VN VK + ++GP SGK+TL + G P ++ G + ++G +
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED---- 69
Query: 192 VPQRTAAYISQHDVHIGEMTVRE------TLAFS--ARCQGVGSRYDMLVELSRREKDAN 243
I E++ E LAF GV + + ++ R
Sbjct: 70 ---------------ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARG 114
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR-----GISGGQR 298
I P+ +K A ++LGLD +E L G SGG++
Sbjct: 115 I--LPEFIKELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEK 150
Query: 299 KRVTTGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN-------GTAVISL 350
KR ++L+ P LA+ +DE +GLD + +L+ + +N G +I+
Sbjct: 151 KRNEILQLLLLEPKLAI-LDEPDSGLD-------IDALKIVAEGINALREEGRGVLIITH 202
Query: 351 LQPAPETYDLFDDII-----LISEGQIVFQGPREHVLEFFKSMGFEC 392
Q L D I ++ +G+IV G E + E + G++
Sbjct: 203 YQ------RLLDYIKPDKVHVLYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 2e-11
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKISGYPKKQ--- 907
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G ++++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 908 ETFARISGYCEQNDIHSPNV----TVYE--SLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
AR Q ++ TV E ++ + + D+ + + V
Sbjct: 72 AELARRRAVLPQ----HSSLSFPFTVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQV 122
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1015
+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1016 IVMRTVRN-TVDTGRTVVCTIH 1036
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 2e-11
Identities = 60/269 (22%), Positives = 99/269 (36%), Gaps = 65/269 (24%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
K L+ V+ V+ + LLG +GKTTLL + G + P SGR+ ++G ++
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 193 PQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
P A AY+ + +TV E L L+ R + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENL---------------LLGAYARRDKEAQERDL 116
Query: 249 DI--DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
+ ++F + Q A T+ SGG+++ +
Sbjct: 117 EEVYELFPRLKERRNQRAG-----------------TL---------SGGEQQMLAIARA 150
Query: 307 LVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL---QPAPETYDLFD 362
L+ P L L +DE S GL IV + + I L +++L Q A ++ D
Sbjct: 151 LMSRPKL-LLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIAD 205
Query: 363 DIILISEGQIVFQGP------REHVLEFF 385
++ G+IV G V E +
Sbjct: 206 RGYVLENGRIVLSGTAAELLADPDVREAY 234
|
Length = 237 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 2e-11
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS------GY 916
RPG L+GV+GAGKTT +L G T +G+ ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 917 CEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE--LNPLRQSLVGLP 974
C Q D +T E L A LR P EEI ++ + L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPA----------EEIEKVANWSIQSLGLSLYADR 2066
Query: 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T
Sbjct: 2067 LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126
Query: 1035 IHQPSIDIFEAF-DELFLMKRGGYE 1058
H S++ EA L +M +G ++
Sbjct: 2127 SH--SMEECEALCTRLAIMVKGAFQ 2149
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
L VS G L ++G SG GKTTL++++AG T G+I+++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVG 972
G QN+ P + V +++ + LR ++ RR +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 23/212 (10%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ET 909
+L G+S A + G ++G SG+GK+TL +L G +G++++ G +Q E
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSE-----TRRMFLEEIMELVELN 964
R GY Q D+ + T+ E++ R + D E R L + EL+
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEKVIEAAR---LAGVHELILRL 458
Query: 965 PL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
P + +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 459 PQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G TVV H+PS + D++ +++ G
Sbjct: 518 AKARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKK 906
V L+GVS + G L+G SG GKTTL+ ++AG T G I I+ P
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-- 68
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
R QN P++TV+E++ + LRL + + + E ++LV+L
Sbjct: 69 --PHKRPVNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEALDLVQLEGY 123
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 124 ANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI-----SGYPKKQET 909
L ++ PG + L G SG+GKTTL+ ++ G ++ G++K+ G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 910 FARIS-GYCEQ--NDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
R + GY Q N + +T +++ + L L P++ + R ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG-- 132
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1025
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++
Sbjct: 133 -DHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ G T++ H I + D + M+ G
Sbjct: 190 EQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 44/226 (19%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKIS 901
D +L VS G A++G SG+GK+T++ DV +G I I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILID 61
Query: 902 GYPKK---QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIM 958
G + ++ R G Q D N T+ ++ Y PD ++ EE++
Sbjct: 62 GQDIREVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYGR-----PDA-TD------EEVI 108
Query: 959 ELVELNPLRQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
E + + ++ P G G LS +++R+ IA ++ NP I+ +DE TS L
Sbjct: 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168
Query: 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
D + +R V GRT + H+ S I A D++ ++K G
Sbjct: 169 DTHTEREIQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 24/224 (10%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIKISGYPKKQE-TFAR 912
L+ V G + AL+G SG+GK+TL+ L+G TG G +I++ G ++E AR
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 913 -------ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
+GY Q ++V E++L A P R +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP------FWRTCFSWFTREQKQRA 133
Query: 966 LRQ-SLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L+ + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 134 LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 1020 TVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062
T+R+ G TVV T+HQ +D + E + R G+ Y G
Sbjct: 194 TLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 82/275 (29%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL-SGRVTYNGHNMDEFVPQ 194
ILK VN VK + ++GP SGK+TL +AG PS ++ SG + + G ++ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPD 72
Query: 195 RTAA---YIS-QHDVHIGEMTVRETL--AFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
A +++ Q+ I ++ E L A +AR R + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNAR---------------RSARG-----EE 112
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR-----GISGGQRKRVTT 303
+D+ + + +LG+D +E L G SGG++KR
Sbjct: 113 PLDLL--DFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEI 155
Query: 304 GEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN-------GTAVIS------ 349
+M + P LA+ +DEI +GLD + +L+ + +N +I+
Sbjct: 156 LQMALLEPKLAI-LDEIDSGLD-------IDALKIVAEGINRLREPDRSFLIITHYQRLL 207
Query: 350 -LLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383
++P D + ++ +G+IV G E E
Sbjct: 208 NYIKP--------DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 879 TTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARIS-GYCEQNDIHSPNVTVYESLLY 935
+TL+ ++ G + T G I + G R G Q+ P +TV E+L +
Sbjct: 1 STLLKLITGLLQPTSGTILLD-GEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995
+ EE +E V L V LS Q++R+ IA L+
Sbjct: 60 GL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALLK 107
Query: 996 NPSIIFMDEPTS 1007
P ++ +DEPT+
Sbjct: 108 KPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 28/166 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNIKISGYPKKQETFA 911
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++++ G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 912 --RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R GY + H+P +Y + +L+ + ++ + + E++EL
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIEL------ 120
Query: 970 LVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
VGL + LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 121 -VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 49/182 (26%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISG---YP 904
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 905 KKQETFA---RISGYCEQNDIHSPNV---TVYESLLYSAWLRLPPDVDSETRRMFLEEIM 958
K + R+ G Q PN ++Y+++ Y LRL D E L+EI+
Sbjct: 79 PKVDVVELRRRV-GMVFQ----KPNPFPMSIYDNVAYG--LRLHGIKDKE-----LDEIV 126
Query: 959 ELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
E + L++ L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 127 E----SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1009 LD 1010
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 61/259 (23%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF--- 191
LK++N + P ++GP +GK+TLL + ++PS SG + G ++ +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 192 ----VPQRTAAYISQHDVHIGEMTVRET-----LAFSARCQGVGSRYDMLVELSRREKDA 242
+ +R I QH I +TV E L + + + R+ S +K
Sbjct: 73 KLRKLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF------SEEDK-- 123
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
+AL ++ +GL A D++ SGGQ++RV
Sbjct: 124 -----------ERAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVA 155
Query: 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-- 360
L + DE LD T+ Q++ L++I T +I+L Q DL
Sbjct: 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAK 210
Query: 361 --FDDIILISEGQIVFQGP 377
D I+ + G+IVF G
Sbjct: 211 KYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 51/258 (19%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP- 193
LKDVN + + ++GP +GK+TLL +L G +DP+ SG + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 194 -----QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVEL-SRREKDANIKPD 247
+R I Q + ++V E + G S + L L S+ +K +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQALDAL 132
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
+ + KA A T+ SGGQ++RV L
Sbjct: 133 ERVGILDKAYQR---------------------ASTL---------SGGQQQRVAIARAL 162
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL----FDD 363
V + DE LD + +++ L+ I T +++L Q DL D
Sbjct: 163 VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----VDLAKKYADR 217
Query: 364 IILISEGQIVFQGPREHV 381
II + G+IVF GP +
Sbjct: 218 IIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 52/275 (18%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
S+ K LK+V+ V+ ++LGP SGK+ LL +AG + P SG++ NG ++
Sbjct: 7 SKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDI 63
Query: 189 DEFVPQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
P+ R +Y+ Q+ MTV + +A+ G+ R E+ R+ +
Sbjct: 64 TNLPPEKRDISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERKVLE------ 112
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
+ ++LG+D + + +SGG+++RV L
Sbjct: 113 -----------------------IAEMLGID-----HLLNRKPETLSGGEQQRVAIARAL 144
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367
V L +DE + LD T ++ L++I G V+ + E + L D + ++
Sbjct: 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRK-EFGVTVLHVTHDFEEAWALADKVAIM 203
Query: 368 SEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
G+++ G E V F+ PK + VA+FL
Sbjct: 204 LNGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 4e-11
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQND--- 921
G + AL+GV+G+GK+TL L G +G I I G P +Q + Y Q++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 922 ----IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977
+ +V + + WLR D R + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG----- 141
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 44/245 (17%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
R T L D+N + +LLGP GKTT L +AG +P+ SGR+ G ++
Sbjct: 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVT 65
Query: 190 EFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ P R A + Q+ MTV + +AF + + V E+ R ++
Sbjct: 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-----EIDERVRE------- 113
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
V ++L ++ + D + +SGGQR+RV G +V
Sbjct: 114 ----------------------VAELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIV 146
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368
MDE + LD+ Q+ L+++ L GT I + E + D I +++
Sbjct: 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMN 205
Query: 369 EGQIV 373
+GQI
Sbjct: 206 DGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-11
Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 65/304 (21%)
Query: 90 FEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRL 149
F L+ E G RA+ +E F N P R + L ++ +++P
Sbjct: 308 FTLLDSPPEKDTGTRAIER----ARGDVE-FRNVTFRYPGRDRP--ALDSISLVIEPGET 360
Query: 150 TLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQHDVH 206
L+G SGK+TL+ + +P SG++ +GH++ ++ R A +SQ DV
Sbjct: 361 VALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ-DVV 416
Query: 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASV 266
+ T+ +A+ Q D E+ R A +
Sbjct: 417 LFNDTIANNIAYGRTEQ-----ADR-AEIERALAAAYAQ--------------------- 449
Query: 267 VTDYVIKV-LGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDS 325
D+V K+ LGL DT +G+ + +SGGQR+R+ L+ A L +DE ++ LD+
Sbjct: 450 --DFVDKLPLGL----DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDN 502
Query: 326 STTFQIVTSLRQIIHILNG--TAVI----SLLQPAPETYDLFDDIILISEGQIVFQGPRE 379
+ + +L ++ G T VI S ++ A D I+++ +G+IV +G
Sbjct: 503 ESERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGTHN 552
Query: 380 HVLE 383
+L
Sbjct: 553 ELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 5e-11
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ- 194
+LKDV+ +KP ++GP SGK+TLL L DP+ SG + +G ++ + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 195 --RTAAYISQHDVHIGEMTVRE 214
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-11
Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 29/213 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKISGYPKKQE--- 908
++ V+ G L+G SG+GKTT + + I G I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
R GY Q P++TV E++ L D E + +E+++LV L+P +
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDP-SE 127
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTV 1025
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 128 YADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE- 184
Query: 1026 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
G+T+V H DI EA D + +M G
Sbjct: 185 -LGKTIVFVTH----DIDEALKLADRIAVMDAG 212
|
Length = 309 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQ 907
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 908 -ETFARISGYCEQNDIHSPNV----TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE 962
+ G Q+ N+ TV+E++ + P ++ + + + EL+E
Sbjct: 78 LRQLRQKIGMIFQH----FNLLSSRTVFENVAF------PLELAGVPKAEIKQRVAELLE 127
Query: 963 LNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAI 1016
L VGL + LS Q++R+ IA L NP I+ DE TS LD +I
Sbjct: 128 L-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1055
+ + G T+V H+ +++ + D + ++ +G
Sbjct: 181 LELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFA---RISGYCE 918
G+ TAL G SG+GKT+L++++AG R G I N ++ +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 919 QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978
Q+ P+ TV +L Y W + D +++ L+ + L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMWKSMRAQFD---------QLVALLGIEHL---LDRYPGT-- 128
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-11
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 33/221 (14%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISG---- 902
D L G++ G + AL+G +GAGK+TL G + T +G + I G
Sbjct: 12 PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIK 67
Query: 903 YPKKQETFARIS-GYCEQN---DIHSPNVTVYESLLYSAW-LRLPPDVDSETRRM-FLEE 956
Y KK R + G QN + +P TV E + + L L + + E R L+
Sbjct: 68 YDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVEKRVKEALKA 124
Query: 957 I-MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+ ME E P LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 125 VGMEGFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1055
+M+ + + G T++ + H +D+ + D++++M G
Sbjct: 175 QIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 44/193 (22%), Positives = 69/193 (35%), Gaps = 46/193 (23%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+ ++ + +L GP SGKTTLL +AG L P +G + +G ++D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAA-- 110
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALAL 314
AL +GL A G +S GQ++RV +LV
Sbjct: 111 -ALEA---------------VGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 315 FMDEISTGLDSST 327
+DE + LD++
Sbjct: 150 ILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 7e-11
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 20/190 (10%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L GVS G + AL+G +GAGKTTL+ + G R G I I+G P
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP----PHE 74
Query: 912 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLR 967
R Y + P +TV E+LL A+ R D E + LEE+ EL L R
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKERR 130
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 131 NQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 1028 GRTVVCTIHQ 1037
G + + Q
Sbjct: 186 GGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 7e-11
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 845 QGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904
QG + +L +L GV + G AL+G SG+GK+TL+ +LAG G +G + + G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 905 -------KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI 957
+ + A+ G+ Q+ + P + E++ A LR E+ R
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR------GESSRQSRNGA 127
Query: 958 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 74/261 (28%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH--- 186
KK+ L V+ + + LLGP +GKTTL+ LA PS SG + +G
Sbjct: 11 GKKR--ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVL 64
Query: 187 -NMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
+ +R Y+ Q TVRE L + A +G+ +E A +
Sbjct: 65 KQPQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI----------PSKEVKARV- 111
Query: 246 PDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGE 305
D V++++ L + + +SGG R+RV +
Sbjct: 112 -----------------------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQ 143
Query: 306 MLVG-PALALFMDEISTGLDS------STTFQIVTSLRQII---HILNGTAVISLLQPAP 355
LVG P++ L +DE + GLD + R +I HI+
Sbjct: 144 ALVGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE--------- 193
Query: 356 ETYDLFDDIILISEGQIVFQG 376
L + + ++++G++VF+G
Sbjct: 194 ---SLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 8e-11
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFA 911
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R QN P++ V +++ + + P D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1029
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1030 TVVCTIHQPSIDIFEAFDELFLMKRG 1055
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 64/224 (28%), Positives = 93/224 (41%), Gaps = 49/224 (21%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKISGYPKKQET- 909
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 910 --FARISGYCEQNDIHSPNVTVYE------SLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
R GY Q P++TV E LL W + E R +E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 962 ELNPLRQSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
L+P P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 122 GLDP--AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRD 172
Query: 1021 ------VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
R + G+T+V H DI EAF D + +MK G
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 9e-11
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 21/210 (10%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKK----- 906
+L G++ F +T L+G +G GK+TL L+G R G + K Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
++ A + EQ + T +S + + L TRR ++E + LV+
Sbjct: 76 RQQVATVFQDPEQQIFY----TDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHF 129
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
R + LS Q+KR+ IA LV + +DEPT+GLD ++ +R V
Sbjct: 130 RHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 1027 TGRTVVCTIHQPSID-IFEAFDELFLMKRG 1055
G V+ + H ID I+E D ++++++G
Sbjct: 185 QGNHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-10
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 48/222 (21%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFA 911
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 912 RISG---YCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRR-----MFLEEIM----- 958
++ +Q DI TV ++L + W PD ++ R + I
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPD--ADLVRACKDAAIHDVITSRPGG 604
Query: 959 ---ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD
Sbjct: 605 YDAELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652
Query: 1016 IVMRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1055
I+ +R R C I H+ S I + DE+ +++RG
Sbjct: 653 IIDDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 28/216 (12%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNIKISGY-------PKKQE 908
VS PG + ++G SG+GKTTL+ ++GR G +T ++ ++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 909 TFARIS-GYCEQN--DIHSPNVT----VYESLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
R G+ QN D V+ + E L+ + R ++ +E + +LEE V
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQD-WLEE----V 138
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
E++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +
Sbjct: 139 EIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 1022 RNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056
R V + G VV H ++ A D L +MK+G
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 50/213 (23%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNIKISG---YPK 905
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 906 KQETF---ARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
+ +T I +Q PN +++YE+++Y LRL D + L+E +E
Sbjct: 78 RTDTVDLRKEIGMVFQQ-----PNPFPMSIYENVVYG--LRLKGIKDKQV----LDEAVE 126
Query: 960 LVELNPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
+SL G GLS Q++R+ IA L +P II +DEPTS
Sbjct: 127 --------KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178
Query: 1009 LDARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 1039
LD +A + T+ D T V ++ Q S
Sbjct: 179 LDPISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 65/257 (25%), Positives = 104/257 (40%), Gaps = 66/257 (25%)
Query: 131 KKKF---TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
K + +L D++ VK + LGP +GKTT + + G + P SG +T++G +
Sbjct: 7 TKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKS 63
Query: 188 MDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
+ +R A I + +T RE L AR G+ + I
Sbjct: 64 YQKNIEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------RKKRI- 107
Query: 246 PDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGE 305
D V+ V+GL A V G S G ++R+
Sbjct: 108 -----------------------DEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIAL 139
Query: 306 MLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILN---GTAVIS--LLQPAPETYD 359
L+G P L L +DE + GLD + LR++I L T +IS LL E
Sbjct: 140 ALLGNPDL-LILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS---EIQK 191
Query: 360 LFDDIILISEGQIVFQG 376
+ D I +I++G+++ +G
Sbjct: 192 VADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 57/256 (22%), Positives = 89/256 (34%), Gaps = 66/256 (25%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM---- 188
F + VN V+ + LGP +GKTT + L L P+ SG G+++
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREP 61
Query: 189 DE------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242
+ VPQ + ++T RE L R G L + E +
Sbjct: 62 RKVRRSIGIVPQYASVDE--------DLTGRENLEMMGRLYG----------LPKDEAEE 103
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
+ ++++ L D + SGG R+R+
Sbjct: 104 RAEE------------------------LLELFEL-----GEAADRPVGTYSGGMRRRLD 134
Query: 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISLLQPAPETYDL 360
L+ LF+DE +TGLD T I I L G ++ E L
Sbjct: 135 IAASLIHQPDVLFLDEPTTGLDPRTRRAI----WDYIRALKEEGVTILLTTHYMEEADKL 190
Query: 361 FDDIILISEGQIVFQG 376
D I +I G+I+ +G
Sbjct: 191 CDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 59/283 (20%)
Query: 125 HILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184
H +++ ++D++ + + LG +GK+T L L G L P+ SG+V N
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVN 84
Query: 185 GHNMDEFVPQRTAAYISQHDVHIG-EMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
G P R ++ IG M + L + + + + V
Sbjct: 85 G-----KDPFRRR---EEYLRSIGLVMGQKLQLWWD-----LPALDSLEV-------LKL 124
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
I PD D F + L D++ ++L L+ + + R +S GQR R
Sbjct: 125 IYEIPD-DEFAERL-----------DFLTEILDLE----GFLKWPV-RKLSLGQRMRAEL 167
Query: 304 GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363
L+ P LF+DE + GLD + I L++ T +++ T+ FDD
Sbjct: 168 AAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-FDD 219
Query: 364 I-------ILISEGQIVFQGPREHVLEFF---KSMGFECPKRK 396
I +LI +GQ+VF G + E F K E + K
Sbjct: 220 IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAK 262
|
Length = 325 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L + G A++G SG+GK+TL+ +LAG G+I ++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLR-----LPPDVDSETRRMFLEEIMELVELNPLRQS 969
EQ + +V L+S LR PD E L ++ V L L +S
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE----LWAALQQVGLEKLLES 459
Query: 970 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 1023 NTVDTGRTVVCTIH 1036
+ G+T++ H
Sbjct: 519 EHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 54/225 (24%), Positives = 84/225 (37%), Gaps = 54/225 (24%)
Query: 791 IRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDD 850
R + L+ KR G ++ L FE+V D
Sbjct: 296 EERPVEEGKPLAFRFPP----PGKRLGKLV------LEFENVSKG------------YDG 333
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITG-NIKISGYPKK 906
+LL +S G A++G +GAGK+TL+ +LAG G G +KI + +
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH 393
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLR-LPPDVDSETRRMFLEEIMELVELNP 965
++ P+ TV E L PD D + R +L
Sbjct: 394 RDEL-------------DPDKTVLE------ELSEGFPDGDEQEVRAYLGRFG------- 427
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
P V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 428 FTGEDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 20/216 (9%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYITGNIK-ISGYPK 905
+ VS PG + ++G SG+GK+T LM +L GR T G + + + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 906 KQET--FARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
++ + Q+ + S P +T+ + + + L +R E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRA--VELLEQV 140
Query: 962 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 1021 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+++ + G V+ H + + E D + +M +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 54/276 (19%), Positives = 99/276 (35%), Gaps = 80/276 (28%)
Query: 125 HILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184
P+ L DV+ +K L+G SGK+TL A+ G L P+ SG + ++
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFD 65
Query: 185 GHNMDEFVPQ------RTAAYISQHDVHIGE--------MTVRETLAFSARCQGVGSRYD 230
G ++ + + + + Q + MT+ E +A R G S+ +
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQ------DPMSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 231 MLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290
+ + + + + E
Sbjct: 120 AR-KEAVLLLLVGVGLPEE---VLNRYPHE------------------------------ 145
Query: 291 RGISGGQRKRVTTGEMLVGPALA-----LFMDEISTGLDSSTTFQIVTSLRQIIHILNGT 345
+SGGQR+RV + ALA L DE ++ LD S QI+ L+++ L T
Sbjct: 146 --LSGGQRQRV----AIAR-ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198
Query: 346 AV-----ISLLQPAPETYDLFDDIILISEGQIVFQG 376
+ + ++ + D + ++ G+IV +G
Sbjct: 199 LLFITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 24/216 (11%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETF 910
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 911 ARIS-------GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
+ G+ Q P+ T E++ + +++ R E++E V L
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGL 131
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRT 1020
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M
Sbjct: 132 ---EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056
+ ++T VV H ++ + D + MK G
Sbjct: 187 LNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-10
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
++ AR Y ++V E+L + D E +EE + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGLNGFE 119
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1028 GRTVVCTIHQP 1038
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-10
Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK-- 906
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 907 -QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRM--FLEEIMELVEL 963
+ R G QN +++E++ A L D E RM E+I +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA--PLTLDEAWEAARMAGLAEDIRAM--- 574
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
P+ V G LS QR+RL IA LV P I+ DE TS LD R AIV
Sbjct: 575 -PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-10
Identities = 60/266 (22%), Positives = 97/266 (36%), Gaps = 67/266 (25%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191
++ LK+ N + +LG SGK+TLL LAG DP G +T NG +
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASL 405
Query: 192 VPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDML--VELSRREKDANIKP 246
Q T + ++Q VH+ T+R+ L + + L V L + + A
Sbjct: 406 DEQALRETISVLTQ-RVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA---- 460
Query: 247 DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
+G + E R +SGG+R+R+
Sbjct: 461 ------------PDGLNTWL--------------------GEGGRRLSGGERRRLALARA 488
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQ---------IIHILNGTAVISLLQPAPET 357
L+ A +DE + GLD T Q++ L + + H L G
Sbjct: 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER---------- 538
Query: 358 YDLFDDIILISEGQIVFQGPREHVLE 383
D II++ G+I+ +G +L
Sbjct: 539 ---MDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-10
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ VG G LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R +
Sbjct: 584 NTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICR 641
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
GRTV+ H+ + A D + ++++G
Sbjct: 642 GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 67/265 (25%), Positives = 108/265 (40%), Gaps = 80/265 (30%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
LK +N +K +T +LG +GK+TL L G L PS SGR+ ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPID------- 71
Query: 197 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKA 256
Y + G M +RE++ + DPD +F
Sbjct: 72 --YSRK-----GLMKLRESVGM-------------------------VFQDPDNQLF--- 96
Query: 257 LATEGQEASVVTDYVIKVLGLDVCADTM----------VGDEMLRG-----ISGGQRKRV 301
ASV D + L + D + G E L+ +S GQ+KRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 302 TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL- 360
+LV L +DE + GLD +I+ L ++ L T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 361 -----FDDIILISEGQIVFQG-PRE 379
D++ ++ EG+++ QG P+E
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 58/269 (21%)
Query: 132 KKFTILKDVNGI---VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
K + ++ + + R+ LGP +GK+T + + G L P SG V G ++
Sbjct: 10 KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDV 66
Query: 189 --DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP 246
+ QR Y+ +H+ +M VRE L F A G+
Sbjct: 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM--------------------- 105
Query: 247 DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
+GQ + +I+++GL +G +S G R+RV +
Sbjct: 106 -------------KGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQA 147
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL--NGTAVIS--LLQPAPETYDLFD 362
L+ L +DE +TGLD + Q+V +R +I + + T ++S ++Q E + D
Sbjct: 148 LIHDPKVLILDEPTTGLDPN---QLV-EIRNVIKNIGKDKTIILSTHIMQ---EVEAICD 200
Query: 363 DIILISEGQIVFQGPREHVLEFFKSMGFE 391
+I+I++G+IV + + K E
Sbjct: 201 RVIIINKGKIVADKKLDELSAANKKQVIE 229
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 7e-10
Identities = 51/269 (18%), Positives = 104/269 (38%), Gaps = 49/269 (18%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP- 193
T+L D++ ++ L L+G GKTTLL A+AG + + L+GR+ ++ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
+R A + Q+ + V + +AF R Q + +++ R DA
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAERVADA----------- 121
Query: 254 MKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA 313
+K++GL + +SGG ++R+ +
Sbjct: 122 ------------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 314 LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373
L +DE + LD++ + + + L ++ + + L D ++ +G++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 374 FQGPREHVLEFFKSMGFECPKRKGVADFL 402
G + + ++ P A+FL
Sbjct: 219 AHGEPQAL--------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 48/209 (22%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE----- 190
+LK +N + + LLG +GK+TLLL L G L P SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 191 FVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
++ + Q D + V + +AF G+ E+ RR ++A
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEA-----EVERRVREA------- 111
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
+ A+ G + +SGG++KRV +
Sbjct: 112 ----LTAVGASGLR-----------------------ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 310 PALALFMDEISTGLDSSTTFQIVTSLRQI 338
L +DE + GLD + Q++ LR++
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILRRL 173
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 8e-10
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 41/205 (20%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 914 SGYCEQNDIHSPNVTVYESL---LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
DI ++ E ++ A+ PP++ FL + E
Sbjct: 64 ------EDI--TDLPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1031 VVCTIHQPSIDIFEAFDELFLMKRG 1055
V+ H + + D + ++ G
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDG 181
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 8e-10
Identities = 68/256 (26%), Positives = 98/256 (38%), Gaps = 54/256 (21%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ-RTAAYISQHDVHIGEM 210
LLGP GKTTLL LAG P SG + +G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDY 270
TV E +AF + + V A IKP
Sbjct: 58 TVEENVAFGLKMRKVPR--------------AEIKPR----------------------- 80
Query: 271 VIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV-GPALALFMDEISTGLDSSTTF 329
V++ L L V + D +SGGQ++RV LV P + L +DE + LD
Sbjct: 81 VLEALRL-VQLEEF-ADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 330 QIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMG 389
Q+ L+ I L G + + E + D I ++ +G+I G E +
Sbjct: 138 QMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI-------- 188
Query: 390 FECPKRKGVADFLQEV 405
+E P VA F+ E+
Sbjct: 189 YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT-GNIKISGYPKKQ--ET 909
LNG+S G ++G +GAGK+TL++ +AG T G I + ++ +
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 910 FARI-----SGYCEQNDIHSPNVTVYESLLYSAWLR-----LPPDVDSETRRMFLEEIME 959
AR+ +G P +T+ E+L A R L ++ R F E +
Sbjct: 82 LARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 960 LVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
L L +GL LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 134 LGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 76/291 (26%)
Query: 115 NLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS 174
NL + + + + + + + DV+ ++ L+G SGK+TL LAG L PS
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344
Query: 175 LKLSGRVTYNGHNMD----EFVPQR-TAAYISQH-----DVHIGEMTVRETLAFSARCQG 224
SG + ++G ++D E R + Q + MTV + LA R G
Sbjct: 345 ---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHG 398
Query: 225 VGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284
GS + RR + V ++L L V
Sbjct: 399 GGSGAE------RRAR------------------------------VAELLEL-VGLPPE 421
Query: 285 VGDEMLRGISGGQRKRVTTGEMLVGPALA-----LFMDEISTGLDSSTTFQIVTSLRQII 339
D +SGGQR+RV + ALA L +DE + LD S Q++ L+ +
Sbjct: 422 FLDRYPHELSGGQRQRVA-----IARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476
Query: 340 HILNGTAV-IS-----LLQPAPETYDLFDDIILISEGQIVFQGPREHVLEF 384
L T + IS + A D + ++ +G+IV +GP E V E
Sbjct: 477 EELGLTYLFISHDLAVVRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 870 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKISGYPKKQETFARISGYCEQNDIHSP 925
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985
++TVY+++ + LR P + + R + E+ EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDAR 1012
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR 912
LL VS PG L+G +GAGK+TL+ +LAG +G + R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 913 ISGYCEQNDIHSPNVTVYESLL--YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
+ GY Q P TV + ++ + L +++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 971 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1012 RA 1013
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 20/193 (10%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ET 909
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-----PDVDSETRRMFLEEIMELVELN 964
FAR Y Q + +TV E + A R P + R +EE + LV L
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREK-VEEAISLVGLK 138
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1023
PL LV LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1024 TVDTGRTVVCTIH 1036
+ + G TV+ +H
Sbjct: 194 SQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYPKKQ--- 907
L ++ G AL+G SGAGKT+L++ L G ++ G++KI+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE--IMELVELNP 965
E++ + + QN P+ T+ +++L PD E + LE + E + L P
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLP 472
Query: 966 LRQSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
GL +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+
Sbjct: 473 Q-----GLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ N +T + HQ ++ +D++++M+ G
Sbjct: 528 L-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 26/208 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L ++ G L ++G SG GKTTL++++AG Y G+I + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974
G QN+ P V +++ + L V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1030
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1031 VVCTIHQPSIDIFEAF---DELFLMKRG 1055
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 63/219 (28%), Positives = 90/219 (41%), Gaps = 32/219 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L V+ PG + AL+G +GAGK+TLM VL+G T G IT I Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT--INNINYNKLDHKLAA 78
Query: 913 ISG----YCEQNDIHSPNVTVYESLLYSAWLRLP-------PDVDSETRRMFLEEIMELV 961
G Y E + I +TV E+L R +D R+ ++ V
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IVM 1018
L V LS ++ L IA L+ + +I MDEPTS L + ++M
Sbjct: 134 GLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057
+R G +V H+ + +I D +MK G
Sbjct: 189 NQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGSS 223
|
Length = 510 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 34/197 (17%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKKQ 907
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 908 ---ETFARISGYCEQNDIHSP---NVTVYESLLYSAWLRLPPDVDSETRRMFLE-EIMEL 960
G Q P + T+ E++ Y P D E + I +
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGK----PDATDEEVEEAAKKANIHDF 121
Query: 961 VELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 122 IMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1020 TVRNTVDTGRTVVCTIH 1036
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQ 907
+L G+ + G + ++G SG+GK+TL+ + G I +K++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ G Q P++TV E++ + P V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK---- 122
Query: 968 QSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ ++
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 1023 NTVDTGRTVVCTIHQ 1037
+ + G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 49/202 (24%)
Query: 125 HILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184
+I S KK IL D++ + + L G +GKTTL LAG + S SG + N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLN 60
Query: 185 GHNMDEFVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
G + +++ Y+ Q D + +VRE L
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------------------ 96
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
+K L ++A V+K L L + +SGGQ++R+
Sbjct: 97 ----------LKELDAGNEQAE----TVLKDLDLYALK-----ERHPLSLSGGQKQRLAI 137
Query: 304 G-EMLVGPALALFMDEISTGLD 324
+L G L L DE ++GLD
Sbjct: 138 AAALLSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 47/193 (24%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-- 191
T+ D++ + + GP +GKTTLL LAG L P +G V + G +
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRE 71
Query: 192 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+ Y+ E+T E L F R G G+ + E
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWE----------------- 113
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
ALA +GL D VG +S GQ++RV + + PA
Sbjct: 114 ----ALAQ---------------VGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPA 149
Query: 312 LALFMDEISTGLD 324
+DE T LD
Sbjct: 150 PLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 63/267 (23%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG--- 185
S +K +LKD+N +KP ++GP +GKTTL+ L DP G++ +G
Sbjct: 11 SYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDI 67
Query: 186 HNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
++ + + Q D + T+ E + +
Sbjct: 68 RDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------R 101
Query: 246 PDPDIDVFMKALATEGQEASVVTDYVIKVL--GLDVCADTMVGDEMLRG--ISGGQRKRV 301
P+ + ++A G I L G DT++G+ G +S G+R+ +
Sbjct: 102 PNATDEEVIEAAKEAG------AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLL 148
Query: 302 TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPE 356
++ L +DE ++ +D+ T I +L +++ T++I S ++ A
Sbjct: 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKNA-- 204
Query: 357 TYDLFDDIILISEGQIVFQGPREHVLE 383
D I+++ +G+I+ +G + +L
Sbjct: 205 -----DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
IL D++ + ++T L+GP GK+TLL A L P SG V + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 195 RTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+ A ++ QH + +TVRE LV R P +
Sbjct: 73 QLARRLALLPQHHLTPEGITVRE-----------------LVAYGR---------SPWLS 106
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
++ + L+ E + ++ ++ AD + D +SGGQR+R +L
Sbjct: 107 LWGR-LSAEDNA---RVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
+ +DE +T LD + +++ +R++ G V+++L + D +++++ G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 372 IVFQGPREHVL 382
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 870 LMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISGYPKKQETFARISGYCEQNDIHSPN 926
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 927 VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986
+TV E++ + +R V + + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 1045
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 1046 F---DELFLMKRGGY-------EIYVGPLGRHSSHLI---SYFEAI 1078
D + +M++G EIY P + I + FEA
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEAT 210
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 26/211 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPKKQETFA 911
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 912 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLR 967
R Y Q P +TV E+LL +I + + EL P+
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGL----------AALPRRSRKIPDEIYELFPVL 121
Query: 968 QSLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+ ++G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 122 KEMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 1027 TGRTVVCTIHQPSIDI-FEAFDELFLMKRGG 1056
G + + Q +D E D ++M+RG
Sbjct: 180 EGGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 11/167 (6%)
Query: 857 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISG---YPKKQETF 910
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 911 A--RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
A R G Q P ++V+++++ A L+L D + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+ P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-----KTGGYIT---GNIKISGYPK-K 906
VS PG + ++G SG+GK+TL+ LAGR T YI +++ + +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 907 QETFARIS-GYCEQNDIH------SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
+ R G+ QN S + E L+ + R ++ T + +LEE
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNI-RATAQDWLEE--- 134
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
VE++P R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 135 -VEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 1020 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+R V D G V+ H + A L +M++G
Sbjct: 190 LLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
R T L +V+ +K + L+GP SGK+TLL A+AG L P+ SG + +G ++
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIA 64
Query: 190 EFVPQ---RTAAYISQ 202
+ + R Y+ Q
Sbjct: 65 KLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
T L+D++ V+ L+GP GK+TLL +AG P+ SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 188 MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 228
+ P Y+ Q D + +TV + +A QGV
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 59/263 (22%), Positives = 106/263 (40%), Gaps = 65/263 (24%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-- 191
+LKDV+ + + ++GP SGK+T+L L D S SG + +G ++ E
Sbjct: 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTL 70
Query: 192 ---------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242
VPQ T + +D T+ + +
Sbjct: 71 DSLRRAIGVVPQDTVLF---ND------TIGYNIRYG----------------------- 98
Query: 243 NIKPDPDIDVFMKALATEGQ--EASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
+PD AT+ + EA+ K++ DT+VG+ L+ +SGG+++R
Sbjct: 99 --RPD----------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK-LSGGEKQR 145
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
V ++ L +DE ++ LD+ T +I + + G I + +
Sbjct: 146 VAIARAILKNPPILLLDEATSALDTHTEREI---QAALRDVSKGRTTIVIAHRLSTIVNA 202
Query: 361 FDDIILISEGQIVFQGPREHVLE 383
D II++ +G+IV +G E +L
Sbjct: 203 -DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP---KKQETF 910
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP----DVDSETRRMFLEEIMELVELNPL 966
+R Q+ S V + + R P D +ET R +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMG---RTPHRSRFDTWTETDRAAVERAMERTGVA-- 130
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 131 --QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
Query: 1027 TGRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1056
G+T V IH +D+ + DEL L+ G
Sbjct: 188 DGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 49/255 (19%)
Query: 844 LQGVLDDK----LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
L V D+K LV LN +S F + ++G SG+GK+TL+ G Y G I+
Sbjct: 27 LYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQ 84
Query: 900 ISG-YPKKQETFARISGYCEQNDIHS--------------PNV-----TVYESLLYSAWL 939
+ Y ++ + I + P T+ + +++
Sbjct: 85 VGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA 144
Query: 940 RLPPDVDSETRRMFLEEIMEL----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995
+++ F M L +E +P GLS Q++R+ IA L
Sbjct: 145 LGVKKSEAKKLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAI 193
Query: 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
P I+ DEPT+GLD + +M+ + + +TV H + E DE+ +M +G
Sbjct: 194 QPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
Query: 1056 G-------YEIYVGP 1063
YEI+
Sbjct: 253 KILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 53/263 (20%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
L+DV+ + L ++LGP GKTTLL +AG + PS G + NG ++ P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGA 74
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMK 255
+ Q++ + + V + +AF + +G+ RRE
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRRE---------------- 111
Query: 256 ALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML-VGPALAL 314
+A + ++ ++GL + + +SGG R+RV L V P L L
Sbjct: 112 -IAHQ----------MLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS--EGQI 372
+DE LD+ T Q+ L + G V+ + E L ++++S G++
Sbjct: 155 LLDEPFGALDALTREQMQELLLDLWQ-ETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 373 VFQGPREHVLEFFKSMGFECPKR 395
V L+F + P R
Sbjct: 214 V----ERLPLDFARRYAAGEPSR 232
|
Length = 259 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-09
Identities = 61/286 (21%), Positives = 100/286 (34%), Gaps = 61/286 (21%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
T L DV+ + + ++G +GK+TLL + P+ SG V +G ++
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLT 71
Query: 190 EF--VPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
R I QH + TV E +AF GV + E
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PKAEIKQR 121
Query: 244 IKPDPDI-DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
+ ++ + KA Q +SGGQ++RV
Sbjct: 122 VAELLELVGLSDKADRYPAQ------------------------------LSGGQKQRVA 151
Query: 303 TGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361
L P + L DE ++ LD TT I+ L+ I L T V+ + +
Sbjct: 152 IARALANNPKI-LLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRIC 209
Query: 362 DDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTS 407
D + ++ +G++V +G V F PK +F+ E
Sbjct: 210 DRVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 5e-09
Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 41/227 (18%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISG---YPKKQ 907
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 908 ETFARISG----YCEQNDIHSPNVT------VYESLLYSAWLRLPPDVDSETRRMFLEEI 957
+ +I G Q+ + S N + E L +++ E
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 958 MELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+EL+EL VG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1010 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
D A ++ ++ + G ++ H + + E D + +M G
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-09
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 26/183 (14%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNIKISGYPKKQETFARISGYCEQN 920
G L L+G +GAGKTTL+ R G I G +K++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 921 DIHSPN--VTVYESLLYS-----AWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
+ + ++V +++ WLR P D R L V L L VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRR----VGLTELADRPVG- 112
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 1034 TIH 1036
T H
Sbjct: 169 TTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 869 ALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS---GYCEQN---DI 922
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 923 HSPNVTVYESLLYSAWLRLPPD--VDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980
SP TV + + + P + +D ET + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFG-----PINLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLS 139
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1039
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199
Query: 1040 IDIFEAFDELFLMKRG 1055
+ + E D +++M +G
Sbjct: 200 L-VPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 55/254 (21%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+ +++ V P + LLGP +GKTT + G L+P+ G +T+NG + + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI 70
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
R Y+ + +MTV + L + A +G+ + + K +
Sbjct: 71 KNRI-GYLPEERGLYPKMTVEDQLKYLAELKGM------------PKAEIQKK----LQA 113
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
+++ L G++ IK L G Q+K ++ P L
Sbjct: 114 WLERLEIVGKKTK-----KIKELS-----------------KGNQQKIQFISAVIHEPEL 151
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVI---SLLQPAPETYDLFDDIILI 367
L +DE +GLD V L+ I L G +I ++ E L D ++++
Sbjct: 152 -LILDEPFSGLDPVN----VELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDRLLML 203
Query: 368 SEGQIVFQGPREHV 381
+GQ V G E +
Sbjct: 204 KKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 54/279 (19%)
Query: 121 LNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS-----L 175
L H+ +R+ + IL+D++ ++P R+T LLG +GK+TLL ALAG L
Sbjct: 2 LTADHLHVARRHR-AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 176 KLSGRVTYNGHNMDEFVPQRTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDML 232
+++G VT NG + R A A + Q + AFSAR + RY
Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH- 111
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
+RR + D ++ +ALA G A ++G DV
Sbjct: 112 ---ARRAGALTHR---DGEIAWQALALAGATA---------LVGRDVTT----------- 145
Query: 293 ISGGQRKRVTTGEML---------VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343
+SGG+ RV +L P L +DE + LD + +++ ++R++ N
Sbjct: 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205
Query: 344 GTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
V++++ D I ++++G IV G VL
Sbjct: 206 -LGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 6e-09
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L G+S + G + ++G SG+GK+TL+ L G G IT + + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
G Q P++TV E++ + P V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 973 LPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
L + LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 1028 GRTVVCTIHQ 1037
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 25/201 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETF---- 910
L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QDLLELEP 71
Query: 911 ---ARISGYCE-QNDIHSPNVTVYESLLYSAW-----LRLPPDVDSETRRMFLEEIMELV 961
AR + Q P V+ E L SA R +D L+ + L+
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLE-FLRSALNARRSARGEEPLDLLDFLKLLKAKLALL 130
Query: 962 ELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
++ L +S+ G S ++KR I + P + +DE SGLD A IV
Sbjct: 131 GMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1020 TVRNTVDTGRTVVCTIHQPSI 1040
+ + R+ + H +
Sbjct: 186 GINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 55/253 (21%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL----DPSLKLSGRVTYN 184
S +K+ +L D+N + P + +L GP SGKTTLL L G L + SLK+ G+ Y
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYG 71
Query: 185 GHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
+ +R YI Q +G +T R+ + + ++ LS +E
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQE----- 117
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM---LRGISGGQRKRV 301
+ A +++ +GL GD + +SGGQ++RV
Sbjct: 118 ---------ARERARA----------MLEAVGL--------GDHLDYYPHNLSGGQKQRV 150
Query: 302 TTGEMLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
LV P L + DE + LDS + +V ++++ G ++ ++ D+
Sbjct: 151 AIARALVHRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDV 207
Query: 361 FDDIILISEGQIV 373
D I+ + +G+++
Sbjct: 208 ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 8e-09
Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 62/260 (23%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
PSR ILK ++ + P + L+G GK+T++ L DP SG + +G +
Sbjct: 11 PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVD 66
Query: 188 MDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
+ + + +SQ + + + T+ E + + G E+ K AN
Sbjct: 67 IRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRY-------GKPDATDEEVEEAAKKAN- 117
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG--ISGGQRKRVT 302
I F+ +L +G Y DT+VG+ RG +SGGQ++R+
Sbjct: 118 -----IHDFIMSLP-DG--------Y-----------DTLVGE---RGSQLSGGQKQRIA 149
Query: 303 TGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPE 356
L+ P + L +DE ++ LD+ + + +L + + T ++ S ++ A
Sbjct: 150 IARALLRNPKI-LLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRNA-- 204
Query: 357 TYDLFDDIILISEGQIVFQG 376
D I ++ GQ+V QG
Sbjct: 205 -----DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 8e-09
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 16/200 (8%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKISGYPKKQET--FARISGYC 917
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 918 EQNDIHSPNVTVYESLLYSAWLRLPPD--VDSETRRMFLEEIMELVELNPLRQSLVGLPG 975
Q P ++E + P + + E E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP- 142
Query: 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 -FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1036 HQPSIDIFEAFDELFLMKRG 1055
H D+ + D ++L+++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 9e-09
Identities = 67/276 (24%), Positives = 108/276 (39%), Gaps = 67/276 (24%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL-SGRVTYNGH 186
+ + ++DV+ V+P + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 187 NMDEFVPQ-------RTAAYISQHDVHI--GEMTVRETLAFSARCQGVGSR---YDMLVE 234
++ + + A I Q + MT+ + + + R G GSR VE
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 235 LSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294
L ++ +GL D D +S
Sbjct: 136 L------------------------------------LEQVGLP---DPERRDRYPHQLS 156
Query: 295 GGQRKRVTTGEMLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353
GG R+RV L P L L DE +T LD +T QI+ L+ + L +
Sbjct: 157 GGMRQRVMIAMALALKPKL-LIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI---- 211
Query: 354 APETYDL------FDDIILISEGQIVFQGPREHVLE 383
T+DL D ++++ +G+IV GP E +L
Sbjct: 212 ---THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 59/268 (22%), Positives = 102/268 (38%), Gaps = 71/268 (26%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAG--KLDPSLKLSGRVTYNGHN--- 187
LKD++ + +T L+GP GK+TLL L L P G V +G +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 188 MDEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
+D V + R + Q ++ + +A+ R G+ + EL R ++A
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKE----ELDERVEEA--- 123
Query: 246 PDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR-----GISGGQRKR 300
++ L DE+ G+SGGQ++R
Sbjct: 124 --------------------------LRKAALW--------DEVKDRLHALGLSGGQQQR 149
Query: 301 VTTGEML-VGPALALFMDEISTGLDSSTTFQI---VTSLRQIIHILNGTAVI---SLLQP 353
+ L P + L +DE ++ LD +T +I + L++ T VI ++ Q
Sbjct: 150 LCLARALANEPEV-LLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQA 203
Query: 354 APETYDLFDDIILISEGQIVFQGPREHV 381
A + D + G++V GP E +
Sbjct: 204 A----RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 63/256 (24%), Positives = 96/256 (37%), Gaps = 48/256 (18%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
R K IL D++ V P ++GP +GKTTLL L G+ PS SG VT G
Sbjct: 40 RRNGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRF 95
Query: 189 D----EFVPQRTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKD 241
F ++ +S + E TVR+ + S +G Y +
Sbjct: 96 GKGETIFELRKRIGLVSSELHERFRVRE-TVRDVVL-SGFFASIG-IYQEDLTAEDLAAA 152
Query: 242 ANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRV 301
+ + K LA D +S G+++RV
Sbjct: 153 QWL----LELLGAKHLA----------------------------DRPFGSLSQGEQRRV 180
Query: 302 TTGEMLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
LV P L L +DE + GLD Q++ L ++ A++ + A E
Sbjct: 181 LIARALVKDPEL-LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239
Query: 361 FDDIILISEGQIVFQG 376
F +L+ EG++V QG
Sbjct: 240 FTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY------P 904
K+ L VS + G + ++G SGAGK+TL+ + G + +G++ + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 905 KKQETFARISGYCEQ--NDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE 962
K+ R G Q N + S TV+E++ P ++ + E ++EL+E
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 963 LNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
L VGL + LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 127 L-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 1018 MRTVRNT-VDTGRTVVCTIHQ 1037
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 48/226 (21%)
Query: 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS-- 914
VS PG + ++G SG+GKTTL++ L+ R G + + +S
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALSEA 81
Query: 915 ----------GYCEQN--DIHSPNVT----VYESLLYSAW-----LRLPPDVDSETRRMF 953
G+ Q+ D V+ + E L+ +R T +
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-------ATAGDW 134
Query: 954 LEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
LE VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD
Sbjct: 135 LER----VEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 1014 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1055
A ++ +R V + G VV H D+ A L +MK+G
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY---PKKQET 909
+LNG+S G A++G SGAGK+T++ +L +G+I I G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLE--EIMELVELNP-L 966
R G Q D N T+ ++ Y PD +E E +I + ++ P
Sbjct: 335 LRRAIGIVPQ-DTVLFNDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLPEG 388
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R V
Sbjct: 389 YDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VS 446
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHL 1071
GRT + H+ S I +A DE+ ++ G + G H L
Sbjct: 447 AGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-08
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
T+L D++ ++ + +LGP +GK+TLL LAG L PS SG + +G ++ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 195 ---RTAAYISQ 202
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 45/251 (17%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN---M 188
K +LKD++ ++P ++GP SGK+TL+ L DP+ SG + +G + +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
++ +SQ D + T+RE +A G E+ K AN
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAH--- 445
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+ L DT+VG E +SGGQR+R+ L+
Sbjct: 446 --EFIAN---------------------LPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368
L +DE ++ LD+ T I +L++++ T +I + + T D II++
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLD 537
Query: 369 EGQIVFQGPRE 379
G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 27/225 (12%)
Query: 840 QEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 899
M+L V + L +SG R G + L+G +GAGK+TL+ +AG +G +G+I+
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 900 ISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE 956
+G P + AR Y Q +P W L +TR L +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLND 108
Query: 957 IMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1010
+ + L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ + R + G +V + H + + A +L+KRG
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNIKISGYPKK 906
L ++ +TAL+G SG GK+TL+ D++ G + G + I
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 907 QETFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
R G Q PN +++Y+++ Y RL D + L+EI+E
Sbjct: 77 VVELRRRVGMVFQK----PNPFPMSIYDNIAYG--PRLHGIKD----KKELDEIVE---- 122
Query: 964 NPLRQSL--VGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+SL L V GLS Q++RL IA L P ++ +DEPTS LD
Sbjct: 123 ----ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178
Query: 1013 AAA 1015
A
Sbjct: 179 ATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP-------KK 906
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
E + G+ Q P+ T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 56/258 (21%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+L DV+ + +T ++GP +GK+T LL++ +L K SG +T +G + +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 195 RTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
A +S Q + +TVR+ + F R+ P
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF--------GRF----------------P----- 102
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
+ + T+ E + + I+ L L + D L +SGGQR+R +L
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRAFIAMVLAQDT 154
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL------FDDII 365
+ +DE LD + QI+ LR++ L T V+ L +D+ D I+
Sbjct: 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDHIV 207
Query: 366 LISEGQIVFQGPREHVLE 383
+ G++V QG + +++
Sbjct: 208 ALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-08
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 915 GYCEQ--NDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE--IMELVELNPLR-QS 969
D+ N T+ ++ Y D L + V+ PL +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--- 1026
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 462 PIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLM 516
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
GRT + H+ S E D + +M G
Sbjct: 517 QGRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 62/270 (22%), Positives = 104/270 (38%), Gaps = 63/270 (23%)
Query: 126 ILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185
+ K T LKDV+ V + ++G +GK+TL+ + G P+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDG 66
Query: 186 HNMDEFVP------QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 239
++ +R I QH + TV E +A GV + E
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV----------PKAE 116
Query: 240 KDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRK 299
+ + +++++GL+ AD +SGGQ++
Sbjct: 117 IEERVLE------------------------LLELVGLEDKADAYPAQ-----LSGGQKQ 147
Query: 300 RVTTGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358
RV L P + L DE ++ LD TT I+ LR I L T V+ T+
Sbjct: 148 RVGIARALANNPKV-LLCDEATSALDPETTQSILALLRDINRELGLTIVLI-------TH 199
Query: 359 ------DLFDDIILISEGQIVFQGPREHVL 382
+ D + ++ +G++V +G E V
Sbjct: 200 EMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 46/187 (24%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 914 SG--YCEQNDIHS--------------------PNVTVYESLLYSAWLRLPPDVDSETRR 951
SG Y + DI PN++++E++ L+L V S ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKS--KK 117
Query: 952 MFLEEIMELVELNPLRQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
E + +E L + + P LS Q++RL IA L P ++ DEPT+
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 1009 LDARAAA 1015
LD A
Sbjct: 177 LDPENTA 183
|
Length = 250 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISG---YP 904
L G+S + A +G SG GK+T + D++ + + G I+I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 905 KKQET--FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE 962
K + + G Q P +++E++ Y LR+ D+ R +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 963 L-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-08
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ---ET 909
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL------ 963
R GY Q D T+ +++ A P D E EI+ EL
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDE-------EILRAAELAGVTEF 583
Query: 964 -NPLRQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 1020 TVRNTVDTGRTVVCTIHQPSI 1040
++ + G+T+V H+ S+
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 64/271 (23%), Positives = 103/271 (38%), Gaps = 54/271 (19%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
F L V+ +K LLGP GKTTLL +AG P+ SG + +G ++ P
Sbjct: 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPP 69
Query: 194 -QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+R + Q+ +TV E +AF R + + E+ R +A
Sbjct: 70 HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKA-----EIKERVAEA---------- 114
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
+ + EG + +SGGQ++RV LV
Sbjct: 115 -LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPK 150
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
L +DE LD + L+++ L G + + E + D I ++++G+I
Sbjct: 151 VLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKGKI 209
Query: 373 VFQG-PREHVLEFFKSMGFECPKRKGVADFL 402
G P E +E P + VADF+
Sbjct: 210 QQIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 4e-08
Identities = 73/302 (24%), Positives = 114/302 (37%), Gaps = 102/302 (33%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLL--LALAGKLDPSLKLSGRVTYNGHNMD 189
LKD+N + +++T L+GP GK+TLL L L P ++ G V +G N+
Sbjct: 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI- 76
Query: 190 EFVPQRTAAYISQHDV-----HIG---------EMTVRETLAFSARCQGV-GSRYDMLVE 234
Y + DV +G M++ + +A+ R G+ D +VE
Sbjct: 77 ---------YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVE 127
Query: 235 LSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294
K A AL E V D L A G+S
Sbjct: 128 --SSLKKA-------------ALWDE------VKDR------LHKSA---------LGLS 151
Query: 295 GGQRKRVTTGEMLVGPALA-----LFMDEISTGLDSSTTFQI---VTSLRQ----II--H 340
GGQ++R+ + ALA L MDE ++ LD +T +I +T L++ +I H
Sbjct: 152 GGQQQRLC-----IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206
Query: 341 ILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVAD 400
+ A +S D G++V GP + + F PK K D
Sbjct: 207 NMQQAARVS------------DYTAFFYLGELVEFGPTDKI--------FTNPKHKRTED 246
Query: 401 FL 402
++
Sbjct: 247 YI 248
|
Length = 253 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 69/225 (30%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L + + VL + GVSG+GK+TL+ G Y +G ++ + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK-------- 56
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN----PLRQSL 970
S N + F++++ L+++ L Q L
Sbjct: 57 --------FSRNKLI-----------------------FIDQLQFLIDVGLGYLTLGQKL 85
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP-LGRHSSHLI 1072
TV+ H + + + I GP G+ ++
Sbjct: 140 NTVILIEHNLDV-----------LSSADWIIDFGPGSGKSGGKVV 173
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR--ISGYCE 918
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 919 QNDIHSPNVTVYES--LLYSAWLRLPPD----VDSETRRMFLEEIMELVELNPLRQSLVG 972
+N++ ++TV ++ L S L+L + ++ R+ L + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1029
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1030 TVVCTIHQPSIDIFEAFDELFLMKRG 1055
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 5e-08
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
LL +S G L L G +GAGKTTL+ ++AG G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 914 SGYC---EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
C ++ I +P +T+ E+ LY D+ + + E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1031 VVCTIHQ 1037
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 45/250 (18%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-- 193
IL +++ +KP + ++G SGK+TL + P +GRV +GH++ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73
Query: 194 -QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+R + Q +V L S R+ A P ++
Sbjct: 74 LRRQVGVVLQENV--------------------------LFNRSIRDNIALADPGMSMER 107
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
++A G D++ + L DT+VG E G+SGGQR+R+ L+
Sbjct: 108 VIEAAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPR 158
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
L DE ++ LD + I+ ++ I G VI ++ T D II++ +G+I
Sbjct: 159 ILIFDEATSALDYESEHAIMRNMHD---ICAGRTVI-IIAHRLSTVKNADRIIVMEKGRI 214
Query: 373 VFQGPREHVL 382
V QG + +L
Sbjct: 215 VEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-08
Identities = 75/324 (23%), Positives = 120/324 (37%), Gaps = 79/324 (24%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP- 193
++ +++ + LLGP GKTT+L +AG P SGR+ +G ++
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
R + Q MTV E +AF R Q + E++ R +A
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA----------- 128
Query: 254 MKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA 313
++++ L+ A +SGGQ++RV +V
Sbjct: 129 ------------------LRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKV 165
Query: 314 LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD------LFDDIILI 367
L +DE + LD Q+ L+ + L T V T+D + D I+++
Sbjct: 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFV-------THDQEEALTMSDRIVVM 218
Query: 368 SEGQIVFQG-PREHVLEFFKSMGFECPKRKGVADFLQE-------VTSKKDQQQYWVRKE 419
+G+I G PRE +E PK VA F+ E V + D+Q+ E
Sbjct: 219 RDGRIEQDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVE 269
Query: 420 EPYRFVTVKEFSDAFQAFHVGQKL 443
+ V A GQKL
Sbjct: 270 GRECNIYVN------FAVEPGQKL 287
|
Length = 375 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 37/218 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NIKISGYPKK 906
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
+E + G Q P++T+ ++ L + R+ E+ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 967 RQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1022 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETF 910
L+ VS + G + AL+G +G+GK+TL+ +AG + T G I + K +E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELR 72
Query: 911 ARISGYCEQ 919
RI GY Q
Sbjct: 73 RRI-GYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 60/223 (26%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+L+D+N V+ +LGP GK+TLL +AG P+ SG V +G +
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPG 71
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
P Y+ Q D + +TV + +A +G S+ E K
Sbjct: 72 PDI--GYVFQEDALLPWLTVLDNVALGLELRGK----------SKAEARERAK------- 112
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG--------ISGGQRKRVTTG 304
+ L +VG L G +SGG R+RV
Sbjct: 113 --ELLE-------------------------LVG---LAGFEDKYPHQLSGGMRQRVAIA 142
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAV 347
L L +DE LD+ T ++ L ++ T +
Sbjct: 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 53/223 (23%)
Query: 124 LHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRV 181
L + ++KK L V+ P+ +T L+GP SGK+TLL ++ L+P + ++G +
Sbjct: 11 LSVYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 182 TYNGHNMDEFVPQRTAAYISQHDVHIG---------EMTVRETLAFSARCQGVGSRYDML 232
YNGHN+ + P+ + + IG M++ E + + R +G+
Sbjct: 68 VYNGHNI--YSPRTDTVDLRK---EIGMVFQQPNPFPMSIYENVVYGLRLKGI------- 115
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
D V +A+ + AS+ + +K D D+ + G
Sbjct: 116 ---------------KDKQVLDEAVEKSLKGASIWDE--VK----DRLHDSAL------G 148
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL 335
+SGGQ++RV +L + +DE ++ LD + +I +L
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL 191
|
Length = 252 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 54/189 (28%), Positives = 78/189 (41%), Gaps = 22/189 (11%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIK-ISGYPKKQETFARISG 915
+S R G + L+G +GAGK+TL+ +AG G G I + + + AR
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWS--AAELARHRA 72
Query: 916 YCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG 975
Y Q + V++ L L P +E L E+ E + L +G
Sbjct: 73 YLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGL----DDKLGRS- 123
Query: 976 VSGLS-TE-QRKRLTIAVELVANPSI------IFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
V+ LS E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 124 VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 1028 GRTVVCTIH 1036
G VV + H
Sbjct: 183 GIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-07
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK----QETF 910
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLP---PDVDSETRRMFLEEIMELVELNPLR 967
Q P ++V E++ + LP ++ R + ++ ++L+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA--KNLLRELQLDADN 134
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
+ V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 135 VTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L G+S + G TAL+G +GAGK+TL+ L G G +K+ G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 915 ---GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFL--EEIMELVELNPLRQS 969
G Q+ P+ V+ S + W DV M L +E+ VE L+
Sbjct: 79 SKVGLVFQD----PDDQVFSS---TVW----DDVAFGPVNMGLDKDEVERRVE-EALK-- 124
Query: 970 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
V + LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 125 AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184
Query: 1025 VDTGRTVVCTIH 1036
+ G+TV+ H
Sbjct: 185 HNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 60/296 (20%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF---- 191
L D++ + T L+G SGK+T+ + G L P + ++T +G +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 192 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+ ++ D TV + +AF + V R +M I
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEM------------------IK 122
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT-TGEMLVGP 310
+ LA G + DY+ D +SGGQ++RV G + V P
Sbjct: 123 IVRDVLADVG-----MLDYI---------------DSEPANLSGGQKQRVAIAGILAVEP 162
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370
+ + +DE ++ LD + QI+ +R+ + N VIS+ E ++ D ++++ +G
Sbjct: 163 KI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDDG 219
Query: 371 QIVFQG-PRE--HVLEFFKSMGFECP---------KRKGVADFLQEVTSKKDQQQY 414
+++ QG P E +E K +G + P K KG++ QE+ +++ QY
Sbjct: 220 KLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 908 ETFARISGYCEQNDIHSPNVTV-YESLLYSAWLRLPPDVDSETRRMFLEEIMELV----- 961
IS Y E +HS V E +L++ L+ ++ + E + E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHA 129
Query: 962 -----ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1017 VMRTVRNTVDTGRTVVCTIHQ 1037
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYP------KK 906
LN VS + + G AL+G SG GK+TL +L G + GN+ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ----GNVSWRGEPLAKLNRAQ 83
Query: 907 QETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN 964
++ F R Q+ I + P TV E + LR +D R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR 912
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
+ Q + P T+ E+L Y PD L ++ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 973 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1032 VCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP------KKQ 907
+L VS + G L+G SG GK+TL +L G + G + G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 908 ETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
F R Q+ + P +TV + + LR +D ++ + E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 48/197 (24%), Positives = 66/197 (33%), Gaps = 50/197 (25%)
Query: 154 GPPASGKTTLLLALAGKLDPSLKLSGRVTYNG--HNMDEFVPQRTAAYISQHDVHIGEMT 211
GP GKTTLL LAG L P SG V +NG P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYV 271
E L F A G + ALA
Sbjct: 90 ALENLHFWAAIHG----------------------GAQRTIE-DALAA------------ 114
Query: 272 IKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQI 331
+GL D +S GQ++R+ + + A +DE +T LD + +
Sbjct: 115 ---VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 332 VTSLRQIIHILNGTAVI 348
LR H+ G V+
Sbjct: 167 AGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 47/195 (24%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-- 193
+L +VN + + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFS--ARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
QR + Q + ++V + L F+ A +G R L R D DP
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT- 134
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
+SGGQR RV L+
Sbjct: 135 -----------------------------------------LSGGQRARVALLRALLAQP 153
Query: 312 LALFMDEISTGLDSS 326
AL +DE + LD +
Sbjct: 154 KALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 44/215 (20%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFA 911
L ++ G L A++G G+GK++L+ L G K G ++ I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 912 RISGYCEQNDIHSP---NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LR 967
Y Q P N T+ E++L+ D E E++++ L P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 968 ------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1020
+ +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-07
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 862 FRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPKKQETFARISGYCE 918
F +TA +G +GAGKTT + +L G +G + G I + + G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE---TNLDAVRQSLGMCP 1009
Query: 919 QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978
Q++I ++TV E +L+ A L+ E ++ +E ++E L+ R
Sbjct: 1010 QHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE-----EAQD 1061
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCTI 1035
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMST 1117
Query: 1036 HQ 1037
H
Sbjct: 1118 HH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 46/266 (17%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNM-----D 189
+K+VN V+ + L+GP GKTT L A+ L P +++GR+ +G ++ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 190 EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
+R + Q M+V + + + G+ R D L+E++ R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-E 137
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
+ +K AT G+SGGQ++R+ L
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 310 PALALFMDEISTGLDSSTTFQI---VTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366
L MDE ++ LD ++T +I +T L+++ I+ T + +T F L
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
Query: 367 ISEGQI--VFQGPREHVLEFFKSMGF 390
+ G +F PR+ E + S F
Sbjct: 226 VEHGPTDQLFTNPRDERTEAYVSGRF 251
|
Length = 252 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 70/302 (23%), Positives = 120/302 (39%), Gaps = 103/302 (34%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNMDE 190
+ LK++N + +++T L+GP GK+TLL +L L P +++ G+V ++G ++
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI-- 70
Query: 191 FVPQRTAAYISQHDV-----HIG---------EMTVRETLAFSARCQGVGSR--YDMLVE 234
Y + DV +G M++ + +A+ R G+ + D +VE
Sbjct: 71 --------YDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVE 122
Query: 235 LSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294
S ++ AL E V D L A G+S
Sbjct: 123 ESLKK---------------AALWDE------VKD------RLHDSA---------LGLS 146
Query: 295 GGQRKRVTTGEMLVGPALA-----LFMDEISTGLDSSTTFQI---VTSLRQ----II--H 340
GGQ++R+ + ALA L +DE ++ LD T +I + L++ +I H
Sbjct: 147 GGQQQRLC-----IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201
Query: 341 ILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVAD 400
+ A IS D +G++V GP E + F PK K D
Sbjct: 202 NMQQAARIS------------DRTAFFYDGELVEYGPTEQI--------FTNPKEKRTED 241
Query: 401 FL 402
++
Sbjct: 242 YI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L GV+ + G +L+G SG GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974
+ QN P +TV E+ + A R+ PD+ RR +EE + LV L ++ P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1033
G LS ++R+ IA L P ++ +DEP LDA + + + TV+
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1034 TIHQPSIDIFEAFDELFLMKR 1054
H D+ EA L L R
Sbjct: 171 VTH----DVDEA---LLLSDR 184
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 54/262 (20%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF---V 192
IL D++ +K + T ++G SGK+TL L G SG + NG ++ +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
++ Y+ Q + +I ++ E L A+ D + A IK D I+
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACEI---AEIKDD--IEN 596
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
TE E ISGGQ++R+ L+ +
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIH---ILNGTAVISLLQPAPETYDLFDDIILISE 369
L +DE ++ LD+ T +IV +L + I V L A ++ D II++
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLNLQDKTIIF----VAHRLSVAKQS----DKIIVLDH 683
Query: 370 GQIVFQGPREHVLE---FFKSM 388
G+I+ QG + +L+ F+ S+
Sbjct: 684 GKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 24/190 (12%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-KISGYPKKQETFARISGYCEQN- 920
R G + L+G +G GK+T + +LAG+ + N+ K P E G QN
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNLGKFDDPPDWDEILDEFRGSELQNY 78
Query: 921 --DIHSPNVTVYESLLYSAWLRLPPDVDSETR--------RMFLEEIMELVELNPLRQSL 970
+ +V V Y +P V + R L+E+++ +EL +
Sbjct: 79 FTKLLEGDVKVIVKPQYVD--LIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR- 135
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 ----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY 191
Query: 1031 VVCTIHQPSI 1040
V+ H ++
Sbjct: 192 VLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 49/253 (19%)
Query: 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887
F+DV +S D QGV D VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVED--------VSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 888 RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLY----SAWLRL-P 942
++ +G I I G I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 943 PDVDSETRRMFLE--EIMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 999
PD E R E + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1000 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-------IDIFEA------- 1045
+ +DE TS LD A V + + + GRT H+ S I +F+
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 1046 -FDELFLMKRGGY 1057
FDE L+ RGG
Sbjct: 552 SFDE--LVARGGR 562
|
Length = 588 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 53/183 (28%), Positives = 75/183 (40%), Gaps = 40/183 (21%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNIKISGYPKK 906
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 907 QETFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
R G Q PN ++YE++ Y P + E + L+ I+E
Sbjct: 82 VVALRRKIGMVFQR----PNPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE---- 127
Query: 964 NPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+SL G LS Q++RL IA L NP +I MDEP S LD
Sbjct: 128 ----KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
Query: 1013 AAA 1015
A A
Sbjct: 184 ATA 186
|
Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 27/215 (12%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKISGYPKKQ-- 907
V +N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
E + Q+ P+ TV E++ + ++ V R E +ELV L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWE 154
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 1023
LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
+T+V H D+ EA D + +MK G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 64/260 (24%), Positives = 100/260 (38%), Gaps = 67/260 (25%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
IL+ V+ V +T +LG GKTTLL L G L SG + +G ++ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 195 RTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI 250
A AY+ Q +TV E L SR K +I
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSR----------------KIPDEI 114
Query: 251 -DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML--RG--ISGGQRKRVTTGE 305
++F VL EML RG +SGGQ++++
Sbjct: 115 YELF-------------------PVL-----------KEMLGRRGGDLSGGQQQQLAIAR 144
Query: 306 MLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILN---GTAVISLLQPAPETYDLF 361
LV P L L +DE + G+ S I+ + ++I L G A++ + Q +L
Sbjct: 145 ALVTRPKL-LLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMAILLVEQYLDFARELA 199
Query: 362 DDIILISEGQIVFQGPREHV 381
D ++ G++V G + +
Sbjct: 200 DRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 54/251 (21%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-KISGYPKKQETFARISGYCEQND 921
RPG + ++G +G GK+T + +LAG + N+ + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN- 151
Query: 922 IHSPNVTVYESLLYSAWLR----------LPPDVDSETRRM--------FLEEIMELVEL 963
Y LY LR +P V + + +E++E + L
Sbjct: 152 --------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL 203
Query: 964 NPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
+ R VS LS + +R+ IA L+ + + F DEP+S LD R R +
Sbjct: 204 ENVLDRD-------VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 1022 RNTVDTGRTVVCTIHQPSI-DIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPG 1080
R + G+ V+ H ++ D F + + G Y + P G
Sbjct: 257 RELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRV-----------G 305
Query: 1081 VNKIKDGYNPA 1091
+N+ GY P
Sbjct: 306 INEYLKGYLPE 316
|
Length = 591 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQ--ET 909
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
+ Q+ P+ TV E++ + ++ V R E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK 160
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 60/188 (31%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKKQ 907
L ++ +TAL+G SG GK+T + D++ K I G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 908 ETFARISGYCEQNDI-----------HSPN---VTVYESLLYSAWLRLPPDVDSETRRMF 953
+ Y D+ PN +++Y+++ Y P +
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 954 LEEIMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002
L+EI+E L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1003 DEPTSGLD 1010
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 915 GYCEQND---IHS-----PNVTVYESL-LYSAWLRLP-PDVDSETRRMFLEEIMELVEL- 963
E+ IH ++V E++ L + D D+ R ++++ ++L
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA--QKLLAQLKLD 134
Query: 964 -NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
NP P V L Q++ + IA L ++ +DEPT+ L A+++ +R
Sbjct: 135 INP------ATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIR 187
Query: 1023 N 1023
+
Sbjct: 188 D 188
|
Length = 506 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-07
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 67/257 (26%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
++++ + ++P + L+G SGK+T+ +AG P SG + ++G +E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 196 TAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYDMLV---ELSRREKDANIKPDPDI 250
A ++ D+ + E TVR+ L +D + +L R KDA I
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTL----------WDPTIPDADLVRACKDAAIH----- 595
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG- 309
DV + G + + E +SGGQR+R+ LV
Sbjct: 596 DVIT---SRPGGYDAELA-------------------EGGANLSGGQRQRLEIARALVRN 633
Query: 310 PALALFMDEISTGLDSSTTFQIVTSLRQ-------IIHILNGTAVISLLQPAPETYDLFD 362
P++ L +DE ++ LD T I +LR+ + H L S ++ D
Sbjct: 634 PSI-LILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRL------STIRDC-------D 679
Query: 363 DIILISEGQIVFQGPRE 379
+II++ G++V +G E
Sbjct: 680 EIIVLERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 47/240 (19%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
L+D+N ++ L ++LGP GKTTLL +AG + G +T +G ++ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMK 255
+ Q++ + V++ +AF + GV +R + A +
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM--------QRLEIA-----------HQ 111
Query: 256 ALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALF 315
L G E + + +SGGQR+RV L L
Sbjct: 112 MLKKVGLEGA--------------------EKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 316 MDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS--EGQIV 373
+DE LD+ T Q+ T L ++ G V+ + E + +++L+S G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNIKISGYP 904
+L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++ ++G P
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 24/187 (12%)
Query: 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR--ISGYCE 918
G + A++G SGAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 919 QNDIHSPNVTVYES--LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGV 976
+N++ + ++TV ++ L S L+L + +R +E V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGF---LKRLPGE 129
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1032
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1033 CTIHQPS 1039
H P
Sbjct: 185 MVTHHPE 191
|
Length = 231 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 33/218 (15%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNIKISGYPKKQET 909
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ + +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 910 FARISGYCEQNDIHS-----PNVTVYESLLY-----SAWLRLPPDVDSETRRMFLEEIME 959
A I IH P +T+ E++ + + R+ + ++M+ E
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L LN LR S L V LS +++ + IA L +I MDEPT L + R
Sbjct: 126 LARLN-LRFSSDKL--VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057
+R GR +V H+ +IFE D++ + + G +
Sbjct: 183 VIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQF 219
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-07
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 36/217 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 913 ISGYCEQNDI---HSP-NVTVYESLLYSAWL-RLP---PDVD-----SETRRMFLEEIME 959
S +N I H N+ + S++ + WL R P VD +T+ +F E
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF----DE 121
Query: 960 L-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
L ++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 122 LDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+R + G +V H+ +IF+ DE+ +++ G
Sbjct: 175 TIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 289 MLRGISGGQRKRVTTGEMLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAV 347
+ +SGGQR+RV L+ P L L +DE ++GLD ++ +++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 348 ISLLQPAPETYDLFDDIILISEGQ 371
I + D +I++ +G+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 59/273 (21%), Positives = 96/273 (35%), Gaps = 62/273 (22%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS---LKLSGRVTYN 184
K F L +V+ ++ ++G SGK+TL LAG PS + L G+
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAP 73
Query: 185 GHNMDEFVPQRTAAYISQH---DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKD 241
F R + Q ++ TV L+ R G+ +++
Sbjct: 74 KKRAKAF--YRPVQMVFQDPYSSLN-PRRTVGRILSEPLRPHGLSKS---------QQRI 121
Query: 242 ANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRV 301
A + L G S + ++ SGGQR+R+
Sbjct: 122 A------------ELLDQVGLPPSFLDRRPHEL-------------------SGGQRQRI 150
Query: 302 TTGEML-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAV-----ISLLQPAP 355
L P L L +DE ++ LD S QI+ L ++ T + ++L+
Sbjct: 151 AIARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV---- 205
Query: 356 ETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
+ D I ++ GQIV GP E +L
Sbjct: 206 --EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 14/175 (8%)
Query: 870 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-IKISGYPKKQETFA--RISGYCEQNDI 922
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982
P++TV E+L+ + P V ++ L +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 58/251 (23%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE----- 190
+LK +N S +T L+G GK+TL + L+G L P G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 191 -FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
+ Q+ A + I + +AFS R GV E++RR +A
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEA-----EITRRVDEA------- 120
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
L + + ++ +S GQ+KRV LV
Sbjct: 121 ---------------------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 310 PALALFMDEISTGLDSSTTFQIVTSLRQII----HILNGTAVISLLQPAPETYDLFDDII 365
A L +DE + GLD + Q++ +R+I+ H++ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 366 LISEGQIVFQG 376
++ +GQI+ G
Sbjct: 208 VLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 46/199 (23%), Positives = 67/199 (33%), Gaps = 52/199 (26%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP--QRTAAYISQHDVHIGE 209
+ GP SGKTTLL LAG P L+GRV NG +D R Y+
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPP---LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTT 87
Query: 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTD 269
++V E L F D + +ALA G
Sbjct: 88 LSVLENLRFWH-------------------------ADHSDEQVEEALARVGLNG----- 117
Query: 270 YVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTF 329
D + +S GQ++RV +L+ +DE +T LD +
Sbjct: 118 ---------------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA 162
Query: 330 QIVTSLRQIIHILNGTAVI 348
+ ++ H G V+
Sbjct: 163 RFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 37/248 (14%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
T+L V+ V+ L L+GP +GKTTLL A+ G L P+ +G V G + V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAG----DDVEA 69
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
+A S+ + + T +L+F + V VE+ R P F
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRT---------PHRSRF- 109
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALAL 314
TE A+V + ++ G+ AD V +SGG+R+RV L L
Sbjct: 110 -DTWTETDRAAV--ERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVL 161
Query: 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374
+DE + LD + + + +R+++ +G ++ + D+++L+++G++
Sbjct: 162 LLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219
Query: 375 QGPREHVL 382
GP VL
Sbjct: 220 AGPPADVL 227
|
Length = 402 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISG---YPKKQE 908
L G+ F +TAL+G SG GK+T + L G ITGN+ + G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 909 T--FARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
+ G Q PN ++YE+++Y LRL D L+E +E
Sbjct: 81 VVQLRKQVGMVFQQ----PNPFPFSIYENVIYG--LRLAGVKDKAV----LDEAVE---- 126
Query: 964 NPLRQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L+Q+ + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 127 TSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 7e-07
Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 52/250 (20%)
Query: 823 EPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 882
+ +SLT +V ++ D +L G+S + G AL+G +G GK+TL+
Sbjct: 335 DQVSLTLNNVSFTYP-----------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 883 DVLAGRKTGGY--ITGNIKISGYPKKQETFARISGYCEQN----------DIHSPNVTVY 930
+L T + G I ++G P I+ Y E +H + T+
Sbjct: 384 QLL----TRAWDPQQGEILLNGQP--------IADYSEAALRQAISVVSQRVHLFSATLR 431
Query: 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP---GVSG--LSTEQRK 985
++LL +A P+ E L E+++ V L L + GL G G LS +++
Sbjct: 432 DNLLLAA-----PNASDEA----LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQR 482
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1045
RL IA L+ + ++ +DEPT GLDA ++ + +TV+ H+ + E
Sbjct: 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHR--LTGLEQ 539
Query: 1046 FDELFLMKRG 1055
FD + +M G
Sbjct: 540 FDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 7e-07
Identities = 63/261 (24%), Positives = 98/261 (37%), Gaps = 80/261 (30%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF---- 191
+LK ++ +K LLG GK+TLL L DP G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAA 411
Query: 192 -------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
V QR VH+ T+R+ L +
Sbjct: 412 LRQAISVVSQR---------VHLFSATLRDNLLLA------------------------- 437
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
P+ + ++ L G E + D GL + +G E R +SGG+++R+
Sbjct: 438 APNASDEALIEVLQQVGLEKLLEDD-----KGL----NAWLG-EGGRQLSGGEQRRLGIA 487
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQ---------IIHILNGTAVISLLQPAP 355
L+ A L +DE + GLD+ T QI+ L + I H L G
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGL---------- 537
Query: 356 ETYDLFDDIILISEGQIVFQG 376
+ FD I ++ GQI+ QG
Sbjct: 538 ---EQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 41/200 (20%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNIKISGYPKKQ--E 908
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRL---PPDVDSETRRMFLEEIMELVELNP 965
+ I Q + +L+S +R P S+ EE+ + +E
Sbjct: 79 RISIIP----Q-----------DPVLFSGTIRSNLDPFGEYSD------EELWQALERVG 117
Query: 966 LRQSLVGLPGV---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
L++ + LPG LS QR+ L +A L+ I+ +DE T+ +D A+
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 1017 VMRTVRNTVDTGRTVVCTIH 1036
+ +T+R TV+ H
Sbjct: 178 IQKTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 56/215 (26%), Positives = 81/215 (37%), Gaps = 55/215 (25%)
Query: 127 LPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG- 185
+ + + +ILK V +VK ++GP SGK+TLL LAG DPS SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 186 --HNMDE----FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 239
H +DE + R ++ Q I +T E +A +G S
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD---------- 122
Query: 240 KDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML---RGISGG 296
+A A EA +GL G + +SGG
Sbjct: 123 --------------SRAGAKALLEA----------VGL--------GKRLTHYPAQLSGG 150
Query: 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQI 331
+++RV G LF DE + LD +T +I
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
|
Length = 228 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 34/198 (17%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQETF 910
+LN +S + R G A+ G SG GK+TL+ ++A T G + + +S K E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--KPEAY 75
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
+ YC Q + TV ++L++ +R R L+ +
Sbjct: 76 RQQVSYCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAALDLLAR----------- 119
Query: 971 VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRT 1020
LP ++ LS +++R+ + L P I+ +DE TS LD ++ R
Sbjct: 120 FALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179
Query: 1021 VRNTVDTGRTVVCTIHQP 1038
VR + V+ H
Sbjct: 180 VR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 57/223 (25%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
L +N + L+GP +GK+TLL + + P+ SG + NG ++ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 197 AAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP 246
Y+ + IG + V E +AF+ GV R E+ +R A
Sbjct: 73 IPYLRR---KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA---- 120
Query: 247 DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
++++GL + +SGG+++RV
Sbjct: 121 -------------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARA 150
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVIS 349
+V L DE + LD TT++I+ L++ I+ T V++
Sbjct: 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 9e-07
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 52/259 (20%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191
KK ++ DV+ V + LLGP +GKTT + G + P SG++ + ++ +
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKL 71
Query: 192 VPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+ A Y+ Q ++TV + + M V L REKD
Sbjct: 72 PMHKRARLGIGYLPQEASIFRKLTVEDNI--------------MAV-LEIREKD------ 110
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
+ E D +++ + D+ +SGG+R+RV L
Sbjct: 111 -----------LKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARAL 154
Query: 308 -VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL--NGTAVISLLQPAPETYDLFDDI 364
P L DE G+D I ++II L G V+ ET D+ D
Sbjct: 155 AANPKFILL-DEPFAGVDPIAVIDI----QRIIKHLKDRGIGVLITDHNVRETLDICDRA 209
Query: 365 ILISEGQIVFQGPREHVLE 383
+IS+G+++ +G E ++
Sbjct: 210 YIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 49/190 (25%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISG---YP 904
L V +TA +G SG GK+T + D + G + +TG I + G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 905 KKQ---ETFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETR-RMFLEEI 957
+ E AR+ G Q PN ++YE++ Y P + R + L+EI
Sbjct: 91 PRLDVVELRARV-GMVFQK----PNPFPKSIYENVAYG------PRIHGLARSKAELDEI 139
Query: 958 MELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007
+E LR++ GL PG +GLS Q++RL IA + +P +I MDEP S
Sbjct: 140 VE----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192
Query: 1008 GLDARAAAIV 1017
LD A A V
Sbjct: 193 ALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 54/252 (21%)
Query: 131 KKKF---TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
K+F T L D++ V+ + LLGP +GKTT + + G + P SG V ++G
Sbjct: 7 TKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKP 63
Query: 188 MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+D + Y+ + +M V + L + A+ +G L + E I
Sbjct: 64 LD-IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG----------LKKEEARRRI--- 109
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
D ++ L L A ++ + +S G +++V +
Sbjct: 110 ---------------------DEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAV 143
Query: 308 V-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL--NGTAVISLLQPAPETYDLFDDI 364
+ P L L +DE +GLD V L+ +I L G VI +L D +
Sbjct: 144 IHDPEL-LILDEPFSGLDPVN----VELLKDVIRELARAGKTVILSTHQMELVEELCDRV 198
Query: 365 ILISEGQIVFQG 376
+L+++G+ V G
Sbjct: 199 LLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 62/256 (24%), Positives = 96/256 (37%), Gaps = 64/256 (25%)
Query: 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM-----DEFVP 193
D N + +T L GP SGKT+L+ +AG P GR+ NG + F+P
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLP 72
Query: 194 --QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+R Y+ Q TVR L + S R +
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGM-------------WKSMRAQF---------- 109
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGE-MLVGP 310
D ++ +LG++ D G +SGG+++RV G +L P
Sbjct: 110 -----------------DQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAP 147
Query: 311 ALALFMDEISTGLDSSTTFQIVT---SLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367
L L MDE LD +I+ LR I+I ++ + E L D ++++
Sbjct: 148 EL-LLMDEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVL 202
Query: 368 SEGQIVFQGPREHVLE 383
G++ GP E V
Sbjct: 203 ENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-06
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+L++V+ + P L+G +GK+TLL LAG+L+P SG VT
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRP--------KG 65
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
Y+SQ E TV + + +G G ++L EL E+ + DPD ++
Sbjct: 66 LRVGYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAEL---EEAYALLADPDDELLA 117
Query: 255 KALATEGQEASVVTDYVIKV----LGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGP 310
+ A + + + LG D V +SGG R+RV L+
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEE 171
Query: 311 ALALFMDEISTGLD 324
L +DE + LD
Sbjct: 172 PDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 867 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISG---YPKKQETFARIS-G 915
+TAL+G SG GK+TL+ D++ G K ITG + + G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 916 YCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
Q PN +++YE++ Y LR D + +E + L + +
Sbjct: 87 MVFQK----PNPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLK 140
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 141 SHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 43/253 (16%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
K+T+ +++ + T ++GP GK+TLL L+ + P+ G V +G ++ +
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYA 75
Query: 193 PQRTAAYI---SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
+ A I +Q+ G++TV+E +A RY +R K+ D
Sbjct: 76 SKEVARRIGLLAQNATTPGDITVQELVA--------RGRYPHQPLFTRWRKE-------D 120
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
+ KA+ G +T + D+ + +SGGQR+R +L
Sbjct: 121 EEAVTKAMQATG-----ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQ 160
Query: 310 PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369
+ +DE +T LD S ++ L + ++ G + ++L + +I + E
Sbjct: 161 ETAIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALRE 219
Query: 370 GQIVFQG-PREHV 381
G+IV QG P+E V
Sbjct: 220 GKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 1e-06
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1039 SIDIFEAFDELFLMKRG 1055
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISG---YPKKQETFA 911
V+ P +TA +G SG GK+T++ L G + G + + G Y + A
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 912 --RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R G Q P +++ ++++ A L+L + + L+E++E +S
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVV--AGLKL----NGVRNKKDLDELVE--------KS 128
Query: 970 LVG------------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L G PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 129 LRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 22/163 (13%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR 912
+L G+ G + AL+G +GAGK+TLM ++AG +G ++I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 913 ISGY----CEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIM-EL-VELNPL 966
Q + PN++V E++L+ LP S + +++++ L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK---MKQLLAALGCQLDLD 135
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 136 SSA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 65/217 (29%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L VS + G A++G +G+GK+TL +L G G I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 913 IS---GYCEQN-DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
+ G QN D TV + + + E + EE++E V+ LRQ
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-QALRQ 127
Query: 969 SLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
VG+ P LS Q++R+ IA L P II +DE TS LD R V+ TV
Sbjct: 128 --VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183
Query: 1022 RNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 1055
R + TV+ H D+ EA D + +M +G
Sbjct: 184 RQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191
K ++ V+ VK + LLGP +GKTT + G + P SG++ +G ++ +
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKL 67
Query: 192 VPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+ A Y+ Q ++TV E + +G+ + R EK
Sbjct: 68 PMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-------REEK------- 113
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
+ +++ + + +SGG+R+RV L
Sbjct: 114 --------------------LEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARAL 148
Query: 308 V-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL---QPAPETYDLFDD 363
P L +DE G+D V +++II IL I +L ET + D
Sbjct: 149 ATNPKF-LLLDEPFAGVDPIA----VQDIQKIIKILKDRG-IGVLITDHNVRETLSITDR 202
Query: 364 IILISEGQIVFQGPREHVLE 383
+I EG+++ +G E +
Sbjct: 203 AYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 62/278 (22%), Positives = 102/278 (36%), Gaps = 77/278 (27%)
Query: 118 EGFLNCLHILPSRKKK-FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLK 176
G + L L RK + LK ++ ++ + +GP +GKTT L L+G L P+
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-- 74
Query: 177 LSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMT-------VRETLAFSARCQGV--- 225
SG V G VP +R ++ + V G+ T V ++ A +
Sbjct: 75 -SGEVRVAG-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128
Query: 226 --GSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283
R D L EL LD+
Sbjct: 129 RFKKRLDELSEL-----------------------------------------LDL---E 144
Query: 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVT--SLRQIIHI 341
+ D +R +S GQR R L+ LF+DE + GLD +V ++R +
Sbjct: 145 ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD------VVAQENIRNFLKE 198
Query: 342 LN---GTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376
N GT V+ + L +++I +G++++ G
Sbjct: 199 YNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 27/103 (26%)
Query: 294 SGGQRKRVTTGEMLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILN------GTA 346
SGG R+RV L P L L DE +T LD VT QI+ +L GTA
Sbjct: 155 SGGMRQRVMIAMALALNPKL-LIADEPTTALD-------VTVQAQILDLLKELQREKGTA 206
Query: 347 VISLLQPAPETYDL------FDDIILISEGQIVFQGPREHVLE 383
+I + T+DL D + ++ G+IV +GP E + +
Sbjct: 207 LILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG-----YPKKQETFARISGYCEQ 919
G TA++G +G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 920 NDIHSPNVTVYESL---------LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
N ++TV E + L++ W + D ++ T+ M I L QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS- 140
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 58/255 (22%)
Query: 825 LSLTFEDV--VYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 882
+S+ FE+V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLM 50
Query: 883 DVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942
+G I I+GY ET G + V++
Sbjct: 51 QHFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQF---------- 93
Query: 943 PDVDSETRRMFLEEIMELVELNPLR----------QSLVGLPGVSGLSTE---------- 982
P+ ++F +++ VE P ++L L V GLS +
Sbjct: 94 PEA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELS 147
Query: 983 --QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD- 206
Query: 1041 DIFEAFDELFLMKRG 1055
D+ E D++ +++ G
Sbjct: 207 DVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISG 915
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 916 -YCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974
+ + N +P + + + LRL D++ E RR + E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNIKISGYPKK 906
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
+R+S + + + +L+S +R D + + L E +E+ +L +
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 967 RQSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+SL G G+ + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ V T RTVV H+ S I +A D + ++ RG
Sbjct: 197 KVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISGYPKKQ 907
+L+ + G + ++G SG+GK+TL+ + L +G I +K++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 908 ETFARI-SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
E R +G Q P++T E++++ P V ++ ++ EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGL 126
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1027 TGRTVVCTIHQ 1037
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 50/186 (26%), Positives = 74/186 (39%), Gaps = 39/186 (20%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIH 923
G + G +GAGKTTL+ VLAG +G I+I G + +R Y H
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLG----H 89
Query: 924 SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ--------SLVGLPG 975
P L D+ + LE + L L+ R ++VGL G
Sbjct: 90 LPG--------------LKADLST------LENLHFLCGLHGRRAKQMPGSALAIVGLAG 129
Query: 976 -----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V LS Q+KRL +A ++ + +DEP + LD +V R + + G
Sbjct: 130 YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189
Query: 1031 VVCTIH 1036
+ T H
Sbjct: 190 ALVTTH 195
|
Length = 214 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 29/153 (18%)
Query: 868 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------IKISGYPKKQETFARISGYC 917
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 918 EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977
Q+ P+ V +L Y +++ ++I+ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYGM---------AKSMVAQFDKIVALLGIEPL---LDRYP--G 127
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 60/242 (24%)
Query: 826 SLTFEDVV--YSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 883
+ E++ Y+ D+P +L VS + G ++G +GAGK+TL
Sbjct: 6 EIEVENLSVRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL-- 50
Query: 884 VLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL--------LY 935
+LA + G I+I G + P + SL L+
Sbjct: 51 ILALFRFLEAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLF 94
Query: 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995
S +R D E EEI + ++ G LS QR+ L +A L+
Sbjct: 95 SGTIRSNLDPFDEYSD---EEIYGALRVSE---------GGLNLSQGQRQLLCLARALLK 142
Query: 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMK 1053
P ++ +DE T+ +D A++ +T+R T T++ H + ID +D++ +M
Sbjct: 143 RPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMD 197
Query: 1054 RG 1055
G
Sbjct: 198 AG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 65/271 (23%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH---NMDE 190
+ DVN ++ +L+GP SGKTT L + ++P+ SG + +G ++D
Sbjct: 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDP 70
Query: 191 FVPQRTAAYISQHDVHIG---EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+R Y+ Q IG +TV E +A + G +
Sbjct: 71 VELRRKIGYVIQ---QIGLFPHLTVAENIATVPKLLGW----------DKERIKKRA--- 114
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
D ++ ++GLD D +SGGQ++RV
Sbjct: 115 ---------------------DELLDLVGLDPSE---YADRYPHELSGGQQQRVG----- 145
Query: 308 VGPALA-----LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362
V ALA L MDE LD T Q+ +++ + G ++ + E L D
Sbjct: 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKE-LQKELGKTIVFVTHDIDEALKLAD 204
Query: 363 DIILISEGQIVFQGPREHVL-----EFFKSM 388
I ++ G+IV + +L +F +
Sbjct: 205 RIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 66/248 (26%), Positives = 96/248 (38%), Gaps = 71/248 (28%)
Query: 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPS---LKLSGRVTYNGHNMDEFVPQRTAAYI 200
L LLGP +GKTTLL A+ G + P+ +K++G G +VPQR
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR----- 57
Query: 201 SQH----DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKA 256
H D I +V T+ S R +G RR A+
Sbjct: 58 --HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADF------------ 91
Query: 257 LATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA--- 313
++ +GL AD VG+ +SGGQR+RV LV ALA
Sbjct: 92 ---------AAVRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRP 132
Query: 314 --LFMDEISTGLDSSTTFQIV---TSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368
L +DE TGLD T + L GTA++ + D ++L++
Sbjct: 133 SVLLLDEPFTGLDMPTQELLTELFIELAG-----AGTAILMTTHDLAQAMATCDRVVLLN 187
Query: 369 EGQIVFQG 376
G+++ G
Sbjct: 188 -GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 895
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNIKISG---YPKKQ 907
L+G+S F LTAL+G SG GK+T + L R ITG IK G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 908 ETFA--RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
+ + G Q P +VY+++ Y L++ D E +EE ++ +
Sbjct: 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAI-- 133
Query: 966 LRQSLVGLP-GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
+++ L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQ 907
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I + K I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-L 966
++ E + S +TV E+L + R F E I + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1027 TGRTVVCTI 1035
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 43/185 (23%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQ- 907
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I + I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 908 ------ETFARISGYCEQNDIHSPNVTVYESLL-----------YSAWLRLPPDVDSET- 949
TF + + E +TV E+LL +S L+ P +E+
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 950 ---RRMFLEEIMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005
R E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 1006 TSGLD 1010
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQETF 910
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R G+ Q+ ++TV++++ + L + P + ++ +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 22/203 (10%)
Query: 848 LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGG---YITG 896
++DK +L + ++ + +MG SG+GK+TL+ VL + K G Y
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 897 NI-KISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLE 955
+I +I ++E G Q P++++Y+++ Y L+ + + +E
Sbjct: 79 DIFQIDAIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVE 131
Query: 956 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
E + V L + P S LS Q++RLTIA L P ++ MDEPTS +D +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQP 1038
+ + + + +V H P
Sbjct: 191 AIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI-----SGYPKKQETFARISGYCEQ 919
G + A+MG SGAGK+TL++++AG +G+IK+ +G Q + + + E
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSML--FQEN 79
Query: 920 NDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979
N ++TV +++ L L P + + E++++ + + L LP L
Sbjct: 80 NLF--AHLTVRQNI----GLGLHPGLKLNAEQQ--EKVVDAAQQVGIADYLDRLPE--QL 129
Query: 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1038
S QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 1039 S 1039
S
Sbjct: 190 S 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 70/275 (25%), Positives = 109/275 (39%), Gaps = 56/275 (20%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
FT LKD++ VK LLGP GKTTLL +AG + +G + G ++ P
Sbjct: 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPP 73
Query: 194 Q-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
Q R + Q +TV + +A+ + +G+G R E +
Sbjct: 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----------RAEVAERV-------- 115
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV-GPA 311
++ ++GL G +SGGQ++RV L P
Sbjct: 116 ----------------AELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPG 154
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
L L +DE + LD+ + T +RQ+ L T I + E + D I++++ G
Sbjct: 155 L-LLLDEPLSALDARVREHLRTEIRQLQRRLGVTT-IMVTHDQEEALSMADRIVVMNHGV 212
Query: 372 IVFQG-PREHVLEFFKSMGFECPKRKGVADFLQEV 405
I G P+E + P VADF+ EV
Sbjct: 213 IEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 60/237 (25%), Positives = 91/237 (38%), Gaps = 55/237 (23%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAA------YISQHDV 205
LLGP +GK+T+ L G + P G++T + E VP R + Q D
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSRARLARVAIGVVPQFDN 87
Query: 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEAS 265
E TVRE L R G +S RE +A I
Sbjct: 88 LDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS------------------- 118
Query: 266 VVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDS 325
+++ L+ AD V +SGG ++R+T L+ L +DE +TGLD
Sbjct: 119 -----LLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDP 168
Query: 326 STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
I LR ++ G ++ E L D + ++ G+ + +G R H L
Sbjct: 169 HARHLIWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVLESGRKIAEG-RPHAL 222
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 54/220 (24%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
IL +++ ++ L+ GP GK+TLL +A + P+ SG + + G ++ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 195 R---TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+Y +Q G+ TV + L F + + N +PDP I
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-------------------NQQPDPAI- 116
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
F+ L L DT++ + + +SGG+++R++ L
Sbjct: 117 -FLDDLER---------------FALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILN---GTAVI 348
L +DEI++ LD S ++ +IIH AV+
Sbjct: 157 KVLLLDEITSALDESNK----HNVNEIIHRYVREQNIAVL 192
|
Length = 225 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNIKISGYPKKQE- 908
VS F +TA++G SG GK+T++ + + R TG + + I Y + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVDP 80
Query: 909 -TFARISGYCEQNDIHSPNVTVYESLL--YSAWLRLPPD-----VDSETRRMFL-EEIME 959
+ R G Q P +++Y++++ Y R+ V+S +R+ L +E+ +
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++ N + LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKSNAME-----------LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 27/190 (14%)
Query: 866 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISG---YPKKQETFA--RISGYC 917
+ ALMG SG GK+TL+ + L + G +++ G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 918 EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL--------NPLRQS 969
Q P++T+Y+++ + ++L V S+ +E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1030 TVVCTIHQPS 1039
T+V H P+
Sbjct: 200 TIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 41/284 (14%)
Query: 825 LSLTFEDV--VYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 882
+++ F++V Y P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 1 MTIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLI 50
Query: 883 DVLAG--RKTGGYIT-GNIKISGYPKKQE--TFARISGYCEQNDIHSPNVTVYESLLYSA 937
+ + T G +T +I I+ K + + G Q P ++E +
Sbjct: 51 QNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ----FPESQLFEDTVERE 106
Query: 938 WLRLPPDVDSETRRMFLEEIME-----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 992
+ P + +M L+E+ L++L R + P +S Q +++ I
Sbjct: 107 IIFGPKNF-----KMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSI 159
Query: 993 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFL 1051
L NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +
Sbjct: 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIV 218
Query: 1052 MKRGGYEIYVGP--LGRHSSHLISYFEAIPGVNK----IKDGYN 1089
MK G P L + L + +P + + + Y
Sbjct: 219 MKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 5e-06
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISGYPK 905
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSN 74
Query: 906 KQETFARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN 964
+ T AR G Q+ + TV+ ++ LP ++D+ + ++ EL+ L
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNTPKDEIKRKVTELLALV 128
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 129 GLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 63/258 (24%), Positives = 92/258 (35%), Gaps = 74/258 (28%)
Query: 140 VNGI---VKPSRLTLLLGPPASGKTTLLLALAGKLDP---SLKLSGRVTYNGHNMDEFVP 193
V+G+ V+ LLGP +GKTT L L G P S+ L G E VP
Sbjct: 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG----------EPVP 72
Query: 194 QRT------AAYISQHDVHIGEMTVRETLAFSARCQGVGS-----RYDMLVELSRREKDA 242
R + Q D + TVRE L R G+ + L+E ++ E A
Sbjct: 73 SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA 132
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
D VG+ +SGG ++R+T
Sbjct: 133 ---------------------------------------DAKVGE-----LSGGMKRRLT 148
Query: 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362
LV L +DE +TGLD + LR ++ G ++ E L D
Sbjct: 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCD 206
Query: 363 DIILISEGQIVFQG-PRE 379
+ +I EG+ + +G P
Sbjct: 207 RLCVIEEGRKIAEGAPHA 224
|
Length = 306 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 73/261 (27%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRV-------TYNGHNMD 189
LK +N + + LLGP +GK+TL L G L P+ SG V Y+ ++
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74
Query: 190 EFVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
E ++T + Q+ D + TV E +AF G+ E+ +R K+A
Sbjct: 75 EV--RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA------ 121
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+KA+ EG E ++ +SGGQ+KRV +L
Sbjct: 122 -----LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILA 153
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNG---TAVISLLQPAPETYDL----- 360
+ +DE ++GLD QI+ ++++ LN T +IS T+D+
Sbjct: 154 MKPEIIVLDEPTSGLDPMGASQIM----KLLYDLNKEGITIIIS-------THDVDLVPV 202
Query: 361 -FDDIILISEGQIVFQG-PRE 379
D + ++S+G+I+ +G P+E
Sbjct: 203 YADKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 60/269 (22%), Positives = 103/269 (38%), Gaps = 60/269 (22%)
Query: 125 HILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184
++ + ++N + +L+GP SGKTT + + ++P+ SG + +
Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFID 61
Query: 185 GHNMDEFVP---QRTAAYISQHDVHIG---EMTVRETLAFSARCQGVGSRYDMLVELSRR 238
G ++ E P +R Y+ Q IG MTV E +A + +
Sbjct: 62 GEDIREQDPVELRRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWPK--------EKI 110
Query: 239 EKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298
+ A D ++ ++GLD D +SGGQ+
Sbjct: 111 RERA--------------------------DELLALVGLD---PAEFADRYPHELSGGQQ 141
Query: 299 KRVTTGEMLVGPALA-----LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353
+RV V ALA L MDE LD T Q+ +++ L T ++ +
Sbjct: 142 QRVG-----VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT-IVFVTHD 195
Query: 354 APETYDLFDDIILISEGQIVFQGPREHVL 382
E + L D I ++ G+IV G + +L
Sbjct: 196 IDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 44/226 (19%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 210
++GP +GK+TLL +AG ++P+ SG + N + P QR + + Q + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDY 270
TVR+ + + P +K A + ++
Sbjct: 86 TVRQNIGLG------------------------LHPG------LKLNAEQQEKVVDAAQQ 115
Query: 271 VIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQ 330
V G+ D + D + +SGGQR+RV LV P L +DE + LD +
Sbjct: 116 V----GIA---DYL--DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
Query: 331 IVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376
++ ++Q+ T ++ + + + I ++S+G+I
Sbjct: 167 MLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 13/189 (6%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNIKISGYPK 905
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
E F R G Q P + L +L P E R + + E+ +
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1026 DTGRTVVCT 1034
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKKQ 907
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 908 ETF-----ARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
F R G Q +PN +++Y+++ Y P + + L+EI+E
Sbjct: 79 NNFDILELRRKIGMVFQ----TPNPFLMSIYDNISYG------PKIHGTKDKKKLDEIVE 128
Query: 960 --LVE---LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 129 QSLKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 1015 AIVMRTVRNTVDTGRTVVCT 1034
+ + N ++ ++ T
Sbjct: 187 GKIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 25/169 (14%)
Query: 867 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKISGYPKKQETFARIS---GYCEQNDI 922
+TAL+G SG GK+T + I G ++I G K + + G Q
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQ-- 87
Query: 923 HSPNV---TVYESLLYSAWLR-LPPDVDSETRRMFLEEIMELVEL-----NPLRQSLVGL 973
PNV ++YE++ Y+ L + + D E + + ++ V L + L+Q+ + L
Sbjct: 88 --PNVFVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALAL 143
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 144 SG------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 9e-06
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 859 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNIKISGYPKKQETFARISG 915
G G V+ + G +G GKTT +LAG G + +KIS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 916 YCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG 975
+ TV + LL S D+ S + EI++ ++L L V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 62/263 (23%), Positives = 95/263 (36%), Gaps = 75/263 (28%)
Query: 127 LPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH 186
L R K T + +++ V + + LLGP +GK+TLL + G L P+ SG + ++GH
Sbjct: 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGH 62
Query: 187 NMDEFVPQRTAAYISQHDVH-IG----------EMTVRETLAFSARCQGVGSRYDMLVEL 235
++ D+H IG +T RE L G+
Sbjct: 63 PW------------TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL---------- 100
Query: 236 SRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295
PD I D V+ ++ L S
Sbjct: 101 ----------PDSRI------------------DEVLNIVDLTNTGKKKAKQ-----FSL 127
Query: 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL--NGTAVISLLQP 353
G ++R+ L+ L +DE + GLD + LR++I G VI
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIG----IQELRELIRSFPEQGITVILSSHI 183
Query: 354 APETYDLFDDIILISEGQIVFQG 376
E L D I +ISEG + +QG
Sbjct: 184 LSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 64/256 (25%), Positives = 104/256 (40%), Gaps = 52/256 (20%)
Query: 132 KKF---TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
K F LK VN V P + LLG +GK+TL+ L+G +P+ G +T N N
Sbjct: 13 KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINY 69
Query: 189 DEFVPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
++ + A I Q I E+TV E L + R L+++ NI
Sbjct: 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENL-YIGR------------HLTKKVCGVNI 116
Query: 245 KPDPDID-VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
ID M+ A+++ V GL V D V + +S ++ +
Sbjct: 117 -----IDWREMR------VRAAMMLLRV----GLKVDLDEKVAN-----LSISHKQMLEI 156
Query: 304 GEMLVGPALALFMDEISTGLDSSTT---FQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
+ L+ A + MDE ++ L + F I+ LR+ GTA++ + E +
Sbjct: 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRI 211
Query: 361 FDDIILISEGQIVFQG 376
D ++ +G V G
Sbjct: 212 CDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKISGYPKKQETFA 911
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 912 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R G Q+ + TVY+++ + L + + RR + ++ L+ +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNV--AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
+ L G +++R+ IA +V P+++ DEPT LD + ++R G T
Sbjct: 136 IQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189
Query: 1031 VVCTIH 1036
V+ H
Sbjct: 190 VLMATH 195
|
Length = 222 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 867 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGY----PKKQETFARIS- 914
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL-NPLRQSLVGL 973
G Q P +++Y+++ + R+ +EE ++ L + ++ L
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NK 142
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 143 PGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL----LDGVPLVQ----- 547
Query: 913 ISGYCEQNDIHSPNVTV-YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
+ + +H V E +L+S +R ++ EEIM + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 972 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 1023 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ RTV+ H+ S E D++ ++K+G
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 43/172 (25%), Positives = 59/172 (34%), Gaps = 59/172 (34%)
Query: 848 LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPK 905
+ ++GVS + + G L+G SG GK+TL ++ G T G I +
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL-------FEG 74
Query: 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
K T E ++EL+E
Sbjct: 75 KDITKLSKEER-------------------------------------RERVLELLEK-- 95
Query: 966 LRQSLVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
VGLP LS QR+R+ IA L NP +I DEP S LD
Sbjct: 96 -----VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 48/189 (25%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISG---YP 904
L +S +TA +G SG GK+TL+ D++ + I G I++ G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 905 KKQE--TFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
KK + R G Q PN ++YE+++Y LRL R L+E +E
Sbjct: 97 KKVDVAELRRRVGMVFQR----PNPFPKSIYENVVYG--LRL----QGINNRRVLDEAVE 146
Query: 960 LVELNPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
+SL G GLS Q++RL IA + P ++ +DEPTS
Sbjct: 147 --------RSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSA 198
Query: 1009 LDARAAAIV 1017
LD + +
Sbjct: 199 LDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 46/237 (19%)
Query: 150 TLLLGPPASGKTTLLLALAGKLDPS---LKLSGRVTYNGHNMDEFVP-QRTAAYISQHDV 205
T + G SGKTTL+ +AG P + L+GR ++ P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEAS 265
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 266 VVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDS 325
+ + VI++LG+ + G +SGG+++RV G L+ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 326 STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
++I+ L + +H G ++ + E L D ++++ +G++ GP V
Sbjct: 165 PRKYEILPYLER-LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 34/176 (19%)
Query: 849 DDKLVL----LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904
D K V+ L +G F LT L+G SG GKTT++ ++AG +T +G I + G
Sbjct: 25 DGKEVISNLDLTINNGEF----LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-- 75
Query: 905 KKQETFARISGYCEQNDIHS--------PNVTVYESLLYSAWLRLPPDVDSETRRMFLEE 956
+ + E +++ P++TV+E++ + ++ P + R M E
Sbjct: 76 ---QDITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM---E 127
Query: 957 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ +V+L Q LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 128 ALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
LK VN ++ L+G GK+TLL ++G P+ SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 197 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKA 256
+ Q+ + +TVRE +A + +L +LS+ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 257 LATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFM 316
+ + I ++GL AD G +SGG ++RV L L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 317 DEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG------ 370
DE LD+ T + L QI + V+ + E L D +++++ G
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWE-EHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
Query: 371 ---QIVFQGPRE 379
++ F PR+
Sbjct: 198 QILEVPFPRPRD 209
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 39/209 (18%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG----------- 902
+L G++ RPG + A+MG +G+GK+TL LAGR+ G ++ G
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 903 ----------YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
YP I G Q + + V R +D +
Sbjct: 76 AGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLDRFDFQD 122
Query: 953 FLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
+EE + L+++ L V + G S ++KR I V P + +DE SGLD
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
A IV V + D R+ + H I
Sbjct: 179 DALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 867 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNIKISGYPKKQETFARISGY 916
+TA++G SG GK+T +++++ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 917 CEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
++ PN ++Y+++ Y P + + L+EI+E +SL G
Sbjct: 111 FQK-----PNPFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGA 151
Query: 974 P-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Query: 1246 SSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGM 1305
S + Y ++L ++ +Q ++ ++++ G + + L + G
Sbjct: 135 SPLKYLLGKILGDLLVGLIQLLIILLLLF---GLGIPFGNLLLLLLLFLLYGLAYIALGA 191
Query: 1306 MCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQ 1365
+ ++ N A +V + + F G + P +P + +W + P + GL+
Sbjct: 192 LLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRII 251
Query: 1366 FG 1367
+G
Sbjct: 252 YG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 29/181 (16%)
Query: 844 LQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNIK 899
L+ +D +V+ +S RPG L+G SG+GK+T L+ ++ + G I
Sbjct: 292 LKRTVDHNVVV-KNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIW 343
Query: 900 ISGYPKKQETFARISGYCEQ--------NDIHSPNVTVYESLLYSAWLRL-PPDVDSETR 950
G P ++ + N +P + V + + LR+ P + + R
Sbjct: 344 FDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQR 401
Query: 951 RMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+ +ME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS L
Sbjct: 402 EQQVIAVMEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456
Query: 1010 D 1010
D
Sbjct: 457 D 457
|
Length = 529 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 39/262 (14%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
L D+N + +++T L+GP GK+T L L L ++K+ G V +G N
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
I DV + E+ R + F S YD N+ P I
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYD------------NVAYGPRIHGIK 115
Query: 255 KALATEGQEASVVTDYVIKVLGL-DVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA 313
+E + ++ +K L D D + + +SGGQ++R+ +
Sbjct: 116 DK-----KELDKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDV 168
Query: 314 LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD-----LFDDIILIS 368
+ MDE ++ LD +T +I + ++ V +Q A D L D+I +
Sbjct: 169 ILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228
Query: 369 EGQIVFQGPREHVLEFFKSMGF 390
+ + +F P++ E + S F
Sbjct: 229 KTEKIFLEPQKKETEDYISGRF 250
|
Length = 251 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 34/208 (16%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGNIKI 900
+L +L VS G AL G SGAGK+TL+ L +GR + G +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 901 SG----YPKKQETFARISGYCEQNDIHSPNVT----VYESLLYSAWLRLPPDVDSETRRM 952
S +++ GY Q P V+ V E LL P + R
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARARARE 131
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
L LN + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 132 LLAR------LN-IPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 24/173 (13%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 908 ETFARISGYCEQNDIH----------SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI 957
R + SP +TV ++ P + + R + E
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEA 409
Query: 958 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+E V L+P + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 410 LEEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 53/229 (23%), Positives = 83/229 (36%), Gaps = 67/229 (29%)
Query: 811 NQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTAL 870
N +R + P E ++L+ +D+ V K + G+ F +TAL
Sbjct: 5 NWNERHIITFPEEEIALSTKDL-------------HVYYGKKEAIKGIDMQFEKNKITAL 51
Query: 871 MGVSGAGKTTLMDVLA---GRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNV 927
+G SG+GK+T + L +TG I G DI+ +
Sbjct: 52 IGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-----------------DINRKEI 94
Query: 928 TVYESLLYSAWLRLPPD---------------VDSETRRMFLEEIMELVELNPLRQSLV- 971
VYE + + P+ + L+EI+E L+Q+ +
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVE----TSLKQAALW 150
Query: 972 ----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L LS Q++RL IA + P I+ MDEP S LD
Sbjct: 151 DQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD----E 190
T+L DV+ ++ + LLGP SGK+TLL +AG +P SG + +G ++ E
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDE 70
Query: 191 FVPQRTA-AYISQHDVHIGEMTVRETLAF 218
P R + Q +TV E +A
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 33/162 (20%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 161 TTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTA----AYISQHDVHIGEMTVRETL 216
+TLL + G L P+ SG + +G + ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 217 AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG 276
F R +AL +G
Sbjct: 58 FFGLR------------------------DKEADARAEEALER---------------VG 78
Query: 277 LDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDE 318
L D + SGGQ++RV L+ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 70/276 (25%), Positives = 108/276 (39%), Gaps = 48/276 (17%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS---LKLSGRVTYNGHNMDEFVP 193
L D++ VK T L+G SGK+TLL L G L P+ + + V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 194 QRTAAYISQH--DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
R + + + E TV + +AF + G+ + EK A K +
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE--------KAEKIAAEKLE---- 129
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
M LA E E S +SGGQ +RV +L
Sbjct: 130 --MVGLADEFWEKSPFE------------------------LSGGQMRRVAIAGILAMEP 163
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
L +DE + GLD +++ L + IH +G V+ + + D D + L+ +G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMM-QLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 372 IVFQGPREHV---LEFFKSMGFECPKRKGVADFLQE 404
I+ G V ++F K+ PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 41/252 (16%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAG--KLDPSLKLSGRVTYNGHN---MDE 190
+L VN + + +T L+GP SGK+TLL +L P ++SG V +G + MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 191 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI 250
+R + Q I +++ E +A +G + + LV+ S++E ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVA-------LGLKLNRLVK-SKKELQERVR----- 124
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGP 310
E + + D V L +SGGQ++R+ L
Sbjct: 125 ---------WALEKAQLWDEVKDRLDAPAGK-----------LSGGQQQRLCIARALAFQ 164
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370
L DE + LD T +I SL + + ++ + + + D + + +G
Sbjct: 165 PEVLLADEPTANLDPENTAKI-ESL--FLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 371 QIVFQGPREHVL 382
QIV GP V
Sbjct: 222 QIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 44/235 (18%)
Query: 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQ 202
V + +LGP +GK+TLL +AG P+ SG + NG + P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQ 262
+ +TV + + G + + +REK + F+K L E
Sbjct: 79 ENNLFAHLTVAQNIGL-------GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE-- 129
Query: 263 EASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTG 322
+SGGQR+RV LV L +DE +
Sbjct: 130 ------------------------------LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 323 LDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGP 377
LD + +++ + Q + ++ + + + D ++ + G+I QG
Sbjct: 160 LDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 42/167 (25%)
Query: 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDI---- 922
+TAL+G SG GK+T + L + I+ N+KI G + + Y + D+
Sbjct: 32 ITALIGPSGCGKSTFLRCL--NRMNDLIS-NVKIEG----EVLLDGKNIYDKDVDVVELR 84
Query: 923 -------HSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV--------EL- 963
PN +++Y+++ Y P + + L++I+E E+
Sbjct: 85 KRVGMVFQKPNPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ L++S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 139 DDLKKSALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 30/206 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNIKISGYPKKQETF 910
L VS G L+G +GAGK+TL+ +LAG I +G + + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 911 ARISGYCEQNDIHSPNVTVYESL-LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R+S +P +T E++ L L L E ++EI+E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID- 137
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1030 TVVCTIHQPSIDIFEAFDELFLMKRG 1055
TV+ H PS I D ++++G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 41/207 (19%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDI-- 922
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 923 --HS----PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGV 976
S P++++ E++ Y L++ V E R+ ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1031
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1032 VCTIHQPSIDIFEAF---DELFLMKRG 1055
+ H S EAF D + +M +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 28/204 (13%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG--------- 902
L +L+G++ + G AL+G SG+GK+T++ +L + G I++ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 903 ----YPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFL 954
P ++ ++ G Q+ P+ TV +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 955 EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1015 AIVMRTVRN-TVDTGRTVVCTIHQ 1037
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 57/249 (22%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ-- 194
L +N V+P L+GP +GK+TL L DP SGR+ +G ++ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP-DIDVF 253
R + D + +V E + + +PD D +V
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG-------------------------RPDATDEEVE 447
Query: 254 MKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA 313
A A E + L DT +G+ + +SGGQR+R+ ++ A
Sbjct: 448 AAARAAHAHEF---------ISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPI 497
Query: 314 LFMDEISTGLDSSTTFQIVTSL------RQIIHILNGTAVISLLQPAPETYDLFDDIILI 367
L +DE ++ LD+ + + +L R + I + A + A D I+++
Sbjct: 498 LLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV---LKA-------DRIVVM 547
Query: 368 SEGQIVFQG 376
+G+IV QG
Sbjct: 548 DQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-05
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYP-KKQ-E 908
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 909 TFARISGYC-EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ + Y Q I +T E+L + L P D ++ L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQRLHGPGDDEA------------------LW 111
Query: 968 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1021 VRNTVDTGRTVVCTIHQP 1038
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 18/204 (8%)
Query: 844 LQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG- 902
L +++ +L G++ + G + A+MG +G+GK+TL V+AG + G+I G
Sbjct: 13 LHASVNENEIL-KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE 71
Query: 903 --YPKKQETFARISGYCE-QNDIHSPNVT-------VYESLLYSAWLRLPPDVDSETRRM 952
+ E A + + Q I P V+ Y S L P++D
Sbjct: 72 SILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLE--- 125
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
FLE I E ++L + S + G S ++KR I + + + +DE SGLD
Sbjct: 126 FLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIH 1036
A I+ + + + +++ H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 29/217 (13%)
Query: 831 DVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RK 889
+VV V+ L + + VS R G + + GV+G G++ L++ ++G RK
Sbjct: 255 EVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK 309
Query: 890 TGGYITGNIKISGYPKKQETFARIS-----GYCEQNDIH---SPNVTVYESLLYSAWLRL 941
+G I ++G R Y ++ ++++ E+L+
Sbjct: 310 P---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDK 365
Query: 942 PPDVDSETRRMFL--EEIM----ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995
P R FL I EL+E +R P LS +++L +A EL
Sbjct: 366 KPFS----RGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELAR 420
Query: 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
P ++ +PT GLD A + + D G+ V+
Sbjct: 421 RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 60/258 (23%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ- 194
ILK ++ ++ ++GP SGK+TL L G P SG V +G ++ ++ +
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDREQ 407
Query: 195 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
R Y+ Q DV + + T+ E +A R ++A DP+ +
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-------------------RFGEEA----DPEKVI 443
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG-PA 311
EA+ + +L L DT +G+ +SGGQR+R+ L G P
Sbjct: 444 ----------EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPF 492
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVI-----SLLQPAPETYDLFDDI 364
L + +DE ++ LDS I+ GT V+ S L D I
Sbjct: 493 L-VVLDEPNSNLDSEGE---AALAAAILAAKARGGTVVVIAHRPSALASV-------DKI 541
Query: 365 ILISEGQIVFQGPREHVL 382
+++ +G+I GPRE VL
Sbjct: 542 LVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 52/273 (19%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-VPQ 194
+L D++ + ++ LLGP SGKTTLL +AG + SG + ++G ++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARD 73
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
R ++ QH MTV + +AF L L RRE+ P+
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAAAIK 114
Query: 255 KALATEGQEASVVTDYVIKVLG-LDVCADTMVGDEMLRGISGGQRKRVTTGEML-VGPAL 312
KV L++ + D +SGGQ++RV L V P +
Sbjct: 115 A-----------------KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
L +DE LD+ ++ LRQ+ L T+V + E ++ D ++++S+G I
Sbjct: 158 -LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNI 215
Query: 373 VFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405
G + V + P + V +F+ EV
Sbjct: 216 EQAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 52/206 (25%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR 912
+L +S + G AL+G SG+GK+TL+ +TG++K
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLL---------QLLTGDLKPQ----------- 55
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLP--PDVDSETRRMFLEEIMELVELNPLRQSL 970
G + + V+ E L S L P + T LR +L
Sbjct: 56 -QGEITLDGVP---VSDLEKALSSLISVLNQRPYLFDTT----------------LRNNL 95
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
G S +R+RL +A L+ + I+ +DEPT GLD ++ + V +T
Sbjct: 96 -GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKT 149
Query: 1031 VV-CTIHQPSIDIFEAFDELFLMKRG 1055
++ T H I E D++ ++ G
Sbjct: 150 LIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 45/226 (19%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKK 906
+ + L VS G A++G +G+GK+T+ +L G + G IKI G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 907 QETFARIS---GYCEQN-DIHSPNVTVYESLLYSAWL---RLPPD-----VDSETRRMFL 954
+E I G QN D TV + + + L ++PP +D +++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG--LENKKVPPKKMKDIIDDLAKKVGM 132
Query: 955 EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
E+ ++ N LS Q++R+ IA L NP II DE TS LD +
Sbjct: 133 EDYLDKEPQN--------------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 1015 AIV---MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRG 1055
+ M +R T +T++ H D+ EA D++ + G
Sbjct: 179 REIKKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFSEG 218
|
Length = 271 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 841 EMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI 900
E K +L +S F G + ++G SGAGK+TL+ ++ + G+I I
Sbjct: 5 EFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILI 62
Query: 901 SGYPKKQ----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE 956
G K + +I +Q H TV +++ Y L+ +VD +E
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGEKNVD-------VEY 113
Query: 957 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
+ +V LN V LS + +R++IA L NP ++ +DEPTS LD + I
Sbjct: 114 YLSIVGLN----KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 1017 VMRTVRN 1023
+ +
Sbjct: 170 IEELIVK 176
|
Length = 241 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 46/231 (19%)
Query: 153 LGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQ--HDVHIG-- 208
+G +GK+TLL A+AG L P+ SG++ +G ++ + + A +++ D G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94
Query: 209 -EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVV 267
E+T+ E LA A +G + RR F + LA G
Sbjct: 95 PELTIEENLAL-AESRGKKRGLSSALNERRR------------SSFRERLARLG------ 135
Query: 268 TDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSST 327
LGL+ +G +SGGQR+ ++ + P L +DE + LD T
Sbjct: 136 -------LGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKT 183
Query: 328 TFQIVTSLRQIIHILNGTAVI---SLLQPAPETYDLFDDIILISEGQIVFQ 375
++ +I+ T ++ ++ D + +I++ G+IV
Sbjct: 184 AEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 33/194 (17%)
Query: 838 MPQEMKLQG-VLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 890
MPQ+++L+ L L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 891 GGYITGN-IKISGYPKKQETFARI-----SGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944
G + + ++ + A I S + N +H+ + E+ L P D
Sbjct: 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETCLALG---KPAD 114
Query: 945 VDSETRRMF---LEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001
+ T + LE +++L P +S +R+ IA+ L+ I
Sbjct: 115 DATLTAALEAVGLENAARVLKLYPFE-----------MSGGMLQRMMIALALLCEAPFII 163
Query: 1002 MDEPTSGLDARAAA 1015
DEPT+ LD A A
Sbjct: 164 ADEPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR--ISGYCEQN 920
G A++G SGAGK+TL++++AG T +G++ ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 921 DIHSPNVTVYE--SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978
++ ++TV + L + L+L + +R L I + + L L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKL-----NAAQREKLHAIARQMGIEDL---LARLPG--Q 129
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 49/260 (18%)
Query: 796 STSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLL 855
S S L A + SG +P + + E V+ + D+ V L
Sbjct: 8 SDESSDGLITTTTATDTTDPSG-----DPAASSGETVIEARDL-------NVFYGDEQAL 55
Query: 856 NGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISG---YPKKQET 909
+ VS +TA++G SG GK+T + + + + G + G Y +
Sbjct: 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115
Query: 910 FA--RISGYCEQNDIHSPN---VTVYESLLYSAWLRL---PPDVDSETRRMFLEEIMELV 961
A R G Q PN ++Y+++ Y L++ D+D +EE +
Sbjct: 116 VALRRRIGMVFQK----PNPFPKSIYDNVAYG--LKIQGYDGDIDER-----VEESLRRA 164
Query: 962 EL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
L + L S + L G Q++RL IA + +P +I MDEP S LD A +
Sbjct: 165 ALWDEVKDQLDSSGLDLSG------GQQQRLCIARAIAPDPEVILMDEPASALDPVATSK 218
Query: 1017 VMRTVRNTVDTGRTVVCTIH 1036
+ + + TVV H
Sbjct: 219 IEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 42/225 (18%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQET 909
D +L GVS +TA++G SG GK+T + L + +++ G + E
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEG---RVEF 71
Query: 910 FARISGYCEQNDIH-----------SPNV---TVYESLLYSAWL---RLPPDVDSETRRM 952
F + + Y + +++ PN+ +VY+++ Y + R ++D
Sbjct: 72 FNQ-NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD----- 125
Query: 953 FLEEIMELVEL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007
+E ++ +L + + +S + L G Q++RL IA L P ++ MDEP
Sbjct: 126 IVESALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCF 179
Query: 1008 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 1050
GLD A+ V +++ + + T+V H + F F
Sbjct: 180 GLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 913 ISGYCEQN-DIHSPNVTVYESLLYSAW-LRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
+ G QN + TV E L + L LPP E R+ + E + L R
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAE-IGLEKYRHR- 132
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
LS Q + + +A L P + DE TS LD + V+ ++ + G+T
Sbjct: 133 ----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188
Query: 1031 VVCTIHQPSIDIFEAFDELFLMKRG 1055
+V H +++ D + +M RG
Sbjct: 189 IVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL-SGRVTYNGHN 187
ILK VN +K + L+GP SGK+TL + G P ++ G + + G +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGED 65
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 47/181 (25%), Positives = 64/181 (35%), Gaps = 45/181 (24%)
Query: 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQH 203
V L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHL 90
Query: 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQE 263
+++ E L F G RR K P ALA G
Sbjct: 91 PGLKADLSTLENLHFLCGLHG------------RRAKQM---PG-------SALAIVG-- 126
Query: 264 ASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGL 323
+ Y DT+V R +S GQ+KR+ + + PA +DE L
Sbjct: 127 ---LAGY----------EDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 324 D 324
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 872 GVSGAGKTTLMDVLAGRK---TGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVT 928
G SG GK+TL+ ++AG + +G G +++ P + R G Q+ P+++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 929 VYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL--RQSLVGLPGVSGLSTEQRKR 986
V E++ S L+L E + ++ E+++L L R+ LS QR+R
Sbjct: 92 VAENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 23/235 (9%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNIKISGYPKKQET 909
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 910 F-ARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
R QN + P T+ + + S+ R + E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL---SKQARALILEALEAVGLPDP 115
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1025
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------YEIYVGPLGRHSSHLIS 1073
G ++ H + + DE+ +M G EI+ P + L+S
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNM-- 188
F +K+V + ++T L+GP GK+T+L +L L L GRV ++G ++
Sbjct: 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84
Query: 189 ---DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
D +R + Q + ++ E +AF AR G D LVE S R
Sbjct: 85 PRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLR------- 136
Query: 246 PDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGE 305
+A+V D C D + +E +SGGQ++R+
Sbjct: 137 -----------------KAAV----------WDECKDKL--NESGYSLSGGQQQRLCIAR 167
Query: 306 MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL--NGTAVI 348
+ + MDE + LD +T +I + +H L N T VI
Sbjct: 168 TIAIEPEVILMDEPCSALDPISTLKI----EETMHELKKNFTIVI 208
|
Length = 269 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 6e-05
Identities = 33/261 (12%), Positives = 77/261 (29%), Gaps = 27/261 (10%)
Query: 1168 NPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQP 1227
L+ L+FG G + + + V + V S
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1228 VVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMI---GFEWTAV 1284
A+ R + + S ++ F + +P++ V +++ G+++ + G +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1285 KFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIW 1344
+ + + ++ L A+ V SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1345 WRWYYWANPIAWTLYGLVASQFGDIDDTRLESGETVKQFLRSYFGFKHDFLGVIAAVHVA 1404
+ + NP+ + + LR + G+ ++ +
Sbjct: 228 LQGISYINPLTYAI-----------------------DALRYVYLGGWRNDGIWISL-LI 263
Query: 1405 FTVLFVFVFALGIKAFNFQRR 1425
+ V LG+ +R+
Sbjct: 264 LLLFAVVFLLLGLLLLRRRRK 284
|
Length = 286 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-05
Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 28/251 (11%)
Query: 796 STSQSLSLTEEDIAANQPKRSGMVL-PFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVL 854
+T +++E+DI R L P EP DV+ + + V++
Sbjct: 221 ATKDMSTMSEDDIITMMVGREITSLYPHEPH--EIGDVILEA---RNLTCWDVINPHRKR 275
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP-----KKQET 909
++ VS + R G + + G+ GAG+T L+ L G G + GN+ I+G P Q
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAI 334
Query: 910 FARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMEL------V 961
A I+ E H P + V +++ S + S +M ++ EL +
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSV-------LKSFCFKMRIDAAAELQIIGSAI 387
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
+ ++ + LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 388 QRLKVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1022 RNTVDTGRTVV 1032
G ++
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 60/247 (24%), Positives = 100/247 (40%), Gaps = 49/247 (19%)
Query: 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL-KLSGRVTYNGHNMDE-FVPQRT 196
D+N +K + L+G SGK+ LA+ G L P L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 197 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKA 256
A I Q+ T L F+ + + L L + K A +A
Sbjct: 64 IATIMQN-----PRTAFNPL-FTMGNHAIET----LRSLGKLSKQA------------RA 101
Query: 257 LATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFM 316
L E EA GL + + + +SGG +RV L+ L
Sbjct: 102 LILEALEAV----------GLPDPEEVL--KKYPFQLSGGMLQRVMIALALLLEPPFLIA 149
Query: 317 DEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL------FDDIILISEG 370
DE +T LD +++ LR++ L GT ++ + T+DL D++ ++ +G
Sbjct: 150 DEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLI------THDLGVVARIADEVAVMDDG 202
Query: 371 QIVFQGP 377
+IV +G
Sbjct: 203 RIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 37/242 (15%)
Query: 845 QGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKIS 901
Q +DD VS G + AL+G SG GK+TL+ +LAG + G + + +S
Sbjct: 32 QHAVDD-------VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS 84
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
P Q R Q+ P++TV +++ + P + +R + E++ LV
Sbjct: 85 HVPPYQ----RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLV 137
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
+ + LS QR+R+ +A L P ++ +DEP LD + + V
Sbjct: 138 HMQEFAKR-----KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 1022 RNTVD-TGRTVVCTIHQPSIDIFEAFD---ELFLMKRGGY-------EIYVGPLGRHSSH 1070
+ ++ G T V H D EA + +M RG + EIY P R+S+
Sbjct: 193 VDILERVGVTCVMVTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAE 248
Query: 1071 LI 1072
I
Sbjct: 249 FI 250
|
Length = 377 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNIKISGYPKK 906
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL--- 963
R G Q P +++E++ Y LR+ D +E + L
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDE 138
Query: 964 --NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+ L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 139 VKDRLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 8e-05
Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 51/258 (19%)
Query: 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ--RTAAYIS 201
V+P LLG +GKTT L G D ++ SG T G ++ + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTVT-SGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 202 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEG 261
Q D +T RE L AR +GV +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA---------------------------------- 2044
Query: 262 QEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEIST 321
+E V ++ I+ LGL + AD + G SGG +++++T L+G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 322 GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHV 381
G+D + ++ II G AV+ E L + ++ +G G +H+
Sbjct: 2100 GMDPQARRMLWNTIVSIIR--EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
Query: 382 LEFFK-----SMGFECPK 394
F +M + PK
Sbjct: 2158 KSKFGDGYIVTMKIKSPK 2175
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 42/280 (15%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLL---LALAGKLDPSLKLSGRVTYNGH 186
R T+L +N V L+GP SGK+T+L + L + +++ G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-- 66
Query: 187 NMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP 246
+P R + + H+ +M +G + + N+
Sbjct: 67 -----MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTE 110
Query: 247 DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
P V + +A E + ++ ++GL AD D M +SGGQ++RV
Sbjct: 111 AP---VLVLGMARAEAEKRAME--LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARA 160
Query: 307 L-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365
L + P + LF DE+++ LD +++ +R++ + T ++ + + D +
Sbjct: 161 LAMRPKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVC 218
Query: 366 LISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405
+G+IV QG + + F PK + +FL +V
Sbjct: 219 FFDKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1037 QPSI 1040
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDI 922
G LT ++G G GK++L+ + G + G + + K P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 923 HSP---NVTVYESLLYSAWLRLPPDVDSETRRMFLE--EIMELVELNPL-RQSLVGLPGV 976
P N TV E++ + + + + + + + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFGS------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 1034
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 1035 IHQ 1037
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 38/240 (15%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNIKIS--- 901
D K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 902 GYPKKQETFARISGYC------EQNDIHSPNVTVYESL-------------LYSA----- 937
GY ++ C E+ D + + + + LY
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 938 -WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 996
L ++ E + + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
P + DEPT LD + A +V + V +G ++V T H P + I + D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 52/194 (26%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAA------YISQHDV 205
LLGP +GK+T+ + G P +G++T + VP R + Q D
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPARARLARARIGVVPQFDN 124
Query: 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEAS 265
E TVRE L V RY +S RE +A I P + F +
Sbjct: 125 LDLEFTVRENLL-------VFGRY---FGMSTREIEAVI---PSLLEFAR---------- 161
Query: 266 VVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDS 325
L+ AD V D +SGG ++R+T L+ L +DE +TGLD
Sbjct: 162 -----------LESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
Query: 326 STTFQIVTSLRQII 339
I LR ++
Sbjct: 206 HARHLIWERLRSLL 219
|
Length = 340 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 54/221 (24%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
L DV+ ++ L GP +GKTTLL L G L PS G+V G +++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 196 TAAYISQH------DVHI-GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ + D + + TV E +A +G R E+ RR A
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
++ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 309 G-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348
P L L DE + LD + +I+ L++ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNKR-GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-04
Identities = 64/248 (25%), Positives = 100/248 (40%), Gaps = 41/248 (16%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
+L ++N +KP ++GP SGK+TL KL R+ + PQ
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-----------KLLQRL---------YTPQH 511
Query: 196 TAAYISQHDVHIGE-MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
+ D+ I + +R R GV + ++L S R+ A P + +
Sbjct: 512 GQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALAL 314
A G + L +T VG E +SGGQR+R+ LVG L
Sbjct: 565 HAAKLAGAHDFI--------SELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374
DE ++ LD + I+ ++R+I G VI + T D II++ +GQI
Sbjct: 616 IFDEATSALDYESEALIMRNMREICR---GRTVIIIAHRL-STVRACDRIIVLEKGQIAE 671
Query: 375 QGPREHVL 382
G E +L
Sbjct: 672 SGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 44/242 (18%)
Query: 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQ 202
++T L+G SGK+TLL L PS G + + ++ + + R AY+ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQ 92
Query: 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQ 262
MTVRE +A +G RY + AL G
Sbjct: 93 QLPAAEGMTVRELVA-------IG-RYP----------------------WHGALGRFGA 122
Query: 263 EASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTG 322
+ I ++GL A +V +SGG+R+R ++ + L +DE ++
Sbjct: 123 ADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
Query: 323 LDSSTTFQI-VTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHV 381
LD Q+ V +L + G VI++L D ++ + G+++ QG +
Sbjct: 178 LD--IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 382 LE 383
+
Sbjct: 236 MR 237
|
Length = 265 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 59/262 (22%)
Query: 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS-----LKLSGRVTYNGHNMDEFV 192
+DV+ + P + ++G SGK+TLL LAG+L P + + + E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 193 PQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+R ++ Q+ M V R +G+R+
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH------------------- 120
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+ AT D++ +V ++ + D++ R SGG ++R+ LV
Sbjct: 121 ----YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLV 164
Query: 309 -GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD------LF 361
P L +FMDE + GLD S +++ LR ++ L +I T+D L
Sbjct: 165 TRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARLLA 216
Query: 362 DDIILISEGQIVFQGPREHVLE 383
++++ +G++V G + VL+
Sbjct: 217 QRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
IL+ +N V+P + ++GP SGK+TL LAG+ D + G V + G ++ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLELSPE 73
Query: 195 RTA 197
A
Sbjct: 74 DRA 76
|
Length = 248 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
DT + + + R SGG+R+R+ +L+ A + +DE + GLD T Q+ L I +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL---LSLIFEV 144
Query: 342 LNGTAVISLLQPAPETYDL-----FDDIILISEGQIVFQG 376
L +I + T+ L D I+ + G+I+ QG
Sbjct: 145 LKDKTLIWI------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 50/197 (25%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
L ++N + +LT+++G GK++LLLA+ G++ L G+V ++ N E + T
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEAT 73
Query: 197 -------AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
AY +Q + TV E + F + RY + + + D ++ P D
Sbjct: 74 RSRNRYSVAYAAQKPWLL-NATVEENITFGSPFN--KQRYKAVTDACSLQPDIDLLPFGD 130
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGEML 307
T +G+ RGI SGGQR+R+ L
Sbjct: 131 --------------------------------QTEIGE---RGINLSGGQRQRICVARAL 155
Query: 308 VGPALALFMDEISTGLD 324
+F+D+ + LD
Sbjct: 156 YQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 29/225 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGNIKISGYPKKQET 909
++ VS + G + ++G SGAGKTTL ++AG T G + G+ + +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 910 FARISGYC----EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV--EL 963
R Y ++ D++ P+ TV ++L + L LP E RM +++V +
Sbjct: 360 RGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELP----DELARMKAVITLKMVGFDE 414
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +
Sbjct: 415 EKAEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTH 468
Query: 1024 TV-----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063
++ + +T + H + + D LM R G + +G
Sbjct: 469 SILKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 36/176 (20%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG---YPKKQETFA 911
L ++ + +TA++G SG GK+T + L + N+K++G Y
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTL---NLMIQMVPNVKLTGEMNYNGSNILKG 84
Query: 912 RIS--------GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME--LV 961
++ G Q P ++++++ Y P + + L+EI+E L
Sbjct: 85 KVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYG------PRIHGTKNKKKLQEIVEKSLK 137
Query: 962 EL-------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++ + L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 138 DVALWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-04
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
++LVG S LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 976 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1032 VCTIHQPSIDIFEAFDELFLMKR 1054
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 57/267 (21%), Positives = 110/267 (41%), Gaps = 50/267 (18%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE------ 190
L +VN ++ L+G SGK+TL+ L G L P+ SG++ +G ++ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 191 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI 250
+ ++ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEE-----EIENRVKRA-------- 126
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGP 310
+ ++GLD + D+ +SGGQ++RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370
L +DE + GLD +I+ +++ +H +I + + L D II++++G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIKE-LHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 371 QIVFQGPREHV---LEFFKSMGFECPK 394
+ QG V +E +S+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 38/171 (22%)
Query: 867 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNIKISGYPKKQETFARIS 914
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 915 GYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
++ PN +++E++ Y +R RR LEE +E N LR + +
Sbjct: 103 MVFQK-----PNPFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAAL 147
Query: 972 ------GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 148 WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 37/204 (18%), Positives = 58/204 (28%), Gaps = 69/204 (33%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIH 923
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 924 SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 984 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1035
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1036 HQPSI----DIFEAFDELFLMKRG 1055
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 48/170 (28%)
Query: 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPN 926
+TAL+G SG GK+T + L N I G+ + Y + DI+ P
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRM--------NDLIPGFRHEGHI------YLDGVDIYDPA 76
Query: 927 V---------------------TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL-- 963
V ++++++ Y LR+ + D + +EE ++ L
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 964 ---NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ L +S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 135 EVKDKLDKSALGLSG------GQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIKISGYPKKQE--- 908
L GVS +TAL+G SG GK+T + L R I G++++ G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 909 --TFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPPDVDSETRRMFL-----EEIM 958
+ G Q SPN ++ E++ Y R D+++ L +
Sbjct: 121 LVELRKRVGMVFQ----SPNPFPKSIRENISYGP--RKHGDINTGLLARLLGRDDKDAED 174
Query: 959 ELVELNPLRQSLVGLPGVS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
ELVE LRQ+ + V+ GLS Q++RL IA L +P +I MDEP S LD
Sbjct: 175 ELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
Query: 1011 ARAAA 1015
A +
Sbjct: 233 PIATS 237
|
Length = 305 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1037
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1038 PSIDIFEAF--DELFLMKRG 1055
D+ EA D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 25/193 (12%)
Query: 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYP-------K 905
+S + G + G+ G+G+T LM+ L G R G IS P K
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDAVK 337
Query: 906 KQETFA----RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
K + R +G+ I + N+ + SL + + E EL+
Sbjct: 338 KGMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL 396
Query: 962 EL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L + + Q++ L G Q+K L I+ L P +I DEPT G+D A A + +
Sbjct: 397 ALKCHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450
Query: 1020 TVRNTVDTGRTVV 1032
+R D G+ ++
Sbjct: 451 VMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 56/254 (22%), Positives = 92/254 (36%), Gaps = 66/254 (25%)
Query: 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTA---AYI 200
V+ + L+GP +GK+TLL +AG L SG + + G ++ + A AY+
Sbjct: 19 VRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 201 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATE 260
SQ M V + L
Sbjct: 75 SQQQTPPFAMPVFQYLTLH----------------------------------------- 93
Query: 261 GQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI---SGG--QRKRVTTGEMLVGPAL--- 312
Q T+ V L +V + D++ R + SGG QR R+ + V P +
Sbjct: 94 -QPDKTRTEAVASALN-EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPA 151
Query: 313 --ALFMDEISTGLDSSTTFQIVTSLRQIIHIL--NGTAVISLLQPAPETYDLFDDIILIS 368
L +DE LD + +L +++ L G AV+ T D + L+
Sbjct: 152 GQLLLLDEPMNSLDVAQ----QAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLK 207
Query: 369 EGQIVFQGPREHVL 382
+G+++ G R+ VL
Sbjct: 208 QGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGY 916
G G + ++G +G GKTT + +LAG + G ++K+S P+
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVSYKPQYISP------- 412
Query: 917 CEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGV 976
+ TV + LL SA + F EI++ + L L + V
Sbjct: 413 -------DYDGTVED-LLRSA------IRSAFGSSYFKTEIVKPLNLEDLLERPV----- 453
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 66/265 (24%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
LK +N + ++T L+GP GK+TLL L L +K++G++T +G ++ +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID- 77
Query: 195 RTAAYISQHDVHIG---------EMTVRETLAFSARCQGVGSR--YDMLVELSRREKDAN 243
++ + +G M++ E +A+ R QG+ + D +VE S R
Sbjct: 78 -----VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG---- 128
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
AL E V D + G+SGGQ++R+
Sbjct: 129 -----------AALWDE------VKDRL---------------KSHAFGLSGGQQQRLCI 156
Query: 304 GEMLVGPALALFMDEISTGLDSSTTFQI---VTSLRQIIHILNGTAVISLLQPAPETYD- 359
+ + MDE ++ LD T +I + L++ I+ V +Q A D
Sbjct: 157 ARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIV---IVTHSMQQARRISDR 213
Query: 360 ----LFDDIILISEGQIVFQGPREH 380
L +++ + Q++F P++
Sbjct: 214 TAFFLMGELVEHDDTQVIFSNPKDD 238
|
Length = 249 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 50/262 (19%), Positives = 104/262 (39%), Gaps = 42/262 (16%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH---NMDEFVP 193
L D+N ++ +++T L+G GK+T L D K+ G V G N D
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
++ + Q ++ ++ E ++++ + G+
Sbjct: 78 RKNVGMVFQQP-NVFVKSIYENISYAPKLHGM---------------------------- 108
Query: 254 MKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA 313
+ + +E ++V D + KV + D + + + +SGGQ++R+ L
Sbjct: 109 ---IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKL 163
Query: 314 LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-----FDDIILIS 368
L +DE ++ LD ++ I L+++ H L+ V +Q D ++I
Sbjct: 164 LLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFG 223
Query: 369 EGQIVFQGPREHVLEFFKSMGF 390
E + F+ P++ + + S F
Sbjct: 224 ESKEFFENPKQEKTKAYLSGAF 245
|
Length = 246 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 49/164 (29%)
Query: 88 VRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPS 147
+ E+++ Y GG + + +F LKDV+
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLG------------ILGRKGEVGEFWALKDVS------ 42
Query: 148 RLTL-------LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYI 200
+ L+G +GK+TLL LAG P SG VT G R ++ +
Sbjct: 43 -FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG---------RVSSLL 89
Query: 201 SQHDVHIG---EMTVRETLAFSARCQG-----VGSRYDMLVELS 236
+ G E+T RE + + R G + + D ++E S
Sbjct: 90 ---GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFS 130
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 826 SLTFEDVV--YSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 883
S+ FEDV Y +P +L+G+S P ++G +GAGK+++++
Sbjct: 1234 SIKFEDVHLRYRPGLPP-------------VLHGLSFFVSPSEKVGVVGRTGAGKSSMLN 1280
Query: 884 VLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
L + G I I ++ + + ++ +L+S +R
Sbjct: 1281 ALF--RIVELEKGRIMIDDCD--------VAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330
Query: 944 DVDSETRRMFLEEIMELVEL-NPLRQSLVGL-----PGVSGLSTEQRKRLTIAVELVANP 997
D SE L E +E + + + ++ GL G S QR+ L++A L+
Sbjct: 1331 DPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390
Query: 998 SIIFMDEPTSGLDARAAAIVMRTVR 1022
I+ +DE T+ +D R +++ RT+R
Sbjct: 1391 KILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQET---FA 911
LNGVS + G +++G +G+GK+T ++ G G +KI G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 912 RISGYCEQN-DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R G QN D TV + + + E + + EE+++ V+ L ++
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGM----------ENQGIPREEMIKRVDEALLAVNM 130
Query: 971 VGLPG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
+ + LS Q++R+ +A + P II +DE TS LD +MR + +
Sbjct: 131 LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ V +I +D + D + +MK G
Sbjct: 191 QLTVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 35/216 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNIKISGYPKKQETFAR 912
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 913 ISGYC---EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL------ 963
+ QN +H N T+ ++ Y+ + +R E+I E +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-------TEQYSR----EQIEEAARMAYAMDF 462
Query: 964 -NPLRQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
N + L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 463 INKMDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ + + RT + H+ S E DE+ +++ G
Sbjct: 522 AL-DELQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 56/259 (21%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
K L+ ++ ++ ++GP SGK+TL + G P+ SG V +G ++ ++
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWD 386
Query: 193 PQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
+ + Y+ Q DV + TV E +A R ++A DP+
Sbjct: 387 RETFGKHIGYLPQ-DVELFPGTVAENIA-------------------RFGENA----DPE 422
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGEML 307
+ EA+ + +L L DT++G G SGGQR+R+ L
Sbjct: 423 KII----------EAAKLAGVHELILRLPDGYDTVIGP---GGATLSGGQRQRIALARAL 469
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQI----IHILNGTAVISLLQPAPETYDLFDD 363
G + +DE ++ LD + +++ + I ++ T SLL D
Sbjct: 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-------DK 522
Query: 364 IILISEGQIVFQGPREHVL 382
I+++ +G+I G R+ VL
Sbjct: 523 ILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 55/263 (20%), Positives = 101/263 (38%), Gaps = 71/263 (26%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF---- 191
IL ++ + + ++G +GK+T+L L D + SG +T +G ++ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 192 -------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
VPQ T + T+ + + R + + E
Sbjct: 335 LRRAIGIVPQDTVLFND---------TIAYNIKY-GR-----------PDATAEEV---- 369
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
A A Q + L DT VG+ L+ +SGG+++RV
Sbjct: 370 ----------GAAAEAAQIHDFIQS-------LPEGYDTGVGERGLK-LSGGEKQRVAIA 411
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPETYD 359
++ L +DE ++ LD+ T I +LR++ T ++ S + A
Sbjct: 412 RTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIIDA----- 464
Query: 360 LFDDIILISEGQIVFQGPREHVL 382
D+II++ G+IV +G E +L
Sbjct: 465 --DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 49/195 (25%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ- 194
IL +++ V+ + GP GK+TLL +A + P+ SG + + G ++ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 195 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+ +Y +Q G+ TV + L F + + N +PD
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQIR-------------------NRRPDRAA-- 112
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML-VGPA 311
+ LA S++T + + +SGG+++R+ L P
Sbjct: 113 ALDLLARFALPDSILTKNITE-------------------LSGGEKQRIALIRNLQFMPK 153
Query: 312 LALFMDEISTGLDSS 326
+ L +DEI++ LD S
Sbjct: 154 I-LLLDEITSALDES 167
|
Length = 223 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+LK+++ +K LLG SGK+TLL L G L P G +T +G + +
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKA 72
Query: 195 RTAAYIS--QHDVHIGEMTVRETL 216
++ IS ++ + T+R L
Sbjct: 73 L-SSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 50/215 (23%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L +S +F PG ++G++GAGK+TL+ ++AG + +G +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEARPAPGIKV- 70
Query: 914 SGYCEQNDIHSPNVTVYE-------------------SLLYSAWLRLPPDVDSE---TRR 951
GY Q P TV E S ++ PD D + +
Sbjct: 71 -GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE-----PDADMDALLAEQ 124
Query: 952 MFLEEIMELVELNPLRQSL------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIF 1001
L+EI++ + L + L + P V+ LS +R+R+ + L++ P ++
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLL 184
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
+DEPT+ LDA + A + + ++ G TVV H
Sbjct: 185 LDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 33/162 (20%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFA 911
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 912 RISGYCEQN---DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
RI GY Q D P L + +LRL P E L+ +
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGTKKEDILPALKRVQA--------G 111
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPKKQETFA 911
LN S F+ +T ++G +G+GK+T++ + G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 912 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
R+ G Q P +++ + P ++ + + +++ EL++L L +
Sbjct: 87 RLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAY-KKVPELLKLVQLPE 141
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT 1027
V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++ H + DE+ +M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 969 SLVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1023 NTVDTGRTVVCTIH 1036
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 52/226 (23%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISGYPKKQETFA 911
L V+ G TA +G +G+GK+T+M +L G G + I+ K +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK---- 78
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP------ 965
DI V L++ + P ++F E +++ V P
Sbjct: 79 ---------DIKQIRKKV--GLVF----QFPES------QLFEETVLKDVAFGPQNFGVS 117
Query: 966 -------LRQSLVGLPGVSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
R+ L L G+S LS Q +R+ IA L P I+ +DEPT+GL
Sbjct: 118 QEEAEALAREKLA-LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
D + +M + +G T+V H D+ D ++++++G
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-04
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 28/117 (23%)
Query: 271 VIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA-----LFMDEISTGLDS 325
+++LGL AD + +SGG+R+RV L+ ALA L +DE ++ LD
Sbjct: 81 ALELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDI 130
Query: 326 STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL------FDDIILISEGQIVFQG 376
+ +++ LR++ T V+ L +DL D +IL+ +G+IV QG
Sbjct: 131 AHQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 50/253 (19%), Positives = 98/253 (38%), Gaps = 50/253 (19%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF----- 191
+ D + + + +++G SGK+T + L ++P+ +G++ +G N+ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 192 --VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
V ++ + Q MT+ + + G E R+EK
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWP-------EQERKEK--------- 109
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
A E ++K++GL+ DE+ SGG ++RV L
Sbjct: 110 --------ALE----------LLKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 310 PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369
L MDE + LD + L+++ L T ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT-IVFITHDLDEAIRIGDRIVIMKA 205
Query: 370 GQIVFQGPREHVL 382
G+IV G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 58/267 (21%), Positives = 104/267 (38%), Gaps = 57/267 (21%)
Query: 145 KPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHN-----MDEFVPQRTA 197
+ LT L+GP GK+T L L D ++K++G + + G N MD ++
Sbjct: 28 EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEV 87
Query: 198 AYISQHDVHIGEMTVRETLAFSARCQGVGSR--YDMLVELSRREKDANIKPDPDIDVFMK 255
+ Q +V + +A+ + GV + D VE S ++
Sbjct: 88 GMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQA--------------- 131
Query: 256 ALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALF 315
A+ E ++ LD A + SGGQ++R+ L +
Sbjct: 132 AIWKETKD------------NLDRNA---------QAFSGGQQQRICIARALAVRPKVVL 170
Query: 316 MDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQ 375
+DE ++ LD ++ +I +L ++ H V LQ A + D + G ++
Sbjct: 171 LDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIEA 227
Query: 376 GPREHVLEFFKSMGFECPKRKGVADFL 402
GP E + F PK++ +D+L
Sbjct: 228 GPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 38/175 (21%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNIKISGYPKKQETF 910
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 911 ARIS-GYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
R QN S P V + L L + + + RR +M V
Sbjct: 90 LRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKV------ 141
Query: 968 QSLVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 1010
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ----------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1026 DTGRTVVCTIHQPSIDIF 1043
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 29/166 (17%)
Query: 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNIKISGYPKKQETFARISGY 916
G+ + ++G +G GKTT + +LAG G +S Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-Y-KPQYIKADYEG- 76
Query: 917 CEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGV 976
TV + LL S D T F EI + +++ + V
Sbjct: 77 -----------TVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 54/203 (26%)
Query: 838 MPQEMKLQGV--LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 895
M ++K++GV K +L ++ F +TA++G SG GK+TL+ L + ++
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVS 58
Query: 896 GNIKISGYPKKQETFARISG--YCEQNDIHSPNVTVYE-----SLLYSAWLRLP------ 942
G AR+ G + +I+SPN+ V +++ P
Sbjct: 59 G--------------ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDN 104
Query: 943 ----PDVDSETRRMFLEEIMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRL 987
P + T + L+E++E LRQ+ + GL LS Q++RL
Sbjct: 105 VAFGPRMLGTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRL 156
Query: 988 TIAVELVANPSIIFMDEPTSGLD 1010
IA L P +I MDEP S LD
Sbjct: 157 CIARVLAIEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 69/194 (35%)
Query: 867 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQ 919
+TA +G SG GK+T + D + K + G + I G
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGI---------------- 72
Query: 920 NDIHSPNVTV---------------------YESLLYSAWL--------RLPPDVDSETR 950
D++S + V Y+++ Y L +L V+
Sbjct: 73 -DVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLT 131
Query: 951 RMFL-EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+ L EE+ + ++ + LS Q++RL IA + P+++ MDEP S L
Sbjct: 132 SVGLWEELGDRLKDSAFE-----------LSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 1010 DARAAAIVMRTVRN 1023
D A ++ ++
Sbjct: 181 DPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 55/274 (20%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHN--- 187
KF LK ++ + +T L+GP GK+T L L L P + ++G V+ G N
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 188 --MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
D ++ + Q ++ E + + R GV
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV-------------------- 115
Query: 246 PDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGE 305
D V +A+ T ++A++ + + E +SGGQ++RV
Sbjct: 116 --KDKAVLDEAVETSLKQAAIWDEVKDHL------------HESALSLSGGQQQRVCIAR 161
Query: 306 MLVGPALALFMDEISTGLDSSTTFQI---VTSLRQ------IIHILNGTAVISLLQPAPE 356
+L + +DE ++ LD ++ QI + LR + H ++ + IS
Sbjct: 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRIS----DKT 217
Query: 357 TYDLFDDIILISEGQIVFQGPREHVLEFFKSMGF 390
+ L ++I ++ + +F P+E E + + F
Sbjct: 218 AFFLTGNLIEFADTKQMFLNPKEKETEDYITGRF 251
|
Length = 252 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+
Sbjct: 467 DTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMK 524
Query: 1028 GRTVVCTIHQ 1037
GRT + H+
Sbjct: 525 GRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 24/203 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L +S G ++G +GAGK+TL+ ++AG + T +G +K++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
++ E P +T E++ + E +EI+E EL +
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRG--LILGLTRKEIDEKV-DEIIEFAEL----GDFID 142
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
P V S+ RL +V P I+ +DE + DA + + V+ +T+V
Sbjct: 143 QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 1033 CTIHQPSIDIFEAFDELFLMKRG 1055
H I + D ++ G
Sbjct: 202 LVSHDLGA-IKQYCDRAIWLEHG 223
|
Length = 249 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985
N+++YE++ + DV + ++E +E L + VG G S LS Q++
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQ 1365
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1037
R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 870 LMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY---------PKKQETFARISGYCEQN 920
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 921 DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG-- 978
P++TV ++L+ + P V ++ L +L L LR L +
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKL--LERLR-----LKPYADRF 138
Query: 979 ---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198
Query: 1036 HQ 1037
H+
Sbjct: 199 HE 200
|
Length = 242 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 55/190 (28%), Positives = 78/190 (41%), Gaps = 60/190 (31%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNIKISGYPKKQETFARI 913
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 914 SGYCE----------QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-- 961
E QN P+++V E++ Y L++ R M EI E V
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYG--LKI--------RGMPKAEIEERVAE 117
Query: 962 -----ELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
EL PL R+ LS QR+R+ + +V P++ DEP S LDA
Sbjct: 118 AARILELEPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
Query: 1012 --RAAAIVMR 1019
R MR
Sbjct: 168 KLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 44/215 (20%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLK-LSGRVTYNGHNMDEFV 192
ILK +N + + ++GP SGK+TL +AG P+ K L G + + G ++ +
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILFKGESILDLE 77
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQ--GVGSRYDML-VELSRREKDANIKPDPD 249
P+ A H+G LAF + GV S D L + + + K P+ D
Sbjct: 78 PEERA--------HLGIF-----LAFQYPIEIPGV-SNADFLRLAYNSKRKFQG-LPELD 122
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM-LV 308
F++ + + +K++G+D + + + G SGG++KR +M L+
Sbjct: 123 PLEFLEIINEK-----------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALL 168
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343
LA+ +DE +GLD + +L+ I +N
Sbjct: 169 DSELAI-LDETDSGLD-------IDALKIIAEGIN 195
|
Length = 252 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-04
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
+LK ++ V+ + +++GP SGK+TLL L G +P SG +T +G +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGED 65
|
Length = 240 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 44/228 (19%)
Query: 150 TLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIG 208
T ++GP SGK+TLL +AG P SGRV NG ++ P R + + Q +
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVT 268
+TV + + G+ + E R+ + K L E
Sbjct: 84 HLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE-------- 128
Query: 269 DYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTT 328
+SGG+R+RV +LV L +DE LD +
Sbjct: 129 ------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 329 FQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376
++ L +H V+ + + L ++ + G+I QG
Sbjct: 165 AEM-LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 31/104 (29%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193
F L D++ V P L +++GP +GKTT++ + GK P G V + G +
Sbjct: 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTD------ 65
Query: 194 QRTAAYISQHDVH------IG----------EMTVRETLAFSAR 221
++ H IG +TV E L +
Sbjct: 66 ------LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG---HNMD 189
+ +IL V +VK L+G SGK+TLL LAG D S SG V+ G H MD
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMD 78
Query: 190 E 190
E
Sbjct: 79 E 79
|
Length = 228 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 287 DEMLRGISGGQRKRVTTGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGT 345
D++ R SGG ++R+ LV P L +FMDE + GLD S +++ LR ++ L
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVRELGLA 204
Query: 346 AVISLLQPAPETYDLF------DDIILISEGQIVFQGPREHVLE 383
VI T+DL D ++++ +GQ+V G + VL+
Sbjct: 205 VVIV-------THDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
K +LK V+ + + ++G SGK+TLL L G +P+ SG V +NG ++
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 66/217 (30%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNMDEF 191
F LK +N ++ +++T L+GP GK+T L L L PS+K+ G V +G ++
Sbjct: 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI--- 72
Query: 192 VPQRTAAYISQHDV-----HIG---------EMTVRETLAFSARCQGVGSR--YDMLVEL 235
Y S DV +G M++ + +A+ R G+ + D +VE
Sbjct: 73 -------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEK 125
Query: 236 SRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIK-VLGLDVCADTMVGDEMLRGIS 294
S + AL E V D + K LGL S
Sbjct: 126 SLKG---------------AALWDE------VKDRLKKSALGL----------------S 148
Query: 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQI 331
GGQ++R+ L L MDE ++ LD +T +I
Sbjct: 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPKKQET 909
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 910 FARISGYCEQNDIHSPNV---TVYESLLYSAWLR-LPPDVDSETRRMFLEEIMEL-VELN 964
+ + YC Q +P + TVY++L++ +R PD +FL+++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L ++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+SGGQ++RV L L DE ++ LD +TT I+ L++I L T ++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITH 199
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQ 412
+ D + +IS G+++ QG + F PK F++ +
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQGTVSEI--------FSHPKTPLAQKFIRSTLHLSIPE 251
Query: 413 QYWVR-KEEPY 422
Y R + P+
Sbjct: 252 DYQERLQATPF 262
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 55/254 (21%)
Query: 132 KKF---TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
K+F T++ ++N +K + LLGP GKTT+L +AG P+ G++ +G ++
Sbjct: 14 KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDV 70
Query: 189 -DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+ QR + Q M++ E + + + GV E +R K+A
Sbjct: 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKE-----ERKQRVKEA----- 120
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
++++ L D V D+ ISGGQ++RV L
Sbjct: 121 ------------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARAL 151
Query: 308 V-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL---QPAPETYDLFDD 363
+ P + LF DE + LD++ + S+R+ I L I+ L E + + D
Sbjct: 152 ILKPKVLLF-DEPLSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDT 206
Query: 364 IILISEGQIVFQGP 377
+I++++G+I+ G
Sbjct: 207 VIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM----DEFVPQRTAAY 199
+ L + GP +GKT+LL LAG P +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 200 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDML-----VELSRRE 239
+ E+T E L F R G G + V L+ E
Sbjct: 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE 123
|
Length = 204 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 48/171 (28%)
Query: 865 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISG---YPKK---QETFA 911
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 912 RISGYCEQNDIHSPN---VTVYESLLYSAWLR-LPPDVDSETRRMFLEEIMELVELNPLR 967
RI +Q PN ++YE++ + A + D+D ELVE LR
Sbjct: 95 RIGMVFQQ-----PNPFPKSIYENIAFGARINGYTGDMD------------ELVE-RSLR 136
Query: 968 QSLV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++ V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 137 KAAVWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLL--LALAGKLDPSLKLSGRVTYNGHNM----DE 190
LK++N + + +T ++GP GK+T + L L ++ P++KL+G + YNG N+ +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 191 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI 250
V R + + ++ + +A+ R G ++ + + + KD
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDV-------- 139
Query: 251 DVFMKALATEGQEASVVTDYV-IKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
AL E V D + + L L SGGQ++R+ L
Sbjct: 140 -----ALWDE------VKDRLHTQALSL----------------SGGQQQRLCIARALAT 172
Query: 310 PALALFMDEISTGLDSSTTFQI 331
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 64/258 (24%), Positives = 99/258 (38%), Gaps = 68/258 (26%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP----SLKLSGRVTYNGHNMDEFV 192
L D+N + L ++G GKT+L+ A+ G+L S+ + G V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
PQ + I TVRE + F + + RY ++++ + D ++ P D+
Sbjct: 685 PQVS---------WIFNATVRENILFGSDFES--ERYWRAIDVTALQHDLDLLPGRDL-- 731
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
TE E V ISGGQ++RV+ + +
Sbjct: 732 ------TEIGERGV-------------------------NISGGQKQRVSMARAVYSNSD 760
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA---VISLLQPAPETYDLFDDIILISE 369
D+ + LD+ Q+ S + L G V + L P L D IIL+SE
Sbjct: 761 IYIFDDPLSALDAHVAHQVFDSC--MKDELKGKTRVLVTNQLHFLP----LMDRIILVSE 814
Query: 370 GQIVFQGPREHVLEFFKS 387
G I +G E KS
Sbjct: 815 GMIKEEGTFA---ELSKS 829
|
Length = 1495 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 123 CLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS---LKLSG 179
CL P +LK++N ++ + + G SGKT+LL+ + G+L+PS +K SG
Sbjct: 46 CLVGAP-------VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 180 RVTY 183
R+++
Sbjct: 99 RISF 102
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 48/229 (20%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIG 208
L+GP +GKT+LL AL G L G + NG + E P+ + +++ Q + +
Sbjct: 381 LVGPSGAGKTSLLNALLG----FLPYQGSLKINGIELRELDPESWRKHLSWVGQ-NPQLP 435
Query: 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVT 268
T+R+ + PD + +AL E + V+
Sbjct: 436 HGTLRDNVLLG-------------------------NPDASDEQLQQAL-----ENAWVS 465
Query: 269 DYVIKV-LGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSST 327
+++ + GLD T +GD+ G+S GQ +R+ L+ P L +DE + LD+ +
Sbjct: 466 EFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 328 TFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376
++ +L V L+ + +D I ++ +GQIV QG
Sbjct: 521 EQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 53/243 (21%), Positives = 83/243 (34%), Gaps = 64/243 (26%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTA---AYISQHDVHIG 208
L+GP +GK+TLL +AG SG + + G ++ + A AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGM----TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF 85
Query: 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVT 268
M V L +PD K
Sbjct: 86 AMPVWHYLTLH-------------------------QPD-------KTRTEL-------L 106
Query: 269 DYVIKVLGLDVCADTMVGDEMLRGISGG--QRKRVTTGEMLVGPAL-----ALFMDEIST 321
+ V L LD D + +SGG QR R+ + + P L +DE
Sbjct: 107 NDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161
Query: 322 GLDSSTTFQIVTSLRQIIHIL--NGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPRE 379
LD + ++L +++ L G A++ T L+ G+++ G RE
Sbjct: 162 SLDVAQQ----SALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRRE 217
Query: 380 HVL 382
VL
Sbjct: 218 EVL 220
|
Length = 248 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 52/219 (23%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNM--- 188
F LK ++ ++ + +GP GK+T L L P+ +L G + +G N+
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75
Query: 189 ----DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
DE ++ + Q + ++ E +A+ R GV KD
Sbjct: 76 GVQVDEL--RKNVGMVFQRPNPFPK-SIFENVAYGLRVNGV--------------KDNA- 117
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
F++ E + + + D V L E +SGGQ++R+
Sbjct: 118 --------FIRQRVEETLKGAALWDEVKDKL-----------KESAFALSGGQQQRLCIA 158
Query: 305 E-MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL 342
M V P++ L MDE ++ LD +T ++ ++IH L
Sbjct: 159 RAMAVSPSV-LLMDEPASALDPISTAKV----EELIHEL 192
|
Length = 250 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 62/270 (22%), Positives = 99/270 (36%), Gaps = 85/270 (31%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211
+LGP GKTT + LAG + P + + + PQ YIS
Sbjct: 372 ILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS------YKPQ----YIS---------- 411
Query: 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYV 271
YD VE D+ A+ + + T+ +
Sbjct: 412 ---------------PDYDGTVE----------------DLLRSAIRSAFGSSYFKTE-I 439
Query: 272 IKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQI 331
+K L L+ D + + + +SGG+ +RV L A +DE S LD +
Sbjct: 440 VKPLNLE---DLL--ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 332 VTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI---SEGQIVFQG-PREHVLEFFKS 387
+R+ I TA++ + DI +I S+ IVF+G P +H
Sbjct: 495 AKVIRRFIENNEKTALV-----------VDHDIYMIDYVSDRLIVFEGEPGKH------- 536
Query: 388 MGFECP---KRKGVADFLQE--VTSKKDQQ 412
G P R+G+ FL+ VT ++D +
Sbjct: 537 -GHASPPMSMREGMNRFLKNLGVTFRRDPE 565
|
Length = 591 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 294 SGGQRKRVTTGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQI--------IHILNG 344
SGGQR+R+ L+ P L L +DE ++ LD S Q++ LR + + I +
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 345 TAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383
AV+ L +I++ +G+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 60/262 (22%), Positives = 101/262 (38%), Gaps = 55/262 (20%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHN---- 187
F L D++ + +++T L+GP GK+T L L L P ++ G + +G N
Sbjct: 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78
Query: 188 -MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP 246
+D +R + Q + ++ E +A+ R GV + + + R + A
Sbjct: 79 HVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHA---- 133
Query: 247 DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
AL E V D + E G+SGGQ++R+
Sbjct: 134 ---------ALWDE------VKDRL---------------HESALGLSGGQQQRLCIARA 163
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL----LQPAPETYDL-- 360
L L MDE ++ LD T +I ++IH L I + +Q A D+
Sbjct: 164 LAVEPEVLLMDEPASALDPIATQKI----EELIHELKARYTIIIVTHNMQQAARVSDVTA 219
Query: 361 ---FDDIILISEGQIVFQGPRE 379
+I + + +F PRE
Sbjct: 220 FFYMGKLIEVGPTEQIFTRPRE 241
|
Length = 253 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
+ +F LKD++ + ++G +GK+TLL +AG P+ SG+V G
Sbjct: 35 RKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTG--- 88
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 224
+ A I E+T RE + G
Sbjct: 89 ------KVAPLIELGAGFDPELTGRENIYLRGLILG 118
|
Length = 249 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 76/312 (24%), Positives = 124/312 (39%), Gaps = 55/312 (17%)
Query: 778 SSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVD 837
S +TQ E+R + S+ EE A+ P+ + E F + + +
Sbjct: 293 SGFITQIFEARAKLEDFFDLEDSVFQREE--PADAPELPNVKGAVE-----FRHITF--E 343
Query: 838 MPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 897
QGV D VS + G A++G +GAGKTTL+++L ++ G
Sbjct: 344 FANSS--QGVFD--------VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQ 391
Query: 898 IKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL-LYSAWLRLPPDVDSETRRMFLEE 956
I I G T + + TV++ L++ +R + E EE
Sbjct: 392 ILIDGIDINTVT---------RESLRKSIATVFQDAGLFNRSIRENIRLGREGAT--DEE 440
Query: 957 IMELVELNPLRQ----------SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006
+ E + +LVG G + LS +R+RL IA ++ N I+ +DE T
Sbjct: 441 VYEAAKAAAAHDFILKRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEAT 499
Query: 1007 SGLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSI----DIFEAFDELFLMKRGGYEI 1059
S LD A V+N +D RT H+ S D+ D+ L+++G ++
Sbjct: 500 SALDVETEA----RVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555
Query: 1060 YVGPLGRHSSHL 1071
+ GR L
Sbjct: 556 LIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1037
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1038 PSIDIFEAFDELFLMKRGGYE 1058
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 55/202 (27%), Positives = 82/202 (40%), Gaps = 51/202 (25%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR 912
VLL VS + G LT ++G +G+GK+TL+ L +IS + +A
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL---------LSQFEIS----EGRVWAE 720
Query: 913 IS-GYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE----IMELVELNPL 966
S Y Q I N TV ++L+ F EE + + V ++ L
Sbjct: 721 RSIAYVPQQAWIM--NATVRGNILF-----------------FDEEDAARLADAVRVSQL 761
Query: 967 RQSLVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
L L G GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 762 EADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQ 1037
V+ G+T V HQ
Sbjct: 820 RVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 30/226 (13%)
Query: 824 PLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 883
P L +V + + Q+ GV +L +L VS + G L G SG+GK+TL+
Sbjct: 2 PTPLNVSNVSKTFTLHQQ---GGV---RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLR 55
Query: 884 VLAG--RKTGGYIT-----GNIKISGYPKKQ--ETFARISGYCEQNDIHSPNVT----VY 930
L G I + + ++ E GY Q P V+ V
Sbjct: 56 SLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVA 115
Query: 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 990
E LL P +V L LN L + L L + S +++R+ IA
Sbjct: 116 EPLLARGV---PREVARAKAADLLTR------LN-LPERLWSLAP-ATFSGGEQQRVNIA 164
Query: 991 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
+ + I+ +DEPT+ LDA A+V+ +R G +V H
Sbjct: 165 RGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185
+L++V+ ++P ++GP SGK+TL + G L P+ SGRV +G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDG 63
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 46/183 (25%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYITGNIKISG-----YPK 905
+ G+S G AL+G SG+GK+ +++ +L + +G+I G +
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 906 KQETFARISGYCEQNDIH----------SPNVTVYESLLYSAWLRLPPDVDSETRRMFLE 955
+Q + G N I +P T+ L LRL + R
Sbjct: 85 RQ--LRGVRG----NKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLSRAAAR---A 133
Query: 956 EIMELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTS 1007
+EL+EL VG+P LS QR+R+ IA+ L P ++ DEPT+
Sbjct: 134 RALELLEL-------VGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTT 186
Query: 1008 GLD 1010
LD
Sbjct: 187 ALD 189
|
Length = 534 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 6/222 (2%)
Query: 480 RELLLMKRNSFVYIFKLIQLTITGVISMTLFFR-TKMHRDSVTNGGIYVGALFFTIIMIT 538
E ++ S + I ++ L I G++ +++ S + + I+M
Sbjct: 40 LEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSV 99
Query: 539 FNGMAELSMSIAKLPVFYKQRDLRFY---PAWAYGLPTWILKVPIAFVEVAVWVILNYYV 595
S + + L + + +A + + +++ ++
Sbjct: 100 LFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFL 159
Query: 596 IGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAA-TGRSMVVANTFGSFAMLVLFALGGFV 654
+G LLL+L+ + L L++ + A+ G+ +L L L G
Sbjct: 160 LGVPFLGS-LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVF 218
Query: 655 LSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPN 696
E + W + + +PL YA + L G + +
Sbjct: 219 FPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRNDGIWIS 260
|
Length = 286 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYC 917
+S R G A++G +G+GK+TL +LAG +G + I +P ++ S
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDYSYRSQRI 89
Query: 918 E---QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974
Q+ S N S + LRL D++ E R + E + V L P S P
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY--YP 147
Query: 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ L+ Q++RL +A L+ P +I DE + LD
Sbjct: 148 HM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK--KQETF-A 911
+ G+S +TA++G SG GK+T + L + G +K+ G Q +
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDP 79
Query: 912 RISGYCEQNDI----HSPN---VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV--- 961
RI+ + I PN +++YE++ Y + ++ + L+EI+E
Sbjct: 80 RININRLRRQIGMVFQRPNPFPMSIYENVAYGV------RISAKLPQADLDEIVESALKG 133
Query: 962 -----EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
E+ + L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 134 AALWQEVKDKLNKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATM 187
Query: 1016 IV 1017
V
Sbjct: 188 KV 189
|
Length = 259 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
Query: 867 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNIKISGYPKKQETFARISGYC 917
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 918 EQNDIHSPN---VTVYESLLYSAWLR-LPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
Q PN ++Y+++ Y A + D+D R + + + L+QS
Sbjct: 97 FQK----PNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQS---- 148
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 149 -GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 31/116 (26%)
Query: 288 EMLR----GISGGQRKRVTTGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL 342
+ LR G SGG++KR ++L+ P LA+ DE +GLD + +LR + ++
Sbjct: 96 DFLRYVNEGFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLD-------IDALRLVAEVI 147
Query: 343 N-------GTAVISLLQPAPETYDLFDDII-----LISEGQIVFQGPREHVLEFFK 386
N +I+ Q L D I ++ +G+IV G +E LE K
Sbjct: 148 NKLREEGKSVLIITHYQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 60/272 (22%), Positives = 104/272 (38%), Gaps = 61/272 (22%)
Query: 124 LHILPSRKKKFT------ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL 177
+H++ +R ++ L ++N I + ++GP +GK+TL G L P+
Sbjct: 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT--- 57
Query: 178 SGRVTYNGH-----NMDEFVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDM 231
SG V G N+ E ++ + Q+ D I TV + +AF G
Sbjct: 58 SGSVLIRGEPITKENIREV--RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG------- 108
Query: 232 LVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291
L E V + +LGL+ + D +
Sbjct: 109 -------------------------LDEETVAHRV--SSALHMLGLE-----ELRDRVPH 136
Query: 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL- 350
+SGG++KRV ++ L +DE + GLD +++ L + T + S
Sbjct: 137 HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTH 196
Query: 351 -LQPAPETYDLFDDIILISEGQIVFQGPREHV 381
L PE + D I ++ +G+IV G E +
Sbjct: 197 QLDLVPE---MADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 57/216 (26%), Positives = 89/216 (41%), Gaps = 44/216 (20%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNIKIS 901
D K LN +S + G TAL+G +G+GK+T+ ++ G + I +
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVD 70
Query: 902 GYPKKQETFARIS---GYCEQN-DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI 957
G +T I G QN D TV + + + E R + E+
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL----------ENRAVPRPEM 120
Query: 958 MELVELNPLRQSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+++V + L VG+ P + LS Q++R+ IA L P II +DE TS LD
Sbjct: 121 IKIVR-DVLAD--VGMLDYIDSEP--ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
Query: 1011 ARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEA 1045
+++ +R TV+ H DI EA
Sbjct: 176 PAGKEQILKLIRKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 60/266 (22%), Positives = 100/266 (37%), Gaps = 61/266 (22%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLAL--AGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
L D+ + +R+T L+GP GK+TLL L P +++G + YNG N+ +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD---- 77
Query: 195 RTAAYISQHDVHIGEM---------TVRETLAFSARCQGVGSR--YDMLVELSRREKDAN 243
+ A + IG + ++ E +A+ R G ++ D +VE S +
Sbjct: 78 -SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKG---- 132
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
AL E V D + + +SGGQ++R+
Sbjct: 133 -----------AALWDE------VKDRL---------------HDSALSLSGGQQQRLCI 160
Query: 304 GEML-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-- 360
L V P + L MDE + LD T +I + + V +Q A D
Sbjct: 161 ARTLAVNPEVIL-MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTG 219
Query: 361 ---FDDIILISEGQIVFQGPREHVLE 383
+I + +F+ P E + E
Sbjct: 220 FMYLGKLIEFDKTTQIFENPHEELTE 245
|
Length = 253 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+SGGQ +++ +L + +DE + GLD + Q++ L+ + +I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS-LQTDENKTIILVSH 204
Query: 353 PAPETYDLFDDIILISEGQIVFQG-PRE 379
E D++I++ EG IV Q P+E
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 293 ISGGQRKRVTTGEML-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA---VI 348
+SGGQ++RV +L + P + +F DE ++ LD +I +I+ L T +I
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIF-DESTSMLDPKGKREIK----KIMVDLRKTRKKTLI 197
Query: 349 SLLQPAPETYD-----LFDDIILISEGQIVFQGPREHVL---EFFKSMGFECPKRKGVAD 400
S+ T+D L D +I+ SEG+++ QG + +L E + + P ++
Sbjct: 198 SI------THDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSK 251
Query: 401 FLQEVTSKKDQQQ 413
L+ + ++++
Sbjct: 252 KLKGIDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 53/263 (20%), Positives = 108/263 (41%), Gaps = 62/263 (23%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG---HNMDEFV 192
ILKD++ + + ++GP +GK+TL+ + +DP+ G + +G +D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+R + Q H+ E TV++ + + +G EK+ ++
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG--------------EKNVDV-------- 111
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
+Y + ++GL+ T ++ +SGG+ +RV+ L
Sbjct: 112 ----------------EYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISLLQPAPETYDLFDDIILISEG 370
L +DE ++ LD ++T +I+ L I+ + N VI + + + D +++G
Sbjct: 152 VLLLDEPTSALDPTST-EIIEEL--IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208
Query: 371 QIV--------FQGPREHVLEFF 385
+V F P+ V + F
Sbjct: 209 ILVEYAKTYDFFTNPQNEVTKLF 231
|
Length = 241 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 58/257 (22%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP--- 193
L+++N + + L+G SGK+T+ L D G + +GH++ ++
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASL 415
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF 253
+ A +SQ +VH+ T+ +A++ SR + E+ A
Sbjct: 416 RNQVALVSQ-NVHLFNDTIANNIAYAR--TEQYSREQI-------EEAA----------- 454
Query: 254 MKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE--MLRGISGGQRKRVTTGEMLVGPA 311
+ D++ K +D DT++G+ +L SGGQR+R+ L+ +
Sbjct: 455 ---------RMAYAMDFINK---MDNGLDTVIGENGVLL---SGGQRQRIAIARALLRDS 499
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPETYDLFDDIIL 366
L +DE ++ LD+ + I +L ++ N T+++ S ++ A D+I++
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEKA-------DEILV 550
Query: 367 ISEGQIVFQGPREHVLE 383
+ +G+IV +G +L
Sbjct: 551 VEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.004
Identities = 58/285 (20%), Positives = 106/285 (37%), Gaps = 63/285 (22%)
Query: 784 SDESRDNIRRRNSTSQSLSLTEEDIAANQPK----RSGMVLPFEP------LSLTFEDVV 833
++E++ I R ED A R MV E ++ TF +
Sbjct: 321 TEEAKRYIDR---------FVGEDPMAYPHLLLAPRYRMVEKLEGPIKFKNVTKTFASEL 371
Query: 834 YSVDMPQE----MKLQGVLDDKL--VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887
+P E ++ GV + +L ++ +PG + A++G SGAGKTTL+ ++ G
Sbjct: 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431
Query: 888 RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDS 947
G + + + P+ E + +P + +
Sbjct: 432 -----------AQKGRGE---------------EKYRPDSGKVEVPKNTVSALIPGEYEP 465
Query: 948 ETRRM-FLEEIMELVELNPLRQSLVGLPGVSG----------LSTEQRKRLTIAVELVAN 996
E + LE + ++ G+S LST Q++R +A L
Sbjct: 466 EFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAER 525
Query: 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSI 1040
P+++ +DE + LD A V R + + G T++ H+P +
Sbjct: 526 PNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 26/164 (15%)
Query: 867 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNIKISGYPKKQETFARISGYC 917
+TA +G SG GK+T + D++ G G Y G S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 918 EQNDIHSP-NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME-----LVELNPLRQSLV 971
++ +P +++++++ Y P + R LE+I+E + ++ L
Sbjct: 170 QKP---TPFEMSIFDNVAYG------PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD 220
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 221 --KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1425 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-251 Score=2312.35 Aligned_cols=1340 Identities=53% Similarity=0.919 Sum_probs=1249.9
Q ss_pred cchHHhhhHHHHhhCCChhhhhhcccccCCCCcceeecccCChHHhHHHHHHhhhhcccCHHHHHHHHHHHHhhcCCCCC
Q 047682 5 EDDEEALIWAALEKLPTYNRLKKGILTASTGAANEVDVHKLGLLERQRLIDKLVKVADVDNEQLLLKLKNRVDRVGISLP 84 (1425)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 84 (1425)
+||||+|+|||+|||||++| +.+..... .++|+.+++..+++.++++..+..++|+++++.++++|.+++ ++|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 45999999999999999999 55543211 179999999999999999999999999999999999999998 899
Q ss_pred ceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHH
Q 047682 85 EIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLL 164 (1425)
Q Consensus 85 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 164 (1425)
.++++++++.+++++..+ ||+.|...++++.++...+.. ++.+..||+|+||.++||+|++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999988755 999999998888877766654 44567899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCC
Q 047682 165 LALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244 (1425)
Q Consensus 165 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~ 244 (1425)
++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|.|||||||+|+++|++++.|++ +..|+|++.
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999998877789999999999999999999999999999999999999999999999999987 666776642
Q ss_pred CCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCC
Q 047682 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLD 324 (1425)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD 324 (1425)
..+|++++.+||++|+||+|||+++||+||||||||+||+++++++++++|||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 26899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHh
Q 047682 325 SSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQE 404 (1425)
Q Consensus 325 ~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~ 404 (1425)
++|+.+|++.||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||+||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHH
Q 047682 405 VTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLL 484 (1425)
Q Consensus 405 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~ 484 (1425)
+++++++.++|..+..++.+.+++||.+.|.+++.++++..+++.|+++.++++.++..+.|.++.|+|++.|..|++++
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCc
Q 047682 485 MKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFY 564 (1425)
Q Consensus 485 ~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y 564 (1425)
++||.+.++++.++.+++++++|++|+++++ ++..++..+.|++||++++.++++++|+.++++++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999985 55556777899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 047682 565 PAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAM 644 (1425)
Q Consensus 565 ~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~ 644 (1425)
++|++.++.+++++|..++++++|.+|+||++|+.+++++||.+++++++.+++++++||+++++++++..|+.++++.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCcccccCCC---------------CCCchhHHHhhcc
Q 047682 645 LVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLPN---------------STEPLGVEVLKSR 709 (1425)
Q Consensus 645 ~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~---------------~~~~~g~~~L~~~ 709 (1425)
+++.+++||+|+..+||+||+|++|+||++|+++++++|||++.+|.|.+.+ ...+.|..+++.+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 9999999999999999999999999999999999999999999999997221 1346788999998
Q ss_pred Ccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcceeecccccccccccCCCccccccCCCCCCCCcc
Q 047682 710 GFF-----TDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTGGTLQLSTCGSSSSHLTQ 783 (1425)
Q Consensus 710 ~~~-----~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 783 (1425)
++. ...+|+|+++|+++|+.++|+++.++++.|+++.. .+.++..+....+..... .
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~-----------------~ 753 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS-----------------A 753 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh-----------------c
Confidence 888 78889999999999999999999999999999877 444444332221110000 0
Q ss_pred cccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEe
Q 047682 784 SDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFR 863 (1425)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 863 (1425)
. .... .+..+. .......++..|+++..++++||.|-+++|.+++.+| +++++|+||||.++
T Consensus 754 ------~------~~~~--~~~~~~-s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~k 815 (1391)
T KOG0065|consen 754 ------G------SSSE--IEKLDD-SSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFK 815 (1391)
T ss_pred ------c------cccc--cccccc-ccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEec
Confidence 0 0000 000000 0001244677888889999999999999998887776 67889999999999
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~ 943 (1425)
||.++||||+||||||||||+||||+++|.++|+|.|||+|++++.++|++|||+|+|.|.+.+||||.|.|+|.||+|.
T Consensus 816 PG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~ 895 (1391)
T KOG0065|consen 816 PGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPK 895 (1391)
T ss_pred CCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHH
Q 047682 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVR 1022 (1425)
Q Consensus 944 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p-~illLDEPTsgLD~~~~~~i~~~l~ 1022 (1425)
+++.+++.++||++++.+||.+++|.+||.|| +|||.+|||||+||+||++|| .||||||||||||++++..|++++|
T Consensus 896 ~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lr 974 (1391)
T KOG0065|consen 896 EVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLR 974 (1391)
T ss_pred cCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999 8999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhhCCCCccCCCCCCCCcceEEecCchh
Q 047682 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQ 1102 (1425)
Q Consensus 1023 ~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~~ 1102 (1425)
+++++|+|||||+||||.++|+.||++++|++||++||+||+|++++++++||+++||++ ||+..||||||||+++.+.
T Consensus 975 kla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~ 1053 (1391)
T KOG0065|consen 975 KLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGA 1053 (1391)
T ss_pred HHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999886 5555699999999999988
Q ss_pred hhhccCCHHHHHhcCHHHHHHHHHHHHhcCCCCC-CCCCCCCCCccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 047682 1103 ELALGVDFTDIYKGSELYRRNKALIEELSKPAPG-SRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTA 1181 (1425)
Q Consensus 1103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~ 1181 (1425)
+...+.||+++|++|++|++++++++++++++++ ..+..++++|++|+|.|++.|+|||+++|||+|.|+.+|++++++
T Consensus 1054 ~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~ 1133 (1391)
T KOG0065|consen 1054 EASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIV 1133 (1391)
T ss_pred ccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8888899999999999999999999999999988 778888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 047682 1182 IALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPH 1261 (1425)
Q Consensus 1182 ~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~ 1261 (1425)
.||++|++||++|+ +.|+++|.+|++|+++++.+.+++...+|.+..||.+++|||++||||+.+|++|++++|+||
T Consensus 1134 ~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~ 1210 (1391)
T KOG0065|consen 1134 AGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPY 1210 (1391)
T ss_pred HHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHH
Confidence 99999999999995 689999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCc
Q 047682 1262 VFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRI 1341 (1425)
Q Consensus 1262 ~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~i 1341 (1425)
.++++.+|.+|+|+|+||++++.+|+||++++++..++++++|||+.+++||.++|+++++++++++++||||++|++.|
T Consensus 1211 ~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~i 1290 (1391)
T KOG0065|consen 1211 NLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLI 1290 (1391)
T ss_pred HHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhCHHHHHHHHHHHHHhCCCcccccc---------CCCcHHHHHHhhhC----CCCcchhHHHHHHHHHHHH
Q 047682 1342 PIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLE---------SGETVKQFLRSYFG----FKHDFLGVIAAVHVAFTVL 1408 (1425)
Q Consensus 1342 p~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~ 1408 (1425)
|.||+||||+||++|.++|++..++||.+..|.. +|.||++|+++++| +.++.......+.++|.++
T Consensus 1291 P~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~ 1370 (1391)
T KOG0065|consen 1291 PKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVA 1370 (1391)
T ss_pred cceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehH
Confidence 9999999999999999999999999999988853 34699999999999 9999999999999999999
Q ss_pred HHHHHHHHHHhhccccC
Q 047682 1409 FVFVFALGIKAFNFQRR 1425 (1425)
Q Consensus 1409 f~~~~~~~l~~~~~~~r 1425 (1425)
+.+++.+++||.|||||
T Consensus 1371 ~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1371 DAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-234 Score=2324.39 Aligned_cols=1418 Identities=61% Similarity=1.061 Sum_probs=1264.0
Q ss_pred CCcchHHhhhHHHHhhCCChhhhhhcccccC-----CCC---cceeecccCChHHhHHHHHHhhhhcccCHHHHHHHHHH
Q 047682 3 RDEDDEEALIWAALEKLPTYNRLKKGILTAS-----TGA---ANEVDVHKLGLLERQRLIDKLVKVADVDNEQLLLKLKN 74 (1425)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (1425)
..|||||+|+|||+||||||+|+|++++.+. .|+ ..|+|+++|+.+|++.+++|++++.++|+++++++.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 118 (1470)
T PLN03140 39 SVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRN 118 (1470)
T ss_pred cccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhcccchhHHHHHHHHHh
Confidence 4678999999999999999999999999653 122 23699999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEc
Q 047682 75 RVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLG 154 (1425)
Q Consensus 75 ~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llG 154 (1425)
|.|++|+++|+++|+|+||+|++++.++++.+||++|...+.++.+.+..+...+++.+++||+|+||.++|||+++|+|
T Consensus 119 ~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llG 198 (1470)
T PLN03140 119 RIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLG 198 (1470)
T ss_pred hhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEc
Confidence 99999999999999999999999998899999999999999887776654433334456789999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhH
Q 047682 155 PPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVE 234 (1425)
Q Consensus 155 p~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 234 (1425)
|||||||||||+|+|+++|+.+++|+|++||+++++...++.++||+|+|.|++++||+|||.|+++|++.+.++++..+
T Consensus 199 pnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~ 278 (1470)
T PLN03140 199 PPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSE 278 (1470)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhh
Confidence 99999999999999999987778999999999998776678899999999999999999999999999887777777677
Q ss_pred hhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEe
Q 047682 235 LSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALAL 314 (1425)
Q Consensus 235 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~il 314 (1425)
..++|++.++.|+.+.|.++++.+.++.+.+..++.+++.+||++|+||.||++++++|||||||||+||++|+++|+++
T Consensus 279 ~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vl 358 (1470)
T PLN03140 279 LARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTL 358 (1470)
T ss_pred cCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEE
Confidence 78888888888888888899988877777788899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHHHHHhCCCCCCC
Q 047682 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPK 394 (1425)
Q Consensus 315 lLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~ 394 (1425)
||||||+|||+.++.++++.|+++++..++|+|+++|||.++++++||+|++|++|+++|+||++++.+||+++||+||+
T Consensus 359 llDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~ 438 (1470)
T PLN03140 359 FMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPE 438 (1470)
T ss_pred EEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999988778899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCCCCCCCCCCCCccccCCccCCHHHHH
Q 047682 395 RKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELL 474 (1425)
Q Consensus 395 ~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 474 (1425)
++|+|||+++++++++++++|.....|+++.++++++++|++++.++++.++++.|.++.+.++.....++|..++++|+
T Consensus 439 ~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~ 518 (1470)
T PLN03140 439 RKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELL 518 (1470)
T ss_pred CCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHH
Confidence 99999999999999888888877767777789999999999999988888877777766666666666678999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhHHHHHHHHHHHhHHHHHHHhhhcchh
Q 047682 475 KACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGMAELSMSIAKLPV 554 (1425)
Q Consensus 475 ~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v 554 (1425)
+.|+.|++++++||++.++.++++.+++|+++|++|++++++.....++..+.|++||+++++++++++++..++.++|+
T Consensus 519 ~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~v 598 (1470)
T PLN03140 519 KACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999987766556677889999999999999999999999999999
Q ss_pred hHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Q 047682 555 FYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMV 634 (1425)
Q Consensus 555 f~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~ 634 (1425)
|+|||+.+||++|+|++|++++++|+.++++++|++|+|||+|+++++++||.+++++++.+++++++|++++++++++.
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCcccccC-CCCCCchhHHHhhccCccc
Q 047682 635 VANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVL-PNSTEPLGVEVLKSRGFFT 713 (1425)
Q Consensus 635 ~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~-~~~~~~~g~~~L~~~~~~~ 713 (1425)
+|+.+++++++++++|+||++++++||+||+|++|+||++|+++|+++|||.+.+|.+.. .+...+.|..+|+.+|+..
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~ 758 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCc
Confidence 999999999999999999999999999999999999999999999999999999887532 2335678999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcceeecccccccccccCCCccccccCCCCCCCCcccccchhhhh
Q 047682 714 DAYWYWLGMAGLAGSILLFNFGFILALSFLNPFG-SQAVISEESQSNECDNRTGGTLQLSTCGSSSSHLTQSDESRDNIR 792 (1425)
Q Consensus 714 ~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 792 (1425)
+++|+|++++++++++++|++++++++++.++.. ....++.+...............+..... ....... ...+
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~ 833 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADG---NNTREVA--IQRM 833 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccc---ccccccc--cccc
Confidence 9999999999999999999999999999998655 32232211110000000000000000000 0000000 0000
Q ss_pred cccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEc
Q 047682 793 RRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMG 872 (1425)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G 872 (1425)
........................++.+|+.|.+++|+|++|+++.+.+.+..+...+++.+|+|||++++||+++||||
T Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G 913 (1470)
T PLN03140 834 SNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMG 913 (1470)
T ss_pred ccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEEC
Confidence 00000000000000000011223456678899999999999999887765555544556789999999999999999999
Q ss_pred CCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH
Q 047682 873 VSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRM 952 (1425)
Q Consensus 873 ~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~ 952 (1425)
|||||||||||+|+|+.++|..+|+|.+||.+.++..+++.+|||+|+|.+++.+||+|+|.|++.+|.+.+.+.+++++
T Consensus 914 ~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~ 993 (1470)
T PLN03140 914 VSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMM 993 (1470)
T ss_pred CCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999999999999998777789999999988765556778999999999999999999999999888876667777778
Q ss_pred HHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 047682 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032 (1425)
Q Consensus 953 ~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1032 (1425)
.++++++.+||.+++|+.+|.+++++|||||||||+||++|+++|+||||||||||||+.++..+++.|++++++|+|||
T Consensus 994 ~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI 1073 (1470)
T PLN03140 994 FVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1073 (1470)
T ss_pred HHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 89999999999999999999988899999999999999999999999999999999999999999999999998899999
Q ss_pred EEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhhCCCCccCCCCCCCCcceEEecCchhhhhccCCHHH
Q 047682 1033 CTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTD 1112 (1425)
Q Consensus 1033 ~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~ 1112 (1425)
||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++||||||||+++.+.+...+.||++
T Consensus 1074 ~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~ 1153 (1470)
T PLN03140 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAE 1153 (1470)
T ss_pred EEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHH
Confidence 99999997789999999999988999999999999999999999998888899999999999999987665556679999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 047682 1113 IYKGSELYRRNKALIEELSKPAPGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWD 1192 (1425)
Q Consensus 1113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~ 1192 (1425)
.|++|++++++++.+++++.++++.++..++++|++++|+|+++|+||+++++||||.|+.+|+++++++|+++|++||+
T Consensus 1154 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1154 HYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999998888888877766666666677899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047682 1193 LGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVI 1272 (1425)
Q Consensus 1193 ~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i 1272 (1425)
++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||++|+|++++|++|++++|+|+.++++++|++|
T Consensus 1234 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i 1313 (1470)
T PLN03140 1234 VGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313 (1470)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhC
Q 047682 1273 VYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWAN 1352 (1425)
Q Consensus 1273 ~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~s 1352 (1425)
+|||+||++++++||||+++++++.++++++|+++++++||.++|+.+++++++++++||||++|+++||+||+|+||+|
T Consensus 1314 ~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~is 1393 (1470)
T PLN03140 1314 VYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWIC 1393 (1470)
T ss_pred HHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccccccC----CCcHHHHHHhhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 047682 1353 PIAWTLYGLVASQFGDIDDTRLES----GETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425 (1425)
Q Consensus 1353 p~~y~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1425 (1425)
|++|+++|+++|||+|.+..|.++ ++++.+|++++|||+++++|++++++++|+++|++++++++|++|||||
T Consensus 1394 p~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1394 PVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999988766553 3578999999999999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-185 Score=1859.71 Aligned_cols=1288 Identities=30% Similarity=0.514 Sum_probs=1057.4
Q ss_pred cCHHHHHHHHHHHHhhcCCCCC--ceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeece
Q 047682 63 VDNEQLLLKLKNRVDRVGISLP--EIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDV 140 (1425)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 140 (1425)
.|.+++++...++.++.+...| +++|+|+||+|++ ...+....||+.|...++......... ..+++.+++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566666654444445554444 9999999999999 344566689999988776653332221 12334557799999
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCCHHHHHH
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL-KLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||+++++.. .++.++||+|+|.|++++||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 24999999999875432 2456999999999999999999999
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
|+++++.+..+.+ ...+.+ ..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9987754221100 000000 11223567899999999999999999999999999
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecC
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGP 377 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 377 (1425)
||||+||++|+.+|++++|||||+|||+.++.++++.|+++++..++|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876678999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCCCCCCC---
Q 047682 378 REHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKS--- 454 (1425)
Q Consensus 378 ~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 454 (1425)
++++.+||+++||+||++.|+|||+++++++.++ +++... +...+.++++++++|++++.++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987643 332221 12234678999999999887766655543221110
Q ss_pred ------------CCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCccccc
Q 047682 455 ------------KSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTN 522 (1425)
Q Consensus 455 ------------~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~ 522 (1425)
+..+.....+.+..++++|++.|.+|+++..+||+..+..++++.+++|+++|++|++.+.+.. +
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0011122345688899999999999999999999999999999999999999999999875432 3
Q ss_pred ccchhhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCH
Q 047682 523 GGIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNV 602 (1425)
Q Consensus 523 ~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~ 602 (1425)
.....|++|+++++.++.++.++...+.+|++|+|||..++|++++|++++.++++|+.++.+++|++++|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 34568999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHH
Q 047682 603 GRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAV 682 (1425)
Q Consensus 603 ~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 682 (1425)
++||.+++++++.+.+++++++++++++++..+|+.+++++++++++++||++++++||+||+|++|+||+.|+++|+++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccC--C----------------------CCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 047682 683 NEFLGNSWQKVL--P----------------------NSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFIL 738 (1425)
Q Consensus 683 nef~~~~~~~~~--~----------------------~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l 738 (1425)
|||.+..+.|.. | +.....|.++|+. ++.....|+|.+++++++++++|.++.++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887731 1 0123478899985 33334568999999999999999999999
Q ss_pred HHHhcCCCC-CcceeecccccccccccCCCccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCC
Q 047682 739 ALSFLNPFG-SQAVISEESQSNECDNRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSG 817 (1425)
Q Consensus 739 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1425)
++++.++.. ...++............. ..+.+....+..+....... . ...+...... . ..
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~e~~~~~~~~-~-~~~~~~~~~~--~--~~ 750 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKA------------GETSASNKNDIEAGEVLGST-D-LTDESDDVND--E--KD 750 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhc------------ccccccccccccccccCCCC-c-cccccccccc--c--cc
Confidence 999987544 222222111000000000 00000000000000000000 0 0000000000 0 00
Q ss_pred ccccccCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-eEEE
Q 047682 818 MVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITG 896 (1425)
Q Consensus 818 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~~~G 896 (1425)
...+.....++|+|++|.++.+ ++++.+|+|||++++|||++|||||||||||||||+|+|+.++| +.+|
T Consensus 751 ~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G 821 (1394)
T TIGR00956 751 MEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGG 821 (1394)
T ss_pred ccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCccee
Confidence 0000112358999999987421 23467999999999999999999999999999999999987644 4569
Q ss_pred EEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 047682 897 NIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGV 976 (1425)
Q Consensus 897 ~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 976 (1425)
+|.+||.+... .+++.+|||+|+|.+++.+||+|+|.|++.+|.+.+.++++++++++++++.++|.+++|+.+|.++.
T Consensus 822 ~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~ 900 (1394)
T TIGR00956 822 DRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE 900 (1394)
T ss_pred EEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC
Confidence 99999998753 46778999999999999999999999999998776667777788899999999999999999987643
Q ss_pred CcCCHHHHHHHHHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 977 SGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+|||||||||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++|
T Consensus 901 -~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 901 -GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred -CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 899999999999999999997 999999999999999999999999998889999999999997778899999999998
Q ss_pred cEEEEECCCCCCchhHHHHHhhCCCCccCCCCCCCCcceEEecCchhhhhccCCHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 047682 1056 GYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEELSKPAP 1135 (1425)
Q Consensus 1056 g~~~y~G~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1135 (1425)
|+++|+|+.+++++++++||+++ |+++||+++|||||+||+++...+.....||.+.|++|+++++..+.+++...+..
T Consensus 980 G~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1058 (1394)
T TIGR00956 980 GQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELS 1058 (1394)
T ss_pred CEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccc
Confidence 89999999999889999999997 56679999999999999988654433446899999999988877666555443322
Q ss_pred CCC---CCCCCCCccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHHHHHH
Q 047682 1136 GSR---DLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSMYT 1212 (1425)
Q Consensus 1136 ~~~---~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~ 1212 (1425)
... +....++|++|+++|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++++++|++|++|+
T Consensus 1059 ~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~ 1135 (1394)
T TIGR00956 1059 KAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFM 1135 (1394)
T ss_pred cCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Confidence 111 111224689999999999999999999999999999999999999999999999987 47889999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchHH------
Q 047682 1213 AVQFLGVQNSSSVQPVVAVERAVF-YREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVK------ 1285 (1425)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~------ 1285 (1425)
++++.++. +.+++|.|..||.+| +|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..
T Consensus 1136 ~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~ 1214 (1394)
T TIGR00956 1136 ATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHE 1214 (1394)
T ss_pred HHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccc
Confidence 98887776 345668888888886 8999999999999999999999999999999999999999999988876
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHH
Q 047682 1286 -FIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVAS 1364 (1425)
Q Consensus 1286 -f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~ 1364 (1425)
||+|++++++..++++++|+++++++||.++|+.+++++++++++||||++|+++||.||+|++|+||++|+++|++.|
T Consensus 1215 ~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~ 1294 (1394)
T TIGR00956 1215 RGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLST 1294 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccccc---------CCCcHH--------------------------------HHHHhhhCCCCcchhHHHHHHH
Q 047682 1365 QFGDIDDTRLE---------SGETVK--------------------------------QFLRSYFGFKHDFLGVIAAVHV 1403 (1425)
Q Consensus 1365 ~~~~~~~~~~~---------~~~~~~--------------------------------~~~~~~~g~~~~~~~~~~~il~ 1403 (1425)
||+|.+..|.. +|.||+ +|++ .+|+++++.|+|+++++
T Consensus 1295 ~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~~~i~~ 1373 (1394)
T TIGR00956 1295 GLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRNFGIFI 1373 (1394)
T ss_pred HcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccchhhhh
Confidence 99998876642 123443 4444 56888899999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 047682 1404 AFTVLFVFVFALGIKAF 1420 (1425)
Q Consensus 1404 ~~~~~f~~~~~~~l~~~ 1420 (1425)
+|++++ +++++++.++
T Consensus 1374 ~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1374 AFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred HHHHHH-HHHHHhhheE
Confidence 999988 7777888775
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-95 Score=910.28 Aligned_cols=578 Identities=31% Similarity=0.568 Sum_probs=504.5
Q ss_pred cCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-eEEEEEEEc
Q 047682 823 EPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKIS 901 (1425)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~~~G~i~i~ 901 (1425)
.+..++|+|+++..+.+. ...+++|+||||+++|||++|||||||||||||||+|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~--------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKS--------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCC--------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 345789999998875331 13578999999999999999999999999999999999998764 789999999
Q ss_pred CccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 902 g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
|++...+.+++.+|||+|||.++|++||+|+|.|+|.+|+|...+.++++++|+++++.+||.+++|+++|+++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||||||+||.+|++||+||||||||||||+.++..++++|+++|++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 599999
Q ss_pred CCCCCCchhHHHHHhhCCCCccCCCCCCCCcceEEecCch--hhhhc----cCCHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 047682 1062 GPLGRHSSHLISYFEAIPGVNKIKDGYNPATWMLEVSSSS--QELAL----GVDFTDIYKGSELYRRNKALIEELSKPAP 1135 (1425)
Q Consensus 1062 G~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~--~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1135 (1425)
|++ +++.+||+++| . +||+++|||||++|+.+.. .+... .....+.++..+...+... .....-.
T Consensus 253 G~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 323 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLS 323 (613)
T ss_pred cCH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHH---HHhhhcc
Confidence 998 68999999995 4 5999999999999998842 11000 0001111110111111100 0111000
Q ss_pred CCCCCCCCCCccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHHHHHHHHH
Q 047682 1136 GSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAVQ 1215 (1425)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~ 1215 (1425)
... ..+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+.
T Consensus 324 ~~~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~ 398 (613)
T KOG0061|consen 324 TSK--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILS 398 (613)
T ss_pred ccc--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHH
Confidence 011 1111227899999999999999999999999999999999999999999999976 45667799999999999
Q ss_pred HHHHHhhhhhhhhhHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchHHHHHHHHHHHH
Q 047682 1216 FLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFW 1295 (1425)
Q Consensus 1216 ~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~ 1295 (1425)
++.+..+.+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++...|++|++++++
T Consensus 399 ~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~ 478 (613)
T KOG0061|consen 399 FMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILL 478 (613)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 99898888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHHhCCCcccccc
Q 047682 1296 SFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLE 1375 (1425)
Q Consensus 1296 ~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~~ 1375 (1425)
..+.+.++|++++++.||...|..+++++++.+++|+||+++.++||.||+|++|+|+++|++||++.|||++....|..
T Consensus 479 ~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~ 558 (613)
T KOG0061|consen 479 SSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFL 558 (613)
T ss_pred HHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999973333322
Q ss_pred C-----CCcHHHHHHhhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047682 1376 S-----GETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQR 1424 (1425)
Q Consensus 1376 ~-----~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1424 (1425)
. ..+..++++ ..+++.++.|.++.+++++.++|++++++++++.-..+
T Consensus 559 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 559 SGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred CcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 224555555 68999999999999999999999999999999865544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-94 Score=916.54 Aligned_cols=565 Identities=29% Similarity=0.486 Sum_probs=500.2
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999986543 3589999999987656677889999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC-CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~-~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsg 1008 (1425)
+|||.|++.++.+.+.+.+++++.++++++.+||.+++|+.+|.++ .++||||||||++||+||+++|+++||||||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999988777778888899999999999999999999764 678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhhCCCCccCCCCC
Q 047682 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGY 1088 (1425)
Q Consensus 1009 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~g~~~~~~~~ 1088 (1425)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+||. +++.+||+++| .+||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCCC
Confidence 9999999999999999988999999999998889999999999985 799999997 67899999995 3699999
Q ss_pred CCCcceEEecCchhhhh-----ccCCHHHHHhcCHHHHHHHHHHHHhcCCCC---CCCCCCCCCCccchhHHHHHHHHHH
Q 047682 1089 NPATWMLEVSSSSQELA-----LGVDFTDIYKGSELYRRNKALIEELSKPAP---GSRDLYFPTQYSQSFFTQCMACLWK 1160 (1425)
Q Consensus 1089 npad~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~l~~R 1160 (1425)
|||||++|+++...+.. ...++.+.|++|+.+++..+.......+.+ ........++|..+++.|+..|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 99999999987543211 112456777777766554433322111111 1111112346789999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhHHHHHHh
Q 047682 1161 QHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREK 1240 (1425)
Q Consensus 1161 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~ 1240 (1425)
+++.+||||.++.+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++..+.+.++.||.+|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999986 467899999999999999999888888899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 047682 1241 AAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVV 1320 (1425)
Q Consensus 1241 ~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1320 (1425)
.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++..||.|++++++..++++++|+++++++|+..+|+.+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHHhCCCcc-ccccCC-----CcHHHHHHhhhCCCCcc
Q 047682 1321 SIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDD-TRLESG-----ETVKQFLRSYFGFKHDF 1394 (1425)
Q Consensus 1321 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~g~~~~~ 1394 (1425)
++++++++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|...+ +..++++.+.||++.++
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~ 586 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD 586 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999998764 554211 11246666789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 047682 1395 LGVIAAVHVAFTVLFVFVFALGIKAFNFQRR 1425 (1425)
Q Consensus 1395 ~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1425 (1425)
+|.+++++++|.++|+++++++|++....+|
T Consensus 587 ~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 587 LYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999998777666
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-94 Score=909.96 Aligned_cols=582 Identities=24% Similarity=0.404 Sum_probs=485.7
Q ss_pred cCceEEEecceeeeecchhh----------------hhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 823 EPLSLTFEDVVYSVDMPQEM----------------KLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
.++.++|.|++|.+...... +......+++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 36789999999998654200 00011223567999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc
Q 047682 887 GRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966 (1425)
Q Consensus 887 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~ 966 (1425)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+.+.+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999876432 345689999999999999999999999888776556666777889999999999999
Q ss_pred cccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhc
Q 047682 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1046 (1425)
Q Consensus 967 ~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~f 1046 (1425)
+|+.+|+...++||||||||++||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988789999999999999999999999999999999999999999999999998889999999999997789999
Q ss_pred CEEEEEeCCcEEEEECCCCCCchhHHHHHhhCCCCccCCCCCCCCcceEEecCchhhhh------c---cCCHHHHHhcC
Q 047682 1047 DELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELA------L---GVDFTDIYKGS 1117 (1425)
Q Consensus 1047 D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~~~~~------~---~~~~~~~~~~s 1117 (1425)
|++++|++ |+++|+|+. +++++||+++| . +||+++|||||++|+++...+.. . ..+..+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999986 689999997 68999999995 3 59999999999999987532100 0 01123345321
Q ss_pred HHHHHHHHHHHH--hcC-CCC-----CCCCCC-CCCCccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 047682 1118 ELYRRNKALIEE--LSK-PAP-----GSRDLY-FPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGS 1188 (1425)
Q Consensus 1118 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1188 (1425)
. .++..+..+. ... +.+ ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 000 000 001000 11235678999999999999988 99999999999999999999999
Q ss_pred HhccCCCCCCCHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 047682 1189 LFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVV 1268 (1425)
Q Consensus 1189 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~ 1268 (1425)
+||+++ ..+++++.|++|++++++++.+++++++.|+.||+||+|||++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467899999999999998988888888999999999999999999999999999999999999999999
Q ss_pred hhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 047682 1269 YGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWY 1348 (1425)
Q Consensus 1269 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~ 1348 (1425)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHHhCCCcc-----ccccC---CCcHHHHHHhhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 047682 1349 YWANPIAWTLYGLVASQFGDIDD-----TRLES---GETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAF 1420 (1425)
Q Consensus 1349 ~~~sp~~y~~~~l~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1420 (1425)
+|+||++|++++++.|||++.+. +|... ......++. ..++++...|.++++|++|+++|+++++++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987542 35321 011112332 2344455689999999999999999999999998
Q ss_pred cc
Q 047682 1421 NF 1422 (1425)
Q Consensus 1421 ~~ 1422 (1425)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 86
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-91 Score=950.03 Aligned_cols=562 Identities=25% Similarity=0.424 Sum_probs=495.2
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--ceEEEEEEEcCccCCc--ccccceEEEeecCCCCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNIKISGYPKKQ--ETFARISGYCEQNDIHSP 925 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~ 925 (1425)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+..+ ..+++.++|++|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999998532 2468999999987642 234567999999999999
Q ss_pred CCCHHHHHHHHhhccCCC----CCCHHHHHH-HHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEE
Q 047682 926 NVTVYESLLYSAWLRLPP----DVDSETRRM-FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1000 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~~~----~~~~~~~~~-~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~il 1000 (1425)
.+||+|+|.|++.+|.|. +.+.+++++ .++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999999887653 233444333 357789999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhhCC
Q 047682 1001 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIP 1079 (1425)
Q Consensus 1001 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~ 1079 (1425)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||+|++|++ |+++|+||. +++++||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999874 999999999998889999999999997 689999997 68999999995
Q ss_pred CCccCCCCCCCCcceEEecCchhhh----------hccCCHHHHHhcCHHHHHHHHHHHHhcCCC---------------
Q 047682 1080 GVNKIKDGYNPATWMLEVSSSSQEL----------ALGVDFTDIYKGSELYRRNKALIEELSKPA--------------- 1134 (1425)
Q Consensus 1080 g~~~~~~~~npad~~l~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1134 (1425)
. +||+++|||||++|++++..+. ....+|++.|++|+.+++..+.+++.....
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 4 6999999999999998864321 112478999999998887665554322110
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHHHHHHHH
Q 047682 1135 PGSRDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAV 1214 (1425)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1214 (1425)
..++.....+.|..|+|+|+++|++|+++.+||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011112234688999999999999999999999999999999999999999999999986 4578999999999999
Q ss_pred HHHHHHhhhhhhhhhHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchHHHHHHHHHHH
Q 047682 1215 QFLGVQNSSSVQPVVAVERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMF 1294 (1425)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1294 (1425)
++.++.++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 55668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHHhCCCccccc
Q 047682 1295 WSFLLFTFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRL 1374 (1425)
Q Consensus 1295 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~ 1374 (1425)
++.++++++|+++++++||..+|+.+++++++++++|+||++|+++||+||+|++|+||++|++++++.|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887773
Q ss_pred c------------------------CC---CcHHHHHHhhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047682 1375 E------------------------SG---ETVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNF 1422 (1425)
Q Consensus 1375 ~------------------------~~---~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1422 (1425)
. +| .++.+|+...||++++++|+|++|+++|+++|+++++++++++++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 01 156789988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-90 Score=933.75 Aligned_cols=592 Identities=22% Similarity=0.374 Sum_probs=499.2
Q ss_pred cccCceEEEecceeeeecchh-----------------hh-hcc---ccCCceeeeeceeEEEeCCeEEEEEcCCCCChh
Q 047682 821 PFEPLSLTFEDVVYSVDMPQE-----------------MK-LQG---VLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 879 (1425)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~-----------------~~-~~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKT 879 (1425)
+.+.+.+.|+|+++....... .. ..+ ..+.++.+|+|||+.++|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 344678999999886652110 00 001 112357899999999999999999999999999
Q ss_pred hHHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHH-
Q 047682 880 TLMDVLAGRKTGG-YITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD-------VDSETR- 950 (1425)
Q Consensus 880 TLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~-------~~~~~~- 950 (1425)
||||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.|++.+||+|+|.|++.++.+.. ...+++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 9999999986532 4689999999987544446779999999999999999999999988764321 111111
Q ss_pred -----------------------HHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 951 -----------------------RMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 951 -----------------------~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 123578999999999999999998899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhhCCCCccCCC
Q 047682 1008 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKD 1086 (1425)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~g~~~~~~ 1086 (1425)
|||+.++..+++.|+++++ .|+|||+++|||+.+++++||+|++|++ |+++|+||. +++++||+++| . +||+
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~ 438 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPE 438 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCC
Confidence 9999999999999999986 4899999999998889999999999996 789999997 68999999995 4 6999
Q ss_pred CCCCCcceEEecCchhhhh------------ccCCHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCCCCCccchhHHHH
Q 047682 1087 GYNPATWMLEVSSSSQELA------------LGVDFTDIYKGSELYRRNKALIEELSKPAPGSRDLYFPTQYSQSFFTQC 1154 (1425)
Q Consensus 1087 ~~npad~~l~v~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 1154 (1425)
++|||||++|+++...... ...+|++.|++|+.+++..+.++.........+.....+.|..+++.|+
T Consensus 439 ~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~ 518 (1470)
T PLN03140 439 RKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELL 518 (1470)
T ss_pred CCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHH
Confidence 9999999999998643211 1236889999998877655443321100011111112346899999999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhH
Q 047682 1155 MACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVAVERA 1234 (1425)
Q Consensus 1155 ~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~ 1234 (1425)
+.|++|+++.+||||.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++|++++++.++++.. ++.+..||+
T Consensus 519 ~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~ 597 (1470)
T PLN03140 519 KACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLP 597 (1470)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccc
Confidence 9999999999999999999999999999999999999998665445566778899999988888876654 577889999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 047682 1235 VFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAMTPNL 1314 (1425)
Q Consensus 1235 v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~ 1314 (1425)
||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+.
T Consensus 598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~ 677 (1470)
T PLN03140 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677 (1470)
T ss_pred hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHHhCCCccc---cccCC-CcHHHHHHhhhCC
Q 047682 1315 HIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDT---RLESG-ETVKQFLRSYFGF 1390 (1425)
Q Consensus 1315 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~---~~~~~-~~~~~~~~~~~g~ 1390 (1425)
.+|+.+++++++++++|+||++|+++||+||+|++|+||++|+++|+++|||.+.... |.... .++.+|+ +.+|+
T Consensus 678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~ 756 (1470)
T PLN03140 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDV 756 (1470)
T ss_pred HHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCc
Confidence 9999999999999999999999999999999999999999999999999999775532 11112 2445555 78899
Q ss_pred CCc--chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047682 1391 KHD--FLGVIAAVHVAFTVLFVFVFALGIKAFN 1421 (1425)
Q Consensus 1391 ~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1421 (1425)
..+ |.|+++++|+||+++|++++++++++++
T Consensus 757 ~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 757 FTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 754 6799999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-85 Score=822.21 Aligned_cols=564 Identities=26% Similarity=0.480 Sum_probs=501.5
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKISGYPKKQETFARISGYCEQNDIHSPNVT 928 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 928 (1425)
.+..+|+|+||.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3467999999999999999999999999999999999965432 235799999998776544788999999999999999
Q ss_pred HHHHHHHHhhccCCCC----CCHHHHH-HHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 047682 929 VYESLLYSAWLRLPPD----VDSETRR-MFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003 (1425)
Q Consensus 929 v~E~l~~~~~lr~~~~----~~~~~~~-~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLD 1003 (1425)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++|+|++||++.++|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhhCCCCc
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVN 1082 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~g~~ 1082 (1425)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |+++|+||. .++++||+++| .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 999999999999999999999865 899999999999999999999999997 689999998 57999999996 3
Q ss_pred cCCCCCCCCcceEEecCchhhhh-----------cc-CCHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCCCCCccchh
Q 047682 1083 KIKDGYNPATWMLEVSSSSQELA-----------LG-VDFTDIYKGSELYRRNKALIEELSKPAPGSRDLYFPTQYSQSF 1150 (1425)
Q Consensus 1083 ~~~~~~npad~~l~v~~~~~~~~-----------~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1150 (1425)
+||+..++|||+.++++...+.+ .. .+|.+.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 69999999999999998322111 11 4789999999999876544332221122223333456899999
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 047682 1151 FTQCMACLWKQHWSYWRNPPYTAVRFLFTTAIALMFGSLFWDLGTKTSKRQDLFNAMGSMYTAVQFLGVQNSSSVQPVVA 1230 (1425)
Q Consensus 1151 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1230 (1425)
|.|++.|+.|.++.+.||..|+..++++.+++|++.|++|++.+. .+..+.+.+.|++||++++..++++..+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999983 4677889999999999999999887776 5566
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047682 1231 VERAVFYREKAAGMYSSMAYAFAQVLIEIPHVFVQAVVYGVIVYAMIGFEWTAVKFIWYIFFMFWSFLLFTFYGMMCVAM 1310 (1425)
Q Consensus 1231 ~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1310 (1425)
+.|+||+|||...+|++++|.++.++.++|+.++.+++|.+|+||++||.++|++||.|+++++++..++++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHHhCCCccccccC--------------
Q 047682 1311 TPNLHIATVVSIAFYGIWNVFSGFIIPRTRIPIWWRWYYWANPIAWTLYGLVASQFGDIDDTRLES-------------- 1376 (1425)
Q Consensus 1311 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~~~-------------- 1376 (1425)
+++...|+.++++.++...+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|.+.
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998888621
Q ss_pred -------CC---cHHHHHHhhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 047682 1377 -------GE---TVKQFLRSYFGFKHDFLGVIAAVHVAFTVLFVFVFALGIKAFNFQ 1423 (1425)
Q Consensus 1377 -------~~---~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1423 (1425)
|. .+.+|++..|++++.|.|++++|++||.++|.+++++++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 11 346788889999999999999999999999999999999999853
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=768.75 Aligned_cols=568 Identities=26% Similarity=0.435 Sum_probs=478.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++++|+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.+++++|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35679999999999999999999999999999999999998765568999999998865445678999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc-c
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM-L 290 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~ 290 (1425)
|+|||.|+++++..... .+ ++.+.+++++++.+||++++||.||+++ .
T Consensus 116 V~e~l~f~~~~~~~~~~-------~~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 164 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRV-------TK------------------------KEKRERVDEVLQALGLRKCANTRIGVPGRV 164 (617)
T ss_pred HHHHHHHHHhcCCCCCC-------CH------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCCC
Confidence 99999999876532110 00 1123457889999999999999999864 6
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++|
T Consensus 165 ~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred CCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 89999999999999999999999999999999999999999999999976 47899999999999999999999999999
Q ss_pred eEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCCC
Q 047682 371 QIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTP 450 (1425)
Q Consensus 371 ~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1425)
+++|+|+++++.+||+++|++||++.|++||+.++++..+.... + ...+.+++.+.|+.+...++........
T Consensus 244 ~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 316 (617)
T TIGR00955 244 RVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNLW 316 (617)
T ss_pred eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhhh
Confidence 99999999999999999999999999999999998865332110 0 1112345556666555444433222111
Q ss_pred CCCCC---CCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchh
Q 047682 451 FDKSK---SHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYV 527 (1425)
Q Consensus 451 ~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~ 527 (1425)
..... ..........+..+++.|+..+..|.++..+||+..+..++++.+++++++|++|++.+.+.. +.....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~~ 393 (617)
T TIGR00955 317 SGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNIN 393 (617)
T ss_pred hccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHH
Confidence 11000 000111223567889999999999999999999999999999999999999999998765432 233357
Q ss_pred hHHHHHHHHHHHhHHH-HHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHH
Q 047682 528 GALFFTIIMITFNGMA-ELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAF 606 (1425)
Q Consensus 528 g~lf~~~~~~~~~~~~-~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff 606 (1425)
|++|+.++...+.++. .+.....++++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+++++.+||
T Consensus 394 g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~ 473 (617)
T TIGR00955 394 GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHH
Confidence 8889888887777654 456677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhc
Q 047682 607 KQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFL 686 (1425)
Q Consensus 607 ~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 686 (1425)
.+++++++...++.+++.++++++++..+|..+++++++++++++||+++.++||+||+|++|+||++|+++++++|||.
T Consensus 474 ~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~ 553 (617)
T TIGR00955 474 TFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS 553 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc-cccCCC---CCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047682 687 GNSW-QKVLPN---STEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFL 743 (1425)
Q Consensus 687 ~~~~-~~~~~~---~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~ 743 (1425)
+..+ .|...+ .+...|..+++.+|+... ++|.++++++++.++|.++++++|++.
T Consensus 554 ~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 554 DVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776 332111 123458999999998765 458999999999999999999999864
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=758.10 Aligned_cols=583 Identities=31% Similarity=0.536 Sum_probs=489.7
Q ss_pred CCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 047682 83 LPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTT 162 (1425)
Q Consensus 83 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 162 (1425)
...++++|+|++++.... . +..+++|+||||+++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~-~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------S-KKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------C-CccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346789999999886432 0 03467999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhc
Q 047682 163 LLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242 (1425)
Q Consensus 163 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 242 (1425)
||++|+|+.....+++|+|++||++.+....++.+|||.|+|.+++++||+||+.|+|+++-+.+ +.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~----- 139 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSK----- 139 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCH-----
Confidence 99999999987667899999999888777778899999999999999999999999998874321 111
Q ss_pred CCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCC
Q 047682 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTG 322 (1425)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsg 322 (1425)
++.+.++|++++.|||.+|+||+||+...||+||||||||+||..|+.+|+||||||||||
T Consensus 140 -------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 140 -------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 2345689999999999999999999998999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHH
Q 047682 323 LDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402 (1425)
Q Consensus 323 LD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l 402 (1425)
||+.++.++++.|+++|+. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhhhccCCCCccCCHHHHHHHHH-HchhhhhhhhccCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHH
Q 047682 403 QEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQ-AFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRE 481 (1425)
Q Consensus 403 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~ 481 (1425)
.++.+..++.+..... .......+.++ .....+... .........+ ........++|.|+..+.+|.
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTSK-----KVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHH-HHhhhccccc-----ccccccCCcHHHHHHHHHHHH
Confidence 9988743110000000 00000000000 000000000 0000000000 000111678999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhHHHHHHHHHHHhHHH-HHHHhhhcchhhHhhhc
Q 047682 482 LLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGMA-ELSMSIAKLPVFYKQRD 560 (1425)
Q Consensus 482 ~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~-~~~~~~~~~~vf~kqr~ 560 (1425)
+....|++..+..++++.+++++++|.+|++.+...... ....|++|+.+.+..+..+. .+..+..++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999986443332 24578888888887676666 58889999999999999
Q ss_pred CCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 047682 561 LRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFG 640 (1425)
Q Consensus 561 ~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~ 640 (1425)
.+.|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.++.++...++.++..+++++.++...|.+++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCcccccCC--CCCCchhHHHhhccCccccchhH
Q 047682 641 SFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSWQKVLP--NSTEPLGVEVLKSRGFFTDAYWY 718 (1425)
Q Consensus 641 ~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~L~~~~~~~~~~~~ 718 (1425)
+++++.+++++||+++.++||.||+|+.|+|+++|++++++.|||.+....|... ..+...|.++++..++...+ .
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS--F 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--c
Confidence 9999999999999999999999999999999999999999999999733333222 23566788999998886554 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 047682 719 WLGMAGLAGSILLFNFGFILALSFL 743 (1425)
Q Consensus 719 w~~~~~l~~~~~~f~~~~~l~l~~~ 743 (1425)
|.++.++++++++|.+++++++.+.
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~ 607 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFR 607 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999875
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=759.20 Aligned_cols=609 Identities=22% Similarity=0.346 Sum_probs=468.5
Q ss_pred CCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 047682 83 LPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTT 162 (1425)
Q Consensus 83 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 162 (1425)
.+.++++|.|+++.+.......+.... ...+.......+ ..++.+++++|+|+|++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNI----KRILGHKPKISD-ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCccccccc----cccccccccccc-ccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 457899999999987542101111110 011100001011 122233567999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhc
Q 047682 163 LLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242 (1425)
Q Consensus 163 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 242 (1425)
||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... ..+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~----- 175 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTK----- 175 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCH-----
Confidence 999999998874 3589999999987542 23569999999999999999999999875432110 000
Q ss_pred CCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCC
Q 047682 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTG 322 (1425)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsg 322 (1425)
++...+++++++.+||++++||.||++..++|||||||||+||++|+.+|++++|||||+|
T Consensus 176 -------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 176 -------------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 1123457889999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHH
Q 047682 323 LDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402 (1425)
Q Consensus 323 LD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l 402 (1425)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999976 5789999888888889999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCC---CCCCCC-----CCCC-ccccCCccCCHHHH
Q 047682 403 QEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRT---PFDKSK-----SHPA-ALTTKSYGINKKEL 473 (1425)
Q Consensus 403 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~~~~ 473 (1425)
.++++...+.+.....+.+ ...+++.+.|++... ++..+.... +....+ ..+. ......+..+++.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000000 112233334432111 110000000 000000 0000 00112244678999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhHHHHHHHHHHH-hHHHHHHHhhhcc
Q 047682 474 LKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITF-NGMAELSMSIAKL 552 (1425)
Q Consensus 474 ~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~-~~~~~~~~~~~~~ 552 (1425)
+..+++|.+.. +|++.....|+++.+++|+++|++|++.+ ..+.+...|++||.+++..+ ..+..+..+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887 78887778999999999999999999864 12334567999998777554 5567788888999
Q ss_pred hhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047682 553 PVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRS 632 (1425)
Q Consensus 553 ~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~ 632 (1425)
++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++++||.+++++++...++.+++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCcc-----cccCCCCCCchhHHHhh
Q 047682 633 MVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNSW-----QKVLPNSTEPLGVEVLK 707 (1425)
Q Consensus 633 ~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~g~~~L~ 707 (1425)
..+|+.+++++++++++|+||+++ +||+||+|++|+||++|+++++++|||.+.+- .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976542 23211100011111222
Q ss_pred ccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047682 708 SRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLN 744 (1425)
Q Consensus 708 ~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~ 744 (1425)
...+. ....|.+++++++++++|.++++++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 234688999999999999999999987643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=728.14 Aligned_cols=834 Identities=21% Similarity=0.273 Sum_probs=441.6
Q ss_pred HhHHHHHHhhhhcccCHHHHHHHHHHHH-hhcCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccc
Q 047682 49 ERQRLIDKLVKVADVDNEQLLLKLKNRV-DRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHIL 127 (1425)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1425)
..+.-..++.++++..+. +...- ...-..-...+++|+|+++++..
T Consensus 316 ~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYPs---------------------------- 362 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYPS---------------------------- 362 (1228)
T ss_pred ccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCCC----------------------------
Confidence 444445666666666554 11110 01112234678999999987622
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC
Q 047682 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD 204 (1425)
Q Consensus 128 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d 204 (1425)
+ ++.+||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|.++++++. +.++|.|.|+|
T Consensus 363 --R-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 363 --R-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred --C-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeech
Confidence 2 2457999999999999999999999999999999999999999 9999999999988764 57899999998
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.+| ..||+|||.|+. |+.+.+.+.+++...+ ..+++ ..|++..||.
T Consensus 437 vlF-~~tI~eNI~~G~-------------------------~dat~~~i~~a~k~an-----a~~fi---~~lp~g~~T~ 482 (1228)
T KOG0055|consen 437 VLF-ATTIRENIRYGK-------------------------PDATREEIEEAAKAAN-----AHDFI---LKLPDGYDTL 482 (1228)
T ss_pred hhh-cccHHHHHhcCC-------------------------CcccHHHHHHHHHHcc-----HHHHH---HhhHHhhccc
Confidence 655 679999999973 3444444444443221 22333 4588899999
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
||++++. |||||||||+|||||+.+|+|||||||||+||++++..+.+.|++..+ |+|+|+ +.|..+.+ +.+|+|
T Consensus 483 vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv-VaHRLStI-rnaD~I 557 (1228)
T KOG0055|consen 483 VGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV-VAHRLSTI-RNADKI 557 (1228)
T ss_pred ccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE-Eeeehhhh-hccCEE
Confidence 9998886 999999999999999999999999999999999999999999998754 778877 45555555 459999
Q ss_pred EEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHH--HhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhh
Q 047682 365 ILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL--QEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQK 442 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1425)
++|++|+|++.|+++|+++. ..-+++.. |+....++. . +.++. ..++.....+.+.
T Consensus 558 ~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~---~~~~~----~~~~~~~s~~~s~---- 615 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-E---EEEES----LKEERSRSLKSSS---- 615 (1228)
T ss_pred EEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-c---ccccc----hhhhhhhcccccc----
Confidence 99999999999999999862 11222222 222211110 0 00000 0000000000000
Q ss_pred hhhccCCCCCCCCC----CCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-------HHHHH--
Q 047682 443 LGDGLRTPFDKSKS----HPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGV-------ISMTL-- 509 (1425)
Q Consensus 443 ~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~l-------i~~~~-- 509 (1425)
.......+...... ........+. ..+..+..+.|-+...+.++...+.-.+..++.|. +.+.+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~ 692 (1228)
T KOG0055|consen 616 SSPSLSRGSNRSNLLSVKPEGEDPEEPV---SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLE 692 (1228)
T ss_pred ccccccCCcccccccccccccccccccc---ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 00000000000000 0000000000 00001222334444444444444443333333222 22221
Q ss_pred -HhccCCCCcccccccchhhHHHHHHHHHH----------HhHHHHHHHhhhcchhhHh--hhcCCCcCchhHHHHHHHH
Q 047682 510 -FFRTKMHRDSVTNGGIYVGALFFTIIMIT----------FNGMAELSMSIAKLPVFYK--QRDLRFYPAWAYGLPTWIL 576 (1425)
Q Consensus 510 -f~~~~~~~~~~~~~~~~~g~lf~~~~~~~----------~~~~~~~~~~~~~~~vf~k--qr~~~~y~~~ay~la~~i~ 576 (1425)
|+..+ .+..........++|.++.... |.-+.+....--|...|.+ ..+..||.---.. +....
T Consensus 693 ~f~~~~--~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~ 769 (1228)
T KOG0055|consen 693 AFYPPD--DDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSS 769 (1228)
T ss_pred HHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHH
Confidence 12111 1111111111223332222111 1111111111111111111 0111122110000 00000
Q ss_pred HhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH------HHHHH
Q 047682 577 KVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAML------VLFAL 650 (1425)
Q Consensus 577 ~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~------~~~l~ 650 (1425)
++- .++. . +--++..-.+.+...++++.-+..+|..+++=+.+ +++.+
T Consensus 770 RLa--------------------~Da~-~-----vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~ 823 (1228)
T KOG0055|consen 770 RLA--------------------TDAS-N-----VRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLIL 823 (1228)
T ss_pred HHh--------------------cchH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0 00000001111111222222223333333332211 12222
Q ss_pred hhccccccCcchhhHHHHhHc---HHHHHHHHHHHHhhcCCcccccCCCCCCchhHHHhhccC-------ccccchhHHH
Q 047682 651 GGFVLSREDIKKWWKWAYWCS---PLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRG-------FFTDAYWYWL 720 (1425)
Q Consensus 651 ~Gf~i~~~~ip~~~~W~~~is---p~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~-------~~~~~~~~w~ 720 (1425)
+++.-. +++.-.+ --.|...+-..+|...+-..... ......+++.+. -.......|.
T Consensus 824 ~~~~~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~a----l~~e~~~~~~y~~~l~~p~~~~~~~~~i~ 891 (1228)
T KOG0055|consen 824 SGYLQK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAA----LCAEEKFMELYKEELEKPRKSSFKRGLIS 891 (1228)
T ss_pred HHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222110 0000000 00011111111111111000000 000001111100 0000111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccC-CCccccccCCCCCCCCcccccchhhhhccccccc
Q 047682 721 GMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRT-GGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQ 799 (1425)
Q Consensus 721 ~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1425)
+++.-+...+.|. ...+++.|-..+-.+. .........+. ...++....+......+....++. +...
T Consensus 892 gl~f~~sqs~~~~-~~A~~f~~G~~Li~~g----~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~------Aa~~ 960 (1228)
T KOG0055|consen 892 GLGFGFSQSLLFF-VYALSFWYGARLISNG----EMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKI------AAGS 960 (1228)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhHHHHhcC----CcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH------HHHH
Confidence 3332222222211 1122222211110000 00000000000 000000000000001010000000 0000
Q ss_pred ccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChh
Q 047682 800 SLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 879 (1425)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKT 879 (1425)
.-..-+..+..+.....+...|.-...++|+||++.|+.. ++.++|+|+|++|++|+.+||+||||||||
T Consensus 961 iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 961 IFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHH
Confidence 0000000000000001222233344579999999999743 456899999999999999999999999999
Q ss_pred hHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 047682 880 TLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE 956 (1425)
Q Consensus 880 TLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~ 956 (1425)
|.+.+|-+..+ +..|.|.|||.++++ +..|+.+|.|.|+|.+|. .|++||+.|+. .+.+.++ +.+
T Consensus 1031 TvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e----Ii~ 1098 (1228)
T KOG0055|consen 1031 TVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE----IIE 1098 (1228)
T ss_pred HHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH----HHH
Confidence 99999998654 568999999998765 456788999999999985 59999999971 1244443 333
Q ss_pred HHHH-------cCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 047682 957 IMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029 (1425)
Q Consensus 957 ~l~~-------l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~ 1029 (1425)
+.+. .+|.+-.|+.+|..|+ +||||||||++|||||++||+||+|||.||.||+++.+.|+++|.+.. .||
T Consensus 1099 Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gR 1176 (1228)
T KOG0055|consen 1099 AAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGR 1176 (1228)
T ss_pred HHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCC
Confidence 3333 2456667888987654 799999999999999999999999999999999999999999998875 699
Q ss_pred EEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1030 TVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1030 tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|.|+++|++| ..+.+|.|.|+++ |+++..|.-
T Consensus 1177 T~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1177 TTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred cEEEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 9999999986 5788999999996 799999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-70 Score=733.16 Aligned_cols=223 Identities=27% Similarity=0.392 Sum_probs=191.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4888999877631 135799999999999999999999999999999999998653 489999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+.+|..+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 334445567889999999998888874 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++..+|||+++|++ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999996 68899998
Q ss_pred CCCCchhHHHHH
Q 047682 1064 LGRHSSHLISYF 1075 (1425)
Q Consensus 1064 ~~~~~~~~~~yf 1075 (1425)
. +++..-|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 6 4555444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=708.82 Aligned_cols=765 Identities=21% Similarity=0.269 Sum_probs=426.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+.|+|||++|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .+|||+|++|.+ +.||||
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~-ngTvre 600 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQ-NGTVRE 600 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhh-CCcHHH
Confidence 3799999999999999999999999999999999999976 99999999 599999987755 679999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
||.|+..+. .+||+.+.++|.+++|.++.|++| .|.||++++. ||
T Consensus 601 NILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGin-LS 645 (1381)
T KOG0054|consen 601 NILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGIN-LS 645 (1381)
T ss_pred hhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCccC-Cc
Confidence 999998764 479999999999999999999888 4999999885 99
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHH-HHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTS-LRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~-L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 373 (1425)
||||||+++|||++++++|++||+|.|++|+++..+|.+. ++.+. .++|+|+ ++| ..+..+.+|.|++|++|+|+
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~IL-VTH-ql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVIL-VTH-QLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEE-EeC-chhhhhhCCEEEEecCCeEe
Confidence 9999999999999999999999999999999999999974 43332 2455555 455 56788999999999999999
Q ss_pred EecChhHHHH---HHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCCC
Q 047682 374 FQGPREHVLE---FFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTP 450 (1425)
Q Consensus 374 ~~G~~~~~~~---~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1425)
..|+++|+.+ .|+.+ +.+....++.. ...+.+.......+. +. +... ......+.
T Consensus 722 ~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~---~~~~~~~~- 779 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLE---SLSSEEEK- 779 (1381)
T ss_pred cccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccch-hh-hhhh---hhcccccc-
Confidence 9999999983 33322 00000000000 000000000000000 00 0000 00000000
Q ss_pred CCCCCCCCCcccc---CCccCCHHHHHHHHHHHHHHHHhcC--hHHHHH--HHHHHHHHHHHHHH-HHh--ccCCCCccc
Q 047682 451 FDKSKSHPAALTT---KSYGINKKELLKACISRELLLMKRN--SFVYIF--KLIQLTITGVISMT-LFF--RTKMHRDSV 520 (1425)
Q Consensus 451 ~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~r~~~~~~r~--~~~~~~--~~~~~~i~~li~~~-~f~--~~~~~~~~~ 520 (1425)
....+..+..... ...+.-.|.- ...+.+. .+.... -+.......+..+. .|+ ++.......
T Consensus 780 ~~~~~~~~~~~~~~ee~~~G~v~~~v--------Y~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~ 851 (1381)
T KOG0054|consen 780 SKDEKEEEDKLVQEEERETGKVSWSV--------YKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNG 851 (1381)
T ss_pred cccccchhhHHHHHHHHhcCEeeHHH--------HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 0000000000000 0000000110 0111111 111111 11111111111121 222 222111111
Q ss_pred ---ccccchhhHH----HHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHH-HHHHhh
Q 047682 521 ---TNGGIYVGAL----FFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVA-VWVILN 592 (1425)
Q Consensus 521 ---~~~~~~~g~l----f~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~-i~~~i~ 592 (1425)
.+...|.++. +...++..+.++......+.....++ -.+-..+++.|++|+++. ...+++
T Consensus 852 ~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh------------~~ml~~Ilrapm~FFdtTP~GRILN 919 (1381)
T KOG0054|consen 852 TTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLH------------DKLLNSILRAPMSFFDTTPTGRILN 919 (1381)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhCcchhcCCCCccchhh
Confidence 1222232222 22222222222222222211111111 124456777888888875 455666
Q ss_pred hhccCcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHh
Q 047682 593 YYVIGFDP---NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYW 669 (1425)
Q Consensus 593 Y~~~gl~~---~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~ 669 (1425)
.|..+.+. .....+.+++ ..+..+++.+ .+++.....+++.+..+... ||
T Consensus 920 RFSkD~~~vD~~Lp~~~~~~~---------~~~~~~l~~~---~vi~~~~P~fli~~~pl~v~---------------~~ 972 (1381)
T KOG0054|consen 920 RFSKDIDTVDVLLPFTLEFFL---------QSLLNVLGIL---VVISYVTPWFLIAIIPLGVI---------------YY 972 (1381)
T ss_pred hcccchHHHHHhhHHHHHHHH---------HHHHHHHHHH---HHhhHHhHHHHHHHHHHHHH---------------HH
Confidence 66555431 1111111111 1111111111 11111111112221111111 11
Q ss_pred HcHHHHHHHHHHHHhhcCCcccccCCC---------------CCCchhHHHhhccCccc------cchhHHHHHH-HHHH
Q 047682 670 CSPLMYAQNGLAVNEFLGNSWQKVLPN---------------STEPLGVEVLKSRGFFT------DAYWYWLGMA-GLAG 727 (1425)
Q Consensus 670 isp~~y~~~al~~nef~~~~~~~~~~~---------------~~~~~g~~~L~~~~~~~------~~~~~w~~~~-~l~~ 727 (1425)
.--..|-..+--+.+..+.....+... .....-.......+.+. .....|+++- -+++
T Consensus 973 ~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig 1052 (1381)
T KOG0054|consen 973 FVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLG 1052 (1381)
T ss_pred HHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222222222222211111000 00000011111111111 1122355542 2333
Q ss_pred HHHHHHHHHHHHHHhcCCC--C-CcceeecccccccccccCCCccccccCCCCCCCCcccccchhhhhcccccccccccc
Q 047682 728 SILLFNFGFILALSFLNPF--G-SQAVISEESQSNECDNRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLT 804 (1425)
Q Consensus 728 ~~~~f~~~~~l~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1425)
..+++..+....+...... + .+..++..- + ....+.+......+.+....+++++.++...+++.+.+
T Consensus 1053 ~~~v~~~al~~vl~~~~~~~~g~vGLslsyal------~---lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~ 1123 (1381)
T KOG0054|consen 1053 NLVVLIAALFAVLLPSGLISPGLVGLSLSYAL------Q---LTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE 1123 (1381)
T ss_pred HHHHHHHHHHHHHccCCCCCcchHHHHHHHHH------H---HHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC
Confidence 3333333222222211100 1 000011000 0 00001111111111112222233333322211111111
Q ss_pred hhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhh
Q 047682 805 EEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 884 (1425)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~ 884 (1425)
.+.. +....+|. ...++|+|++..|.. +-..+|||||++|+|||++||+|++|||||||+++
T Consensus 1124 ~~~~------~pp~~WP~-~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~a 1185 (1381)
T KOG0054|consen 1124 IEES------RPPPSWPS-KGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILA 1185 (1381)
T ss_pred CcCC------CCCCCCCC-CCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHH
Confidence 1000 01122332 237999999877741 23469999999999999999999999999999999
Q ss_pred hcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Q 047682 885 LAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV 961 (1425)
Q Consensus 885 l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l 961 (1425)
|.+... +.+|+|.|||.++.+ .+.|++++.+|||+.+|.. |+|+|| |+..+..++.+.++||..
T Consensus 1186 LFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NL----------DPf~e~sD~~IW~ALe~~ 1252 (1381)
T KOG0054|consen 1186 LFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNL----------DPFDEYSDDEIWEALERC 1252 (1381)
T ss_pred HHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-cccccc----------CcccccCHHHHHHHHHHh
Confidence 999765 357999999998765 4678889999999998764 887776 555555666788899888
Q ss_pred CCccccccccC------CCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 047682 962 ELNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035 (1425)
Q Consensus 962 ~l~~~~~~~~g------~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~ 1035 (1425)
+|.+......+ .++..++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+..+ ++|||++.
T Consensus 1253 ~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIA 1331 (1381)
T KOG0054|consen 1253 QLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIA 1331 (1381)
T ss_pred ChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 88765433221 134678999999999999999999999999999999999999999999999874 79999999
Q ss_pred cCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1036 HQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1036 H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|+.+ ....+|||+||++ |+++.+|++.
T Consensus 1332 HRl~--TVmd~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1332 HRLN--TVMDSDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred eccc--hhhhcCeEEEeeC-CeEeecCChH
Confidence 9986 3445799999997 6889999873
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=716.86 Aligned_cols=211 Identities=23% Similarity=0.314 Sum_probs=176.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++|+|++++|+. +..++|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 6999999998841 22369999999999999999999999999999999999766 3579999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 975 (1425)
.+ ...|+.++||||++.+|.. |+||||.+.. ..++ +.+.++++..++.+. .|+.+|..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 54 4567889999999999875 9999996531 2222 336777777776543 35555543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999986 4899999999986 4566999999997
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|+++.+|+..
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 6899999863
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=708.80 Aligned_cols=210 Identities=21% Similarity=0.286 Sum_probs=176.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++|+|+++.|+. +.+++|+|+|++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 6999999998841 22469999999999999999999999999999999999766 3589999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 975 (1425)
.+ ..+|+.++||||++.+++. |++|||.+.. +.++ +.+.++++..++.+. .|+.+|..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 53 4577889999999999875 9999996421 2232 336777777777543 34555543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 4899999999985 4566999999996
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++.+|+.
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 688999986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-66 Score=610.23 Aligned_cols=474 Identities=27% Similarity=0.339 Sum_probs=364.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccEEEECCccCCCCCc-------cceEEEEccCC-
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS-LKLSGRVTYNGHNMDEFVP-------QRTAAYISQHD- 204 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 204 (1425)
..+++||||++.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 46999999999999999999999999999999999999886 4568999999997755432 26799999984
Q ss_pred -CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 205 -VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 205 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
.+-|.+||.+.|.-..+.++... .++...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 56677899998886554432111 12334567789999999987654
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
+++++.|||||||||.||+||+.+|++|++|||||+||..++.+|++.|+++.++. ++.++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhcCe
Confidence 67889999999999999999999999999999999999999999999999998765 56677789999999999999
Q ss_pred EEEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhh
Q 047682 364 IILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKL 443 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1425)
|+||++|++++.|+.+++.+- |. .||. . .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT---~--------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYT---R--------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------Cccc---H--------------HH
Confidence 999999999999999998641 11 0110 0 00
Q ss_pred hhccCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Q 047682 444 GDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNG 523 (1425)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~ 523 (1425)
..
T Consensus 255 l~------------------------------------------------------------------------------ 256 (539)
T COG1123 255 LA------------------------------------------------------------------------------ 256 (539)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred cchhhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHH
Q 047682 524 GIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVG 603 (1425)
Q Consensus 524 ~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~ 603 (1425)
..|...
T Consensus 257 ---------------------------a~p~~~----------------------------------------------- 262 (539)
T COG1123 257 ---------------------------AVPRLG----------------------------------------------- 262 (539)
T ss_pred ---------------------------hCCCcc-----------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHH
Q 047682 604 RAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVN 683 (1425)
Q Consensus 604 ~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 683 (1425)
T Consensus 263 -------------------------------------------------------------------------------- 262 (539)
T COG1123 263 -------------------------------------------------------------------------------- 262 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccc
Q 047682 684 EFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDN 763 (1425)
Q Consensus 684 ef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 763 (1425)
. ..
T Consensus 263 ---~--~~------------------------------------------------------------------------ 265 (539)
T COG1123 263 ---D--EK------------------------------------------------------------------------ 265 (539)
T ss_pred ---c--cc------------------------------------------------------------------------
Confidence 0 00
Q ss_pred cCCCccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhh
Q 047682 764 RTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMK 843 (1425)
Q Consensus 764 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 843 (1425)
. . ... . .. ... ...-++.+|++..+..++...
T Consensus 266 ----------------~--~-----~~~-~------------~~-----~~~-------~~~ll~V~~l~k~y~~~~~~~ 297 (539)
T COG1123 266 ----------------I--I-----RLP-R------------RG-----PLR-------AEPLLSVRNLSKRYGSRKGLF 297 (539)
T ss_pred ----------------c--c-----ccc-c------------cc-----ccc-------cCceeEeeeeeeeeccccccc
Confidence 0 0 000 0 00 000 001255566655554322111
Q ss_pred hccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC--C---cccccceEEEee
Q 047682 844 LQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK--K---QETFARISGYCE 918 (1425)
Q Consensus 844 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~ 918 (1425)
....+...+++||||++++||++||+|+||||||||.++|+|..++ ..|.|.++|.+. . ....++.+-+++
T Consensus 298 --~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvF 373 (539)
T COG1123 298 --VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVF 373 (539)
T ss_pred --cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEE
Confidence 0001335789999999999999999999999999999999998764 579999999762 1 123445666777
Q ss_pred cCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHHHHHHHHHHHhh
Q 047682 919 QND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995 (1425)
Q Consensus 919 Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~ 995 (1425)
||+ .+.|.+||++.+......... ....++++++.++++.++|.. ..+.. +.+||||||||++|||||+.
T Consensus 374 Qdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~ 446 (539)
T COG1123 374 QDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALAL 446 (539)
T ss_pred eCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhc
Confidence 764 678999999999876544332 235666778999999999985 34443 56899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+|++|++|||||.||+..+..|.+.|+++.++ |.|.|++|||... +...||||++|.+ |+++..||.
T Consensus 447 ~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 99999999999999999999999999999765 9999999999874 7789999999996 799999975
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=687.29 Aligned_cols=216 Identities=20% Similarity=0.321 Sum_probs=178.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-------------
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------- 892 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~------------- 892 (1425)
.++|+||+|.|+.. ++.++|+|+|++|+||+++||+||||||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 69999999998521 2346999999999999999999999999999999999965531
Q ss_pred ---------------------------------------eEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 047682 893 ---------------------------------------YITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 893 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
+.+|+|.+||.++.+ ..+++.+|||+|++.+| +.|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 147999999998653 45788899999999888 57999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLD 1003 (1425)
|||.|+. ++.+.++ ++++++..++.+ -.|+.+|.. ...||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDATRED----VKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9998852 2333333 566666666543 357778754 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCC---cE-EEEECCC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GY-EIYVGPL 1064 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G---g~-~~y~G~~ 1064 (1425)
||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+-
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 35899999999985 56789999999983 55 5578874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=698.83 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=176.9
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+|++++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 36999999999852 12359999999999999999999999999999999999765 357999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
+.+ ...|+.++||||++.+|.. |+||||.... +.++ +.+.++++..++.+. .|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 754 4567889999999999875 9999995211 2233 336777888777643 35555543
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999985 5667899999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++.+|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 789999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=632.12 Aligned_cols=458 Identities=21% Similarity=0.290 Sum_probs=348.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCccCCCCCc----cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP--SLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|+++++|++++|+||||||||||+|+|+|.++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 4599999999999999999999999999999999999986 5 8999999998865432 35699999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++......+. . + ..+....++++++.+||++..++.++
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~-~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~- 142 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGI-M-------------------D-----------YDAMYLRAQKLLAQLKLDINPATPVG- 142 (506)
T ss_pred CCCcHHHHhhhcccccccCC-c-------------------C-----------HHHHHHHHHHHHHHcCCCCCcccchh-
Confidence 99999999998643210000 0 0 00112346778999999877776654
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+ ++|+.++|+..++.++||+|++|
T Consensus 143 ----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~-~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 143 ----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HG-IACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCcHHHHHHhcCEEEEE
Confidence 5999999999999999999999999999999999999999999999864 34 45555788999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhcc
Q 047682 368 SEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGL 447 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (1425)
++|++++.|+.+++.. .+..+.+
T Consensus 217 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~------------- 239 (506)
T PRK13549 217 RDGRHIGTRPAAGMTE--------------------------------------------DDIITMM------------- 239 (506)
T ss_pred ECCEEeeecccccCCH--------------------------------------------HHHHHHh-------------
Confidence 9999998876432200 0000000
Q ss_pred CCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchh
Q 047682 448 RTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYV 527 (1425)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~ 527 (1425)
.
T Consensus 240 ---------------------------------------------------------------~---------------- 240 (506)
T PRK13549 240 ---------------------------------------------------------------V---------------- 240 (506)
T ss_pred ---------------------------------------------------------------h----------------
Confidence 0
Q ss_pred hHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHH
Q 047682 528 GALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFK 607 (1425)
Q Consensus 528 g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~ 607 (1425)
T Consensus 241 -------------------------------------------------------------------------------- 240 (506)
T PRK13549 241 -------------------------------------------------------------------------------- 240 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcC
Q 047682 608 QYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLG 687 (1425)
Q Consensus 608 ~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 687 (1425)
+
T Consensus 241 -------------------------------------------------------------------------------~ 241 (506)
T PRK13549 241 -------------------------------------------------------------------------------G 241 (506)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCCC
Q 047682 688 NSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGG 767 (1425)
Q Consensus 688 ~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1425)
.....
T Consensus 242 ~~~~~--------------------------------------------------------------------------- 246 (506)
T PRK13549 242 RELTA--------------------------------------------------------------------------- 246 (506)
T ss_pred cCccc---------------------------------------------------------------------------
Confidence 00000
Q ss_pred ccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccc
Q 047682 768 TLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGV 847 (1425)
Q Consensus 768 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 847 (1425)
..+ . .. . + . + .+ -++++|+++.++.
T Consensus 247 ------------~~~------~----------------~~--~--~-~-~-----~~-~l~~~~l~~~~~~--------- 271 (506)
T PRK13549 247 ------------LYP------R----------------EP--H--T-I-G-----EV-ILEVRNLTAWDPV--------- 271 (506)
T ss_pred ------------ccc------c----------------cc--c--C-C-C-----Cc-eEEEecCcccccc---------
Confidence 000 0 00 0 0 0 0 00 2566777655421
Q ss_pred cCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCC--
Q 047682 848 LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----ETFARISGYCEQND-- 921 (1425)
Q Consensus 848 ~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~-- 921 (1425)
.+++.+|+|+|++|++||++||+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.+||++|+.
T Consensus 272 -~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 349 (506)
T PRK13549 272 -NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKR 349 (506)
T ss_pred -ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhh
Confidence 0123589999999999999999999999999999999997541 137999999976532 12245689999985
Q ss_pred -CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHHHHHHHHHHHhhCC
Q 047682 922 -IHSPNVTVYESLLYSAWLRLP--PDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 997 (1425)
Q Consensus 922 -~~~~~lTv~E~l~~~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p 997 (1425)
.+++.+||.|++.+....... ...+.+..++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|
T Consensus 350 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p 424 (506)
T PRK13549 350 DGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNP 424 (506)
T ss_pred CCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 467889999999875321111 0112333445688999999996 4666653 479999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCC
Q 047682 998 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGR 1066 (1425)
Q Consensus 998 ~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~ 1066 (1425)
++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..+
T Consensus 425 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 999999999999999999999999999888999999999986 57889999999997 67888887654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-64 Score=635.72 Aligned_cols=488 Identities=21% Similarity=0.239 Sum_probs=352.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC----------CCC------c-cce
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD----------EFV------P-QRT 196 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~------~-~~~ 196 (1425)
.++|+||||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|..+. ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999998 999999986441 111 1 246
Q ss_pred EEEEccCC--CCCCCCCHHHHHHhhhhhc-CCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH
Q 047682 197 AAYISQHD--VHIGEMTVRETLAFSARCQ-GVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIK 273 (1425)
Q Consensus 197 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 273 (1425)
++||+|++ .+++.+||+||+.++.+.. +.. ..+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------------------------------REEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 99999986 5788899999999975432 110 0112335677899
Q ss_pred HhCCcc---cccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEE
Q 047682 274 VLGLDV---CADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350 (1425)
Q Consensus 274 ~lgL~~---~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~ 350 (1425)
.+||++ ..+. .+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+. +||.+
T Consensus 152 ~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~-tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSM-GVIFI 225 (623)
T ss_pred HCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCC-EEEEE
Confidence 999964 2343 44569999999999999999999999999999999999999999999999764444 55668
Q ss_pred ecChhhHHhhcCeEEEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHH
Q 047682 351 LQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEF 430 (1425)
Q Consensus 351 ~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 430 (1425)
+|+..++.++||+|++|++|++++.|+++++.+ .|.+....+++
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~---------------------------- 269 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALL---------------------------- 269 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhh----------------------------
Confidence 999999999999999999999999998776521 00000000000
Q ss_pred HHHHHHchhhhhhhhccCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Q 047682 431 SDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLF 510 (1425)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f 510 (1425)
. . .|
T Consensus 270 -~----~-----------~~------------------------------------------------------------ 273 (623)
T PRK10261 270 -A----A-----------VP------------------------------------------------------------ 273 (623)
T ss_pred -h----c-----------cC------------------------------------------------------------
Confidence 0 0 00
Q ss_pred hccCCCCcccccccchhhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHH
Q 047682 511 FRTKMHRDSVTNGGIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVI 590 (1425)
Q Consensus 511 ~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~ 590 (1425)
.. ...
T Consensus 274 ---~~--~~~---------------------------------------------------------------------- 278 (623)
T PRK10261 274 ---QL--GAM---------------------------------------------------------------------- 278 (623)
T ss_pred ---cc--ccc----------------------------------------------------------------------
Confidence 00 000
Q ss_pred hhhhccCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhH
Q 047682 591 LNYYVIGFDPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWC 670 (1425)
Q Consensus 591 i~Y~~~gl~~~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~i 670 (1425)
T Consensus 279 -------------------------------------------------------------------------------- 278 (623)
T PRK10261 279 -------------------------------------------------------------------------------- 278 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHhhcCCcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 047682 671 SPLMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQA 750 (1425)
Q Consensus 671 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~ 750 (1425)
.+.... ......
T Consensus 279 ---------------~~~~~~----~~~~~~------------------------------------------------- 290 (623)
T PRK10261 279 ---------------KGLDYP----RRFPLI------------------------------------------------- 290 (623)
T ss_pred ---------------ccccCC----cccccc-------------------------------------------------
Confidence 000000 000000
Q ss_pred eeecccccccccccCCCccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEe
Q 047682 751 VISEESQSNECDNRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFE 830 (1425)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 830 (1425)
. . . .. ... .. ..... ....+ .+ -++++
T Consensus 291 -------~---~-----------------~-~~-----~~~-~~-----------~~~~~--~~~~~-----~~-~L~~~ 317 (623)
T PRK10261 291 -------S---L-----------------E-HP-----AKQ-EP-----------PIEQD--TVVDG-----EP-ILQVR 317 (623)
T ss_pred -------c---c-----------------c-cc-----ccc-Cc-----------ccccc--cccCC-----Cc-eEEEe
Confidence 0 0 0 00 000 00 00000 00000 11 37888
Q ss_pred cceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---
Q 047682 831 DVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ--- 907 (1425)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~--- 907 (1425)
|+++.++..... .+.....+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 318 ~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~ 393 (623)
T PRK10261 318 NLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSP 393 (623)
T ss_pred eeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCH
Confidence 988877421000 0000012469999999999999999999999999999999999765 347999999986532
Q ss_pred ---ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCH
Q 047682 908 ---ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 908 ---~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSg 981 (1425)
..+++.++|++|++ .+++.+||.|++.+....+. ....++.++.+.++++.+||. +..+.. +..|||
T Consensus 394 ~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSg 466 (623)
T PRK10261 394 GKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSG 466 (623)
T ss_pred HHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 12356799999996 57889999999987643321 112344556788999999996 455655 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.+|+|++|++ |++++
T Consensus 467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~ 544 (623)
T PRK10261 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVE 544 (623)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999987 57789999999997 68899
Q ss_pred ECCCC
Q 047682 1061 VGPLG 1065 (1425)
Q Consensus 1061 ~G~~~ 1065 (1425)
.|+..
T Consensus 545 ~g~~~ 549 (623)
T PRK10261 545 IGPRR 549 (623)
T ss_pred ecCHH
Confidence 99863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=630.65 Aligned_cols=458 Identities=21% Similarity=0.290 Sum_probs=346.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 45999999999999999999999999999999999999998 9999999998765432 2469999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++..... ..+.. +..+ ..+....++++++.+||++..++.++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~--------------~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV--------------NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhcccccc--ccccc--------------cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999987532100 00000 0000 00112346778999999877776664
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+ ++|+.++|+..++.++||+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EG-TAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999865 34 4555578999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCC
Q 047682 370 GQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRT 449 (1425)
Q Consensus 370 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (1425)
|++++.|+++++.. .+..+.
T Consensus 221 G~i~~~g~~~~~~~--------------------------------------------~~~~~~---------------- 240 (510)
T PRK09700 221 GSSVCSGMVSDVSN--------------------------------------------DDIVRL---------------- 240 (510)
T ss_pred CEEeeecchhhCCH--------------------------------------------HHHHHH----------------
Confidence 99998887654310 000000
Q ss_pred CCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhH
Q 047682 450 PFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGA 529 (1425)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~ 529 (1425)
+ .. ...
T Consensus 241 -----------------------------------------------------------~-~~-----~~~--------- 246 (510)
T PRK09700 241 -----------------------------------------------------------M-VG-----REL--------- 246 (510)
T ss_pred -----------------------------------------------------------h-cC-----CCc---------
Confidence 0 00 000
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHH
Q 047682 530 LFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQY 609 (1425)
Q Consensus 530 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 609 (1425)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCc
Q 047682 610 LLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNS 689 (1425)
Q Consensus 610 l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 689 (1425)
...
T Consensus 247 -----------------------------------------------------------------------------~~~ 249 (510)
T PRK09700 247 -----------------------------------------------------------------------------QNR 249 (510)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred ccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCCCcc
Q 047682 690 WQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGGTL 769 (1425)
Q Consensus 690 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1425)
..
T Consensus 250 ~~------------------------------------------------------------------------------ 251 (510)
T PRK09700 250 FN------------------------------------------------------------------------------ 251 (510)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccC
Q 047682 770 QLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLD 849 (1425)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 849 (1425)
.... . .. . . . .+.-++++|+++.+
T Consensus 252 ----------~~~~-----~-----------------~~-~--~-~-------~~~~l~~~~l~~~~------------- 275 (510)
T PRK09700 252 ----------AMKE-----N-----------------VS-N--L-A-------HETVFEVRNVTSRD------------- 275 (510)
T ss_pred ----------cccc-----c-----------------cc-c--C-C-------CCcEEEEeCccccC-------------
Confidence 0000 0 00 0 0 0 00136677776431
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeecC---CC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----ETFARISGYCEQN---DI 922 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---~~ 922 (1425)
+ .+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|+ ..
T Consensus 276 ~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 351 (510)
T PRK09700 276 R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNG 351 (510)
T ss_pred C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCC
Confidence 1 279999999999999999999999999999999997653 47999999976532 1234568999998 45
Q ss_pred CCCCCCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHHHHHHHHHHHhh
Q 047682 923 HSPNVTVYESLLYSAWLR---LPP--D-VDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr---~~~--~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~ 995 (1425)
+++.+||+|++.+....+ ... . ......++.++++++.+++. +..+..+ ..|||||||||+||++|+.
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~ 426 (510)
T PRK09700 352 FFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCC 426 (510)
T ss_pred CcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhc
Confidence 788999999998653211 000 0 11222335578999999996 6666664 4799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+|+||+|||||+|||+.++..+++.|++++++|.|||++|||+. ++.+.||++++|++ |+++..++.
T Consensus 427 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 427 CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999999999999999999999999878999999999986 57889999999997 577888765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=628.30 Aligned_cols=450 Identities=20% Similarity=0.311 Sum_probs=345.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 45999999999999999999999999999999999999998 9999999988754321 3569999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++.........+ + ..+...+++++++.+||++..+..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI-------------------D-----------WKKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCcc-------------------C-----------HHHHHHHHHHHHHHcCCCCCccCchh---
Confidence 99999999864321000000 0 00112346678999999887776655
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.++||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999864 3 44556678999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCC
Q 047682 370 GQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRT 449 (1425)
Q Consensus 370 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (1425)
|+++..|+.+++.. ++..+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998775432200 0000000
Q ss_pred CCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhH
Q 047682 450 PFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGA 529 (1425)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~ 529 (1425)
+
T Consensus 238 -------------------------------------------------------------~------------------ 238 (501)
T PRK10762 238 -------------------------------------------------------------V------------------ 238 (501)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHH
Q 047682 530 LFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQY 609 (1425)
Q Consensus 530 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 609 (1425)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK10762 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCc
Q 047682 610 LLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNS 689 (1425)
Q Consensus 610 l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 689 (1425)
+..
T Consensus 239 -----------------------------------------------------------------------------~~~ 241 (501)
T PRK10762 239 -----------------------------------------------------------------------------GRK 241 (501)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 000
Q ss_pred ccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCCCcc
Q 047682 690 WQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGGTL 769 (1425)
Q Consensus 690 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1425)
...
T Consensus 242 ~~~----------------------------------------------------------------------------- 244 (501)
T PRK10762 242 LED----------------------------------------------------------------------------- 244 (501)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccC
Q 047682 770 QLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLD 849 (1425)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 849 (1425)
. .. . ... + . .+..++++|++.
T Consensus 245 ----------~--------~~--~------------~~~----~-~-------~~~~l~~~~l~~--------------- 265 (501)
T PRK10762 245 ----------Q--------YP--R------------LDK----A-P-------GEVRLKVDNLSG--------------- 265 (501)
T ss_pred ----------c--------cc--c------------ccc----C-C-------CCcEEEEeCccc---------------
Confidence 0 00 0 000 0 0 001355666541
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCC---C
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE----TFARISGYCEQND---I 922 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~ 922 (1425)
.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.+||++|++ .
T Consensus 266 ---~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 340 (501)
T PRK10762 266 ---PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDG 340 (501)
T ss_pred ---CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCC
Confidence 268999999999999999999999999999999997653 479999999775321 2345689999995 5
Q ss_pred CCCCCCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 047682 923 HSPNVTVYESLLYSAWLRLP---PDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 998 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~---~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ 998 (1425)
+++.+||.|++.+....... .....++.++.++++++.++|. +..+..+ ..|||||||||+||++|+.+|+
T Consensus 341 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~ 415 (501)
T PRK10762 341 LVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPK 415 (501)
T ss_pred CcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCC
Confidence 77889999999875311100 0122233345688999999995 5666653 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCC
Q 047682 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGR 1066 (1425)
Q Consensus 999 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~ 1066 (1425)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++ |++++.|+..+
T Consensus 416 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 416 VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999999999999999878999999999986 57889999999996 67888888754
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=622.93 Aligned_cols=464 Identities=22% Similarity=0.294 Sum_probs=345.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCCCc-------cceEEEEccCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEFVP-------QRTAAYISQHD 204 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 204 (1425)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 469999999999999999999999999999999999998610 128999999998765321 24699999985
Q ss_pred C--CCCCCCHHHHHHhhhhhc-CCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc-
Q 047682 205 V--HIGEMTVRETLAFSARCQ-GVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC- 280 (1425)
Q Consensus 205 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 280 (1425)
. +.+.+||+|++.+..... +. . ..+...+++++++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGM----------R------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCC----------C------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 3 567789999988643211 10 0 00123346788999999752
Q ss_pred --ccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHH
Q 047682 281 --ADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358 (1425)
Q Consensus 281 --~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~ 358 (1425)
.++.+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+. +||.++|+..++.
T Consensus 148 ~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~-tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNM-GLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCC-eEEEEcCcHHHHH
Confidence 35444 469999999999999999999999999999999999999999999998764344 4555788888999
Q ss_pred hhcCeEEEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHch
Q 047682 359 DLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFH 438 (1425)
Q Consensus 359 ~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1425)
++||+|++|++|++++.|+.+++.+. |.. ...
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~---------------------------------~~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH---------------------------------PYT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC---------------------------------HHH-------
Confidence 99999999999999999887655210 000 000
Q ss_pred hhhhhhhccCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 047682 439 VGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRD 518 (1425)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~ 518 (1425)
+.+ +...
T Consensus 254 -----------------------------------------~~~----------------------------~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE---- 260 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC----
Confidence 000 0000
Q ss_pred ccccccchhhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCc
Q 047682 519 SVTNGGIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGF 598 (1425)
Q Consensus 519 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl 598 (1425)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHH
Q 047682 599 DPNVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQN 678 (1425)
Q Consensus 599 ~~~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 678 (1425)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeeccccc
Q 047682 679 GLAVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQS 758 (1425)
Q Consensus 679 al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~ 758 (1425)
. . .
T Consensus 261 ------------~----~--------------------------------------------------~----------- 263 (529)
T PRK15134 261 ------------P----S--------------------------------------------------G----------- 263 (529)
T ss_pred ------------c----c--------------------------------------------------c-----------
Confidence 0 0 0
Q ss_pred ccccccCCCccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeec
Q 047682 759 NECDNRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDM 838 (1425)
Q Consensus 759 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 838 (1425)
. . . .. . . . + .+ -++++|+++.++.
T Consensus 264 ---------------------~--~-----~-----------------~~-~--~-~-~-----~~-~l~~~~l~~~~~~ 287 (529)
T PRK15134 264 ---------------------D--P-----V-----------------PL-P--E-P-A-----SP-LLDVEQLQVAFPI 287 (529)
T ss_pred ---------------------c--c-----c-----------------cc-C--C-C-C-----CC-cccccCcEEEeec
Confidence 0 0 0 00 0 0 0 0 00 1455666655421
Q ss_pred chhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc------cccc
Q 047682 839 PQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE------TFAR 912 (1425)
Q Consensus 839 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~ 912 (1425)
..+. ..+ ..+.+.+|+|||++|++||++||+||||||||||+++|+|..+ .+|+|.++|.++... .+++
T Consensus 288 ~~~~-~~~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~ 362 (529)
T PRK15134 288 RKGI-LKR-TVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRH 362 (529)
T ss_pred Cccc-ccc-ccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhh
Confidence 0000 000 0012469999999999999999999999999999999999763 379999999765321 1245
Q ss_pred eEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHHHHHHH
Q 047682 913 ISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTI 989 (1425)
Q Consensus 913 ~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~i 989 (1425)
.+||++|+. .+++.+||.|++.+....+.. ..+..+.++.++++++.++|. +..+.. +..|||||||||+|
T Consensus 363 ~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~l 436 (529)
T PRK15134 363 RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAI 436 (529)
T ss_pred ceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHH
Confidence 689999996 477889999999886533211 122334456688999999997 455654 45799999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 990 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 990 a~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 437 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 437 ARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999865 899999999986 57788999999997 678888875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=623.75 Aligned_cols=217 Identities=23% Similarity=0.319 Sum_probs=174.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEc-Ccc-
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKIS-GYP- 904 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~-g~~- 904 (1425)
++++|+++.++.. ..+.+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 6677777766310 0122469999999999999999999999999999999999765 347999996 532
Q ss_pred --CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccc
Q 047682 905 --KKQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-----LRQSLV 971 (1425)
Q Consensus 905 --~~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~~ 971 (1425)
... ...++.+||++|++.+++.+||.|++.+...+. ...+..++.++++++.++|.+ ..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999988889999999998754321 222333456788999999975 34444
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEE
Q 047682 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1050 (1425)
Q Consensus 972 g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~ 1050 (1425)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++||++. .+.+.+|+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999999765 899999999986 5778999999
Q ss_pred EEeCCcEEEEECCC
Q 047682 1051 LMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1051 ~l~~Gg~~~y~G~~ 1064 (1425)
+|++ |+++..|+.
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9996 678888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=621.25 Aligned_cols=453 Identities=21% Similarity=0.303 Sum_probs=343.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 2469999999889999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++.... .+....++++++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~~--------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPKR--------------------------------------QASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhcccccc--------------------------------------hHHHHHHHHHHHHcCCCccccCChh---
Confidence 99999998853100 0012235678999999877776654
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999865 3 44566678999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCC
Q 047682 370 GQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRT 449 (1425)
Q Consensus 370 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (1425)
|++++.|+.+++... + ..+.+.. .
T Consensus 216 G~i~~~g~~~~~~~~---------------~-----------------------------~~~~~~~------------~ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------D-----------------------------IIQAITP------------A 239 (510)
T ss_pred CEEEEecChHHcCHH---------------H-----------------------------HHHHHhC------------c
Confidence 999999877654210 0 0000000 0
Q ss_pred CCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhH
Q 047682 450 PFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGA 529 (1425)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~ 529 (1425)
. .. .....
T Consensus 240 ----~-~~------------------------------------------------------------~~~~~------- 247 (510)
T PRK15439 240 ----A-RE------------------------------------------------------------KSLSA------- 247 (510)
T ss_pred ----c-cc------------------------------------------------------------ccccc-------
Confidence 0 00 00000
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHH
Q 047682 530 LFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQY 609 (1425)
Q Consensus 530 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 609 (1425)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCc
Q 047682 610 LLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNS 689 (1425)
Q Consensus 610 l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 689 (1425)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCCCcc
Q 047682 690 WQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGGTL 769 (1425)
Q Consensus 690 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1425)
.+.. + .
T Consensus 248 ~~~~-------------------------~---------------------------------------------~---- 253 (510)
T PRK15439 248 SQKL-------------------------W---------------------------------------------L---- 253 (510)
T ss_pred cccc-------------------------c---------------------------------------------c----
Confidence 0000 0 0
Q ss_pred ccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccC
Q 047682 770 QLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLD 849 (1425)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 849 (1425)
..+. . .. .. + . .+.-++.+|++.
T Consensus 254 ----------~~~~-----~-----------------~~-~~-~--~------~~~~l~~~~l~~--------------- 276 (510)
T PRK15439 254 ----------ELPG-----N-----------------RR-QQ-A--A------GAPVLTVEDLTG--------------- 276 (510)
T ss_pred ----------cccc-----c-----------------cc-cc-C--C------CCceEEEeCCCC---------------
Confidence 0000 0 00 00 0 0 001266666651
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCC---C
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE----TFARISGYCEQND---I 922 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~ 922 (1425)
.+|+|||++|++|+++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+. .
T Consensus 277 ---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 351 (510)
T PRK15439 277 ---EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSG 351 (510)
T ss_pred ---CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCC
Confidence 158999999999999999999999999999999997653 479999999865321 1234689999984 4
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEE
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ill 1001 (1425)
+++.+|+.|++......+..........++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|++|+
T Consensus 352 l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLl 426 (510)
T PRK15439 352 LYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLI 426 (510)
T ss_pred ccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEE
Confidence 788899999986421111111011222345678999999997 5666653 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.||++++|++ |++++.|..+
T Consensus 427 LDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 427 VDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred ECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999999888999999999997 58889999999986 6888888654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=617.47 Aligned_cols=458 Identities=19% Similarity=0.256 Sum_probs=343.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCccCCCCCc----cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP--SLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 4599999999999999999999999999999999999986 5 8999999998765432 35699999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc-ccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCA-DTMVG 286 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg 286 (1425)
+.+||+||+.++......+... + ..+...+++++++.+||++.. ++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~- 139 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGRM-------------------A-----------YNAMYLRAKNLLRELQLDADNVTRPV- 139 (500)
T ss_pred CCCcHHHHHHhhcccccccccc-------------------C-----------HHHHHHHHHHHHHHcCCCCCcccCch-
Confidence 9999999998864321000000 0 001123466789999997654 3434
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.++||+|++
T Consensus 140 ----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~ 213 (500)
T TIGR02633 140 ----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICV 213 (500)
T ss_pred ----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEE
Confidence 45999999999999999999999999999999999999999999999864 3 44556678999999999999999
Q ss_pred EcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhc
Q 047682 367 ISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDG 446 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (1425)
|++|++++.|+.++... ....+
T Consensus 214 l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~-------------- 235 (500)
T TIGR02633 214 IRDGQHVATKDMSTMSE--------------------------------------------DDIIT-------------- 235 (500)
T ss_pred EeCCeEeeecCcccCCH--------------------------------------------HHHHH--------------
Confidence 99999987654321100 00000
Q ss_pred cCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccch
Q 047682 447 LRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIY 526 (1425)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~ 526 (1425)
. +.
T Consensus 236 ----------------------------------------~----------------------~~--------------- 238 (500)
T TIGR02633 236 ----------------------------------------M----------------------MV--------------- 238 (500)
T ss_pred ----------------------------------------H----------------------Hh---------------
Confidence 0 00
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHH
Q 047682 527 VGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAF 606 (1425)
Q Consensus 527 ~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff 606 (1425)
+
T Consensus 239 ----------------------------------------------------------------------~--------- 239 (500)
T TIGR02633 239 ----------------------------------------------------------------------G--------- 239 (500)
T ss_pred ----------------------------------------------------------------------C---------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhc
Q 047682 607 KQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFL 686 (1425)
Q Consensus 607 ~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 686 (1425)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T TIGR02633 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCC
Q 047682 687 GNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTG 766 (1425)
Q Consensus 687 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1425)
.....
T Consensus 240 -~~~~~-------------------------------------------------------------------------- 244 (500)
T TIGR02633 240 -REITS-------------------------------------------------------------------------- 244 (500)
T ss_pred -ccccc--------------------------------------------------------------------------
Confidence 00000
Q ss_pred CccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhcc
Q 047682 767 GTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQG 846 (1425)
Q Consensus 767 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 846 (1425)
... . .. . + .. ..-++++|+++.+..
T Consensus 245 -------------~~~------~----------------~~--~--~-~~-------~~~l~~~~l~~~~~~-------- 269 (500)
T TIGR02633 245 -------------LYP------H----------------EP--H--E-IG-------DVILEARNLTCWDVI-------- 269 (500)
T ss_pred -------------ccc------c----------------cc--c--C-CC-------CceEEEeCCcccccc--------
Confidence 000 0 00 0 0 00 012667777654310
Q ss_pred ccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCC-
Q 047682 847 VLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----ETFARISGYCEQND- 921 (1425)
Q Consensus 847 ~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~- 921 (1425)
.+++.+|+|+|++|++||++||+|||||||||||++|+|..++ +.+|+|.++|.+... ...++.+||++|+.
T Consensus 270 --~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 346 (500)
T TIGR02633 270 --NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRK 346 (500)
T ss_pred --cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchh
Confidence 0123589999999999999999999999999999999997642 137999999977532 12345689999995
Q ss_pred --CCCCCCCHHHHHHHHhh--ccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHHHHHHHHHHHhhC
Q 047682 922 --IHSPNVTVYESLLYSAW--LRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 996 (1425)
Q Consensus 922 --~~~~~lTv~E~l~~~~~--lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~ 996 (1425)
.+++.+||+|++.+... ............++.++++++.+++.+ ..+..+ ..||||||||++||++|+.+
T Consensus 347 ~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 347 RHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred hCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhC
Confidence 57889999999987532 110011223334566889999999964 456553 47999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 997 p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|++|+|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++..
T Consensus 422 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 422 PRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999999999999999888999999999996 58889999999987 5777777653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-63 Score=615.53 Aligned_cols=452 Identities=21% Similarity=0.290 Sum_probs=342.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC----ccceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV----PQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999998 999999999875432 13579999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++......+. . + ..+....++.+++.+||++..+..++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------V-------------N-----------RRLLNYEAREQLEHLGVDIDPDTPLK--- 139 (501)
T ss_pred CCHHHHHHhcccccccCC-------C-------------C-----------HHHHHHHHHHHHHHcCCCCCcCCchh---
Confidence 999999998532100000 0 0 00112346678999999876665554
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.++||+|++|++
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 140 --YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999864 3 44556678888899999999999999
Q ss_pred CeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccCC
Q 047682 370 GQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRT 449 (1425)
Q Consensus 370 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (1425)
|+++..++..+. .+.++..+.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHHH----------------
Confidence 999754421000 000000000
Q ss_pred CCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhhH
Q 047682 450 PFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGA 529 (1425)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g~ 529 (1425)
+.
T Consensus 237 ------------------------------------------------------------~~------------------ 238 (501)
T PRK11288 237 ------------------------------------------------------------MV------------------ 238 (501)
T ss_pred ------------------------------------------------------------hc------------------
Confidence 00
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHHH
Q 047682 530 LFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQY 609 (1425)
Q Consensus 530 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 609 (1425)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK11288 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCCc
Q 047682 610 LLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGNS 689 (1425)
Q Consensus 610 l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 689 (1425)
+..
T Consensus 239 -----------------------------------------------------------------------------~~~ 241 (501)
T PRK11288 239 -----------------------------------------------------------------------------GRE 241 (501)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 000
Q ss_pred ccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCCCcc
Q 047682 690 WQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGGTL 769 (1425)
Q Consensus 690 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1425)
.... .
T Consensus 242 ~~~~-----------------------------------------------------------------------~---- 246 (501)
T PRK11288 242 IGDI-----------------------------------------------------------------------Y---- 246 (501)
T ss_pred cccc-----------------------------------------------------------------------c----
Confidence 0000 0
Q ss_pred ccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhccccC
Q 047682 770 QLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLD 849 (1425)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 849 (1425)
. . . +... .+..++++|+++
T Consensus 247 ----------~--------~-----------------~-----~~~~------~~~~l~~~~~~~--------------- 265 (501)
T PRK11288 247 ----------G--------Y-----------------R-----PRPL------GEVRLRLDGLKG--------------- 265 (501)
T ss_pred ----------c--------c-----------------c-----ccCC------CCcEEEEecccc---------------
Confidence 0 0 0 0000 011356666642
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCC---C
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----ETFARISGYCEQND---I 922 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~ 922 (1425)
..+++|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .
T Consensus 266 --~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 341 (501)
T PRK11288 266 --PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEG 341 (501)
T ss_pred --CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCC
Confidence 138999999999999999999999999999999999765 357999999976532 12245689999985 4
Q ss_pred CCCCCCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 047682 923 HSPNVTVYESLLYSAWLRL-PPD--VDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 998 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~-~~~--~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ 998 (1425)
+++.+|+.|++.+...... +.. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+
T Consensus 342 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~ 416 (501)
T PRK11288 342 IIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMK 416 (501)
T ss_pred CcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCC
Confidence 7889999999986532111 001 11223345678999999994 5667664 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCC
Q 047682 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRH 1067 (1425)
Q Consensus 999 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~ 1067 (1425)
+|+|||||+|||+.++..+++.|+++++.|.|||++|||+. ++.+.+|++++|++ |++++.|..++.
T Consensus 417 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 417 VILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 99999999999999999999999999888999999999986 58889999999996 678899987643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=669.82 Aligned_cols=210 Identities=18% Similarity=0.246 Sum_probs=176.8
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 36999999998852 23469999999999999999999999999999999999764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
+.+ ...++.++|+||++.+|+. |+||||.... ..+ ++.+.++++.++|.+. .|+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 4567889999999999975 9999994311 122 3346788888888643 3555554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+..+||||||||++|||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999875 4799999999985 5567999999997
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++.+|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 688999976
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-62 Score=666.14 Aligned_cols=211 Identities=24% Similarity=0.268 Sum_probs=177.4
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 36999999998841 22359999999999999999999999999999999999866 357999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
+.+ ..+++.+|||||++.+|.. |++|||... .+.++ +.+.++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 653 4678899999999999875 999999531 12232 347788888888654 35566643
Q ss_pred CCCcCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 975 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
..+||||||||++|||||+++ |+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 457999999999999999996 89999999999999999999999999875 4799999999984 567899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |+++.+|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 6 789999986
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=606.06 Aligned_cols=450 Identities=17% Similarity=0.263 Sum_probs=340.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999998 9999999998754321 3579999999888999
Q ss_pred CCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 210 MTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 210 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
+||+||+.++... .+.. . + ..+....++.+++.+|+++..++.++
T Consensus 88 ~tv~~~l~~~~~~~~~~~--~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF--V-------------------D-----------QDKMYRDTKAIFDELDIDIDPRAKVA-- 133 (491)
T ss_pred CCHHHHhhcccccccccc--c-------------------C-----------HHHHHHHHHHHHHHcCCCCCccCchh--
Confidence 9999999875311 0000 0 0 00112346678999999877766554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+. +++.++|+.+++.++||+|++|+
T Consensus 134 ---~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~-tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGC-GIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC-EEEEEecCHHHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999864 344 45557899999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhccC
Q 047682 369 EGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLR 448 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1425)
+|+++..|+.+++.. ++..+.+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~-------------- 230 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAMM-------------- 230 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHHH--------------
Confidence 999998776432200 0000000
Q ss_pred CCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccchhh
Q 047682 449 TPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVG 528 (1425)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~~g 528 (1425)
.
T Consensus 231 --------------------------------------------------------------~----------------- 231 (491)
T PRK10982 231 --------------------------------------------------------------V----------------- 231 (491)
T ss_pred --------------------------------------------------------------h-----------------
Confidence 0
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHHHH
Q 047682 529 ALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAFKQ 608 (1425)
Q Consensus 529 ~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 608 (1425)
T Consensus 232 -------------------------------------------------------------------------------- 231 (491)
T PRK10982 232 -------------------------------------------------------------------------------- 231 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhcCC
Q 047682 609 YLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFLGN 688 (1425)
Q Consensus 609 ~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 688 (1425)
+.
T Consensus 232 ------------------------------------------------------------------------------~~ 233 (491)
T PRK10982 232 ------------------------------------------------------------------------------GR 233 (491)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCCCc
Q 047682 689 SWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGGT 768 (1425)
Q Consensus 689 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1425)
... .
T Consensus 234 ~~~---------------------------------------------------------------------------~- 237 (491)
T PRK10982 234 SLT---------------------------------------------------------------------------Q- 237 (491)
T ss_pred Ccc---------------------------------------------------------------------------c-
Confidence 000 0
Q ss_pred cccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhcccc
Q 047682 769 LQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVL 848 (1425)
Q Consensus 769 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 848 (1425)
.. + . .. . . . .+..++++|+++..
T Consensus 238 -----------~~-~-----~----------------~~--~--~-~-------~~~~i~~~~l~~~~------------ 260 (491)
T PRK10982 238 -----------RF-P-----D----------------KE--N--K-P-------GEVILEVRNLTSLR------------ 260 (491)
T ss_pred -----------cc-c-----c----------------cc--C--C-C-------CCcEEEEeCccccc------------
Confidence 00 0 0 00 0 0 0 01136777776531
Q ss_pred CCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCC---
Q 047682 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE----TFARISGYCEQND--- 921 (1425)
Q Consensus 849 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~--- 921 (1425)
+.+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|+.
T Consensus 261 ---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~ 335 (491)
T PRK10982 261 ---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRST 335 (491)
T ss_pred ---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhC
Confidence 248999999999999999999999999999999999765 3479999999765421 1245589999985
Q ss_pred CCCCCCCHHHHHHHHhh--ccCCCC-CCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHHHHHHHHHHHhhCC
Q 047682 922 IHSPNVTVYESLLYSAW--LRLPPD-VDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 997 (1425)
Q Consensus 922 ~~~~~lTv~E~l~~~~~--lr~~~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p 997 (1425)
.+++.+|+.++..+.-. ...... ......++.++++++.+++. +..+.. +..|||||||||+||++|+.+|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 336 GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred CcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCC
Confidence 35788888877432210 000001 12233345678899999985 345555 4579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 998 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 998 ~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
+||+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|++++|++ |+++..++..
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 999999999999999999999999999888999999999986 57889999999997 5777777654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-61 Score=597.45 Aligned_cols=213 Identities=19% Similarity=0.303 Sum_probs=165.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+. ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378889887763 24599999999999999999999999999999999996431 1379999999764
Q ss_pred Cc----ccccceEEEeecCCCCCC--CCCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCC
Q 047682 906 KQ----ETFARISGYCEQNDIHSP--NVTVYESLLYSAWL--RLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGV 976 (1425)
Q Consensus 906 ~~----~~~~~~~gyv~Q~~~~~~--~lTv~E~l~~~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 976 (1425)
.. ...++.+||++|++.+++ ..|++|++.+...- ....... ...++.++++++.++|.+ ..+.. +
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~ 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----F 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----h
Confidence 21 123457899999876543 35777766543210 1111112 223456889999999987 66665 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHH-hcCEEEEEeC
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 1054 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~fD~v~~l~~ 1054 (1425)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++| .|||+++|+++ ++.+ .+|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5799999999999999999999999999999999999999999999998776 47999999986 4655 5899999997
Q ss_pred CcEEEE
Q 047682 1055 GGYEIY 1060 (1425)
Q Consensus 1055 Gg~~~y 1060 (1425)
| ++++
T Consensus 479 G-~i~~ 483 (490)
T PRK10938 479 G-DIYR 483 (490)
T ss_pred C-ceEE
Confidence 5 5444
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-59 Score=515.59 Aligned_cols=471 Identities=25% Similarity=0.325 Sum_probs=367.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCccCCCCCcc-------ceEEEEcc
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP--SLKLSGRVTYNGHNMDEFVPQ-------RTAAYISQ 202 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 202 (1425)
....++++|||.+++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|.++-....+ ..|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 346799999999999999999999999999999999999875 345689999999987554322 47999999
Q ss_pred CC--CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc
Q 047682 203 HD--VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC 280 (1425)
Q Consensus 203 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 280 (1425)
++ .+-|-.|+...|.-..++... .....++.++-++|+..|+++.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCch
Confidence 96 566777888877766554311 0112234567788999999887
Q ss_pred ccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 047682 281 ADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360 (1425)
Q Consensus 281 ~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~ 360 (1425)
.... +.++.+|||||||||.||.||+.+|++|+-||||++||.....+|.+.|+++.++.| ..++.|+|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g-Ma~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC-cEEEEEeccHHHHHHh
Confidence 6544 567889999999999999999999999999999999999999999999999987764 5566689999999999
Q ss_pred cCeEEEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhh
Q 047682 361 FDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVG 440 (1425)
Q Consensus 361 ~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1425)
+|+|+||.+|+++++|+.+++.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998877632 1110 000
Q ss_pred hhhhhccCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 047682 441 QKLGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSV 520 (1425)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~ 520 (1425)
+.+.+
T Consensus 255 r~Ll~--------------------------------------------------------------------------- 259 (534)
T COG4172 255 RKLLA--------------------------------------------------------------------------- 259 (534)
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 00000
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCC
Q 047682 521 TNGGIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600 (1425)
Q Consensus 521 ~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~ 600 (1425)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHH
Q 047682 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGL 680 (1425)
Q Consensus 601 ~~~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 680 (1425)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeeccccccc
Q 047682 681 AVNEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNE 760 (1425)
Q Consensus 681 ~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 760 (1425)
.++.|
T Consensus 260 -----------------aeP~g---------------------------------------------------------- 264 (534)
T COG4172 260 -----------------AEPSG---------------------------------------------------------- 264 (534)
T ss_pred -----------------cCCCC----------------------------------------------------------
Confidence 00000
Q ss_pred ccccCCCccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecch
Q 047682 761 CDNRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQ 840 (1425)
Q Consensus 761 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 840 (1425)
.. ... + +..+.-++.+|++..++.+.
T Consensus 265 ----------------------------~~-----------------~p~--~-------~~~~~ll~~~~v~v~f~i~~ 290 (534)
T COG4172 265 ----------------------------DP-----------------PPL--P-------EDAPVLLEVEDLRVWFPIKG 290 (534)
T ss_pred ----------------------------CC-----------------CCC--C-------CCCCceEEecceEEEEecCC
Confidence 00 000 0 00122345555555554432
Q ss_pred hhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc------ccccceE
Q 047682 841 EMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ------ETFARIS 914 (1425)
Q Consensus 841 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~ 914 (1425)
.+-.. ..+...++++||++.++||.+||+|.||||||||=.+|.+...+ +|+|.++|.++.. ...++.+
T Consensus 291 g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~m 365 (534)
T COG4172 291 GFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRM 365 (534)
T ss_pred ccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhc
Confidence 21111 11345799999999999999999999999999999999987653 5999999988653 2356778
Q ss_pred EEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHH
Q 047682 915 GYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 992 (1425)
Q Consensus 915 gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~ 992 (1425)
-.|+||+ .+.|.+||.|-+.-+.....| ..+..++++++.++|+.+||++-... . .+.++|||||||++||||
T Consensus 366 QvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~--R--YPhEFSGGQRQRIAIARA 440 (534)
T COG4172 366 QVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRN--R--YPHEFSGGQRQRIAIARA 440 (534)
T ss_pred eEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhh--c--CCcccCcchhhHHHHHHH
Confidence 9999997 467999999999877666654 56788899999999999999863222 1 256899999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 993 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 993 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+-+|++++||||||.||-.-+.+|.++|+++.++ |.+-++++||.. -+-.+||+|+||++ |++|..||.
T Consensus 441 liLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 441 LILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 99999999999999999999999999999999754 899999999986 47789999999996 799999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=582.30 Aligned_cols=201 Identities=22% Similarity=0.307 Sum_probs=163.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488899887763 2469999999999999999999999999999999999765 34799998541
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHH
Q 047682 906 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGq 983 (1425)
..+||++|+. .+++.+||+|++.+....+. .... ....+++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 67889999999987643221 1111 122457899999964 44554 35799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE-EEC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVG 1062 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~-y~G 1062 (1425)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++. | |||++||++. .+.+.+|++++|++||++. |.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999986 5778899999999766665 555
Q ss_pred C
Q 047682 1063 P 1063 (1425)
Q Consensus 1063 ~ 1063 (1425)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=578.07 Aligned_cols=199 Identities=19% Similarity=0.267 Sum_probs=163.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999988763 2459999999999999999999999999999999999765 34799999873
Q ss_pred CcccccceEEEeecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHH
Q 047682 906 KQETFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgG 982 (1425)
+.+||++|+.. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 35899999864 456799999986421 11 1 1124578899999994 555655 4579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++ +.|||++||++. .+.+.+|++++|++|+.+.+.|
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCC
Confidence 999999999999999999999999999999999999999886 459999999986 5778899999999854333877
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 519 ~~ 520 (530)
T PRK15064 519 TY 520 (530)
T ss_pred CH
Confidence 64
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-58 Score=576.12 Aligned_cols=201 Identities=20% Similarity=0.287 Sum_probs=163.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 478899887763 2469999999999999999999999999999999999765 34799998541
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHH
Q 047682 906 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGq 983 (1425)
..+||++|+. .+++.+||.|++.+...... .... +....++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 47788999999987642211 1111 123457899999964 44554 35799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE-EEC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVG 1062 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~-y~G 1062 (1425)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .|||++||++. .+.+.+|++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999986 5778899999998766665 555
Q ss_pred C
Q 047682 1063 P 1063 (1425)
Q Consensus 1063 ~ 1063 (1425)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=559.24 Aligned_cols=197 Identities=23% Similarity=0.356 Sum_probs=160.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478899887763 2469999999999999999999999999999999999765 34799998641
Q ss_pred CcccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHH
Q 047682 906 KQETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgG 982 (1425)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.. ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34566788777531 1 11 112345788999999963 455553 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE-EE
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YV 1061 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~-y~ 1061 (1425)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|++| +++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~G-~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHDG-KVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEECC-EEEEcC
Confidence 999999999999999999999999999999999999999987 349999999986 477889999999975 554 88
Q ss_pred CCC
Q 047682 1062 GPL 1064 (1425)
Q Consensus 1062 G~~ 1064 (1425)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-56 Score=556.04 Aligned_cols=211 Identities=21% Similarity=0.248 Sum_probs=171.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 377888876652 1 24899999999999999999999999999999999765 347899875
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..+.. +..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHH
Confidence 1489999998888899999999874211 111 12468899999998877776 4579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ | +....|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5778899999996 4 66666764
Q ss_pred CCCc---hhHHHHHhhC
Q 047682 1065 GRHS---SHLISYFEAI 1078 (1425)
Q Consensus 1065 ~~~~---~~~~~yf~~~ 1078 (1425)
.... ..+-.|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 3221 2344566766
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=517.88 Aligned_cols=452 Identities=21% Similarity=0.340 Sum_probs=351.3
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc----ceEEEEccC
Q 047682 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ----RTAAYISQH 203 (1425)
Q Consensus 128 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~ 203 (1425)
.++.+..++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++..-..++ .-|+.|.|+
T Consensus 15 ~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QE 91 (500)
T COG1129 15 SKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQE 91 (500)
T ss_pred eEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeec
Confidence 34455678999999999999999999999999999999999999999 99999999988765553 568999999
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
..+.|++||.|||.++......... .+..+....+..+|+.+|+....++
T Consensus 92 l~L~p~LsVaeNifLgre~~~~~g~------------------------------id~~~m~~~A~~~l~~lg~~~~~~~ 141 (500)
T COG1129 92 LSLVPNLSVAENIFLGREPTRRFGL------------------------------IDRKAMRRRARELLARLGLDIDPDT 141 (500)
T ss_pred hhccCCccHHHHhhcccccccCCCc------------------------------cCHHHHHHHHHHHHHHcCCCCChhh
Confidence 9999999999999887543210000 0112234456789999999765888
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.|++ ||+||||-|.||||+..++++++|||||+.|+...+..+++.++++.. ++..+|.++|..+|++++||+
T Consensus 142 ~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~Dr 214 (500)
T COG1129 142 LVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADR 214 (500)
T ss_pred hhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCE
Confidence 8876 999999999999999999999999999999999999999999999964 567777799999999999999
Q ss_pred EEEEcCCeEEEecCh-hHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhh
Q 047682 364 IILISEGQIVFQGPR-EHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQK 442 (1425)
Q Consensus 364 vilL~~G~iv~~G~~-~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1425)
|.||.||+++..++. ++.- .++.
T Consensus 215 itVlRDG~~v~~~~~~~~~~--------------------------------------------~~~l------------ 238 (500)
T COG1129 215 ITVLRDGRVVGTRPTAAETS--------------------------------------------EDEL------------ 238 (500)
T ss_pred EEEEeCCEEeeecccccCCC--------------------------------------------HHHH------------
Confidence 999999999866542 1110 0000
Q ss_pred hhhccCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCccccc
Q 047682 443 LGDGLRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTN 522 (1425)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~ 522 (1425)
T Consensus 239 -------------------------------------------------------------------------------- 238 (500)
T COG1129 239 -------------------------------------------------------------------------------- 238 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCH
Q 047682 523 GGIYVGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNV 602 (1425)
Q Consensus 523 ~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~ 602 (1425)
+..|+|
T Consensus 239 ---------------------------------------------------------------------v~~MvG----- 244 (500)
T COG1129 239 ---------------------------------------------------------------------VRLMVG----- 244 (500)
T ss_pred ---------------------------------------------------------------------HHHhhC-----
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHH
Q 047682 603 GRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAV 682 (1425)
Q Consensus 603 ~~ff~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 682 (1425)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeeccccccccc
Q 047682 683 NEFLGNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECD 762 (1425)
Q Consensus 683 nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 762 (1425)
...+
T Consensus 245 -----r~~~----------------------------------------------------------------------- 248 (500)
T COG1129 245 -----RELE----------------------------------------------------------------------- 248 (500)
T ss_pred -----cchh-----------------------------------------------------------------------
Confidence 0000
Q ss_pred ccCCCccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhh
Q 047682 763 NRTGGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEM 842 (1425)
Q Consensus 763 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 842 (1425)
. .. .. . ... ...+..++.++++..
T Consensus 249 -----------------~---------~~--------------~~-~--~~~------~~~~~~l~v~~l~~~------- 272 (500)
T COG1129 249 -----------------D---------LF--------------PE-P--PEE------GIGEPVLEVRNLSGG------- 272 (500)
T ss_pred -----------------h---------hc--------------cc-c--ccc------CCCCcEEEEecCCCC-------
Confidence 0 00 00 0 000 001123555554321
Q ss_pred hhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEee
Q 047682 843 KLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE----TFARISGYCE 918 (1425)
Q Consensus 843 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~ 918 (1425)
..++|+||++++||++||-|-=|||+|-|+++|.|... ...|+|.+||.+.... ..+..++||+
T Consensus 273 ----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ 340 (500)
T COG1129 273 ----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVP 340 (500)
T ss_pred ----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCC
Confidence 15789999999999999999999999999999999543 3479999999986432 3456799999
Q ss_pred cC---CCCCCCCCHHHHHHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCcccc-ccccCCCCCCcCCHHHHHHHHHHHH
Q 047682 919 QN---DIHSPNVTVYESLLYSAWLRLP-P-DVDSETRRMFLEEIMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVE 992 (1425)
Q Consensus 919 Q~---~~~~~~lTv~E~l~~~~~lr~~-~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~lSgGqrqRl~ia~~ 992 (1425)
.| +-+++.++|.||+.++...+.. . -.+....++.+++..+.+++.... +.. +..||||.+|||.|||.
T Consensus 341 EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarw 415 (500)
T COG1129 341 EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARW 415 (500)
T ss_pred cccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHH
Confidence 87 4568899999999887332322 1 245555567788999999886422 222 56799999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 993 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 993 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|..+|+||+|||||.|+|.-++.+|.+++++++++|++||++|-+.. |+..+||||++|++ |+++-
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~ 481 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVG 481 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999885 89999999999997 56544
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=553.20 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=163.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC-
Confidence 478899887763 2469999999999999999999999999999999999765 34799988 432
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHH
Q 047682 906 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGq 983 (1425)
-.+||++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..+.. +..|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTP-----VKALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHH
Confidence 1489999975 5788999999998753210 1111 123467888888885 345555 34799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-CCcEEEEEC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-RGGYEIYVG 1062 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-~Gg~~~y~G 1062 (1425)
||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++|||+. .+...+|++++|+ +|....|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 5778899999998 676667777
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=518.98 Aligned_cols=221 Identities=25% Similarity=0.296 Sum_probs=170.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 211 (1425)
+.+++|+|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+. -+++|++|+....+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCcc
Confidence 4567999999999999999999999999999999999999998 999998752 37999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCCh---HHHH-HHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI---DVFM-KALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
|.+.+.-+..- .++...+..... ...++++. +.+. .....++++.+.+++.++..||++.. ++.++
T Consensus 83 v~~~v~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~- 152 (530)
T COG0488 83 VLDYVIEGFGE-----LRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS- 152 (530)
T ss_pred HHHHHHhhhHH-----HHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh-
Confidence 99999876431 111111111111 11222211 1111 11234557777889999999999877 66665
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.||||||.||+||++|+.+|++|+||||||+||..+...+-+.|+ ...+ ++|.++|++..+-+.|++|+-+
T Consensus 153 ----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~----~~~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 153 ----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK----RYPG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCC-cEEEEeCCHHHHHHHhhheEEe
Confidence 499999999999999999999999999999999999555555554 3456 5556899999999999999999
Q ss_pred cCCeEE-EecChhHHH
Q 047682 368 SEGQIV-FQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv-~~G~~~~~~ 382 (1425)
+.|++. |.|.++...
T Consensus 224 d~g~l~~y~Gny~~~~ 239 (530)
T COG0488 224 DRGKLTPYKGNYSSYL 239 (530)
T ss_pred cCCceeEecCCHHHHH
Confidence 999875 677665543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=539.27 Aligned_cols=200 Identities=20% Similarity=0.281 Sum_probs=156.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ +++.+|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 488899988763 12369999999999999999999999999999999999765 34799988652
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqr 984 (1425)
..+||++|+.. ..+++.++.........+ ... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999752 445666664322111111 111 234678999999974 44544 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE-EECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~-y~G~ 1063 (1425)
|||+||++|+.+|++|+|||||+|||+.+...+++.|++. +.|||++||++. .+...+|++++|++ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 349999999986 47788999999997 5665 7776
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=468.42 Aligned_cols=459 Identities=22% Similarity=0.317 Sum_probs=356.9
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc----ceEEEEccCCCC
Q 047682 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ----RTAAYISQHDVH 206 (1425)
Q Consensus 131 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~ 206 (1425)
.....+++|||+++++||+++|+|.|||||||||++|.|.+.|+ +|+|.++|++++-..++ ..||+|.||..+
T Consensus 14 f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 14 FPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred cCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccc
Confidence 34678999999999999999999999999999999999999999 99999999998765553 469999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++++||.|||..+..-... .+. +......+++++.+.+||+-..|.+|+
T Consensus 91 v~~lTV~ENiiLg~e~~~~-~~~------------------------------~~~~~~~~i~~l~~~yGl~vdp~~~V~ 139 (501)
T COG3845 91 VPTLTVAENIILGLEPSKG-GLI------------------------------DRRQARARIKELSERYGLPVDPDAKVA 139 (501)
T ss_pred ccccchhhhhhhcCccccc-ccc------------------------------CHHHHHHHHHHHHHHhCCCCCccceee
Confidence 9999999999987542110 000 011234567889999999999998888
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+ ||=||||||.|-++|+.+|++|+|||||+-|-+....++++.|+++++ .+.+||.++|-..|+.+.||++-|
T Consensus 140 d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTV 212 (501)
T COG3845 140 D-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTV 212 (501)
T ss_pred c-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEE
Confidence 6 999999999999999999999999999999999999999999999976 345566689999999999999999
Q ss_pred EcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHHchhhhhhhhc
Q 047682 367 ISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDG 446 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (1425)
|..|+++-.-++ . . ..+.+++++
T Consensus 213 LR~Gkvvgt~~~--~--------------~---------------------------~~t~~ela~-------------- 235 (501)
T COG3845 213 LRRGKVVGTVDP--V--------------A---------------------------ETTEEELAE-------------- 235 (501)
T ss_pred EeCCeEEeeecC--C--------------C---------------------------CCCHHHHHH--------------
Confidence 999998632210 0 0 000000000
Q ss_pred cCCCCCCCCCCCCccccCCccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccch
Q 047682 447 LRTPFDKSKSHPAALTTKSYGINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIY 526 (1425)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~li~~~~f~~~~~~~~~~~~~~~~ 526 (1425)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhcchhhHhhhcCCCcCchhHHHHHHHHHhhHHHHHHHHHHHhhhhccCcCCCHHHHH
Q 047682 527 VGALFFTIIMITFNGMAELSMSIAKLPVFYKQRDLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDPNVGRAF 606 (1425)
Q Consensus 527 ~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~~P~~~~~~~i~~~i~Y~~~gl~~~~~~ff 606 (1425)
.|+|
T Consensus 236 -------------------------------------------------------------------lMvG--------- 239 (501)
T COG3845 236 -------------------------------------------------------------------LMVG--------- 239 (501)
T ss_pred -------------------------------------------------------------------HhcC---------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHhHcHHHHHHHHHHHHhhc
Q 047682 607 KQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSPLMYAQNGLAVNEFL 686 (1425)
Q Consensus 607 ~~~l~l~l~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 686 (1425)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCchhHHHhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecccccccccccCC
Q 047682 687 GNSWQKVLPNSTEPLGVEVLKSRGFFTDAYWYWLGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTG 766 (1425)
Q Consensus 687 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1425)
.. +
T Consensus 240 -~~---v------------------------------------------------------------------------- 242 (501)
T COG3845 240 -RE---V------------------------------------------------------------------------- 242 (501)
T ss_pred -Cc---c-------------------------------------------------------------------------
Confidence 00 0
Q ss_pred CccccccCCCCCCCCcccccchhhhhcccccccccccchhhhcccCCCCCCccccccCceEEEecceeeeecchhhhhcc
Q 047682 767 GTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQG 846 (1425)
Q Consensus 767 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 846 (1425)
. ... .. .+...+ +..++.+|++...+
T Consensus 243 -------------~--------~~~--------------~~----~~~~pg------~~vL~V~~L~v~~~--------- 268 (501)
T COG3845 243 -------------V--------LRV--------------VK----PPSTPG------EVVLEVEDLSVKDR--------- 268 (501)
T ss_pred -------------c--------ccc--------------cc----CCCCCC------CeEEEEeeeEeecC---------
Confidence 0 000 00 000000 12477777765432
Q ss_pred ccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC----Cc-ccccceEEEeecCC
Q 047682 847 VLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK----KQ-ETFARISGYCEQND 921 (1425)
Q Consensus 847 ~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~~ 921 (1425)
.....+++|||++++||++||.|..|-|-+.|+.+|+|..+. ..|+|.++|.+. +. ...++.++|||+|.
T Consensus 269 ---~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR 343 (501)
T COG3845 269 ---RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDR 343 (501)
T ss_pred ---CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhh
Confidence 124679999999999999999999999999999999997642 359999999985 22 22345689999986
Q ss_pred ---CCCCCCCHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh
Q 047682 922 ---IHSPNVTVYESLLYSAWLRL----PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 994 (1425)
Q Consensus 922 ---~~~~~lTv~E~l~~~~~lr~----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~ 994 (1425)
.+.+.+|+.||+.+...-+- ..-.+....+++..++++.++....... ...+.||||++||+-+||+|.
T Consensus 344 ~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~ 419 (501)
T COG3845 344 HGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELA 419 (501)
T ss_pred ccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhc
Confidence 34689999999987643211 1124556777888999999988632211 125689999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
++|++|+..+||.|||..+.+.|.+.|.+.++.|+.|++++-+.. |+++++|||.+|.+ |+++...++.
T Consensus 420 ~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred cCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 999999999999999999999999999999999999999999997 79999999999996 6777776664
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=371.58 Aligned_cols=214 Identities=26% Similarity=0.366 Sum_probs=189.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++.++ +...+|+|||++|++||+++|+|||||||||||+||.+... +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778887766 35689999999999999999999999999999999999866 45899999996542
Q ss_pred ----cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 ----QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
-...|+.+|+|+|+..+||++||.||+..+-..- ...++++.++...++|+.+||.+.+|.. +..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346788999999999999999999999864322 3566777888889999999999999886 4579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|||||+|||||+.+|+++++|||||.|||+...++.+.+++++++|.|.||+||.... .-+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999875 6788999999986 7889998
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 76
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=406.95 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=156.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+.++|+++.++ ++..++++++|-|.+++.+|++||||+|||||||++.|...+ ..|.+.-.-+.
T Consensus 389 vi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 578899988774 122689999999999999999999999999999999997653 46766543221
Q ss_pred CcccccceEEEeecC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQETFARISGYCEQN--DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~--~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.+++..|+ +.+.-+.++-|+++=. ...+.+.+.+..++..+||....+.. ..+.||+||
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gq 514 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQ 514 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCcccccc----chhhccccc
Confidence 22344443 2333456777776421 11133445678899999998544332 256899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|+||..|+.++..|.||+|||||+|||..+...+.++|.+. ..+||.++||-.. |-+.++++.+..+|+...+.|.
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999999999876 5689999999874 7888999999999999999886
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 591 i 591 (614)
T KOG0927|consen 591 I 591 (614)
T ss_pred H
Confidence 4
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=369.42 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=189.6
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC----CccceEEEEccCCC
Q 047682 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF----VPQRTAAYISQHDV 205 (1425)
Q Consensus 130 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~d~ 205 (1425)
..++.++|+|||++|++||+++|+|||||||||||++|.|+.+++ +|+|.++|.++... ..|+.+|+|+|+..
T Consensus 11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 345678999999999999999999999999999999999999999 99999999766421 24688999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+||.+||-||+..+...- . ..+.++++......|+.+||.+.+|..
T Consensus 88 LFPHlTvleNv~lap~~v---------~------------------------~~~k~eA~~~A~~lL~~VGL~~ka~~y- 133 (240)
T COG1126 88 LFPHLTVLENVTLAPVKV---------K------------------------KLSKAEAREKALELLEKVGLADKADAY- 133 (240)
T ss_pred ccccchHHHHHHhhhHHH---------c------------------------CCCHHHHHHHHHHHHHHcCchhhhhhC-
Confidence 999999999999874321 0 011223455667899999999988754
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+.+|||||||||+|||||+.+|+++++|||||+|||+...++.+.++++++. +.|.+.++|......+.+|||+
T Consensus 134 ----P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~Vadrvi 207 (240)
T COG1126 134 ----PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVI 207 (240)
T ss_pred ----ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEE
Confidence 4569999999999999999999999999999999999999999999999873 4556668999999999999999
Q ss_pred EEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHh
Q 047682 366 LISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQE 404 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~ 404 (1425)
+|++|+++.+|+++++ |..|.+....+|+..
T Consensus 208 Fmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 208 FMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred EeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999999999887 345665556666654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=392.74 Aligned_cols=223 Identities=30% Similarity=0.437 Sum_probs=193.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
+.++|++..++ .++.+|+||||+|++|+++||+||||||||||||+|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCc
Confidence 56677776552 146899999999999999999999999999999999998763 5899999998765
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 907 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.++|.+.++.. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 4567789999999999999999999999999986543 44566799999999999855544 467999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+||+||+++|++|||||||+|||+.++..+++.|++++++| +||++|||+++ ++...||+|++|++ |++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999997 68888999999996 78999997
Q ss_pred CCCCchhHHHHHhh
Q 047682 1064 LGRHSSHLISYFEA 1077 (1425)
Q Consensus 1064 ~~~~~~~~~~yf~~ 1077 (1425)
. .++...+..
T Consensus 221 ~----~~l~~~~~~ 230 (293)
T COG1131 221 P----EELKEKFGG 230 (293)
T ss_pred H----HHHHHhhcc
Confidence 6 345555443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=372.03 Aligned_cols=224 Identities=26% Similarity=0.363 Sum_probs=194.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDV 205 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 205 (1425)
+..++|+|||++|++|++.+|+|+||||||||++++.++..|+ +|+|.++|+++..+.. |+.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999999 9999999988876542 478999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
++...||.||++|..+..+.+ ..+.+.++.++|+.+||++.+|..
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccC-
Confidence 999999999999988765521 124466788999999999887754
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+.+|||||||||+|||||+.+|+||++|||||+|||.|+..|++.|+++.++.| .+|+.++|-++-+-+.||||.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg-lTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG-LTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHhhhhe
Confidence 557999999999999999999999999999999999999999999999988765 555558899999999999999
Q ss_pred EEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhhc
Q 047682 366 LISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVT 406 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v~ 406 (1425)
+|++|+++++|+..++ |..|.+.-..+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999988 34565555555665544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=360.54 Aligned_cols=211 Identities=27% Similarity=0.409 Sum_probs=188.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIG 208 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 208 (1425)
.++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.+. |+.+|||-|+--+||
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFP 88 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCC
Confidence 4567999999999999999999999999999999999999999 9999999999987654 689999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
++||.|||.+--.+++.. .++.+.+++++|+.+||+.. ...++
T Consensus 89 h~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~---~~~~R 131 (309)
T COG1125 89 HLTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS---EYADR 131 (309)
T ss_pred CccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH---HHhhc
Confidence 999999999876665432 12345678999999999752 12357
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
+++.|||||+|||.+||||+.+|++++||||+++||+-++.++.+.++++.++.++|+|+ ++|+.+|.+.++|||++|+
T Consensus 132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf-VTHDidEA~kLadri~vm~ 210 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF-VTHDIDEALKLADRIAVMD 210 (309)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEE-EecCHHHHHhhhceEEEec
Confidence 778899999999999999999999999999999999999999999999998877665554 7999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|+++..|++++++.
T Consensus 211 ~G~i~Q~~~P~~il~ 225 (309)
T COG1125 211 AGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEEEeCCHHHHHh
Confidence 999999999999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=358.64 Aligned_cols=230 Identities=27% Similarity=0.384 Sum_probs=199.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+++++++.++ +.+.+++|||++|++||+++||||||+||||||++|.|..++ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 58888888765 456899999999999999999999999999999999998763 589999999885
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCc
Q 047682 906 KQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSG 978 (1425)
Q Consensus 906 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~ 978 (1425)
.+ ...++++|+++|+-.+|.++||+||+.|.. |...+.+++..++.+..-++++||... .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 135678999999999999999999999864 344567778888888888999999876 5544 578
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||+|||++|||||+.||+|||+||||+||||.++..+-++|+++.++ |.|++++|||.. +++..+||+++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877 999999999997 69999999999997 68
Q ss_pred EEEECCCCC----CchhHHHHHhhCC
Q 047682 1058 EIYVGPLGR----HSSHLISYFEAIP 1079 (1425)
Q Consensus 1058 ~~y~G~~~~----~~~~~~~yf~~~~ 1079 (1425)
+++.|++.+ ....+.+||....
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 999999753 2235677887654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=371.77 Aligned_cols=219 Identities=23% Similarity=0.328 Sum_probs=191.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
+++++++..+... ......+|+|||++|++||++||+|+||||||||++++.+... +.+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5677777555310 1124579999999999999999999999999999999999766 45899999997643
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. +..|+.+|+++|+..++...||+||+.|...+. ..++++++++|.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 346788999999999999999999999987765 367888999999999999999888876 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
|||||||+|||||+.+|+||++|||||.|||.+.+.|.+.|+++.++ |.|||++||+++ -+-+.||||.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999866 999999999986 37789999999996 7999
Q ss_pred EECCCC
Q 047682 1060 YVGPLG 1065 (1425)
Q Consensus 1060 y~G~~~ 1065 (1425)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999863
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=367.13 Aligned_cols=225 Identities=29% Similarity=0.470 Sum_probs=191.8
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCc---cCCCCCc-cceEEEEccCCCC
Q 047682 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH---NMDEFVP-QRTAAYISQHDVH 206 (1425)
Q Consensus 131 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~d~~ 206 (1425)
.....+++|||+.|+.||+++|+|||||||||||++|+|+..|+ +|.|.+||. +.+.... .|+||||+|+-.+
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YAL 88 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYAL 88 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhh
Confidence 34567899999999999999999999999999999999999999 999999999 5555333 3889999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
|+.|||.|||+|+.+++.. .|+ ..+.+.+++++|+.+.|++.++
T Consensus 89 F~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~---- 132 (345)
T COG1118 89 FPHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLAD---- 132 (345)
T ss_pred cccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhh----
Confidence 9999999999999876521 111 1233556888999999987765
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+++.+|||||||||++||||+..|++|+||||+++||...+.++.++|+++.+..+.|++. ++|+..|++++||+|++
T Consensus 133 -ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvv 210 (345)
T COG1118 133 -RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVV 210 (345)
T ss_pred -cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEE
Confidence 5667899999999999999999999999999999999999999999999998766666555 79999999999999999
Q ss_pred EcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHh
Q 047682 367 ISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQE 404 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~ 404 (1425)
|++|+|...||++++. ..|...-+..|+-+
T Consensus 211 l~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 211 LNQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred ecCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 9999999999999984 34555545555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=364.96 Aligned_cols=217 Identities=27% Similarity=0.428 Sum_probs=184.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++ ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 588999999884 22 59999999999999999999999999999999999665 3589999999886
Q ss_pred CcccccceEEEeecCCCC--CCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQETFARISGYCEQNDIH--SPNVTVYESLLYSAWLRLP--PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~--~~~lTv~E~l~~~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
++..-+..+|||||...+ ..-+||+|-+..+..-+.+ ....+ ..++.++++|+.+|+.+++|..+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654445689999995422 2347999999876433221 11222 336779999999999999999876 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||+||+.|||||+++|++|+|||||+|+|+.++..++++|+++.++|+||++++||++ .+.+.||+|+.|++ ++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln~--~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLNR--HLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEcC--eeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 58999999999974 78999
Q ss_pred CCCCC
Q 047682 1062 GPLGR 1066 (1425)
Q Consensus 1062 G~~~~ 1066 (1425)
||+.+
T Consensus 220 G~~~~ 224 (254)
T COG1121 220 GPPEE 224 (254)
T ss_pred cChhh
Confidence 99864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=384.31 Aligned_cols=217 Identities=30% Similarity=0.455 Sum_probs=194.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc-ceEEEEccCCCCCCCCCHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ-RTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+|+|+|++|++||.++|+|||||||||||++|||+.+|+ +|+|.++|.++++..+. |.+|+|+|+..++|.|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999 99999999999998775 88999999999999999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.|+.+.++.. .++.+.+++++.+.|+|++..|++. ++||
T Consensus 95 Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r~P-----~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNRKP-----LQLS 135 (338)
T ss_pred HhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 999998876531 1234667889999999999988654 5699
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
|||||||++||||+.+|++++||||+|.||...+.++...++++.+..+ +++|.++|+..|+..++|||++|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~-~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG-TTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC-CcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999999876654 555558999999999999999999999999
Q ss_pred ecChhHHHHHHHhCCCCCCCCCCHHHHHH
Q 047682 375 QGPREHVLEFFKSMGFECPKRKGVADFLQ 403 (1425)
Q Consensus 375 ~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ 403 (1425)
.|++.++. ..|.+.-+|.|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999994 4577766777654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=368.53 Aligned_cols=210 Identities=31% Similarity=0.455 Sum_probs=181.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc---ceEEEEccCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGE 209 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 209 (1425)
++++|+|+|+++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+...+ +.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 356999999999999999999999999999999999999998 99999999999877653 789999999888899
Q ss_pred CCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 210 MTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 210 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
+||+|-+.++..- ++. + . ...++....++..|+.+|+.+.+++.+.
T Consensus 91 ~tV~d~V~~GR~p~~~~---~----------------~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~-- 137 (258)
T COG1120 91 LTVYELVLLGRYPHLGL---F----------------G------------RPSKEDEEIVEEALELLGLEHLADRPVD-- 137 (258)
T ss_pred cEEeehHhhcCCccccc---c----------------c------------CCCHhHHHHHHHHHHHhCcHHHhcCccc--
Confidence 9999999987431 110 0 0 0011123357889999999999987765
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||.|||||+++|++|+||||||+||...+.++++.+++++++.+.|+| .+.|+......+||++++|+
T Consensus 138 ---~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv-~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 138 ---ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVV-MVLHDLNLAARYADHLILLK 213 (258)
T ss_pred ---ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEE-EEecCHHHHHHhCCEEEEEE
Confidence 49999999999999999999999999999999999999999999999876555554 47889999999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|+++.+|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998875
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=368.20 Aligned_cols=218 Identities=28% Similarity=0.400 Sum_probs=187.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++.+|+++.|+ ++.+|+|+|+++++|++++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367889988873 4689999999999999999999999999999999999765 3479999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. +.+++.++|+||.......+||+|.+.++..-.... ....++.++.++++|+.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 467789999999998888999999998764321111 1122333457899999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||+.|||||+++|+||+||||||+||...+.++++.++++++ +|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999984 49999999999984 7889999999996 68899
Q ss_pred ECCCC
Q 047682 1061 VGPLG 1065 (1425)
Q Consensus 1061 ~G~~~ 1065 (1425)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=358.91 Aligned_cols=204 Identities=26% Similarity=0.364 Sum_probs=180.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+.++++++.+. ...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 367788877763 2579999999999999999999999999999999999876 3589999999886
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.. ....+|||+|++.++|-+||+||+.++...+. .++++++++++++++.+||.+..|.. +.+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999876653 45666777899999999999999886 5689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||+|||||+.+|+||+||||++.||+.|+..+++.|.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999998764 5899999999997 677889999999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=405.59 Aligned_cols=216 Identities=23% Similarity=0.356 Sum_probs=186.7
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|++..++. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 36889999887631 23579999999999999999999999999999999999865 358999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 905 KKQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 905 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. ...++.++.++++++.+||.+..+..+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999876652 233444567899999999998887764 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|+++. +|+|||++||+++ ++..++||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999986 57788999999997 6888998
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 75
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=358.34 Aligned_cols=193 Identities=29% Similarity=0.446 Sum_probs=167.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc------ccc-cceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ------ETF-ARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~gyv~Q~~~~~ 924 (1425)
..+|++||++|++||++||||||||||||||++|.|...+ .+|.+.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999997654 58999999976532 123 45699999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccc-cccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLD 1003 (1425)
|++||+||+.....+.. .....+++.++++++.+||.+..+ .. +..|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 99999999998765542 222255667899999999986665 43 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
|||..||+.++..|++.+++++++ |+|||++|||| ++...+||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999866 89999999998 5788999999999865
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=384.72 Aligned_cols=224 Identities=29% Similarity=0.445 Sum_probs=198.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 210 (1425)
+...+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+-.+||.|
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 3567999999999999999999999999999999999999999 9999999999998876 48899999999999999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.|+.+.++... ..+.+.+++++++.++|++.++.. +
T Consensus 93 tV~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~R~-----p 134 (352)
T COG3842 93 TVEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFADRK-----P 134 (352)
T ss_pred cHHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhhhC-----h
Confidence 99999999987432110 123456788999999999877654 4
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.+|||||||||+|||||+.+|++|+||||.|+||..-+.++..-|+++.+..| .+.|.++|+..|...++|||++|++|
T Consensus 135 ~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g-iT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 135 HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELG-ITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHhhhccceEEccCC
Confidence 56999999999999999999999999999999999999999999999988775 45555899999999999999999999
Q ss_pred eEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhh
Q 047682 371 QIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405 (1425)
Q Consensus 371 ~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v 405 (1425)
+|...|+++++ |..|...-+|+|+-+.
T Consensus 214 ~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 214 RIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred ceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 99999999999 4568788888888754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=401.49 Aligned_cols=231 Identities=23% Similarity=0.439 Sum_probs=194.0
Q ss_pred CCCCC---ceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCC
Q 047682 80 GISLP---EIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPP 156 (1425)
Q Consensus 80 ~~~~p---~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~ 156 (1425)
|...| +..|+|+|+++.+.. +++.+||+|+|++|+|||.|||+|||
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~-------------------------------Rp~~~Vlk~lsfti~pGe~vALVGPS 503 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPT-------------------------------RPDVPVLKNLSFTIRPGEVVALVGPS 503 (716)
T ss_pred CccccccccceEEEEEeeeecCC-------------------------------CCCchhhcCceeeeCCCCEEEEECCC
Confidence 55444 468999999998732 13457999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhh
Q 047682 157 ASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLV 233 (1425)
Q Consensus 157 GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 233 (1425)
||||||+.++|..+++|+ +|+|.+||+|+.++++ ++.||+|.|+|.+|. -||+|||.|+..
T Consensus 504 GsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~------------ 567 (716)
T KOG0058|consen 504 GSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD------------ 567 (716)
T ss_pred CCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC------------
Confidence 999999999999999999 9999999999998875 588999999998875 599999999853
Q ss_pred HhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcE
Q 047682 234 ELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA 313 (1425)
Q Consensus 234 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~i 313 (1425)
..+.|+++.++.... ..+++ .++++.+||.||+++.. ||||||||++|||||+++|+|
T Consensus 568 -------------~~t~e~i~~AAk~AN-----ah~FI---~~~p~gY~T~VGEkG~q-LSGGQKQRIAIARALlr~P~V 625 (716)
T KOG0058|consen 568 -------------NATDEEIEAAAKMAN-----AHEFI---TNFPDGYNTVVGEKGSQ-LSGGQKQRIAIARALLRNPRV 625 (716)
T ss_pred -------------CCCHHHHHHHHHHhC-----hHHHH---HhCccccccccCCcccc-ccchHHHHHHHHHHHhcCCCE
Confidence 223344444443222 23444 46999999999998875 999999999999999999999
Q ss_pred eEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 314 LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 314 llLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
|||||.||+||+++...+.++|.+..+ ++|+++ |. |+-++.+.+|+|+++++|++++.|+++|+++
T Consensus 626 LILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IA-HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 626 LILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IA-HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Ee-hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999988755 456655 44 4557889999999999999999999999975
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=382.28 Aligned_cols=212 Identities=32% Similarity=0.471 Sum_probs=185.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC--CccceEEEEccCCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF--VPQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 210 (1425)
.+.+|+||||+|++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 468999999999999999999999999999999999999998 99999999887653 3457899999999999999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+|||.|.+++.+... .....+++++++.+||++..++. +
T Consensus 94 T~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-----~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKANKK-----V 134 (293)
T ss_pred cHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhhCcc-----h
Confidence 99999999998875321 01234578899999999854444 4
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
++||+||||||+||.||+++|+++||||||+|||+.++.++++.|+++++. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 569999999999999999999999999999999999999999999999874 3355666788899999999999999999
Q ss_pred eEEEecChhHHHHHHHh
Q 047682 371 QIVFQGPREHVLEFFKS 387 (1425)
Q Consensus 371 ~iv~~G~~~~~~~~F~~ 387 (1425)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=353.43 Aligned_cols=213 Identities=26% Similarity=0.361 Sum_probs=189.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++|+|++..+. ++.+++|+|++|++||+++++|||||||||+|++|.+... +.+|+|.+||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 56788876652 4579999999999999999999999999999999999876 45899999999865
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc--ccccccCCCCCCcCCH
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP--LRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~lSg 981 (1425)
. ...||.+|||-|.-.+||++||.||+.+--.+. .+++++.+++++|+|+++||.+ ++++. +.+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 357889999999999999999999998765543 6788889999999999999975 66665 578999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||+|||.+||||+++|+||+||||++.|||-++..+++.++++.++ |+|||++|||.. |.+.+.|||.+|++ |+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 999999999987 78999999999995 67788
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
+|++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 7775
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=349.08 Aligned_cols=211 Identities=24% Similarity=0.374 Sum_probs=181.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDV 205 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 205 (1425)
+.+.|++|||+.|++||+++|+||||||||||||.|.|+++|+ +|+|.++|+++..... ++++|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4567999999999999999999999999999999999999999 9999999999866542 477999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+|..+||+||+.|..+-.. ++.+ ...+..+..-|+..||... +
T Consensus 96 LFssltV~eNVafplre~~---------~lp~------------------------~~i~~lv~~KL~~VGL~~~----~ 138 (263)
T COG1127 96 LFSSLTVFENVAFPLREHT---------KLPE------------------------SLIRELVLMKLELVGLRGA----A 138 (263)
T ss_pred cccccchhHhhheehHhhc---------cCCH------------------------HHHHHHHHHHHHhcCCChh----h
Confidence 9999999999999754321 1111 1223344556788899754 3
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
.+.++..||||++||+++|||++.+|+++|+||||+|||+.++..+.+.++++.+..+.|+++ ++|+.++++..+|+|+
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~-VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE-EECChHHHHhhhceEE
Confidence 456777899999999999999999999999999999999999999999999998887666555 7999999999999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 047682 366 LISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~ 383 (1425)
+|.+|+|+.+|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=350.27 Aligned_cols=222 Identities=26% Similarity=0.327 Sum_probs=187.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..++ +++++|+|||+.|++||++||+|||||||||||++|.|... +.+|+|.+||..+
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478888887663 45689999999999999999999999999999999999655 4589999999764
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCccccccccCCC
Q 047682 906 KQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-----PDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974 (1425)
Q Consensus 906 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 974 (1425)
.. +.+++.+||++|+..+.+.++|.||+..+..-+.+ -....++.+...-++|+.+|+.+.+-.+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 34678899999999999999999999876422211 12333444556678899999998887774
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
..|||||+|||+|||+|+.+|+|++.|||+++|||.+++.||+.|++++++ |.|||++.||... ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 469999999999999999999999999999999999999999999999854 8999999999864 678999999999
Q ss_pred CCcEEEEECCCCCCc
Q 047682 1054 RGGYEIYVGPLGRHS 1068 (1425)
Q Consensus 1054 ~Gg~~~y~G~~~~~~ 1068 (1425)
+ |+++|.||..+..
T Consensus 223 ~-G~ivfDg~~~el~ 236 (258)
T COG3638 223 A-GRIVFDGPASELT 236 (258)
T ss_pred C-CcEEEeCChhhhh
Confidence 6 7999999986533
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=355.91 Aligned_cols=194 Identities=28% Similarity=0.415 Sum_probs=171.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.++|+|+|++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+++ .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999999 999999999883 3567899999999999999999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.|+.+..+... .+...+++..|+.+||.+..| +++++|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 99999987654211 112336788999999998876 455679
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC--Ce
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE--GQ 371 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~ 371 (1425)
||||||||+|||||+.+|++|+||||+++||..|+.++.+.|.++.+..+.| ++.++|+.+|...++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~T-vllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKT-VLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCE-EEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999998876555 55589999999999999999998 55
Q ss_pred E
Q 047682 372 I 372 (1425)
Q Consensus 372 i 372 (1425)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=342.67 Aligned_cols=202 Identities=27% Similarity=0.377 Sum_probs=184.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ--ETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
.++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|++||.+... ...++.+|.++.+-.++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 3589999999999999999999999999999999998763 58999999998543 4567889999988889999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
+|||.|.+.+. +....+.+++.+++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999876 56677778889999999999999999976 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|..+...+.+.++++.+.|++||++||..+ |+.++||+|++|++ |++++.|...
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999988999999999986 78889999999997 6899999863
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=361.74 Aligned_cols=205 Identities=30% Similarity=0.451 Sum_probs=184.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc---cCCc-ccccceEEEeecCCCCCCC
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY---PKKQ-ETFARISGYCEQNDIHSPN 926 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~~ 926 (1425)
...+++|||++|+.||++||+|||||||||||++|+|..++ ..|.|.+||. +..+ ....|.+|||+|+..+|+.
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 45689999999999999999999999999999999998764 5899999998 5443 3446789999999999999
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 047682 927 VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006 (1425)
Q Consensus 927 lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPT 1006 (1425)
+||.||+.|+.+++ ....++.+.+.+++++|+.+.|+++.+.. +..|||||||||++||||+.+|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998877 34456677888999999999999999886 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1007 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1007 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
++||+.-+..+.+.|+++.+. |.|+|++|||+. ++++.+|||++|++ |++.-.||+.
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999866 999999999997 79999999999997 6788888874
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=340.44 Aligned_cols=208 Identities=29% Similarity=0.360 Sum_probs=184.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 209 (1425)
....+++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..+.. .++.+|.++.+..++..
T Consensus 13 ~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~R 89 (245)
T COG4555 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYAR 89 (245)
T ss_pred CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhh
Confidence 3445999999999999999999999999999999999999999 999999999875443 36889999988899999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
||++|||.|.+++.+.. +.+.+.+++++.+.|+|.+|.|+.+|+
T Consensus 90 lT~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~-- 133 (245)
T COG4555 90 LTARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE-- 133 (245)
T ss_pred hhHHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh--
Confidence 99999999998876432 123456788999999999999999985
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+|-|+||||+|||||+++|++++|||||||||..+...+.+.++++.. . +.+++..+|..+|+..+||+|++|++
T Consensus 134 ---~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-e-gr~viFSSH~m~EvealCDrvivlh~ 208 (245)
T COG4555 134 ---FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-E-GRAVIFSSHIMQEVEALCDRVIVLHK 208 (245)
T ss_pred ---hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-C-CcEEEEecccHHHHHHhhheEEEEec
Confidence 999999999999999999999999999999999999999999998743 3 45555578999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 047682 370 GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 G~iv~~G~~~~~~~ 383 (1425)
|++++.|+.+++.+
T Consensus 209 Gevv~~gs~~~l~~ 222 (245)
T COG4555 209 GEVVLEGSIEALDA 222 (245)
T ss_pred CcEEEcCCHHHHHH
Confidence 99999999988764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=357.10 Aligned_cols=208 Identities=25% Similarity=0.417 Sum_probs=176.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCC--CCCCCCCH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHD--VHIGEMTV 212 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 212 (1425)
++|+|||+.+++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+......+.+||||||.. .+-...||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 4999999999999999999999999999999999999998 999999999887776678999999953 33445799
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+|.+..+..-+. .+++ .. ..+....++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~--g~~~---~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK--GWFR---RL-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc--cccc---cc-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999998732111 0110 00 111245688999999999999988886
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|.+.|+++.++ | .+|+.++|+...+.++||+|+.|+ +++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g-~tIl~vtHDL~~v~~~~D~vi~Ln-~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G-KTVLMVTHDLGLVMAYFDRVICLN-RHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCcHHhHhhCCEEEEEc-Cee
Confidence 9999999999999999999999999999999999999999999999875 4 455558999999999999999995 568
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
++.|+++++..
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999988753
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=331.11 Aligned_cols=212 Identities=26% Similarity=0.346 Sum_probs=183.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++|++|+..|. ..+++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 57888876664 23579999999999999999999999999999999999655 35899999999854
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. .-.+|.+|+|+||..+.++.||+||+.|..... .....+.+++|.++|+.+||.+.++.. +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 2 135789999999999999999999999987665 455677788899999999999988776 46799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||+||++||||++.+|++|+.||||-+||+..+..||+++.++.+.|.||++.||+.+. +..+--|++.|++ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999999999999999642 4445578999997 56655
Q ss_pred EC
Q 047682 1061 VG 1062 (1425)
Q Consensus 1061 ~G 1062 (1425)
..
T Consensus 218 d~ 219 (223)
T COG2884 218 DE 219 (223)
T ss_pred cc
Confidence 43
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=371.59 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=192.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..+. +. .+|+|+|++|+.||+++|+|||||||||||++|||... +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg------------~~-~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG------------SF-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC------------Cc-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888887663 21 29999999999999999999999999999999999876 4589999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
+. ...+|.+++|+|+..++|++||+||+.|+.+++ ..++++.+++|+++.+.|+|.++.|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 65 345688999999999999999999999998776 456778889999999999999999987 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+++|++++||||.|.||+..+..+...|+++.++ |.|+|.+|||.. |.+.++||+.+|++ |++.-.|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~-G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMND-GRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeC-CeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999985 89999999999995 78888887
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 218 p~ 219 (338)
T COG3839 218 PL 219 (338)
T ss_pred hH
Confidence 63
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=335.78 Aligned_cols=217 Identities=24% Similarity=0.315 Sum_probs=187.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC---CCceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~---~~~~~~G~i~i~g 902 (1425)
.++.+|++..|. .+.+|+|||+.|++++++|++|||||||||||+++.+.. ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 578889888773 457999999999999999999999999999999999843 3346899999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGV 976 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~ 976 (1425)
.++.. ...||.+|.|+|.+.-|| +|++||+.|+.++....+ ++.++.|++.|+...|++- +|.+-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 87543 256889999999999999 999999999987764332 6678889999999999864 4444222 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.+|||||+|||||||+|+.+|+||+||||||+|||.+...|.+++.++. +.-|||++||.+. ......|+...+.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 5799999999999999999999999999999999999999999999997 4799999999996 57788999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++.+|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999997
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=335.31 Aligned_cols=223 Identities=25% Similarity=0.401 Sum_probs=182.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCccCCCCC-----ccceEEEEccCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHNMDEFV-----PQRTAAYISQHDV 205 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 205 (1425)
++.+|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.++|+++.+.. .|+++|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 4569999999999999999999999999999999998754 45678999999999986542 3689999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV-CADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~ 284 (1425)
-|| +|++||+.|+.+..|... + +.+..++..|+.-+|-+ ..|..
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~--------------------------------~ldeiVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--K--------------------------------ELDEIVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--H--------------------------------HHHHHHHHHHHHhHhHHHhHHHh
Confidence 998 999999999999877532 1 11223444444444432 22322
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
++...+|||||+||++|||||+-+|+||+||||||+||+-++..|-+.+.++.+ .-+|+.++|......+..|++
T Consensus 144 --~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 144 --HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred --hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhh
Confidence 123346999999999999999999999999999999999999999999999854 445555899999999999999
Q ss_pred EEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHH
Q 047682 365 ILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQ 403 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ 403 (1425)
.++..|++++.|+.+++ |..|.++...||+.
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 99999999999999988 45677766666653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=341.01 Aligned_cols=217 Identities=26% Similarity=0.374 Sum_probs=182.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDV 205 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 205 (1425)
..+++|+|||++|++||+++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 4567999999999999999999999999999999999999998 9999999988765542 478999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+.+.+||.+|+..+...+. +.++....+ -..+.+..+-..|+.+|+.+.+.++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~slfgl------------------------fsk~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRSLFGL------------------------FSKEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHHHhCC------------------------CCHHHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998753221 111111111 11122334456789999999888877
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
++ |||||+|||+|||||+.+|++++-|||+++||+.++.++++.|+++++..|.|+|+. +|..+-+.++||||+
T Consensus 146 ~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 ST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRII 219 (258)
T ss_pred cc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhhe
Confidence 64 999999999999999999999999999999999999999999999998877777665 566778899999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 047682 366 LISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~ 383 (1425)
-|++|+|+|+||++++-+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=372.41 Aligned_cols=216 Identities=26% Similarity=0.379 Sum_probs=192.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..+. +..+|+|+|++|++||+++|+|||||||||||++|||... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888877663 4679999999999999999999999999999999999876 4589999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...+|.+|+|+|+..+||+|||+||+.|+.+++ ....+++.+++++++++.++|.+..+.. +.+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 65 345788999999999999999999999997743 3455667888999999999999998887 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+||||.|.||..-+..+..-|+++.++ |.|.|++|||.+ |.+.+.|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998754 999999999986 78899999999996 68888887
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 221 P~ 222 (352)
T COG3842 221 PE 222 (352)
T ss_pred HH
Confidence 63
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=369.96 Aligned_cols=214 Identities=28% Similarity=0.423 Sum_probs=186.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..++ ++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 588899987763 2469999999999999999999999999999999999765 3589999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++.+|||+|++.+++.+||+||+.|.+.++ ..+..+.++.++++++.++|.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 234678999999999999999999999876554 2333444566889999999998888764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999997 68889999999997 68899998
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 6
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=344.52 Aligned_cols=196 Identities=27% Similarity=0.416 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 206 (1425)
.++|+|+|++|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999998876542 3679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
+|++||+||+.......+.... ......+.+++.+||++..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~---- 136 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL---- 136 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----
Confidence 9999999999987665543110 12335677899999986655
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+..+..|||||||||+|||||+.+|++++.||||..||+.++..|++.++++++..+.|+|+ ++|+ +++...|||++.
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~-VTHd-~~lA~~~dr~i~ 214 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM-VTHD-PELAKYADRVIE 214 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE-EcCC-HHHHHhCCEEEE
Confidence 12344699999999999999999999999999999999999999999999998765555555 4554 478889999999
Q ss_pred EcCCeE
Q 047682 367 ISEGQI 372 (1425)
Q Consensus 367 L~~G~i 372 (1425)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=401.06 Aligned_cols=258 Identities=26% Similarity=0.408 Sum_probs=208.4
Q ss_pred hHHhHHHHHHhhhhcccCHHHHHHHHHHHHhhcCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhcc
Q 047682 47 LLERQRLIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHI 126 (1425)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1425)
.++-+.-.+|+..+.+.++|.-..+. ....+....+++|+|+++.+...
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~~-------------------------- 484 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGPD-------------------------- 484 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCCC--------------------------
Confidence 35667777888888887777322111 11122234689999999987431
Q ss_pred ccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccC
Q 047682 127 LPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQH 203 (1425)
Q Consensus 127 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 203 (1425)
+..+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|. +|+|.+||+++++.++ |+.++||+|+
T Consensus 485 ------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 485 ------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred ------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 125899999999999999999999999999999999999998 9999999999988765 5899999996
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
+. +++.||+||+.++. |+.+.|+++.|+...+.. +. ...++..+||
T Consensus 556 ~~-Lf~gSI~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~~-----~f---I~~lP~gy~t 601 (709)
T COG2274 556 PF-LFSGSIRENIALGN-------------------------PEATDEEIIEAAQLAGAH-----EF---IENLPMGYDT 601 (709)
T ss_pred ch-hhcCcHHHHHhcCC-------------------------CCCCHHHHHHHHHHhCcH-----HH---HHhccccccc
Confidence 55 55679999999863 444555566665444322 22 2468999999
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.||+.+. +||||||||++|||||+++|+||+||||||+||+.++..|.+.|.++.+ ++|+|++.| +..+.+.||+
T Consensus 602 ~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaH--Rl~ti~~adr 676 (709)
T COG2274 602 PVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAH--RLSTIRSADR 676 (709)
T ss_pred ccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEc--cchHhhhccE
Confidence 9997665 6999999999999999999999999999999999999999999999854 577777443 3468899999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|+|+.+|+++++++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=367.93 Aligned_cols=206 Identities=24% Similarity=0.340 Sum_probs=178.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 207 (1425)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999999876532 46799999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.|+.+..+.. ..+...++.++++.+||++..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------------------------------KDEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCCh--
Confidence 9999999999875432210 0112335678899999988777554
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.+..+.| |+.++|+.+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~t-iiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999997755555 555788899999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=369.97 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=179.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999998 9999999998876543 4789999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+.++.. ..+...+++++++.+||++..|+.+ +.
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~L~~~~~~~~-----~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------------------------------RAEVAERVAELLDLVGLPGSERKYP-----GQ 134 (353)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhCCh-----hh
Confidence 99999986532210 0112345788999999998877554 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+..+.| ++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~t-vi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT-TIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654544 55578899999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=367.22 Aligned_cols=217 Identities=23% Similarity=0.299 Sum_probs=185.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. .....+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5788888776311 112469999999999999999999999999999999999866 35899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
.. ..++.+||++|+..+++..||+||+.|....+ ..+.++.++++.++++.+||.+..|.. +..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 23567999999999999999999999876533 234555667789999999999888776 45799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999865 999999999986 57789999999986 6889
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99986
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=369.33 Aligned_cols=207 Identities=21% Similarity=0.353 Sum_probs=180.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--cEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLS--GRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 210 (1425)
..+|+|+|++|++|++++|+|||||||||||++|+|+.+|+ + |+|.++|+++....+ ++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35999999999999999999999999999999999999998 8 999999998865543 46799999999999999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.|+.+..+.. ..+...+++++++.+||++..|+.+
T Consensus 95 tv~enl~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~~----- 135 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------------------------------KADIAERVADALKLVGLGDAAAHLP----- 135 (362)
T ss_pred cHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhcCCCchhhCCh-----
Confidence 9999999986543210 0112335778999999998877665
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999876542455666899999999999999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=371.36 Aligned_cols=206 Identities=26% Similarity=0.391 Sum_probs=179.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876543 4789999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. ..+...+++++++.+||++..+..+ +.
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------------------------------KAEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 99999986532210 0112335678999999988777655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|+|||||++||..++..+.+.|+++.+..+ ++++.++|+..++.+++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK-TTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999876544 4555578899999999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=369.74 Aligned_cols=206 Identities=24% Similarity=0.394 Sum_probs=179.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999876554 3789999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+.++.. ..+...+++++++.+||.+..+..+ +.
T Consensus 96 ~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gl~~~~~r~~-----~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVP----------------------------------KEERKQRVKEALELVDLAGFEDRYV-----DQ 136 (351)
T ss_pred HHHHHHHHhHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 99999986543211 0112345778999999987776554 56
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.| ++.++|+..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t-ii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNIT-SLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654544 55578999999999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=369.02 Aligned_cols=215 Identities=26% Similarity=0.375 Sum_probs=188.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478889887763 2468999999999999999999999999999999999865 3589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.++.++++++.++|.++.+.. +..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 224577999999999999999999999986543 244556677899999999999988876 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+||||||+||..++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999996 68899999999997 68899998
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 63
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=345.00 Aligned_cols=207 Identities=26% Similarity=0.403 Sum_probs=181.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC----CCCccceEEEEccC-CCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD----EFVPQRTAAYISQH-DVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~-d~~~~ 208 (1425)
..+|+|+|+.+++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.+.. ....++.+|||+|+ |..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 46999999999999999999999999999999999999998 999999999865 23346889999999 56788
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.-||.|.++|+.+..+... ++...+++.+++.+||.+.++..
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~---- 135 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDRP---- 135 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccCC----
Confidence 8899999999987765421 12456788999999999887654
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
+..|||||||||+||.+|+.+|++++|||||||||+..+.++++.++++.+. ++.++|.++|+...+.+++|++++|+
T Consensus 136 -p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 136 -PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred -ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999999764 34555558999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877754
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=351.22 Aligned_cols=213 Identities=25% Similarity=0.352 Sum_probs=179.7
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4677776652 2469999999999999999999999999999999999765 347999999987532
Q ss_pred ------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 908 ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 908 ------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
..+++.++|++|++.+++.+||+||+.+...... ..+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2345679999999999999999999988643221 2234444567889999999987776653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999864 899999999986 57788999999997 67888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 8875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=361.47 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999876432 2467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.|.++..+... .+...+++.+++.+||.+..++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998655432110 0112345778999999988887775
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
+|||||||||+||+||+++|++++|||||+|||+.++..+++.|+++.+ . +++|+.++|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999854 3 4556667899999999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+++++.+
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=368.88 Aligned_cols=215 Identities=26% Similarity=0.365 Sum_probs=186.7
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67888887662 12469999999999999999999999999999999999765 35899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|++.++|++||+||+.|....+ ..+..+.++.++++++.++|.+..+.. +..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHH
Confidence 3 223478999999999999999999999986543 234555667789999999999888876 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 899999999986 68899999999986 788999986
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 220 ~ 220 (356)
T PRK11650 220 V 220 (356)
T ss_pred H
Confidence 3
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=366.13 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=188.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478899887763 2468999999999999999999999999999999999876 3589999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
... ..+|.+|||+|+..++|++||+||+.|....+ ..+..+.+++++++++.++|.++.+.. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 432 23578999999999999999999999987544 244556677899999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999996 68899999999997 68889998
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 63
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=366.15 Aligned_cols=209 Identities=21% Similarity=0.328 Sum_probs=180.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHD 204 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 204 (1425)
+.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3456999999999999999999999999999999999999998 9999999999876543 46899999999
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.+++.+||+||+.|+.+..+... .+...++.++++.+||++..++.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~ 126 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRY 126 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCC
Confidence 99999999999999765432110 11233567789999998777665
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
++ .|||||||||+|||||+.+|+++||||||+|||+.++..+.+.++++.+..++| |+.++|+..++..++|+|
T Consensus 127 p~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~T-ii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 127 PD-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT-IVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEE
Confidence 54 599999999999999999999999999999999999999999999986544444 555789999999999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
++|++|+++..|+++++..
T Consensus 201 ~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEeCCEEEeeCCHHHHHh
Confidence 9999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=315.66 Aligned_cols=201 Identities=24% Similarity=0.396 Sum_probs=175.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHH
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
..++.|++||++||+||||||||||||+|+|+..|. +|+|.+||++.+...+ +|-++.++|+..+|..+||++|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467889999999999999999999999999999998 9999999999987665 578999999999999999999999
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
++.. ++-+ +.. +....++.++..+||..+.++..+ .|||||
T Consensus 94 LGl~---P~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---cccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8742 1111 111 123457788999999999876655 599999
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecC
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGP 377 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 377 (1425)
||||++||+|+++.+|++||||+|+||+.-+.++...+.+++.+.+.|+++ ++|+.+++..++|+++++++|||.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999887766666 5667778999999999999999999999
Q ss_pred hhHHH
Q 047682 378 REHVL 382 (1425)
Q Consensus 378 ~~~~~ 382 (1425)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88775
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=366.34 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=187.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEE--EEEEEcCc
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNIKISGY 903 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~--G~i~i~g~ 903 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 478889888763 24699999999999999999999999999999999997653 46 99999998
Q ss_pred cCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 904 PKKQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 904 ~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
+... ...+|.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..+.. +..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHH
Confidence 7643 223567999999999999999999999986543 244556667789999999999988876 4579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|+|++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 68899999999996 68899
Q ss_pred ECCCC
Q 047682 1061 VGPLG 1065 (1425)
Q Consensus 1061 ~G~~~ 1065 (1425)
.|++.
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=360.70 Aligned_cols=229 Identities=23% Similarity=0.350 Sum_probs=189.9
Q ss_pred cCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCC
Q 047682 79 VGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPAS 158 (1425)
Q Consensus 79 ~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 158 (1425)
..+..|.-.++|+|+++++. .+++||+++||+|++|+.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 45667778899999999873 133599999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHh
Q 047682 159 GKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVEL 235 (1425)
Q Consensus 159 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 235 (1425)
||||++|+|.++++ . +|+|.+||+++.+... |+.||||||+ .++++.||.+||.+|..- .-++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd-~~LFndTIl~NI~YGn~s----as~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQD-SVLFNDTILYNIKYGNPS----ASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCc-ccccchhHHHHhhcCCCC----cCHHHHHHH
Confidence 99999999999998 5 9999999999987654 5789999995 556677999999998432 224455555
Q ss_pred hHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeE
Q 047682 236 SRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALF 315 (1425)
Q Consensus 236 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~ill 315 (1425)
|++... .|. ...|++.++|.||+++.. |||||||||++|||++.+|+|++
T Consensus 461 ~k~a~~--------------------------hd~---i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGL--------------------------HDV---ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCc--------------------------HHH---HHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 544221 122 245889999999998876 99999999999999999999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 316 MDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 316 LDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
+|||||.||++|+.++++.+... ..++|+|+. .|.. .+...||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~I-vH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMI-VHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEE-Eecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999884 235666664 4443 5778999999999999999999999986
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=362.53 Aligned_cols=214 Identities=26% Similarity=0.383 Sum_probs=186.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..++ ++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 588999988763 34699999999999999999999999999999999997663 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++.+||++|+..+++.+||.|++.+.+.+.. .+..+.++.++++++.++|.+..+..+ +.|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2346679999999999999999999987665432 233344556788999999998888774 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++||++|+++|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++ ++.+.||+|++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999997 68899998
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 6
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=368.27 Aligned_cols=218 Identities=26% Similarity=0.381 Sum_probs=184.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998876543 4779999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. ..+...+++++++.+||++..+..+ ..
T Consensus 104 ~eNi~~~l~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------------------------------AAEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 99999986432210 0112335678899999988777655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|+||||++|||..++..+.+.|+++.+..+. ++|.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~-tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI-TFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998775444 555578999999999999999999999
Q ss_pred EEecChhHHHHHHHhCCCCCCCCCCHHHHH
Q 047682 373 VFQGPREHVLEFFKSMGFECPKRKGVADFL 402 (1425)
Q Consensus 373 v~~G~~~~~~~~F~~~G~~~p~~~~~ad~l 402 (1425)
+..|+++++.+ .|....+++|+
T Consensus 224 ~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHHh--------CcccHHHHHhc
Confidence 99999998843 45544455544
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=330.19 Aligned_cols=205 Identities=26% Similarity=0.316 Sum_probs=177.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC----ccceEEEEccCC--CCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV----PQRTAAYISQHD--VHIG 208 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 208 (1425)
++|+|||++|.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+|++ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999998 999999998776543 347799999985 6789
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
..||++.|.-+.+..+.. +.+.++.++++.+||+...- ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l----~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFL----DR 137 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHH----hc
Confidence 999999998765543221 11223677899999986432 45
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.+..|||||||||+|||||..+|++|++|||||+||+..+.+|++.|.++.+.. +.+++.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeee
Confidence 667899999999999999999999999999999999999999999999998765 4556668999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|++++.++.+++.+
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=362.40 Aligned_cols=210 Identities=25% Similarity=0.387 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999998865443 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+....... . ...+...+++++++.+||++..++.+ ..
T Consensus 92 ~eni~~~~~~~~~~~~------~------------------------~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------P------------------------NAAAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccC------C------------------------CHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 9999997543110000 0 00112335678999999987776554 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+..+ .+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELK-FTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876444 4555589999999999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999884
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=342.04 Aligned_cols=210 Identities=29% Similarity=0.405 Sum_probs=175.6
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4567776652 2469999999999999999999999999999999999765 358999999987543
Q ss_pred -ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 908 -ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 908 -~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
...++.++|++|++.+++.+|++|++.+..... ....+..++.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 223457899999998889999999998765332 1233344556789999999988777653 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998764 899999999986 57788999999997 5666654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=354.29 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=154.8
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
-.+.+.+|.+.++ | +.-+++.+++..++.-...+++|+||+||||+++++.|... +..|-+.+.+
T Consensus 361 p~l~i~~V~f~y~-p----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~-- 425 (582)
T KOG0062|consen 361 PNLRISYVAFEYT-P----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP-- 425 (582)
T ss_pred CeeEEEeeeccCC-C----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--
Confidence 3577888877664 1 11168899999999999999999999999999999998654 2356665543
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCcCCHHH
Q 047682 905 KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 905 ~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGq 983 (1425)
++.++|-.|...-+..+.|.+- .+...++ ++...++ .++-+..+||..- +.. .+.+|||||
T Consensus 426 ------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~~-----si~~LSGGQ 487 (582)
T KOG0062|consen 426 ------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKTEEE----IRRHLGSFGLSGELALQ-----SIASLSGGQ 487 (582)
T ss_pred ------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCCHHH----HHHHHHhcCCCchhhhc-----cccccCCcc
Confidence 4568999998665555555443 3333333 2223332 4667788898642 222 256899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|-||++|.....+|.+|+|||||+.||-.+-..+-++|++. +..||+++|+-+. +-..|+.+++.++|...-+.|.
T Consensus 488 KsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 488 KSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred hhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeecc
Confidence 99999999999999999999999999999999999999876 5689999999764 7789999999999877666665
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 564 ~ 564 (582)
T KOG0062|consen 564 I 564 (582)
T ss_pred H
Confidence 3
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=342.48 Aligned_cols=214 Identities=24% Similarity=0.338 Sum_probs=188.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
+.++|++|.++ ++..+|+|+|+.|++|+.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYP------------GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcC------------CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 67889988874 125799999999999999999999999999999999997663 4799999998854
Q ss_pred ----cccccceEEEeecCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 907 ----QETFARISGYCEQNDIH-SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ----~~~~~~~~gyv~Q~~~~-~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
....++.+|||+|++.. +..-||.|.+.|+..- ...+.++.+++++++++.+++.+.++.. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 34567889999999754 4577999999998643 3566677889999999999999998876 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |.|||++|||.. .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999986 58888999999997 68899
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=342.61 Aligned_cols=207 Identities=24% Similarity=0.338 Sum_probs=174.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567888877631 12469999999999999999999999999999999999765 34799999998753
Q ss_pred c---c---cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 Q---E---TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~---~---~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. . .+++.++|++|++.+++.+||.||+.+....+ ....++.++.++++++.++|.+..+... ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1 24567999999999999999999998875433 1233344566889999999988777653 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 577789999999874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=362.38 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=185.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.+. .+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887663 2469999999999999999999999999999999999765 34799999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
. ...++.+|||+|++.++|.+||+||+.|....+.. ...+.++.++.++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 3 22346799999999999999999999987653211 1234455667789999999999887776 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++.+.+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999866 899999999996 68899999999996 68899998
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 6
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=359.47 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=176.6
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCC
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ--ETFARISGYCEQNDIHSPNVT 928 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 928 (1425)
++.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3569999999999999999999999999999999999765 358999999987543 234567999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 047682 929 VYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008 (1425)
Q Consensus 929 v~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsg 1008 (1425)
|+|++.+.+.++ .....+.++.++++++.++|.+..+..+ +.||||||||++||+||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876554 2233444566889999999988777764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1009 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 68889999999997 688999975
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=363.25 Aligned_cols=214 Identities=22% Similarity=0.320 Sum_probs=186.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899988763 2469999999999999999999999999999999999766 3589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ ..+..+.++.++++++.++|.+..+.. +..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 43 223577999999999999999999999976533 234455566789999999999888876 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||+|+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68899999999996 68899998
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
+
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 6
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=340.56 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=171.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999765 348999999987642 3567899999998888999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
|+.+....+ ....+...+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 998865433 1233344566889999999987766653 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC-CcEEEEECCC
Q 047682 1012 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGPL 1064 (1425)
Q Consensus 1012 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~-Gg~~~y~G~~ 1064 (1425)
.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 57788999999995 3788887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=331.16 Aligned_cols=225 Identities=26% Similarity=0.383 Sum_probs=191.3
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc----ceEEEEccC
Q 047682 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ----RTAAYISQH 203 (1425)
Q Consensus 128 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~ 203 (1425)
.++.+..++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++--+|+
T Consensus 11 ~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 11 SKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred eeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccc
Confidence 44556788999999999999999999999999999999999999999 99999999999887764 457888999
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
...|++|||.||+.-++..+.. +.......+- ..+..+...+...+|+.+||.+.+|+
T Consensus 88 ~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~~-------------------~~~e~~~~e~A~~~Le~vgL~~~a~~ 145 (250)
T COG0411 88 TRLFPGLTVLENVAVGAHARLG---LSGLLGRPRA-------------------RKEEREARERARELLEFVGLGELADR 145 (250)
T ss_pred ccccCCCcHHHHHHHHhhhhhh---hhhhhccccc-------------------hhhHHHHHHHHHHHHHHcCCchhhcc
Confidence 9999999999999998764421 1111111000 00112334567789999999999999
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
..|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+. ++.+|+.+-|+..-++++|||
T Consensus 146 ~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 146 PAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred hhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhccE
Confidence 9886 9999999999999999999999999999999999999999999999763 456777789999999999999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|+||+.|+++.+|+++++.+
T Consensus 220 i~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 220 IVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred EEeccCCcCcccCCHHHHhc
Confidence 99999999999999999864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=319.61 Aligned_cols=206 Identities=27% Similarity=0.366 Sum_probs=182.3
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCCCCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE----TFARISGYCEQNDIHSP 925 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 925 (1425)
++++++++||+.+++||++||+|||||||||.+.++.|...+ .+|.|.+||.++... ..+..+||+||+...|-
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 456899999999999999999999999999999999997663 489999999986542 22345899999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 047682 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP 1005 (1425)
.+||+||++-....+.. +....++++.++++|+.+++.|+++... ..||||||+|+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999877666532 3334566777899999999999999873 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1006 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
++|+||-+-..|.++++.+.+.|.-|++|-|+-. |....+||.+++.+ |++..+|.+.
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 9999999999999999999999999999999987 79999999999997 6889999874
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=356.04 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=183.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478888887763 2469999999999999999999999999999999999765 3489999999875
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++.+||++|++.+++.+||+|++.+.+... ..+..+.++.++++++.++|.+..+..+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234567999999999999999999998755432 1233444456788999999988777764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999997 67789999999996 68899997
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=313.56 Aligned_cols=200 Identities=24% Similarity=0.380 Sum_probs=177.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
.++|+|||+.|++||++-|+||||||||||||+|.+...|+ +|+|.+||+++.... .+|+||+|+|+..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999999999 999999999987653 258999999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+..||.||++|+.+..|.. ..+.+.++.++|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~----------------------------------~~~i~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKP----------------------------------PREIRRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCC----------------------------------HHHHHHHHHHHHHHhccchhhhcC---
Confidence 9999999999998776532 123456788999999999887644
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+..|||||||||+||||++.+|++|+-||||-.||+.++.+|++.+.++.+ .+|+|+..+|+..-+..+-.+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 456999999999999999999999999999999999999999999999965 3666776789988888888899999
Q ss_pred cCCeEEEecC
Q 047682 368 SEGQIVFQGP 377 (1425)
Q Consensus 368 ~~G~iv~~G~ 377 (1425)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987543
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=338.68 Aligned_cols=209 Identities=25% Similarity=0.425 Sum_probs=176.3
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4667776652 2469999999999999999999999999999999999765 358999999987643
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHH
Q 047682 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL 987 (1425)
Q Consensus 908 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl 987 (1425)
..++.++|++|+..+++.+|++||+.+....+. ....+.++.++++++.+++.+..+.. +..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHH
Confidence 345678999999999999999999988654431 23334455688999999998776665 357999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 988 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 988 ~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998877899999999986 57788999999997 5666654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=358.91 Aligned_cols=206 Identities=25% Similarity=0.371 Sum_probs=177.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999876432 2467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+.+...+.. . .+....++.+++.+||++..++.++
T Consensus 131 v~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMS----------T------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 999999755432210 0 0112235668899999988887775
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+++|++++|||||+|||+.++.++++.|+++.+ . +++|+.++|...++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999865 3 4455557899999999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++++|+.+++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=344.96 Aligned_cols=207 Identities=28% Similarity=0.394 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 45999999999999999999999999999999999999998 999999999876532 246799999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++.+.... ... .+....++.+++.+||++..++.++
T Consensus 90 ~~~tv~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 135 (235)
T cd03261 90 DSLTVFENVAFPLREHTR---------LSE------------------------EEIREIVLEKLEAVGLRGAEDLYPA- 135 (235)
T ss_pred CCCcHHHHHHHHHhhccC---------CCH------------------------HHHHHHHHHHHHHcCCchhhcCChh-
Confidence 999999999986432100 000 0112345678899999876666554
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.++||+|++|
T Consensus 136 ----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 136 ----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhcCEEEEE
Confidence 5999999999999999999999999999999999999999999999865434 44555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=360.99 Aligned_cols=215 Identities=24% Similarity=0.352 Sum_probs=187.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..++ +..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488899887663 2469999999999999999999999999999999999866 3589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...+|.+|||+|++.++|.+||.||+.|....+ ..+..+.+++++++++.++|.+..+.. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999976533 234556667789999999999887776 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+|||||||||..++..+.+.|+++.+ .|.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 68899999999996 68899998
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 63
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=311.29 Aligned_cols=196 Identities=26% Similarity=0.326 Sum_probs=171.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLY 935 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~ 935 (1425)
.+++.|++||++||+||||||||||||+|+|...+ .+|+|.|||.+... ....|-++.++|+..+|..+||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 47788999999999999999999999999998764 48999999998654 3456778999999999999999999976
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~ 1015 (1425)
+..- ....+ .+.++.++.++..+||..+.+.+. ..||||||||+++||+|+++-+||+||||+|.||+.-+.
T Consensus 95 Gl~P--~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSP--GLKLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCc--ccccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 5321 11223 344567899999999999988874 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1016 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1016 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
++...+.+++++ +.|++++||+|+ +.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999854 899999999997 79999999999997 799999986
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=363.97 Aligned_cols=206 Identities=23% Similarity=0.345 Sum_probs=178.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998866443 4789999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
.||+.|+.+..+.. ..+...+++++++.+||.+..+..+ ++
T Consensus 109 ~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~l~L~~~~~~~~-----~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------------------------------KAEIASRVNEMLGLVHMQEFAKRKP-----HQ 149 (377)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 99999976532210 0112335678999999987766554 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|+|||||++||..++..+.+.|+++.+..+ .+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999876555 4555578999999999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999884
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=340.15 Aligned_cols=212 Identities=29% Similarity=0.385 Sum_probs=178.9
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 4677776652 2469999999999999999999999999999999999765 348999999976532
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 908 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 908 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
...++.++|++|+..+++.+||+|++.+....+ ..+.++.++.++++++.++|.+..+..+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 233467899999999999999999998875443 2233344556889999999987777653 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999986 57788999999997 677888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=338.21 Aligned_cols=210 Identities=26% Similarity=0.386 Sum_probs=176.5
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 4677776653 2469999999999999999999999999999999999765 358999999987543
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 908 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 908 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
. ..++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 22457999999998888999999998765432 1233444566788999999987777653 5799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++++|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999864 899999999986 57788999999987 5777765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=357.24 Aligned_cols=206 Identities=29% Similarity=0.395 Sum_probs=177.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++|+|+|+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875421 2457999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+.++..+... .+....++++++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998765432100 0112346778999999987777665
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+++|++++|||||+|||+.++..+++.|+++.+ . +++|+.++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999865 3 4555667889999999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=359.55 Aligned_cols=217 Identities=22% Similarity=0.300 Sum_probs=183.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++++++.. ..++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678888776310 113579999999999999999999999999999999999865 35899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
.. ..++.+||++|+..+++.+||+||+.+....+ ..+.++.++.++++++.+||.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 21 23567999999999999999999999875443 233444556788999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999996 6888
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99875
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=326.46 Aligned_cols=217 Identities=26% Similarity=0.350 Sum_probs=179.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++.+|++..++... ....+|+|||++|.+||++||+|+||||||||.++|+|...+ ..|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 367888887764221 112599999999999999999999999999999999997663 589999999875
Q ss_pred Ccc----cccceEEEeecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCc
Q 047682 906 KQE----TFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSG 978 (1425)
Q Consensus 906 ~~~----~~~~~~gyv~Q~~~--~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~ 978 (1425)
... .+.+.+.+|+||+. +.|..||++.|.-.... .+.++.+++ +.++++.+||.+- .+.. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~~--i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQR--IAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHHH--HHHHHHHcCCCHHHHhcC-----chh
Confidence 432 46778999999974 56899999998755432 233343333 8999999999753 3332 457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||||||++|||||+.+|++|+||||||.||+..+..|++.|.++.++ |.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 789999999987 47789999999997 68
Q ss_pred EEEECCCC
Q 047682 1058 EIYVGPLG 1065 (1425)
Q Consensus 1058 ~~y~G~~~ 1065 (1425)
++..+|.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999974
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=342.65 Aligned_cols=215 Identities=27% Similarity=0.360 Sum_probs=178.4
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4567766552 2469999999999999999999999999999999999765 347999999987543
Q ss_pred c---c-ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 047682 908 E---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD-------VDSETRRMFLEEIMELVELNPLRQSLVGLPGV 976 (1425)
Q Consensus 908 ~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 976 (1425)
. . .++.++|++|++.+++.+||+|++.+....+.... ....+.++.++++++.+++.+..+.. +
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----A 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----h
Confidence 1 1 23468999999999999999999988654321110 12334455688999999998776665 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999877999999999997 57788999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 78888875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=361.80 Aligned_cols=215 Identities=25% Similarity=0.363 Sum_probs=184.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377888887763 2469999999999999999999999999999999999765 3479999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...++.+||++|+..+++.+||+||+.|....+ ..+.++.++.++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 123467999999999999999999999876543 2334455567899999999988777763 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999996 68889998
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 63
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=363.34 Aligned_cols=206 Identities=26% Similarity=0.404 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999998865433 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. . .+...+++++++.+||++..++.++ .
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~lgL~~~~~~~~~-----~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------K------------------------EEINQRVNQVAEVLQLAHLLDRKPK-----A 133 (369)
T ss_pred HHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 99999975432210 0 0112346778999999877776554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+..+. +++.++|+..++.+++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~-tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR-TMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC-EEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998764444 455578888999999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=319.52 Aligned_cols=213 Identities=22% Similarity=0.367 Sum_probs=182.5
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc----ceEEEEccCC
Q 047682 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ----RTAAYISQHD 204 (1425)
Q Consensus 129 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d 204 (1425)
++.+++++++|||+.+++||+++|+|||||||||...++.|+..|+ +|+|.+||.+++.+... ..+||+||+.
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~ 88 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEA 88 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccc
Confidence 3345567999999999999999999999999999999999999999 99999999999887653 4589999999
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
..|-.+||+|||.-..+.+.... ...+.+.+.+.+|+.|.|.++++..
T Consensus 89 SIFr~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~~ 136 (243)
T COG1137 89 SIFRKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLRDSK 136 (243)
T ss_pred hHhhcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHhcCc
Confidence 99999999999987654331100 0012234577899999999999865
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
-. .||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++.+.+. +.-|+..-|...|+.++|||.
T Consensus 137 a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r--giGvLITDHNVREtL~i~dRa 209 (243)
T COG1137 137 AY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR--GIGVLITDHNVRETLDICDRA 209 (243)
T ss_pred cc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC--CceEEEccccHHHHHhhhheE
Confidence 43 49999999999999999999999999999999999999999999998652 444555678899999999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
+++++|++..+|+++++.+
T Consensus 210 YIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 210 YIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EEEecCeEEecCCHHHHhc
Confidence 9999999999999999864
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=356.98 Aligned_cols=206 Identities=25% Similarity=0.371 Sum_probs=176.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 46999999999999999999999999999999999999998 9999999998865432 36799999998899
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------K------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 9999999999875432210 0 011234677899999987776655
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 45999999999999999999999999999999999999999999999876434 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=351.51 Aligned_cols=230 Identities=23% Similarity=0.395 Sum_probs=191.2
Q ss_pred cCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCC
Q 047682 79 VGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPAS 158 (1425)
Q Consensus 79 ~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 158 (1425)
.....++..+.|+|+++.++. .+++|+||||++.||+.+||+||||+
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~p---------------------------------~k~vl~disF~v~pGktvAlVG~SGa 575 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYDP---------------------------------GKPVLSDISFTVQPGKTVALVGPSGA 575 (790)
T ss_pred CCccccCCeEEEEEeEEecCC---------------------------------CCceeecceEEecCCcEEEEECCCCC
Confidence 334457789999999998743 35699999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHh
Q 047682 159 GKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVEL 235 (1425)
Q Consensus 159 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 235 (1425)
||||+|++|-++.+.+ +|.|+++|++++... .|+.||.|||+..+ ++.|+..||.|+.
T Consensus 576 GKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL-FNdTI~yNIryak--------------- 636 (790)
T KOG0056|consen 576 GKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL-FNDTILYNIRYAK--------------- 636 (790)
T ss_pred chhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCccee-ecceeeeheeecC---------------
Confidence 9999999999999988 999999999987543 46789999996554 4669999999862
Q ss_pred hHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeE
Q 047682 236 SRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALF 315 (1425)
Q Consensus 236 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~ill 315 (1425)
|++..|++..|+. +....| +++++++.++|+||+++.+ |||||||||+|||+++..|.+++
T Consensus 637 ----------~~AsneevyaAAk-----AA~IHd---rIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIl 697 (790)
T KOG0056|consen 637 ----------PSASNEEVYAAAK-----AAQIHD---RILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIIL 697 (790)
T ss_pred ----------CCCChHHHHHHHH-----HhhHHH---HHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEE
Confidence 3333333333221 112223 4588999999999999997 99999999999999999999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 316 MDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 316 LDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
|||.||+||..+...|..+|.+++. ++|+|+.. |+..+.-.+|.|+++++|+|++.|.++|++.
T Consensus 698 LDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 698 LDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999986 67887743 3345667899999999999999999999975
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=338.75 Aligned_cols=215 Identities=27% Similarity=0.418 Sum_probs=178.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 4677887766310 011269999999999999999999999999999999999765 34899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 907 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..+.. +..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHH
Confidence 3 234567999999999999999999998765433 223444556788999999998877765 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999997 5666543
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=341.28 Aligned_cols=212 Identities=28% Similarity=0.375 Sum_probs=178.4
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4667776652 2469999999999999999999999999999999999765 347999999987532
Q ss_pred c---c-ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 908 E---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 908 ~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
. . .++.++|++|++.+++.+||+||+.+....+ .......++.++++++.+++.+..+.. +..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 1 1 2346899999999999999999998764332 122334455678999999998776665 35799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999997 68889999999986 67888887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=352.89 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=183.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 367888887763 3469999999999999999999999999999999999765 3589999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++.+||++|++.+++.+||.|++.+.+.++. .+.++.++.++++++.+||.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345679999999999999999999998776542 233444556889999999998887764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++||++|+++|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999996 68889999999996 68899998
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 216 ~ 216 (301)
T TIGR03522 216 L 216 (301)
T ss_pred H
Confidence 6
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=357.80 Aligned_cols=203 Identities=24% Similarity=0.294 Sum_probs=178.2
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cc----cceEEEeecCCCC
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TF----ARISGYCEQNDIH 923 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~~~~ 923 (1425)
.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.... .. ++.+|||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4569999999999999999999999999999999999876 3589999999876532 22 5689999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 047682 924 SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003 (1425)
Q Consensus 924 ~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLD 1003 (1425)
+|.+||+||+.|..... ..+.++.++++.++++.++|.+..+.. +..|||||||||+|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 345556677889999999998877776 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|||++||+.++..+++.++++.++ |+|||++||++. ++.+.+|++++|++ |+++..|++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 999999999999999999998754 899999999986 57889999999986 6889999753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=340.93 Aligned_cols=217 Identities=28% Similarity=0.390 Sum_probs=180.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887763 2469999999999999999999999999999999999765 3589999999875
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+.++.++++++.++|.+..+.. +..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHH
Confidence 431 2245689999999988899999999886543211 0012233445678899999998776665 35799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999865 899999999986 57788999999986 6788888
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=361.42 Aligned_cols=218 Identities=28% Similarity=0.361 Sum_probs=184.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377888887763 3579999999999999999999999999999999999765 3589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ...++.+||++|+..+++.+||+|++.+....... .....+..++.++++++.+++.+..+.. ++.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 43 34567799999999998999999999875321100 0111233456789999999999888776 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
|||||+.|||+|+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999997 58889999999996 678899
Q ss_pred CCCC
Q 047682 1062 GPLG 1065 (1425)
Q Consensus 1062 G~~~ 1065 (1425)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=337.71 Aligned_cols=221 Identities=37% Similarity=0.624 Sum_probs=180.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-ceEEEEEEEcCccC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKISGYPK 905 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~-~~~~G~i~i~g~~~ 905 (1425)
+.|+|+++.++.. +..+.+|+|+|++|++||+++|+||||||||||+++|+|..+. .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4577887776311 0135799999999999999999999999999999999997541 13589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE-IMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.....++.++|++|++.+++.+||+||+.+......+...........+++ .++.+++.+..+.. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556789999999999999999999998765433222222223334555 88889988776654 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998877999999999985468899999999997 6777765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.99 Aligned_cols=207 Identities=29% Similarity=0.425 Sum_probs=171.5
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 467777666310 011469999999999999999999999999999999999765 358999999987542
Q ss_pred c------c-ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 908 E------T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 908 ~------~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. . .++.++|++|++.+++.+||+|++.+....+ .......++.++++++.+||.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcC
Confidence 1 1 2457999999999999999999999876543 122333455688999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|++|
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 9999999999999999999999999999999999999999999987 5899999999986 35 489999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=339.46 Aligned_cols=213 Identities=24% Similarity=0.280 Sum_probs=176.1
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC-----CCceEEEEEEEcC
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNIKISG 902 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~-----~~~~~~G~i~i~g 902 (1425)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4667766552 236999999999999999999999999999999999976 3 4589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ..+++.++|++|++.++ .+||+||+.+....+. ....++.++.++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999998887 7999999988654331 11222234567899999999876655421 25
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|+++ ++.+.+|++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 79999999999999999999999999999999999999999999999876 99999999986 57788999999997 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 8888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=334.80 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=173.8
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4667776652 2469999999999999999999999999999999999765 358999999987542
Q ss_pred -ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 908 -ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 908 -~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.+++.+..+.. +..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHH
Confidence 2335678999999988999999999987654321 1 124478899999998877765 34799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998877899999999986 57778999999997 5777654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=321.34 Aligned_cols=208 Identities=25% Similarity=0.402 Sum_probs=173.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc----ceEEEEccCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ----RTAAYISQHDVHI 207 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 207 (1425)
++.+||+|||+++++||+++|+||||+|||||||+|+|..++. +|+|.++|++++...+. +.++||||....|
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 4467999999999999999999999999999999999999987 99999999999887653 5699999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-Cccccccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG-LDVCADTMVG 286 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg 286 (1425)
+.|||+|||..++..... .. . ...+ .|.+.+.|= |.+-.+..-|
T Consensus 91 ~~LTVeENL~~g~~~~~~-~~----------~------~~~~------------------~e~v~~lFP~Lker~~~~aG 135 (237)
T COG0410 91 PRLTVEENLLLGAYARRD-KE----------A------QERD------------------LEEVYELFPRLKERRNQRAG 135 (237)
T ss_pred hhCcHHHHHhhhhhcccc-cc----------c------cccc------------------HHHHHHHChhHHHHhcCccc
Confidence 999999999987543210 00 0 0000 222333331 3333455555
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
.|||||||-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+.. +.+|+.+.|......+++|+.++
T Consensus 136 -----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~-g~tIlLVEQn~~~Al~iaDr~yv 209 (237)
T COG0410 136 -----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG-GMTILLVEQNARFALEIADRGYV 209 (237)
T ss_pred -----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcC-CcEEEEEeccHHHHHHhhCEEEE
Confidence 499999999999999999999999999999999999999999999997643 46777789999999999999999
Q ss_pred EcCCeEEEecChhHHHH
Q 047682 367 ISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~~ 383 (1425)
|.+|+|++.|+.+++.+
T Consensus 210 le~Griv~~G~~~eL~~ 226 (237)
T COG0410 210 LENGRIVLSGTAAELLA 226 (237)
T ss_pred EeCCEEEEecCHHHHhc
Confidence 99999999999998863
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=339.37 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=180.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5677887765310 011369999999999999999999999999999999999865 35799999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
.. ..++.++|++|++.+++.+|++||+.+....+ ........+.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 21 23567899999999999999999998865433 123344455678999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999986 6888
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=334.98 Aligned_cols=206 Identities=26% Similarity=0.358 Sum_probs=173.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56778877652 12469999999999999999999999999999999999765 34899999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
.. .+++.++|++|++.+++.+|++||+.+....+ .......++.++++++.+++.+..+.. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 24567999999999999999999998875432 123334456688999999998766655 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999875
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=349.96 Aligned_cols=206 Identities=25% Similarity=0.381 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999999998 999999998875322 2467999999988889999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+.....+.. . .+....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMS----------T------------------------REIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhHhcCchh-----
Confidence 999998754322110 0 0111235668889999888777665
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999865 3 4455667888899999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+.+++.+
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=320.71 Aligned_cols=212 Identities=25% Similarity=0.401 Sum_probs=191.7
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
+++++|+.++ +++.+++|+||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.+..
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5667766544 45789999999999999999999999999999999999876 45899999999887
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
+.. +.++||.|.+.-++|.+||.|.|.|-|.|+ .++.++.+..++.+|+.+++......+ ++.||-|++|+
T Consensus 68 ~~~-~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQK 138 (300)
T COG4152 68 QEI-KNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQK 138 (300)
T ss_pred hhh-hhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHH
Confidence 643 456899999999999999999999999887 577788888899999999999887776 46799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+.+-.+++++|++++||||+|||||.+.+.+.+.+.++.+.|.|||+++|+++ .+-++||++++|++ |+.|.+|+.
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 99999999999999999999999999999999999999999999999999997 68999999999997 678899986
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=342.05 Aligned_cols=204 Identities=28% Similarity=0.330 Sum_probs=170.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc------ccccceEEEeecCCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ------ETFARISGYCEQNDIHSP 925 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 925 (1425)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 469999999999999999999999999999999999765 347999999987542 123567899999999999
Q ss_pred CCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEE
Q 047682 926 NVTVYESLLYSAWLRL-----PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1000 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~il 1000 (1425)
.+||+||+.+...... .........++.+.++++.++|.+..+.. +..||||||||++||++|+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 00111223345678899999998766654 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1001 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1001 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999997 57779999999997 678888875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=334.92 Aligned_cols=200 Identities=29% Similarity=0.443 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999998 9999999998764332 4579999999888889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.++....+.. . ......++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------K------------------------AEIRARVRELLELVGLEGLLNRYPH-----E 130 (213)
T ss_pred HHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 99999864321100 0 0012235678899999877666554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG-ITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875434 4555578888899999999999999999
Q ss_pred EEec
Q 047682 373 VFQG 376 (1425)
Q Consensus 373 v~~G 376 (1425)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=335.97 Aligned_cols=213 Identities=24% Similarity=0.389 Sum_probs=178.0
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++. .++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 46677766531 11469999999999999999999999999999999999765 358999999987543
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 908 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 908 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
..+++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHH
Confidence 2345679999999998889999999988654331 233334456789999999987776653 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999875 699999999996 57788999999987 678888875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=337.45 Aligned_cols=210 Identities=30% Similarity=0.439 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999999998 9999999998754332 3579999999888889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.++....+...+ + + ..+....++.+++.+||++..++.++ .
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------P--P-----------EAEIRAKVHELLKLVQLDWLADRYPA-----Q 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------C--C-----------HHHHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 9999986532211000 0 0 00112245678899999876665554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|+..++.+.+|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999987643444 55577888889999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
++.|+.+++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=338.67 Aligned_cols=214 Identities=21% Similarity=0.334 Sum_probs=180.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56778777652 2469999999999999999999999999999999999765 35899999998754
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 907 Q-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
. ...++.++|++|++.+++.+||+||+.+..... ......+.++.+.++++.+||.+..+.. +..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 233567999999999899999999998754211 1223344456688999999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999996 688898
Q ss_pred CCC
Q 047682 1062 GPL 1064 (1425)
Q Consensus 1062 G~~ 1064 (1425)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=385.45 Aligned_cols=225 Identities=22% Similarity=0.404 Sum_probs=190.2
Q ss_pred eeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 047682 86 IEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLL 165 (1425)
Q Consensus 86 ~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~ 165 (1425)
.+|.|+|+++.+.. +++.+||+|+|+++++|+.+||+|||||||||...
T Consensus 986 G~I~~~~V~F~YPs-------------------------------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~ 1034 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPT-------------------------------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVIS 1034 (1228)
T ss_pred eEEEEeeeEeeCCC-------------------------------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHH
Confidence 56999999987632 23467999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhc
Q 047682 166 ALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242 (1425)
Q Consensus 166 ~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 242 (1425)
+|-..++|+ +|.|.+||+++++.+. |+++|.|+|+|.+| +.|+||||.||.+.
T Consensus 1035 LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~~~-------------------- 1090 (1228)
T KOG0055|consen 1035 LLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGSEE-------------------- 1090 (1228)
T ss_pred HHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhh-cccHHHHHhccCCC--------------------
Confidence 999999998 9999999999998875 58899999998877 55999999998210
Q ss_pred CCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCC
Q 047682 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTG 322 (1425)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsg 322 (1425)
.+.+++++|+... ...+.+ .+|++.+||.||+++.. ||||||||++||||+++||+||||||.||+
T Consensus 1091 -----vs~~eIi~Aak~A-----NaH~FI---~sLP~GyDT~vGerG~Q-LSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1091 -----VSEEEIIEAAKLA-----NAHNFI---SSLPQGYDTRVGERGVQ-LSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred -----CCHHHHHHHHHHh-----hhHHHH---hcCcCcccCccCcccCc-CCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 1223334443221 223333 57999999999998875 999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 323 LDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 323 LD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
||+++...+.+.|++... ++|+|++ .|+..+.+.+|.|+|+++|+|+++|+++++++
T Consensus 1157 LDseSErvVQeALd~a~~--gRT~IvI--AHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAME--GRTTIVI--AHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhhhHHHHHHHHHHhhc--CCcEEEE--ecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999753 6787774 34556889999999999999999999999985
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=335.59 Aligned_cols=216 Identities=24% Similarity=0.323 Sum_probs=178.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 7888988876310 011469999999999999999999999999999999999765 35899999998754
Q ss_pred ccc------c-cceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 907 QET------F-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~~~------~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
... . ++.++|++|+..+++.+|++||+.+....+ ....++.++.++++++.+||.+..+.. +..|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 146 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSEL 146 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhC
Confidence 311 2 256899999998899999999998865432 223344456788999999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|++ |++
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~i 223 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GRL 223 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999875 5899999999986 34 44689999986 688
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
+..|+.
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 888875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=335.90 Aligned_cols=205 Identities=30% Similarity=0.404 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999998 999999998765321 2357999999988899999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+..+..+.. ..+....++.+++.+||++..++.++
T Consensus 90 v~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~----- 130 (220)
T cd03265 90 GWENLYIHARLYGVP----------------------------------GAERRERIDELLDFVGLLEAADRLVK----- 130 (220)
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 999999865432110 00112346778999999877776654
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG-MTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 5999999999999999999999999999999999999999999999876434 455557888889999999999999999
Q ss_pred EEEecChhHH
Q 047682 372 IVFQGPREHV 381 (1425)
Q Consensus 372 iv~~G~~~~~ 381 (1425)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=334.24 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=172.4
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4567776652 12469999999999999999999999999999999999765 358999999986532
Q ss_pred ------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 908 ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 908 ------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
..+++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..+.. +..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCH
Confidence 1245679999999999999999999988754331 23344456688999999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999777999999999986 577789999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=333.56 Aligned_cols=191 Identities=29% Similarity=0.390 Sum_probs=162.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCC-CCCCCCHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDI-HSPNVTVY 930 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 930 (1425)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999765 358999999987644344567999999974 34467999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD 1010 (1425)
||+.+..... . . ..+.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 1 124578899999998877765 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 1011 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++| ++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G-~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANG-AI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC-EE
Confidence 99999999999999777999999999986 577789999999974 54
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=383.41 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=168.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|.+||+++++... ++.++||+|++.+| +.|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~T 438 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HGT 438 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCC-CcC
Confidence 5899999999999999999999999999999999999 87 9999999999987654 57899999976655 569
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++|||.++. |+.+.+++.+++...+ .+..+ -.|++..||.||+++.
T Consensus 439 I~eNI~~g~-------------------------~~~~~eei~~al~~a~------l~~~i--~~lp~G~dT~vge~G~- 484 (588)
T PRK11174 439 LRDNVLLGN-------------------------PDASDEQLQQALENAW------VSEFL--PLLPQGLDTPIGDQAA- 484 (588)
T ss_pred HHHHhhcCC-------------------------CCCCHHHHHHHHHHhC------HHHHH--HhcccccccccccCCC-
Confidence 999999862 1122233333332211 11122 2467788999998765
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++||||++++|+|++||||||+||+.++..|.+.|+++.+ ++|+|++ +|.. +..+.||+|++|++|+
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiI-tHrl-~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMV-THQL-EDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEE-ecCh-HHHHhCCEEEEEeCCe
Confidence 5999999999999999999999999999999999999999999988743 5666664 4444 5677899999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++++|+++++.+
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999999874
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=345.07 Aligned_cols=224 Identities=27% Similarity=0.390 Sum_probs=180.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-------CccceEEEEccCC-CC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-------VPQRTAAYISQHD-VH 206 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 206 (1425)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+++.. ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 99999999987531 1246799999985 34
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMV 285 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~v 285 (1425)
+...||.||+.|+.+..+.. + .+...+++++++.+||. ...++.
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~- 141 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------K------------------------EKAEKIAAEKLEMVGLADEFWEKS- 141 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhccCC-
Confidence 45579999999975432210 0 11223467788999996 344443
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++.++||+|+
T Consensus 142 ----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 142 ----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 456999999999999999999999999999999999999999999998864 3 4455667888889999999999
Q ss_pred EEcCCeEEEecChhHHH---HHHHhCCCCCCCCCCHHHHH
Q 047682 366 LISEGQIVFQGPREHVL---EFFKSMGFECPKRKGVADFL 402 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~---~~F~~~G~~~p~~~~~ad~l 402 (1425)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999874 34556677776654444433
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=346.26 Aligned_cols=218 Identities=23% Similarity=0.351 Sum_probs=176.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-------CccceEEEEccCC-C
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-------VPQRTAAYISQHD-V 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 205 (1425)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999999998 99999999987531 1235799999985 2
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 284 (1425)
.+...||+||+.|+.+..+.. ..+....++.+++.+||+ ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------------------------------EEDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCChhhhhCC
Confidence 455679999999875432110 001123467789999996 445554
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.++||+|
T Consensus 143 ~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g-~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 P-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG-LTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999876434 45555788899999999999
Q ss_pred EEEcCCeEEEecChhHHH---HHHHhCCCCCCC
Q 047682 365 ILISEGQIVFQGPREHVL---EFFKSMGFECPK 394 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~---~~F~~~G~~~p~ 394 (1425)
++|++|+++++|+++++. +.+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999988874 233344554443
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=340.28 Aligned_cols=214 Identities=27% Similarity=0.369 Sum_probs=179.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888887763 2469999999999999999999999999999999999765 34799999998653
Q ss_pred c-----------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 047682 907 Q-----------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG 975 (1425)
Q Consensus 907 ~-----------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 975 (1425)
. ...++.++|++|++.+++..|++||+.+...... ....+..++.++++++.++|.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235578999999999999999999987542111 123344456688999999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 4579999999999999999999999999999999999999999999999877999999999986 57788999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 678888875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=346.10 Aligned_cols=219 Identities=21% Similarity=0.303 Sum_probs=180.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 36788888876311 0012469999999999999999999999999999999999765 3589999999876
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc--cccccccCCCCCC
Q 047682 906 KQ-----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN--PLRQSLVGLPGVS 977 (1425)
Q Consensus 906 ~~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~g~~~~~ 977 (1425)
.. ...++.+||++|++. .+...||+|++.|..... +.+.++.++.++++++.+||. +..+.. +.
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PF 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cc
Confidence 43 134567999999863 334579999998865432 344555666789999999996 555554 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-G 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999865 899999999986 57788999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13637 222 KCELQGTP 229 (287)
T ss_pred EEEEECCH
Confidence 88889875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=339.20 Aligned_cols=213 Identities=28% Similarity=0.379 Sum_probs=178.1
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ +.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYG------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeC------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 4567776652 11469999999999999999999999999999999999765 347999999987532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc--ccccccCCCCCCcCCHH
Q 047682 908 ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP--LRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 908 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~lSgG 982 (1425)
...++.++|++|++.+++.+||+||+.+....+ ..+.+..++.+.++++.+++.+ ..+.. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 234567899999999999999999998865433 2233444566889999999985 55554 4579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 899999999986 57788999999997 678888
Q ss_pred CCC
Q 047682 1062 GPL 1064 (1425)
Q Consensus 1062 G~~ 1064 (1425)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=343.39 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=175.7
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccC
Q 047682 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQH 203 (1425)
Q Consensus 131 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 203 (1425)
.+.+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++|++|+
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 34567999999999999999999999999999999999999998 9999999998764321 2479999999
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
+.+++.+||+||+.++....+.. . ......++++++.+||++..++
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~ 156 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQGVP----------R------------------------AEREERAAEALELVGLEGWEHK 156 (269)
T ss_pred cccCCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhC
Confidence 88888999999999865432110 0 0112245678899999877776
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.++ .|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++..+. +|+.++|+.+++.+++|+
T Consensus 157 ~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~-tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 157 YPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK-TIVFITHDLDEALRLGDR 230 (269)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhcCE
Confidence 664 59999999999999999999999999999999999999999999998754344 555578888889999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 047682 364 IILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~ 382 (1425)
+++|++|++++.|+++++.
T Consensus 231 v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 231 IAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=355.94 Aligned_cols=206 Identities=28% Similarity=0.452 Sum_probs=169.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 211 (1425)
++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.++.. .+++++||+|++.++ ..|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf-~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF-AGT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccc-ccc
Confidence 6899999999999999999999999999999999999998 999999999988776 468999999976655 569
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
+||||.++.. +.+.+++.+++... .+.+.+.-++..||.+|+.+ +
T Consensus 411 ireNi~l~~~-------------------------~~s~e~i~~al~~a---------~l~~~v~~p~GLdt~ige~G-~ 455 (559)
T COG4988 411 IRENILLARP-------------------------DASDEEIIAALDQA---------GLLEFVPKPDGLDTVIGEGG-A 455 (559)
T ss_pred HHHHhhccCC-------------------------cCCHHHHHHHHHHh---------cHHHhhcCCCcccchhccCC-C
Confidence 9999999732 12222222222111 12223333567799999765 5
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
+|||||+|||++||||+.+++++++||||++||.+|+..|.+.|.++++ ++|+++ ++|. .+...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHr-l~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHR-LEDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcC-hHHHhcCCEEEEecCCc
Confidence 7999999999999999999999999999999999999999999999876 466666 3443 45677899999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999864
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=345.70 Aligned_cols=218 Identities=24% Similarity=0.407 Sum_probs=177.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-----ccceEEEEccCCC-CC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-----PQRTAAYISQHDV-HI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 207 (1425)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999886532 2467999999853 45
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc--ccccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD--VCADTMV 285 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~v 285 (1425)
...||+||+.|+....+.. .++....++++++.+||+ +..|+.
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~- 141 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDKS- 141 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccCC-
Confidence 5689999999864322110 011223467889999996 445544
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
++.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++.. +++|+.++|+..++.++||+|+
T Consensus 142 ----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 142 ----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 45699999999999999999999999999999999999999999999987643 4556667888889999999999
Q ss_pred EEcCCeEEEecChhHHHH---HHHhCCCCCCC
Q 047682 366 LISEGQIVFQGPREHVLE---FFKSMGFECPK 394 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~---~F~~~G~~~p~ 394 (1425)
+|++|+++++|+.+++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23344555443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=343.57 Aligned_cols=203 Identities=25% Similarity=0.303 Sum_probs=172.9
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---T----FARISGYCEQNDI 922 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~ 922 (1425)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 34579999999999999999999999999999999999765 3479999999875421 1 1356899999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEE
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illL 1002 (1425)
+++.+||+||+.+....+ .......++.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998865432 1233444566889999999988777764 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1003 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1003 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999986 57788999999986 678888875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=382.49 Aligned_cols=253 Identities=26% Similarity=0.418 Sum_probs=196.1
Q ss_pred HhHHHHHHhhhhcccCHHHHHHHHHHHHhhcCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhcccc
Q 047682 49 ERQRLIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILP 128 (1425)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (1425)
....-.||+.++.++.++ ..+.... ...+..+++|+|+++.++.
T Consensus 297 ~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~~----------------------------- 340 (567)
T COG1132 297 RASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYPG----------------------------- 340 (567)
T ss_pred HHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcCC-----------------------------
Confidence 345555666666665443 1111111 2334567999999988632
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCC
Q 047682 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDV 205 (1425)
Q Consensus 129 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 205 (1425)
++++|+|+|++++|||.+||+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.
T Consensus 341 ----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~ 413 (567)
T COG1132 341 ----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPL 413 (567)
T ss_pred ----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccce
Confidence 345999999999999999999999999999999999999998 9999999999987764 588999999666
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+|. .||+|||.++.. +.+.|++.+++...+ ....++ .|+++.||.|
T Consensus 414 LF~-~TI~~NI~~g~~-------------------------~at~eei~~a~k~a~------~~d~I~--~lp~g~dt~v 459 (567)
T COG1132 414 LFS-GTIRENIALGRP-------------------------DATDEEIEEALKLAN------AHEFIA--NLPDGYDTIV 459 (567)
T ss_pred eec-ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------hHHHHH--hCccccccee
Confidence 555 899999999732 222233334332221 112222 3577899999
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
|+++. .||||||||++||||++.+|++++||||||+||+.++..|.+.++++.+ ++|+++ +.|..+.+ ..+|+|+
T Consensus 460 ge~G~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRlsti-~~aD~Ii 534 (567)
T COG1132 460 GERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLI-IAHRLSTI-KNADRII 534 (567)
T ss_pred cCCCc-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEE-EeccHhHH-HhCCEEE
Confidence 97665 5999999999999999999999999999999999999999999997753 467777 56665444 4599999
Q ss_pred EEcCCeEEEecChhHHHH
Q 047682 366 LISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~ 383 (1425)
+|++|++++.|++++++.
T Consensus 535 Vl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 535 VLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEECCEEEEecCHHHHHH
Confidence 999999999999999975
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=338.75 Aligned_cols=212 Identities=26% Similarity=0.353 Sum_probs=178.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++|++++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56778776652 2469999999999999999999999999999999999765 34799999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
. ..+.+||++|+..+++.+||.||+.+....+ .....+.++.++++++.++|.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345799999998889999999998764432 223344456688999999998776654 35799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC-CcEEEEECCC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGPL 1064 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~-Gg~~~y~G~~ 1064 (1425)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999997 57889999999985 5788887764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.14 Aligned_cols=199 Identities=29% Similarity=0.441 Sum_probs=167.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---c-ccceEEEeecCCCCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---T-FARISGYCEQNDIHSPNV 927 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~~l 927 (1425)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 469999999999999999999999999999999999865 3479999999875431 1 245689999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPT 1006 (1425)
|++||+.+....+. ..+.++.+.++++.+ ++.+..+.. +..||||||||++|||+|+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654321 122334567778887 466655554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1007 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1007 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999877899999999986 57788999999986 688888875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=333.55 Aligned_cols=194 Identities=22% Similarity=0.354 Sum_probs=163.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHIG 208 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 208 (1425)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 5999999999999999999999999999999999999998 999999999875432 2357999999988899
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.+||+||+.++.+..+.. . .+....++++++.+||++..++.++
T Consensus 94 ~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 137 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVP----------P------------------------RDANERVSAALEKVGLEGKAHALPM-- 137 (216)
T ss_pred cccHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCChh--
Confidence 999999999875432110 0 0112345678899999877666554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++.++||++++|+
T Consensus 138 ---~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 138 ---QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RG-TTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 5999999999999999999999999999999999999999999999864 34 455557888889999999999999
Q ss_pred CCeE
Q 047682 369 EGQI 372 (1425)
Q Consensus 369 ~G~i 372 (1425)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9975
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=340.61 Aligned_cols=218 Identities=25% Similarity=0.279 Sum_probs=177.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 45677776552 12469999999999999999999999999999999999765 35799999998753
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 047682 907 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL-----PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG 975 (1425)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 975 (1425)
. ..+++.++|++|++.+++.+||+||+.+...... .........++.+.++++.++|.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999999999999999976421100 00111223345678899999998776665
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 57788999999997
Q ss_pred CcEEEEECCCC
Q 047682 1055 GGYEIYVGPLG 1065 (1425)
Q Consensus 1055 Gg~~~y~G~~~ 1065 (1425)
|++++.|+..
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 6788888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=342.79 Aligned_cols=214 Identities=27% Similarity=0.350 Sum_probs=179.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 77888887763 12359999999999999999999999999999999999765 34899999998764
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 Q---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ...++.+||++|++. .++..||.||+.|..... ..+..+.++.++++++.++|.+..+..+ ..||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHH
Confidence 3 233567999999863 445689999998764321 2344444566889999999988777663 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 220 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEG 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 47788999999986 6788999
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 221 ~~ 222 (274)
T PRK13647 221 DK 222 (274)
T ss_pred CH
Confidence 85
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=317.61 Aligned_cols=213 Identities=28% Similarity=0.403 Sum_probs=178.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++.+|++..| ++.++|++||+++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5677777655 346899999999999999999999999999999999997653 4799999999865
Q ss_pred c----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCccccccccCCCCCCcCCH
Q 047682 907 Q----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lSg 981 (1425)
. +..++.++||||....||.+||+|||..++..+.. ++..+..++++.+.+ .|.+.++.+.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 4 23466799999999999999999999987654421 112222267777776 36666666654 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||-++|||||+++|++|+|||||.||-|.-.++|.++|+++.++ |.||+.+-++.. ...+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999966 779999988865 47789999999996 79999
Q ss_pred ECCCC
Q 047682 1061 VGPLG 1065 (1425)
Q Consensus 1061 ~G~~~ 1065 (1425)
.||..
T Consensus 218 ~G~~~ 222 (237)
T COG0410 218 SGTAA 222 (237)
T ss_pred ecCHH
Confidence 99964
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.61 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=180.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 378899887663 2469999999999999999999999999999999999765 3479999999875
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 906 KQE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 906 ~~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
... ..++.++|++|+..+++.+||.||+.+...... ..+.+..++.+.++++.++|.+..+.. +..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 421 134568999999988999999999987543211 123334445678899999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999986 688
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 898875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=330.62 Aligned_cols=208 Identities=33% Similarity=0.496 Sum_probs=173.9
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 4667776652 246999999999999 999999999999999999999765 358999999987543
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 908 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 908 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
...++.++|++|++.+++.+||.||+.+....+ ..+.++.++.++++++.++|.+..+.. +..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHH
Confidence 234567899999999999999999998865443 122333445678999999998776665 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |+++..|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999976 599999999986 46778999999997 5766654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=336.85 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 45999999999999999999999999999999999999988 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++....+... .... . ... ...+....++++++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~---~---~~~-----------~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA---R---ARR-----------EEREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc---c---ccc-----------cHHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999998754321100 0000 0 000 00112234677899999987666554
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++ .++ +|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGI-TVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC-EEEEEecCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999865 344 455578888899999999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=331.00 Aligned_cols=200 Identities=30% Similarity=0.444 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35999999999999999999999999999999999999998 9999999998754332 3579999999888889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.++.+..+.. . .+....++.+++.+||++..+..++ .
T Consensus 90 ~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------K------------------------DEIDERVREVAELLQIEHLLDRKPK-----Q 130 (213)
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHHhCChh-----h
Confidence 99998864332110 0 0112345678899999877776654 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| ++.++|+..++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTT-TIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644444 55567888899999999999999999
Q ss_pred EEec
Q 047682 373 VFQG 376 (1425)
Q Consensus 373 v~~G 376 (1425)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=335.49 Aligned_cols=205 Identities=22% Similarity=0.378 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 45999999999999999999999999999999999999998 9999999998754332 2469999999989999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------K------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 99999998864321100 0 011224567889999987766655
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+ . +++++.++|+..++.+++|+|++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 45999999999999999999999999999999999999999999999865 3 44555578888899999999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999987763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=334.87 Aligned_cols=205 Identities=28% Similarity=0.392 Sum_probs=172.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDVHIG 208 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 208 (1425)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999998 9999999998765321 357999999998888
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.+|++||+.++....+.. . ......++..++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------K------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 999999998864322110 0 011223567889999987766554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELG-LTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865434 455557788888999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=341.58 Aligned_cols=215 Identities=21% Similarity=0.343 Sum_probs=175.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC-CCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 210 (1425)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++|++|++ ..++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 5899999999999999999999999999999999999998 9999999998865332 35799999986 367788
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.|+.+..+.. ..+....++++++.+||++..+..+
T Consensus 98 tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIP----------------------------------HEEMKERVNEALELVGMQDFKEREP----- 138 (279)
T ss_pred cHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 9999999864322110 0111234677899999987666555
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.| |+.++|+.+++ ..+|+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-ilivtH~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMT-VISITHDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEECC
Confidence 4599999999999999999999999999999999999999999999987644444 44467777777 589999999999
Q ss_pred eEEEecChhHHHH---HHHhCCCCCC
Q 047682 371 QIVFQGPREHVLE---FFKSMGFECP 393 (1425)
Q Consensus 371 ~iv~~G~~~~~~~---~F~~~G~~~p 393 (1425)
+++..|+++++.+ .++..|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 217 QVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred EEEEECCHHHHHcChHHHHHcCCCCc
Confidence 9999999988753 2344455544
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=344.70 Aligned_cols=218 Identities=25% Similarity=0.300 Sum_probs=179.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988874210 012459999999999999999999999999999999999765 34799999998763
Q ss_pred c-------ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 047682 907 Q-------ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVS 977 (1425)
Q Consensus 907 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 977 (1425)
. ..+++.+|||+|++. .+...||+||+.|..... ..+.++.++.++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999862 233579999999875422 234445556789999999996 555654 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+||+++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999987 57889999999986 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 88999975
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=347.85 Aligned_cols=205 Identities=27% Similarity=0.397 Sum_probs=176.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+.++..+... .+...+++.+++.+||++..++.++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG----- 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----
Confidence 9999998765432100 0112346778999999988876664
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+++|++++|||||+|||+.++..+++.|+++.. + ++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--D-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999843 4 556667899999999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=330.84 Aligned_cols=205 Identities=24% Similarity=0.349 Sum_probs=172.4
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4667776652 2469999999999999999999999999999999999765 347999999987531
Q ss_pred -----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 908 -----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 908 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
..+++.++|++|++.+++.+|++||+.+..... ...+.++.++.++++++.+++.+..+.. +..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAY-----PAQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHH
Confidence 234567999999999999999999998764211 1223344456678999999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999986 577889999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=319.46 Aligned_cols=207 Identities=28% Similarity=0.383 Sum_probs=180.2
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCCCCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE----TFARISGYCEQNDIHSP 925 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 925 (1425)
+...+++|||+++++||++||+||||||||||+|+|+|..++ ..|+|.++|.++... ..+..++--+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 356799999999999999999999999999999999998763 589999999986532 23456788999999999
Q ss_pred CCCHHHHHHHHhhcc--------CCCC-CCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhC
Q 047682 926 NVTVYESLLYSAWLR--------LPPD-VDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 996 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr--------~~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~ 996 (1425)
++||.||+..++..+ .+.. ...++..++..++|+.+||.+.+|...| +||+||||||.|||||+++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 999999999875533 1111 1345556778999999999999999865 6999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 997 p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|++|+||||.+||.+..+..+.+.|+++.+. |.||+++-|+.+. ++.+||||++|+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 9999999999999999999999999999874 6999999999984 9999999999996 7889999874
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=338.77 Aligned_cols=203 Identities=24% Similarity=0.299 Sum_probs=170.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCC-CCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDV-HIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 210 (1425)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5999999999999999999999999999999999999998 9999999998765432 357999999852 56678
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.|+....+.. ..+....++.+++.+||.+..++.+.
T Consensus 96 tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~---- 137 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------------------------------KDEVERRVEEALKAVRMWDFRDKPPY---- 137 (274)
T ss_pred cHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCChh----
Confidence 9999999864321110 00112346778999999877766554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+.+++.++||+|++|++|
T Consensus 138 -~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 138 -HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QG-KTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999865 34 45555788888899999999999999
Q ss_pred eEEEecChhHH
Q 047682 371 QIVFQGPREHV 381 (1425)
Q Consensus 371 ~iv~~G~~~~~ 381 (1425)
+++++|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=335.73 Aligned_cols=214 Identities=28% Similarity=0.383 Sum_probs=180.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887652 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 Q----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ...++.++|++|++.+++.+||.||+.+...++. ..+.++.+..++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1234579999999998999999999987643321 223334456688999999998766554 4579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 58889999999986 6788888
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.15 Aligned_cols=200 Identities=29% Similarity=0.396 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999988 9999999988753 246799999998888889999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.++....+.. . ......++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVP----------K------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 9999865432110 0 001224567889999987666555 459
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc--CCe
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS--EGQ 371 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~--~G~ 371 (1425)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+. +|+.++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~-tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGK-TVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC-EEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999998654344 45557888888999999999999 799
Q ss_pred EEEecCh
Q 047682 372 IVFQGPR 378 (1425)
Q Consensus 372 iv~~G~~ 378 (1425)
+++.++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=344.66 Aligned_cols=218 Identities=24% Similarity=0.316 Sum_probs=179.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++... .....+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 67889988874110 0113599999999999999999999999999999999997653 4799999876531
Q ss_pred ---------------------------cccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 047682 907 ---------------------------QETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIM 958 (1425)
Q Consensus 907 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l 958 (1425)
....++.+|||+|++ ..+...||+|++.|..... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3344579999998865432 344555667789999
Q ss_pred HHcCCc-cccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 047682 959 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037 (1425)
Q Consensus 959 ~~l~l~-~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1037 (1425)
+.+||. +..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566655 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1038 PSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1038 ~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+. ++.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 57889999999987 688999986
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=332.98 Aligned_cols=217 Identities=24% Similarity=0.280 Sum_probs=171.7
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. .....+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5677887766310 011369999999999999999999999999999999999765 35799999998754
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 047682 907 Q------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVS 977 (1425)
Q Consensus 907 ~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 977 (1425)
. ..+++.++|++|++ .+.+.+||+||+.+......+ ....+..+..++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 466789999999876543321 111112222235788999985 455554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999865 899999999986 56778999999996 5
Q ss_pred EEEEEC
Q 047682 1057 YEIYVG 1062 (1425)
Q Consensus 1057 ~~~y~G 1062 (1425)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 766554
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=353.16 Aligned_cols=207 Identities=22% Similarity=0.328 Sum_probs=176.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHDV 205 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 205 (1425)
...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999998 9999999998865432 247999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+++.+||+||+.++.+..+... .+....++++++.+||++..++.+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999998765332100 011224567899999987766554
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..++ +|+.++|+.+++.+++|+|+
T Consensus 163 -----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~-TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 163 -----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR-TIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCC-eEEEEECCHHHHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999998654444 45557888999999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988774
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=308.06 Aligned_cols=207 Identities=29% Similarity=0.460 Sum_probs=175.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc---ceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 210 (1425)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||++++.+.+. +.-+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999998 99999999999887653 5678999998888888
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+|-+.++..-.+.+.. | .+....++..|...++.+.+.+ ..
T Consensus 91 tv~eVV~mGr~p~~~g~~-----------------~---------------~e~~~i~~~ala~~d~~~la~R-----~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE-----------------P---------------EEDERIAAQALAATDLSGLAGR-----DY 133 (259)
T ss_pred EHHHHHHhcccccccCCC-----------------c---------------hhhHHHHHHHHHHcChhhhhcc-----ch
Confidence 999999998643322110 0 0123346677888888877654 34
Q ss_pred ccCChhhhhhHHHHHHHhc------CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 291 RGISGGQRKRVTTGEMLVG------PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~------~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+.|||||||||-+||.|+. ++++||||||||.||......+++..|++++. +..|+.+.|+..-...+||+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhhee
Confidence 5799999999999999974 44599999999999999999999999999984 355666789999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|.+||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999886
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=336.96 Aligned_cols=214 Identities=21% Similarity=0.266 Sum_probs=180.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 378889887763 2469999999999999999999999999999999999765 3479999999765
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 047682 906 KQ----------------ETFARISGYCEQNDIHSPNVTVYESLLYSAW-LRLPPDVDSETRRMFLEEIMELVELNPLR- 967 (1425)
Q Consensus 906 ~~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~- 967 (1425)
.. ..+++.++|++|++.+++.+||+||+.+... .. .....+.++.+.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1335679999999999999999999987542 21 123444556788999999997653
Q ss_pred ccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 047682 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1425)
Q Consensus 968 ~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD 1047 (1425)
+.. ...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 443 4579999999999999999999999999999999999999999999999877999999999986 5777899
Q ss_pred EEEEEeCCcEEEEECCC
Q 047682 1048 ELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1048 ~v~~l~~Gg~~~y~G~~ 1064 (1425)
++++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999997 678888875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=330.47 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=173.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ .++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56778877662 12469999999999999999999999999999999999765 35899999998653
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
.. .+++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..+.. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 13567899999998889999999998865433 223344445678899999998766655 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++|
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDG 213 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999877899999999986 577789999999974
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=343.97 Aligned_cols=204 Identities=23% Similarity=0.337 Sum_probs=169.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC------------------------
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE------------------------ 190 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------------------------ 190 (1425)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeccccccccccccccccccccccccccc
Confidence 5899999999999999999999999999999999999998 9999999876421
Q ss_pred ---CCccceEEEEccCC-CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhH
Q 047682 191 ---FVPQRTAAYISQHD-VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASV 266 (1425)
Q Consensus 191 ---~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1425)
...++.++||+|++ ..++..||+||+.|+....+.. ..+...
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~ 143 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAKK 143 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHHH
Confidence 01246799999984 4556789999999875432210 011223
Q ss_pred HHHHHHHHhCCc-ccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCE
Q 047682 267 VTDYVIKVLGLD-VCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGT 345 (1425)
Q Consensus 267 ~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t 345 (1425)
+++++++.+||+ +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . ++
T Consensus 144 ~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~ 216 (305)
T PRK13651 144 RAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-GK 216 (305)
T ss_pred HHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CC
Confidence 467789999996 455544 456999999999999999999999999999999999999999999999864 3 44
Q ss_pred EEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHH
Q 047682 346 AVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 346 ~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 382 (1425)
+|+.++|+.+++.+.||+|++|++|+++++|+++++.
T Consensus 217 tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5666789999999999999999999999999998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=331.30 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=164.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS--PNVTV 929 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv 929 (1425)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999765 34799999997653 2456789999998663 34899
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 047682 930 YESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008 (1425)
Q Consensus 930 ~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsg 1008 (1425)
+||+.+....+.. .....+..++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 0011223345688999999998776665 347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 1009 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877999999999986 57788999999985 4 46654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=344.88 Aligned_cols=217 Identities=19% Similarity=0.373 Sum_probs=174.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-------------------Ccc
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-------------------VPQ 194 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 194 (1425)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999998 99999999887542 124
Q ss_pred ceEEEEccCC-CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH
Q 047682 195 RTAAYISQHD-VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIK 273 (1425)
Q Consensus 195 ~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 273 (1425)
+.++||+|++ ..+...||+||+.|+....+.. ..+...+++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK----------------------------------KSEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 6799999985 2344569999999864321100 0011234567889
Q ss_pred HhCCc-ccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEec
Q 047682 274 VLGLD-VCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352 (1425)
Q Consensus 274 ~lgL~-~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q 352 (1425)
.+||+ ...++ .+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|
T Consensus 162 ~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 34443 3456999999999999999999999999999999999999999999998864 3 445556788
Q ss_pred ChhhHHhhcCeEEEEcCCeEEEecChhHHHH---HHHhCCCCCCC
Q 047682 353 PAPETYDLFDDIILISEGQIVFQGPREHVLE---FFKSMGFECPK 394 (1425)
Q Consensus 353 ~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~---~F~~~G~~~p~ 394 (1425)
+.+++.+.||+|++|++|++++.|+++++.+ .++..|+.+|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 8888999999999999999999999988742 34445555544
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=346.03 Aligned_cols=218 Identities=23% Similarity=0.333 Sum_probs=179.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. ....+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 48999999887421 0012359999999999999999999999999999999999865 3479999999765
Q ss_pred Cc-------------------ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc
Q 047682 906 KQ-------------------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN 964 (1425)
Q Consensus 906 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~ 964 (1425)
.. ...++.+|||+|++ .+++ .||+||+.|..... +.+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3554 59999998864321 234444556788999999996
Q ss_pred -cccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 047682 965 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1043 (1425)
Q Consensus 965 -~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1043 (1425)
+..+.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455544 4579999999999999999999999999999999999999999999999877999999999986 477
Q ss_pred HhcCEEEEEeCCcEEEEECCC
Q 047682 1044 EAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1044 ~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999997 688999985
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=332.59 Aligned_cols=212 Identities=27% Similarity=0.404 Sum_probs=176.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 45677777652 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 907 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
. ....+.++|++|++.+++.+|++||+.+.+..+ ....+...+.++++++.+||.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122356899999998888999999998765432 2233344556788999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 35 45999999987 67788887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=352.41 Aligned_cols=209 Identities=26% Similarity=0.433 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.+... ++.++||+|+..+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999998 9999999998876432 46799999998888999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++..-.. .++.. . ..+...+++++++.+||.+..++.+
T Consensus 93 tv~e~v~~~~~~~~--~~~~~---~-------------------------~~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR--SRFDT---W-------------------------TETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc--ccccC---C-------------------------CHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999998642110 00000 0 0011335678999999988777655
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.|||||||||.|||||+++|++|+|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+.+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 45999999999999999999999999999999999999999999999975 34 45666789999999999999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
++++.|++++++
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=342.59 Aligned_cols=218 Identities=25% Similarity=0.333 Sum_probs=180.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 5788888887410 0011359999999999999999999999999999999999765 35899999998753
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 047682 907 Q-------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGV 976 (1425)
Q Consensus 907 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 976 (1425)
. ...++.+||++|++ .++ ..||.|++.|..... ..+.++.++++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23456799999986 344 469999999875432 234555667789999999996 455544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+|++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57788999999996 6
Q ss_pred EEEEECCCC
Q 047682 1057 YEIYVGPLG 1065 (1425)
Q Consensus 1057 ~~~y~G~~~ 1065 (1425)
++++.|+..
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 889999863
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=330.23 Aligned_cols=193 Identities=26% Similarity=0.383 Sum_probs=163.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCC-CCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDI-HSPNV 927 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 927 (1425)
+.+|+|+|+++++|++++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999765 357999999986532 234567899999974 36678
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
|++||+.+....+ .......++.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765322 123333445678899999998766665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 577789999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=334.71 Aligned_cols=214 Identities=24% Similarity=0.305 Sum_probs=177.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcCc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISGY 903 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g~ 903 (1425)
++++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788877663 235999999999999999999999999999999999976431 12799999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCCC
Q 047682 904 PKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN----PLRQSLVGLP 974 (1425)
Q Consensus 904 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~~ 974 (1425)
+... ...++.++|++|+..+++ .|++||+.+....+. ..+..+.++.++++++.++|. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7542 234567999999998888 999999988654331 123344456688999999997 444443
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999876 589999999986 57788999999997
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 678888875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=337.16 Aligned_cols=207 Identities=20% Similarity=0.349 Sum_probs=172.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35899999999999999999999999999999999999998 999999999876432 135699999998888
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||.||+.++...... + .. ......++.+++.+||++..++.++
T Consensus 97 ~~~tv~enl~~~~~~~~~---~------~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~- 142 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---L------PA------------------------PLLHSTVMMKLEAVGLRGAAKLMPS- 142 (269)
T ss_pred CCCCHHHHHHHHHHHccC---C------CH------------------------HHHHHHHHHHHHHcCChhhhhCChh-
Confidence 899999999885321100 0 00 0012235667899999887776554
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|+|++|
T Consensus 143 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 143 ----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG-VTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhhCEEEEE
Confidence 5999999999999999999999999999999999999999999999865434 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=341.24 Aligned_cols=216 Identities=26% Similarity=0.382 Sum_probs=181.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 478999988773 12469999999999999999999999999999999999765 3589999999875
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 906 KQ-----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 906 ~~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
.. ..+++.+||++|++. .+...||+||+.+..... +.+.++.++.++++++.++|.+..+.. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 234567999999874 234679999998764322 234444556789999999998877765 4579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
|||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999986 46778999999997 688
Q ss_pred EEECCCC
Q 047682 1059 IYVGPLG 1065 (1425)
Q Consensus 1059 ~y~G~~~ 1065 (1425)
++.|+..
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999863
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=335.78 Aligned_cols=206 Identities=22% Similarity=0.259 Sum_probs=175.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999988763 2469999999999999999999999999999999999765 3479999998764
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 245678999999998898999999987421 1 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 57788999999997 678887764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.01 Aligned_cols=218 Identities=20% Similarity=0.313 Sum_probs=179.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|..+ +..|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37788988887411 0012459999999999999999999999999999999999765 3479999999875
Q ss_pred Cc-------ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCC
Q 047682 906 KQ-------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPG 975 (1425)
Q Consensus 906 ~~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~ 975 (1425)
.. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++.++.++++++.+||. +..+..
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 13466799999986 3444 59999998865322 234455566788999999996 566654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999975 4899999999986 57789999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 688899875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=349.34 Aligned_cols=209 Identities=24% Similarity=0.311 Sum_probs=176.8
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCc----cCCCCCc-------cceEEE
Q 047682 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH----NMDEFVP-------QRTAAY 199 (1425)
Q Consensus 131 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~y 199 (1425)
.+...+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+ ++..... ++.++|
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 34567999999999999999999999999999999999999998 999999996 3333211 247999
Q ss_pred EccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc
Q 047682 200 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV 279 (1425)
Q Consensus 200 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 279 (1425)
|+|+..+++.+||+||+.++....+... .+....++++++.+||++
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQ 156 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCch
Confidence 9999999999999999999754332110 011234677899999988
Q ss_pred cccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHh
Q 047682 280 CADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD 359 (1425)
Q Consensus 280 ~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~ 359 (1425)
..|..++ .|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+ ++|+.++|+.+++.+
T Consensus 157 ~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~-~TII~iTHdl~e~~~ 230 (382)
T TIGR03415 157 WADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN-KTIIFVSHDLDEALK 230 (382)
T ss_pred hhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHH
Confidence 7776554 5999999999999999999999999999999999999999999999876444 455557899999999
Q ss_pred hcCeEEEEcCCeEEEecChhHHH
Q 047682 360 LFDDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 360 ~~D~vilL~~G~iv~~G~~~~~~ 382 (1425)
++|+|++|++|+++..|+++++.
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.46 Aligned_cols=203 Identities=28% Similarity=0.422 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999998 999999999875421 2457999999988888999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+..+..+... .+....++++++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999998654322100 0012235678899999877776654
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++++.++|+.+++.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999854 4 455657888888889999999999999
Q ss_pred EEEecChhHH
Q 047682 372 IVFQGPREHV 381 (1425)
Q Consensus 372 iv~~G~~~~~ 381 (1425)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.05 Aligned_cols=203 Identities=24% Similarity=0.405 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999999998 9999999988765432 3569999999889999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL-GLDVCADTMVGDE 288 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~ 288 (1425)
+||+||+.++....+ . . +....++.+++.+ ++++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~----------~------------------------~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--R----------A------------------------KRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--c----------h------------------------hHHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999998643211 0 0 0011234456666 4665555544
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ . +++++.++|+..++.+++|+|++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEee
Confidence 45999999999999999999999999999999999999999999999865 3 4555557888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=334.68 Aligned_cols=214 Identities=27% Similarity=0.370 Sum_probs=172.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999988 999999999876543 135799999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++..... ....... +. . .......++.+++.+||.+..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~~~~~---------~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STWRSLF---------GL-F--------------PKEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhhhhhc---------cc-C--------------cHHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987532110 0000000 00 0 0011234567889999987666544
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+. +|+.++|+.+++.+++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGI-TVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998754344 4555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=324.99 Aligned_cols=223 Identities=25% Similarity=0.362 Sum_probs=195.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHD 204 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 204 (1425)
+...-++|+|++|+.||+..|+|-||||||||+++|.++.+|+ +|+|.++|.++..... ++++++|+|+.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 3455789999999999999999999999999999999999999 9999999998876543 36799999999
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.++|..||.||..|+.+.+|.+. ++.+.+..+.|+..||+..++..
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~----------------------------------~er~~~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPK----------------------------------AEREERALEALELVGLEGYADKY 161 (386)
T ss_pred ccccchhHhhhhhcceeecCCCH----------------------------------HHHHHHHHHHHHHcCchhhhhcC
Confidence 99999999999999999887642 12344567889999999988765
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+ ++||||+||||.|||||+.+|+||+||||+|+|||--+.++.+.|.++.+.+++|+|. ++|+.+|.+++.|||
T Consensus 162 p-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF-itHDLdEAlriG~rI 235 (386)
T COG4175 162 P-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF-ITHDLDEALRIGDRI 235 (386)
T ss_pred c-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEE-EecCHHHHHhccceE
Confidence 5 5699999999999999999999999999999999999999999999998877666555 899999999999999
Q ss_pred EEEcCCeEEEecChhHHHHHHHhCCCCCCCCCCHHHHHHhh
Q 047682 365 ILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~~v 405 (1425)
.+|.+|+||..|+++|++. .|.+.-+++|...+
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 9999999999999999974 46666667776654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=329.46 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=166.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 206 (1425)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999988 9999999998865432 2569999999888
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.+.....+.. . .+.+.+++++++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------P------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 88999999999864321100 0 011234567899999987666554
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG-TAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh-hCEEEE
Confidence 45999999999999999999999999999999999999999999999865434 445556777777665 589999
Q ss_pred EcCCeEEEecCh
Q 047682 367 ISEGQIVFQGPR 378 (1425)
Q Consensus 367 L~~G~iv~~G~~ 378 (1425)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=328.97 Aligned_cols=198 Identities=25% Similarity=0.377 Sum_probs=167.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 45999999999999999999999999999999999999998 9999999987754 2356799999998888899999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.+..+..+... .+....++++++.+||++..++.+ +.|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99988644321100 011224567889999987776654 459
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 373 (1425)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ .+|+.++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AG-KTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 34 45565788888899999999999999998
Q ss_pred Eec
Q 047682 374 FQG 376 (1425)
Q Consensus 374 ~~G 376 (1425)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=328.23 Aligned_cols=197 Identities=24% Similarity=0.360 Sum_probs=170.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 469999999999999999999999999999999999765 35899999998754322 256899999998899999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
|+.+....+. .+ ++.+.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654331 11 13467889999998877665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1012 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|++.
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999877999999999986 57789999999986 6888999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=333.16 Aligned_cols=212 Identities=21% Similarity=0.325 Sum_probs=176.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 378889887663 2469999999999999999999999999999999999765 3579999999875
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCccccccccCCCCCCcCC
Q 047682 906 KQE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 906 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lS 980 (1425)
... ..++.++|++|+..+++.+||.||+.+..... ..+..++.++++++.+ ++.+..+.. ...||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23567999999999999999999998754221 1122334467777777 466555543 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 58899999999997 68899
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9986
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=333.83 Aligned_cols=206 Identities=26% Similarity=0.418 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999998 9999999998764332 35799999999899999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc--cccccccCc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV--CADTMVGDE 288 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~ 288 (1425)
||+||+.++.+..+.. . .+....++++++.+||+. ..++.
T Consensus 91 tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~l~l~~~~~~~~~---- 132 (242)
T cd03295 91 TVEENIALVPKLLKWP----------K------------------------EKIRERADELLALVGLDPAEFADRY---- 132 (242)
T ss_pred cHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCCcHHHHhcC----
Confidence 9999999864322110 0 011224567889999985 44444
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.+++|+|++|+
T Consensus 133 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 133 -PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 456999999999999999999999999999999999999999999999876434 455557788888999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=332.81 Aligned_cols=214 Identities=24% Similarity=0.321 Sum_probs=179.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 367888887763 2469999999999999999999999999999999999765 3579999999864
Q ss_pred C---------cccccceEEEeecCCCCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 047682 906 K---------QETFARISGYCEQNDIHSPNVTVYESLLYS-AWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG 975 (1425)
Q Consensus 906 ~---------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~-~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 975 (1425)
. ....++.++|++|++.+++.+|+.||+.+. .... .....+..+.+.++++.+|+.+..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 138 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF----- 138 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----
Confidence 2 012345789999999999999999999643 2221 122333455688999999998777765
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++
T Consensus 139 ~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 57788999999996
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 217 g~i~~~~~~ 225 (242)
T PRK11124 217 GHIVEQGDA 225 (242)
T ss_pred CEEEEeCCH
Confidence 688898875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=362.10 Aligned_cols=215 Identities=27% Similarity=0.418 Sum_probs=181.7
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+||++.|+.. ++.++|+|+||+|+|||.+||+||||+||||+.++|-+... +.+|+|.+||+|
T Consensus 464 G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 479999999999753 45689999999999999999999999999999999998765 458999999999
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH-----HHHHHHcCCccccccccCCCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFL-----EEIMELVELNPLRQSLVGLPGV 976 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v-----~~~l~~l~l~~~~~~~~g~~~~ 976 (1425)
+++ ..+++.+|+|.|+|.+|. -||+||+.|+.. +.+.++..... .+.+ .++.+-.|+.||..|.
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKGS 603 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCccc
Confidence 765 456789999999999986 499999999753 34444432221 2222 2556678899997654
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++|||||++||+||+|||+||.||+++...|.++|.++.+ ++|||++.|+.| ..+.+|+|+++++ |
T Consensus 604 -qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G 678 (716)
T KOG0058|consen 604 -QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-G 678 (716)
T ss_pred -cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-C
Confidence 6999999999999999999999999999999999999999999988875 699999999985 6788999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|.-
T Consensus 679 ~V~E~G~h 686 (716)
T KOG0058|consen 679 RVVEMGTH 686 (716)
T ss_pred eEEecccH
Confidence 88998853
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=340.50 Aligned_cols=216 Identities=23% Similarity=0.316 Sum_probs=181.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. ...+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788899887741 012359999999999999999999999999999999999765 3589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 234567999999973 677889999998865322 2345555667899999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 35 67999999986 68888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=328.84 Aligned_cols=210 Identities=25% Similarity=0.330 Sum_probs=171.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. ...+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4677887766310 112469999999999999999999999999999999999765 35899999998753
Q ss_pred cc---c---cc-ceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 907 QE---T---FA-RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~~---~---~~-~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
.. . ++ +.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+++.+..+.. +..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 21 1 22 56899999998888999999998865433 122333345678899999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+ +.+|++++|++| ++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G-~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDG-QL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCC-Ee
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 557999999974 54
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=307.38 Aligned_cols=214 Identities=28% Similarity=0.415 Sum_probs=181.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++.+|++|+.. .+.+|++||++++|||++||+|||||||||||+.|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 56688888763 45799999999999999999999999999999999997653 4799999999865
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDV--DSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
. ....+..+.++|+..+....||+|-+.++. .|... ..++..+..+++|...++.+++... ...|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCc
Confidence 4 344567799999998877789999999874 33322 2224455688999999999988765 357999
Q ss_pred HHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 982 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 982 GqrqRl~ia~~L~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||||||.+||.|+. ++++||||||||.||..-+..++++.|+++++|..|+|+.||.+. ...++|||++|++
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~- 216 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ- 216 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-
Confidence 99999999999975 456999999999999999999999999999999999999999985 6788999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|+++..|++.
T Consensus 217 Grv~a~g~p~ 226 (259)
T COG4559 217 GRVIASGSPQ 226 (259)
T ss_pred CeEeecCCHH
Confidence 7999999874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=335.43 Aligned_cols=218 Identities=22% Similarity=0.266 Sum_probs=179.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 377888887662 2469999999999999999999999999999999999765 3589999999875
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHhhccCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 047682 906 KQE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLP----------P--DVDSETRRMFLEEIMELVELNPLRQS 969 (1425)
Q Consensus 906 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~----------~--~~~~~~~~~~v~~~l~~l~l~~~~~~ 969 (1425)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233589999999999999999999886431110 0 00112233567888999999877666
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCE
Q 047682 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 970 ~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 3579999999999999999999999999999999999999999999999875 899999999986 57788999
Q ss_pred EEEEeCCcEEEEECCCC
Q 047682 1049 LFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1049 v~~l~~Gg~~~y~G~~~ 1065 (1425)
+++|++ |++++.|+..
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999996 6788888863
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=338.95 Aligned_cols=213 Identities=23% Similarity=0.319 Sum_probs=178.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|||++|++||++||+|||||||||||++|+|..+ +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56778777652 12359999999999999999999999999999999999765 35899999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 907 Q----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ~----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
. ...++.+||++|++. .+...|+.||+.+..... ..+..+.++.++++++.++|.+..+.. +..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCH
Confidence 2 234567999999975 366789999998765322 234444556788999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 67999999997 678899
Q ss_pred CCC
Q 047682 1062 GPL 1064 (1425)
Q Consensus 1062 G~~ 1064 (1425)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=331.35 Aligned_cols=205 Identities=20% Similarity=0.328 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-----ccceEEEEccCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-----PQRTAAYISQHDVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 208 (1425)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 45999999999999999999999999999999999999998 999999999876421 2457999999988888
Q ss_pred CCCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 209 EMTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
.+||+||+.++... .+. .. .+....++++++.+||+...+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGA----------SK------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 99999999885321 110 00 011224567889999987666554
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.+ .+ ++++.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999864 34 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=334.61 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=178.5
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678877663 2469999999999999999999999999999999999765 358999999986531
Q ss_pred ----------------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 047682 908 ----------------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971 (1425)
Q Consensus 908 ----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 971 (1425)
...++.++|++|++.+++..|+.||+.+..... ........++.++++++.+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 123567999999999999999999998753211 1223444456688999999998776654
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEE
Q 047682 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1050 (1425)
Q Consensus 972 g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~ 1050 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++...+|+++
T Consensus 144 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 144 ----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred ----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 4579999999999999999999999999999999999999999999998765 899999999986 5778899999
Q ss_pred EEeCCcEEEEECCC
Q 047682 1051 LMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1051 ~l~~Gg~~~y~G~~ 1064 (1425)
+|++ |++++.|+.
T Consensus 219 ~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 219 FFDK-GRIVEQGKP 231 (252)
T ss_pred EEEC-CEEEEeCCH
Confidence 9997 678888875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.20 Aligned_cols=204 Identities=22% Similarity=0.339 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCcccEEEECCccCCCCC-----ccceEEEEccC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL-----DPSLKLSGRVTYNGHNMDEFV-----PQRTAAYISQH 203 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 203 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 35999999999999999999999999999999999999 777 999999999875432 24679999998
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
+.++ .+||+||+.++.+..+... . .+....++++++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL----------K-----------------------EELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc----------H-----------------------HHHHHHHHHHHHHcCCChHHhc
Confidence 8777 8999999998654321000 0 0012345678899999876555
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.+. ++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 430 356999999999999999999999999999999999999999999999865 3 5566678888899999999
Q ss_pred EEEEcCCeEEEecChhH
Q 047682 364 IILISEGQIVFQGPREH 380 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~ 380 (1425)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=332.89 Aligned_cols=216 Identities=24% Similarity=0.279 Sum_probs=177.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcCc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISGY 903 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g~ 903 (1425)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887663 246999999999999999999999999999999999975421 35899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc----cccccCCCCC
Q 047682 904 PKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL----RQSLVGLPGV 976 (1425)
Q Consensus 904 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~g~~~~ 976 (1425)
+... ..+++.+||++|++.+++.+||.||+.+....+.. .....+.++.++++++.++|.+. .+.. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7532 23456799999999888999999999886543211 11233445568899999998642 3333 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999864 899999999986 57788999999986 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 78888875
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=334.13 Aligned_cols=214 Identities=25% Similarity=0.288 Sum_probs=176.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+. .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899887652 24699999999999999999999999999999999997542 12589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ..+++.++|++|++.+++ +|++||+.+....+ ..+.+..++.++++++.+++.+ ..+..
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 134567999999988887 89999998865432 2233444456788999998842 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 5778899999998
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 6 688898875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=340.15 Aligned_cols=219 Identities=24% Similarity=0.297 Sum_probs=179.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. ....+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 36788888776310 0012469999999999999999999999999999999999765 3589999999875
Q ss_pred Cc-------ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 047682 906 KQ-------ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGV 976 (1425)
Q Consensus 906 ~~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 976 (1425)
.. ...++.+||++|++. .+..+||.||+.|....+ ....++.+++++++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 123457999999962 233589999998765432 234445556789999999997 566665 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57889999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 78888875
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=346.73 Aligned_cols=208 Identities=27% Similarity=0.412 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++...+. ++.++.++| ..|++..
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q-r~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc-chHHHHH
Confidence 45999999999999999999999999999999999999999 9999999999877655 578999999 5777788
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|+|+||..+. |+.+.|+..+++..-+- +..+ .+.++..||.+|+.+.
T Consensus 427 Tlr~NL~lA~-------------------------~~AsDEel~~aL~qvgL------~~l~--~~~p~gl~t~lge~G~ 473 (573)
T COG4987 427 TLRDNLRLAN-------------------------PDASDEELWAALQQVGL------EKLL--ESAPDGLNTWLGEGGR 473 (573)
T ss_pred HHHHHHhhcC-------------------------CCCCHHHHHHHHHHcCH------HHHH--HhChhhhhchhccCCC
Confidence 9999999863 33333333332211110 1111 1234567899997654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.||||||||++|||+|++++++++|||||.|||+.|+.++++.+.+.++ ++|+++ ++|+... .+.||+|++|++|
T Consensus 474 -~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~-vTHrL~~-le~~drIivl~~G 548 (573)
T COG4987 474 -RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLM-VTHRLRG-LERMDRIIVLDNG 548 (573)
T ss_pred -cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEE-Eeccccc-HhhcCEEEEEECC
Confidence 5999999999999999999999999999999999999999999988654 566665 5666644 4789999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|.+.++++
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999999874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=343.25 Aligned_cols=230 Identities=20% Similarity=0.237 Sum_probs=184.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|++..++............+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 478888887774321000000001235799999999999999999999999999999999997653 479999999876
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 047682 906 KQE------TFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGV 976 (1425)
Q Consensus 906 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 976 (1425)
... .+++.++||+|++ .++|.+||.|++.+...... ...+.++.++.+.++++.++|. +..+.. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 421 2456799999997 57889999999988654321 1245556667788999999994 344444 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..||||||||++||+||+.+|++|++||||+|||..++..+++.|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999986 57788999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|+++..|+..
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 6889999863
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=332.02 Aligned_cols=218 Identities=23% Similarity=0.260 Sum_probs=174.8
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5677777652 246999999999999999999999999999999999973111458999999987542
Q ss_pred c---cc-cceEEEeecCCCCCCCCCHHHHHHHHhhccCCC----CCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCc
Q 047682 908 E---TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP----DVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSG 978 (1425)
Q Consensus 908 ~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~----~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~ 978 (1425)
. .. +..++|++|++.+++.+|++|++.+........ ..+.++..+.++++++.++|. +..+..++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 12 234899999999999999999998764322110 112233345678899999997 35554422 24
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fD~v~~l~~Gg~ 1057 (1425)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+... +|++++|++ |+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877899999999986 46666 799999986 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 223 i~~~g~~ 229 (243)
T TIGR01978 223 IVKSGDV 229 (243)
T ss_pred EEEecCH
Confidence 8888875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=338.54 Aligned_cols=206 Identities=21% Similarity=0.309 Sum_probs=170.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEccCC-C
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYISQHD-V 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 205 (1425)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999998 999999999875421 246799999985 2
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 284 (1425)
.+...||+||+.|+....+.. . .+....++++++.+||. ...++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN----------L------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 334469999999864321110 0 01123466789999996 455544
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 -----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE-NKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999986543 455666788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999988764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=333.07 Aligned_cols=204 Identities=24% Similarity=0.367 Sum_probs=170.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-----------CccceEEEEccC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-----------VPQRTAAYISQH 203 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q~ 203 (1425)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5999999999999999999999999999999999999988 99999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 204 DVHIGEMTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
+.+++.+||+||+.++... .+. . ..+....++.+++.+||+...|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE-P---------------------------------KEEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC-C---------------------------------HHHHHHHHHHHHHHcCCcchhh
Confidence 8888899999999875321 110 0 0011234567888999987666
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D 362 (1425)
+.+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+. +++.++|+.+++.+++|
T Consensus 140 ~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKR-TMVIVTHEMSFARDVAD 212 (250)
T ss_pred CCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCC-EEEEEeCCHHHHHHhcC
Confidence 544 46999999999999999999999999999999999999999999999864 344 45557888889999999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 047682 363 DIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 363 ~vilL~~G~iv~~G~~~~~~ 382 (1425)
++++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=337.58 Aligned_cols=214 Identities=25% Similarity=0.370 Sum_probs=179.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67788887763 12359999999999999999999999999999999999765 35899999998754
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 Q---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ...++.+||++|++. .+...||.||+.+..... ..+.+..++.++++++.++|.+..+..+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999963 344679999998765322 2344455567889999999988777663 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999986 57789999999997 688899
Q ss_pred CCC
Q 047682 1062 GPL 1064 (1425)
Q Consensus 1062 G~~ 1064 (1425)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 986
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=355.30 Aligned_cols=216 Identities=28% Similarity=0.423 Sum_probs=178.2
Q ss_pred cccCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE
Q 047682 821 PFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI 900 (1425)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i 900 (1425)
|.-...++|+|++|.++. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|..+ +..|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 333457999999999852 22369999999999999999999999999999999999876 45899999
Q ss_pred cCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-------cccccc
Q 047682 901 SGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-------PLRQSL 970 (1425)
Q Consensus 901 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~ 970 (1425)
||++..+ ...|+.+|||+||+.++. -|++||+.++. ++.+.++ +.++++..|.. .-.|+.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccccc
Confidence 9998654 567899999999998875 59999998643 3333333 23333333332 234556
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEE
Q 047682 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1050 (1425)
Q Consensus 971 ~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~ 1050 (1425)
+|.. ..+||||||||++|||+|+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++ ..+.+|+++
T Consensus 603 v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 6644 46899999999999999999999999999999999999999999999986 4899999999985 678999999
Q ss_pred EEeCCcEEEEECCC
Q 047682 1051 LMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1051 ~l~~Gg~~~y~G~~ 1064 (1425)
+|++ |+++..|+.
T Consensus 679 Vl~~-Gkiv~~gs~ 691 (709)
T COG2274 679 VLDQ-GKIVEQGSH 691 (709)
T ss_pred EccC-CceeccCCH
Confidence 9986 799999986
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=380.38 Aligned_cols=205 Identities=27% Similarity=0.386 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++.+| +.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cc
Confidence 35899999999999999999999999999999999999998 9999999999987654 57899999976665 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|++|||.++.. .+.+++.+++...+- ++.+ -.+++..||.+|+.+
T Consensus 542 TI~eNi~~~~~--------------------------~~~e~i~~al~~a~l------~~~i--~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 542 SIFENIAGGAP--------------------------LTLDEAWEAARMAGL------AEDI--RAMPMGMHTVISEGG- 586 (686)
T ss_pred cHHHHHhcCCC--------------------------CCHHHHHHHHHHcCc------HHHH--HhccccccccccCCC-
Confidence 99999998632 111122222211110 1111 236778899999875
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.+||||||||++||||++++|++++||||||+||+.++.++.+.|+++ ++|+|+ ++|.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999875 456655 45544 566789999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=326.79 Aligned_cols=192 Identities=26% Similarity=0.334 Sum_probs=161.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCC-CCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDV-HIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 212 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 45999999999999999999999999999999999999998 9999999988754333467999999863 4557899
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.++....+ .....++++++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELD--------------------------------------AGNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcC--------------------------------------ccHHHHHHHHHHcCCchhcCCCch-----h
Confidence 999987542110 001235678899999877776554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+ .+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 34 4455578888889899999999999997
Q ss_pred E
Q 047682 373 V 373 (1425)
Q Consensus 373 v 373 (1425)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=334.52 Aligned_cols=213 Identities=25% Similarity=0.338 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999998 999999998875432 245799999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++..... ..+...... ...+....++++++.+||.+..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWRSLLGR------------------------FSEEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhcccccc--cchhhhhcc------------------------ccHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 99999999987532100 000000000 00011234567889999987666544
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+++.++||++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG-ITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 46999999999999999999999999999999999999999999999865434 45555788888899999999999
Q ss_pred cCCeEEEecChhHH
Q 047682 368 SEGQIVFQGPREHV 381 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~ 381 (1425)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=332.91 Aligned_cols=217 Identities=24% Similarity=0.261 Sum_probs=178.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
-++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 377888888763 246999999999999999999999999999999999976532 2489999999
Q ss_pred ccCC-----cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKK-----QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+.. ...+++.++|++|++.+++.+||.||+.+....+. .....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8753 12345679999999999999999999987654321 11123334456788999998853 22322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5778899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 7 688888875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=333.07 Aligned_cols=215 Identities=22% Similarity=0.241 Sum_probs=175.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
-++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 478999988763 235999999999999999999999999999999999975431 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN----PLRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++ +||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999988774 899999988654321 112333456678888988874 233433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46799999999999999999999999999999999999999999999996 4799999999986 5778899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 6 688888875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=329.65 Aligned_cols=195 Identities=25% Similarity=0.374 Sum_probs=162.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999998 999999999876543 13579999999888
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP----------K------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 99999999999865432110 0 001224567899999987666555
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|+..++. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT-IVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCe-EEEEECCHHHHh-hhcEEEE
Confidence 4599999999999999999999999999999999999999999999986533444 555677777775 9999999
Q ss_pred EcCCeE
Q 047682 367 ISEGQI 372 (1425)
Q Consensus 367 L~~G~i 372 (1425)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=334.06 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=178.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56788887663 2469999999999999999999999999999999999765 35799999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
. ...++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+++.+..+..+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223457899999988888899999998754221 1122233456788999999987777653 5799999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 984 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 984 rqRl~ia~~L~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 66899999999986 57789999999996 6
Q ss_pred EEEEECCCC
Q 047682 1057 YEIYVGPLG 1065 (1425)
Q Consensus 1057 ~~~y~G~~~ 1065 (1425)
++++.|+..
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 788888753
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=336.16 Aligned_cols=216 Identities=25% Similarity=0.389 Sum_probs=175.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 209 (1425)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999998 9999999998865432 35799999986 36778
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
.||+||+.++.+..+.. ..+....++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------------------------------REEMVERVDQALRQVGMEDFLNREPH--- 139 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCcc---
Confidence 89999999864322110 00112346778999999877776654
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++. .+|+|++|++
T Consensus 140 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 140 --RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999987643 445555677777775 5999999999
Q ss_pred CeEEEecChhHHHH---HHHhCCCCCC
Q 047682 370 GQIVFQGPREHVLE---FFKSMGFECP 393 (1425)
Q Consensus 370 G~iv~~G~~~~~~~---~F~~~G~~~p 393 (1425)
|++++.|+.+++.. .+...|..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3334454443
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=336.59 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=171.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC--C---CccceEEEEccCCC-CCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE--F---VPQRTAAYISQHDV-HIG 208 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~~ 208 (1425)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 5999999999999999999999999999999999999998 9999999998742 1 12367999999853 345
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
..||+||+.++....+.. . .+....++++++.+||.+..++.+
T Consensus 97 ~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 139 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLP----------E------------------------DEVRKRVDNALKRTGIEHLKDKPT--- 139 (283)
T ss_pred cccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhCCc---
Confidence 689999998864322110 0 011234677899999987766554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+. +|+.++|+.+++.++||++++|+
T Consensus 140 --~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~-tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 140 --HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL-TIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhCCEEEEEE
Confidence 459999999999999999999999999999999999999999999998764344 55557888889999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=337.61 Aligned_cols=214 Identities=26% Similarity=0.305 Sum_probs=180.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 788898887631 124599999999999999999999999999999999998653 4899999998764
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 Q---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ...++.+||++|++. .++..||.||+.+..... ..+.++.++.++++++.+||.+..+... ..||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 3 234567999999973 667789999998865432 2334455567899999999988777764 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ +.+|++++|++ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 35 46999999996 678899
Q ss_pred CCC
Q 047682 1062 GPL 1064 (1425)
Q Consensus 1062 G~~ 1064 (1425)
|+.
T Consensus 222 g~~ 224 (279)
T PRK13635 222 GTP 224 (279)
T ss_pred CCH
Confidence 985
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=330.38 Aligned_cols=215 Identities=25% Similarity=0.310 Sum_probs=177.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56778877652 2469999999999999999999999999999999999765 34799999998753
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 907 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-----PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.. ..++.++|++|++.+++.+||+||+.+....... .....+..++.++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 21 1234699999999999999999999886432100 0011233445688999999998776665 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999876 799999999986 57788999999997 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=329.73 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc--cceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP--QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 211 (1425)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 45999999999999999999999999999999999999998 9999999988754322 257999999988888999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+.....+.. . .+....++++++.+||+...++.++
T Consensus 91 ~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------R------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 999998754322100 0 0012235678889999877766554
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| ++.++|+.+++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecChhhHh-hCCEEEEEeCCe
Confidence 599999999999999999999999999999999999999999999987543444 555677777775 599999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=340.94 Aligned_cols=214 Identities=22% Similarity=0.263 Sum_probs=176.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCC--
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHD-- 204 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 204 (1425)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|+++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998742238999999998865432 14799999986
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.+.+.+||.+++.+....... .. ..+...++.++++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~------------------------~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MS------------------------KAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CC------------------------HHHHHHHHHHHHHHcCCCChHHH-
Confidence 688999999999875432110 00 01112346678899999764322
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
. ++.+++|||||||||+||+||+.+|+++++||||+|||..++.++.+.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEE
Confidence 2 35667899999999999999999999999999999999999999999999997654 456666889999999999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
++|++|+|++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=324.78 Aligned_cols=194 Identities=26% Similarity=0.332 Sum_probs=163.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLY 935 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~ 935 (1425)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999865 357999999987543 1234679999999999999999999987
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~ 1015 (1425)
....+. .. .+..++.++++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 123345678999999998777765 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 1016 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 1016 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
.+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999998754 899999999986 57788999999997 5666543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=327.16 Aligned_cols=203 Identities=34% Similarity=0.556 Sum_probs=164.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD---PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 569999999999999999999999999999999999998 77 999999999876434457899999999899999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHH-HHHHhCCcccccccccCcc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDY-VIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~ 289 (1425)
||+||+.++......... . . .......+. .++.+++++..++.+
T Consensus 97 tv~enl~~~~~~~~~~~~--------------------~-~----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (226)
T cd03234 97 TVRETLTYTAILRLPRKS--------------------S-D----------AIRKKRVEDVLLRDLALTRIGGNLV---- 141 (226)
T ss_pred cHHHHHHHHHHhhccccc--------------------c-h----------HHHHHHHHHHHHHhhcchhhhcccc----
Confidence 999999987543211000 0 0 000112233 788888876655544
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.+ .+.|++++.|++..++.+++|++++|++
T Consensus 142 -~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 142 -KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred -cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999865 3556655444434689999999999999
Q ss_pred CeEEEec
Q 047682 370 GQIVFQG 376 (1425)
Q Consensus 370 G~iv~~G 376 (1425)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=320.79 Aligned_cols=179 Identities=45% Similarity=0.767 Sum_probs=155.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccEEEECCccCCCCC--ccceEEEEccCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD---PSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHI 207 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~ 207 (1425)
++.+|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccC
Confidence 4569999999999999999999999999999999999998 66 999999999876532 346799999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++++.. .+
T Consensus 96 ~~~tv~~~l~~~~~~~---------------------------------------------------------~~----- 113 (202)
T cd03233 96 PTLTVRETLDFALRCK---------------------------------------------------------GN----- 113 (202)
T ss_pred CCCcHHHHHhhhhhhc---------------------------------------------------------cc-----
Confidence 9999999998753210 11
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.....||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++.+..+.|+++++||+.+++.+.+|++++|
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l 193 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL 193 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence 22346999999999999999999999999999999999999999999999876445677777778788999999999999
Q ss_pred cCCeEEEec
Q 047682 368 SEGQIVFQG 376 (1425)
Q Consensus 368 ~~G~iv~~G 376 (1425)
++|++++.|
T Consensus 194 ~~G~i~~~g 202 (202)
T cd03233 194 YEGRQIYYG 202 (202)
T ss_pred ECCEEEecC
Confidence 999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=342.47 Aligned_cols=208 Identities=22% Similarity=0.261 Sum_probs=174.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCC--C
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHD--V 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 205 (1425)
.++|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999997 9999999998865432 35799999986 5
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 284 (1425)
+++.+||.||+.+..+..... ..+ .+....++++++.+||. ...++
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~--------~~~------------------------~~~~~~~~~~l~~vgl~~~~~~~- 157 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPK--------LSR------------------------QEVKDRVKAMMLKVGLLPNLINR- 157 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccC--------CCH------------------------HHHHHHHHHHHHHcCCChHHhcC-
Confidence 788999999999864322100 000 11223456789999994 34444
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.+..|||||||||+||+||+.+|+++++||||+|||..++.++++.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 158 ----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 158 ----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 455799999999999999999999999999999999999999999999987643 455666899999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=328.91 Aligned_cols=232 Identities=22% Similarity=0.271 Sum_probs=180.7
Q ss_pred EEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 047682 89 RFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 89 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~ 168 (1425)
+.+|++.++.... ..+++.+..++.+ .++.+.+++|+|+|+++++|++++|+|||||||||||++|+
T Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 2 EVSNLSKSYRVYS---KEPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred ceecchhhccCcC---CccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4677777775532 2233333333322 22334567999999999999999999999999999999999
Q ss_pred cCCCCCCCcccEEEECCccCCCC--CccceEEEEc-cCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCC
Q 047682 169 GKLDPSLKLSGRVTYNGHNMDEF--VPQRTAAYIS-QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245 (1425)
Q Consensus 169 G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~ 245 (1425)
|.++|+ +|+|.++|++.... ..++.++|++ |++.+++.+||+|++.+.....+...
T Consensus 69 Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~------------------ 127 (236)
T cd03267 69 GLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP------------------ 127 (236)
T ss_pred CCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH------------------
Confidence 999998 99999999875432 1246799997 54667789999999988644321100
Q ss_pred CCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCCh
Q 047682 246 PDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDS 325 (1425)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~ 325 (1425)
++....++.+++.+||++..++.++ .||||||||++||+||+.+|++++|||||+|||+
T Consensus 128 ----------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 128 ----------------ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred ----------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0112235678889999988887664 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEec
Q 047682 326 STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376 (1425)
Q Consensus 326 ~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G 376 (1425)
.++..+.+.|+++++..+. +|+.++|+.+++.+++|++++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~-tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGT-TVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCC-EEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998654344 4555788888899999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=336.01 Aligned_cols=213 Identities=24% Similarity=0.347 Sum_probs=176.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56778877663 2359999999999999999999999999999999999765 35899999998753
Q ss_pred c-----ccccceEEEeecCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 Q-----ETFARISGYCEQNDIH-SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. ...++.+||++|++.. +...|+.||+.+....+ ....++.++.++++++.+++.+..+.. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1234679999999753 34568999998764332 223344455678899999998777665 45799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999997 67888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=325.66 Aligned_cols=195 Identities=27% Similarity=0.374 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-CccceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-VPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999988 99999999877542 124579999999888989999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.+.....+. ....++++++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 9999886432110 01234667888999877666554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.| ++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-ii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGIT-VLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 3444 55578888889999999999999999
Q ss_pred EEec
Q 047682 373 VFQG 376 (1425)
Q Consensus 373 v~~G 376 (1425)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.07 Aligned_cols=201 Identities=25% Similarity=0.362 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999998 99999999987542 34689999998888889999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.++....+.. . .+....++++++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------K------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 9998864322110 0 011224567889999987666544 459
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc--CCe
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS--EGQ 371 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~--~G~ 371 (1425)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.++||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG-KQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999999865434 445557888889999999999998 599
Q ss_pred EEEecChh
Q 047682 372 IVFQGPRE 379 (1425)
Q Consensus 372 iv~~G~~~ 379 (1425)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99888653
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=319.65 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=162.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-eEEEEEEEcCcc
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKISGYP 904 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~~~G~i~i~g~~ 904 (1425)
.++|+|++|.++.+ .+++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998632 13457999999999999999999999999999999999976522 468999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 905 KKQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 905 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
... ...++.++|++|++.+++.+||+||+.+....+ .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 543 234567999999999999999999998753211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777766654468889999999997 677765
Q ss_pred C
Q 047682 1062 G 1062 (1425)
Q Consensus 1062 G 1062 (1425)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=333.26 Aligned_cols=217 Identities=26% Similarity=0.345 Sum_probs=179.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67788887662 2469999999999999999999999999999999999755 35799999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ...++.++|++|+..+++.+|+.|++.+....... .....+..++.++++++.+++.+..+.. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23445689999999888889999999875311000 0111123345678899999998777765 3579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998877999999999996 58889999999997 6788888
Q ss_pred CCC
Q 047682 1063 PLG 1065 (1425)
Q Consensus 1063 ~~~ 1065 (1425)
+.+
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=327.69 Aligned_cols=198 Identities=31% Similarity=0.468 Sum_probs=166.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCCH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 212 (1425)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999998 999999999875421 24679999999988888999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.+.....+.. ..+....++++++.+||++..+..++ .
T Consensus 96 ~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------------------------------GDELTARLEELADRLGMEELLDRRVG-----G 136 (218)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHHhhhhh-----h
Confidence 99998754322110 00112345678999999877766554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+ .+++.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LG-KCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999854 34 4555578888899999999999999999
Q ss_pred EEec
Q 047682 373 VFQG 376 (1425)
Q Consensus 373 v~~G 376 (1425)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=298.76 Aligned_cols=200 Identities=27% Similarity=0.393 Sum_probs=176.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..+|+|||++|.+||.++++||||||||||||+++|..+ +..|.|.+||.++....- ..|.|+|++.++|-+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 459999999999999999999999999999999999877 458999999998754322 3489999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
|+.|+..++ .+++.++++.+.+.+..+||.+..+.. +-.||||||||+.|||||+.+|+.|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 578889999999999999999887765 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCC-cEEEEECCC
Q 047682 1012 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GYEIYVGPL 1064 (1425)
Q Consensus 1012 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G-g~~~y~G~~ 1064 (1425)
-+++.++++|-++. ++|+.++++||+.. |..-+++++++|+.| |+++.-=|+
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 99999999998876 45999999999986 455577999999843 566665555
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=333.59 Aligned_cols=220 Identities=27% Similarity=0.355 Sum_probs=180.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-eEEEEEEEcCcc
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKISGYP 904 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~~~G~i~i~g~~ 904 (1425)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 377888887663 246999999999999999999999999999999999976532 236999999986
Q ss_pred CCc--------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 047682 905 KKQ--------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-----PDVDSETRRMFLEEIMELVELNPLRQSLV 971 (1425)
Q Consensus 905 ~~~--------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 971 (1425)
... ...++.++|++|++.+++.+||.||+.+......+ .....++.++.++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999999999999999875321100 01112334456889999999987777653
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEE
Q 047682 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1050 (1425)
Q Consensus 972 g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~ 1050 (1425)
..||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|+++ .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999754 899999999986 4788999999
Q ss_pred EEeCCcEEEEECCCC
Q 047682 1051 LMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1051 ~l~~Gg~~~y~G~~~ 1065 (1425)
+|++ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9996 6778988864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=347.86 Aligned_cols=201 Identities=24% Similarity=0.302 Sum_probs=173.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---T----FARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 924 (1425)
..+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... . .++.+||++|+..++
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 468999999999999999999999999999999999765 3479999999875421 1 235799999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDE 1004 (1425)
+.+||+||+.+....+ ....++.++.+.++++.++|.+..+.. +..||||||||++|||+|+.+|++|+|||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999876543 233444556788999999998877765 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1005 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999875 4899999999986 57889999999997 688888875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=322.97 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=180.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCcccEEEECCccCCCCCc-------cceEEEEccC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-P-SLKLSGRVTYNGHNMDEFVP-------QRTAAYISQH 203 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 203 (1425)
..++++||||++++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.+.. .+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4569999999999999999999999999999999999997 4 33467999999998755442 2579999998
Q ss_pred C--CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc
Q 047682 204 D--VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCA 281 (1425)
Q Consensus 204 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 281 (1425)
+ .+-|.+||.+.+.-..+...... ..++...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 4 78899999999876544321000 0112344567889999998643
Q ss_pred cccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhc
Q 047682 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361 (1425)
Q Consensus 282 ~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~ 361 (1425)
. +-+.++.+|||||||||.||.||+.+|++||.|||||+||..++.+|++.|+++.++ .+++++.++|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc
Confidence 2 335778899999999999999999999999999999999999999999999999874 4677777999999999999
Q ss_pred CeEEEEcCCeEEEecChhHHH
Q 047682 362 DDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 362 D~vilL~~G~iv~~G~~~~~~ 382 (1425)
|||+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999884
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=329.35 Aligned_cols=219 Identities=22% Similarity=0.291 Sum_probs=175.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC---CCceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~---~~~~~~G~i~i~g 902 (1425)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477888887663 246999999999999999999999999999999999952 2112479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+++.+....... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988876 699999987654331 11223344567889999998642211111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4899999999997 57789999999986 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 8999975
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.22 Aligned_cols=217 Identities=19% Similarity=0.242 Sum_probs=178.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
.++++|+++.++ .+.+|+|+|++|++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377888888763 246999999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|+..+++.+||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999987654331 1123344556788999998842 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 689999999986 5778999999997
Q ss_pred C-----CcEEEEECCC
Q 047682 1054 R-----GGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~-----Gg~~~y~G~~ 1064 (1425)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4788999875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=336.06 Aligned_cols=218 Identities=23% Similarity=0.324 Sum_probs=176.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. ....+.+|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 36788888876310 0011359999999999999999999999999999999999765 3589999999875
Q ss_pred Cc-------ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCC
Q 047682 906 KQ-------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPG 975 (1425)
Q Consensus 906 ~~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~ 975 (1425)
.. ...++.++|++|++ .+++ .||+||+.+..... ..+.++.++.++++++.++|.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN----- 142 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23456789999986 3444 69999998764322 2233444556788999999963 44544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 4579999999999999999999999999999999999999999999999877999999999986 57788999999996
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 221 G~i~~~g~~ 229 (280)
T PRK13649 221 GKLVLSGKP 229 (280)
T ss_pred CEEEEeCCH
Confidence 678888875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=334.06 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=180.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 588899988773 2469999999999999999999999999999999999765 3479999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ...++.++|++|++.+++..|++|++.+...-..+ .....+..++.++++++.++|.+..+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23345789999999988899999999865211100 0011123345678999999998776665 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999864 899999999986 58899999999986 67889
Q ss_pred ECCCC
Q 047682 1061 VGPLG 1065 (1425)
Q Consensus 1061 ~G~~~ 1065 (1425)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 99864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=330.22 Aligned_cols=194 Identities=22% Similarity=0.295 Sum_probs=165.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999998 9999999987643 2467999999988888899999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.++... . ....++.+++.+||++..+..+ ..||
T Consensus 101 nl~~~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhcccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 99874210 0 0113456788899987666554 4699
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.| |+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-viivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT-VLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999986544445 5557888888899999999999999999
Q ss_pred ecChh
Q 047682 375 QGPRE 379 (1425)
Q Consensus 375 ~G~~~ 379 (1425)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=317.61 Aligned_cols=190 Identities=59% Similarity=0.953 Sum_probs=161.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 36788888877421 012469999999999999999999999999999999999643224589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 344567999999998999999999998643110 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998644678899999998757888875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.89 Aligned_cols=219 Identities=24% Similarity=0.302 Sum_probs=175.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC---CceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~---~~~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|... ..+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 588999988763 2369999999999999999999999999999999999632 113579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+........ .+.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHE-SAL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 87532 133567999999988887 599999988654321 112233345678889999985421111111 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GK 225 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999854 799999999986 57788999999997 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14242 226 LIEVGPT 232 (253)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=339.41 Aligned_cols=214 Identities=20% Similarity=0.228 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCccCCCCCc-------cceEEEEccCC-
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL-KLSGRVTYNGHNMDEFVP-------QRTAAYISQHD- 204 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 204 (1425)
.++|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987421 128999999998865432 13699999986
Q ss_pred -CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 205 -VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 205 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
.+.|.+||.+++....+.... . ...+....++++++.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~------------------------~~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------G------------------------NKKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------C------------------------CHHHHHHHHHHHHHHCCCCChHH-
Confidence 478899999998765432100 0 00112335677899999975221
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
+-++.++.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+..+ ++++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g-~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN-MALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCE
Confidence 11244567999999999999999999999999999999999999999999999976544 4566688999999999999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999998853
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=322.96 Aligned_cols=194 Identities=26% Similarity=0.390 Sum_probs=162.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999999988 999999999876542 235799999998888
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++....+.. ....+..++++++.+||++..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK----------------------------------EREIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCh--
Confidence 8999999999865422100 0011234567889999987666555
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++++.++|+..++.++||++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEe
Confidence 45999999999999999999999999999999999999999999999854 34 45555788888999999999999
Q ss_pred cCCe
Q 047682 368 SEGQ 371 (1425)
Q Consensus 368 ~~G~ 371 (1425)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=327.87 Aligned_cols=203 Identities=24% Similarity=0.372 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 3569999999888988
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL-GLDVCADTMVGDE 288 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~ 288 (1425)
+||+||+.++..... . . +....++.+++.+ ++.+..++.
T Consensus 95 ~tv~~~l~~~~~~~~---~---------~------------------------~~~~~~~~~l~~~~~l~~~~~~~---- 134 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R---------D------------------------QFQERIKWVYELFPRLHERRIQR---- 134 (237)
T ss_pred CcHHHHHHHhhhccC---h---------h------------------------HHHHHHHHHHHHHHHHHHHHhCc----
Confidence 999999987532110 0 0 0011233455555 455444443
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.| ++.++|+.+++.+++|++++|+
T Consensus 135 -~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 135 -AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMT-IFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeCcHHHHHhhCCEEEEEe
Confidence 346999999999999999999999999999999999999999999999865 3445 5557888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988774
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=332.16 Aligned_cols=223 Identities=23% Similarity=0.297 Sum_probs=178.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.....+ ..+++.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67788887763110000 0113579999999999999999999999999999999999765 35899999998754
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 047682 907 QE------TFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVS 977 (1425)
Q Consensus 907 ~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 977 (1425)
.. ..++.++|++|++ .+.+.+||+|++.+..... ........++.++++++.+++. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1345799999996 4667899999997654311 1222334455688999999995 555554 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998865 899999999986 57778999999986 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 88899886
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=325.52 Aligned_cols=212 Identities=27% Similarity=0.394 Sum_probs=178.6
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
.++|+++.++ .+.+++|+|++++||++++|+|+||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 4677777652 24699999999999999999999999999999999997653 47999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 908 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 908 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
. ..++.++|++|+...++.+|+.||+.+....+ ..+....++.++++++.+++.+..+.. +..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 1 23467899999999988999999998765433 123334455678899999998877765 35799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999998764 899999999986 57889999999997 677888864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.43 Aligned_cols=212 Identities=25% Similarity=0.359 Sum_probs=174.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. .....+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47889988776310 011359999999999999999999999999999999999765 3489999999875
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 906 KQET------F-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 906 ~~~~------~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+.++.++++++.+++.+..+.. +..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhh
Confidence 4211 1 246999999998999999999998765432 123344456788999999998776665 347
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 34 56999999997 56
Q ss_pred EE
Q 047682 1058 EI 1059 (1425)
Q Consensus 1058 ~~ 1059 (1425)
++
T Consensus 224 i~ 225 (228)
T PRK10584 224 LQ 225 (228)
T ss_pred EE
Confidence 54
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=333.32 Aligned_cols=218 Identities=28% Similarity=0.373 Sum_probs=179.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478889887662 2469999999999999999999999999999999999765 3579999999765
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ..+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888899999999875321110 00111223456788999999987766653 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57789999999996 67888
Q ss_pred ECCCC
Q 047682 1061 VGPLG 1065 (1425)
Q Consensus 1061 ~G~~~ 1065 (1425)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 88763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=327.21 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=166.6
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999865 35899999998764321 12489999999999999999998
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~ 1014 (1425)
+......+ ..+.++.++.++++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 233344455678999999998777665 357999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1015 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1015 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57888999999997 677877764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=325.02 Aligned_cols=197 Identities=29% Similarity=0.444 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
.++|+|+|+++++| +++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 35999999999999 99999999999999999999999998 999999998875432 2467999999988899999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.+.....+.. + .+....++.+++.+||++..++.++
T Consensus 89 v~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 129 (211)
T cd03264 89 VREFLDYIAWLKGIP----------S------------------------KEVKARVDEVLELVNLGDRAKKKIG----- 129 (211)
T ss_pred HHHHHHHHHHHhCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----
Confidence 999999864432110 0 0112245678899999877776554
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++ + ++++.++|+..++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 4 556667888888989999999999999
Q ss_pred EEEec
Q 047682 372 IVFQG 376 (1425)
Q Consensus 372 iv~~G 376 (1425)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.32 Aligned_cols=196 Identities=23% Similarity=0.351 Sum_probs=161.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------c-ceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------Q-RTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~-~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... + +.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999998 9999999998765432 1 569999999888
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.++....... . .+....++++++.+||++..++.+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------V------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 88999999999864321100 0 011223567889999987666554
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++..+.|+ +.++|+..++. .+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti-i~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF-LVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHh-hcCEEEE
Confidence 45999999999999999999999999999999999999999999999875444554 44667776664 5799999
Q ss_pred EcCCeEE
Q 047682 367 ISEGQIV 373 (1425)
Q Consensus 367 L~~G~iv 373 (1425)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.71 Aligned_cols=214 Identities=29% Similarity=0.351 Sum_probs=177.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56788887663 12359999999999999999999999999999999999765 34799999998753
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 Q-----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. ...++.++|++|++. .+...||.|++.+..... ....++.++.+.++++.++|.+..+.. +..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCC
Confidence 1 123567999999963 334579999998764321 233444556688999999998887776 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999997 68888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=337.49 Aligned_cols=208 Identities=20% Similarity=0.247 Sum_probs=174.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCC--C
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHD--V 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~ 205 (1425)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999987 999999999886543 235799999986 5
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV-CADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~ 284 (1425)
+.+.+||.+++....+.... ..+ .+...++.++++.+||+. ..++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSA------------------------AERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCH------------------------HHHHHHHHHHHHHCCCChHHhcCC
Confidence 88899999999875432210 000 012235678899999963 45544
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 152 -----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 -----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred -----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999987654 455666899999999999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999998853
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=330.47 Aligned_cols=217 Identities=21% Similarity=0.248 Sum_probs=177.5
Q ss_pred CceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-ceEEEEEEE
Q 047682 824 PLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKI 900 (1425)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~-~~~~G~i~i 900 (1425)
...++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 34588999988763 2369999999999999999999999999999999999753 1 135799999
Q ss_pred cCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 047682 901 SGYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLV 971 (1425)
Q Consensus 901 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~ 971 (1425)
+|.+... ...++.++|++|+..+++ .|++||+.+....+. ..+.++.++.++++++.+++.+ ..+..
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9987531 234567999999988877 899999987653221 2333444566889999999843 23332
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE
Q 047682 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051 (1425)
Q Consensus 972 g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~ 1051 (1425)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|++++
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 45799999999999999999999999999999999999999999999996 4789999999986 57788999999
Q ss_pred EeCCcEEEEECCC
Q 047682 1052 MKRGGYEIYVGPL 1064 (1425)
Q Consensus 1052 l~~Gg~~~y~G~~ 1064 (1425)
|++ |+++..|+.
T Consensus 228 l~~-G~i~~~g~~ 239 (260)
T PRK10744 228 MYL-GELIEFGNT 239 (260)
T ss_pred EEC-CEEEEeCCH
Confidence 996 688888875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.22 Aligned_cols=215 Identities=24% Similarity=0.321 Sum_probs=179.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 4788999877631 23469999999999999999999999999999999999765 3479999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ..+++.+||++|++. .++.+||+||+.+..... ..+.++.++.++++++.++|.+..+.. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCH
Confidence 43 234667999999974 567899999998764322 223444456788999999998877766 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++ ++ ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 599999999986 34 57999999997 67788
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=371.26 Aligned_cols=206 Identities=23% Similarity=0.322 Sum_probs=166.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|++++|||.++|+|+||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 4899999999999999999999999999999999999998 9999999999887654 5789999998776654 9
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++|||.++.. . +.+.+.+++...+ .++.++ .|++..||.+|+.+.
T Consensus 431 i~~NI~~~~~---~-----------------------~d~~i~~a~~~~g------l~~~i~--~lp~Gldt~i~e~g~- 475 (592)
T PRK10790 431 FLANVTLGRD---I-----------------------SEEQVWQALETVQ------LAELAR--SLPDGLYTPLGEQGN- 475 (592)
T ss_pred HHHHHHhCCC---C-----------------------CHHHHHHHHHHcC------cHHHHH--hccccccccccCCCC-
Confidence 9999998631 0 0111111111111 111222 256778999998654
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++|||||+++|++++||||||+||+.++..|.+.|+++.. ++|+|++ +|.. +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiv-tHr~-~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVI-AHRL-STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEE-ecch-HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998743 5666664 4443 5677899999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++..|+++++++
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=323.71 Aligned_cols=170 Identities=25% Similarity=0.312 Sum_probs=133.9
Q ss_pred eeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHh
Q 047682 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSA 937 (1425)
Q Consensus 858 vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~ 937 (1425)
=.++|..||+++++||||-||||+.++|+|-.++ .+|. .. .-.++|=||--.-....||++-|.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 4567889999999999999999999999997653 2444 10 124678888755557889999875433
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 047682 938 WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017 (1425)
Q Consensus 938 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i 1017 (1425)
.-+.. ..-+..++.+-|.|.++.+..+ .+|||||.|||+||.+|.+++++.+||||++.||++.+..+
T Consensus 427 ~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 427 RSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 21111 1123467888899999888874 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 1018 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 1018 ~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
-++||+.... ++|.+++-||... +--..||+++.+
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999998754 7899999999753 444568877665
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.57 Aligned_cols=205 Identities=25% Similarity=0.349 Sum_probs=169.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC----ccceEEEEccCCC-CCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV----PQRTAAYISQHDV-HIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 208 (1425)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999998 999999999876422 2467999999863 344
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
..||.|++.|+....+.. ..+....++++++.+||+...++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------------------------------PEEIRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCCcc--
Confidence 579999999875322110 00112346788999999887776654
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|+..++.. +|++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-illvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT-IILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecChHHHhc-CCEEEEEE
Confidence 599999999999999999999999999999999999999999999986543444 4546777777765 99999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=326.69 Aligned_cols=210 Identities=26% Similarity=0.323 Sum_probs=172.6
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4677776652 2469999999999999999999999999999999999765 357999999987542
Q ss_pred c----cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CccccccccCCCCCCcCCHH
Q 047682 908 E----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE-LNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 908 ~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ..++.++|++|+..+++.+|+.|++.+....+. .. .++..+++++.++ +.+..+.. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124568999999999999999999987654321 11 1233567777776 45555554 4579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998864 899999999986 57778999999986 678898
Q ss_pred CCCC
Q 047682 1062 GPLG 1065 (1425)
Q Consensus 1062 G~~~ 1065 (1425)
|+..
T Consensus 214 ~~~~ 217 (230)
T TIGR03410 214 GAGD 217 (230)
T ss_pred CCHH
Confidence 8864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=378.34 Aligned_cols=255 Identities=24% Similarity=0.393 Sum_probs=193.5
Q ss_pred HHhHHHHHHhhhhcccCHHHHHHHHHHHHhhcCCCCC--ceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhc
Q 047682 48 LERQRLIDKLVKVADVDNEQLLLKLKNRVDRVGISLP--EIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLH 125 (1425)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1425)
++-+.-++|+.++.+.+++.. .+....+.+ ...++|+|+++.++.
T Consensus 429 ~~~~~~~~ri~~il~~~~e~~-------~~~~~~~~~~~~~~I~~~~vsf~Y~~-------------------------- 475 (694)
T TIGR03375 429 QQAKTALQSLDELMQLPVERP-------EGTRFLHRPRLQGEIEFRNVSFAYPG-------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-------CCCCCCCCCCccceEEEEEEEEEeCC--------------------------
Confidence 455566667666666544310 000001111 246899999988732
Q ss_pred cccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEcc
Q 047682 126 ILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQ 202 (1425)
Q Consensus 126 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 202 (1425)
.++++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|
T Consensus 476 ------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 476 ------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred ------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECC
Confidence 1235899999999999999999999999999999999999998 9999999999887654 578999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
++.+| +.|++|||.++.. +.+.+++.+++...+ .+..+ -.|++..|
T Consensus 547 ~~~lf-~~TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i--~~lp~gl~ 592 (694)
T TIGR03375 547 DPRLF-YGTLRDNIALGAP-------------------------YADDEEILRAAELAG------VTEFV--RRHPDGLD 592 (694)
T ss_pred Chhhh-hhhHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC------hHHHH--HhCccccc
Confidence 77655 5699999998521 122223333322211 11112 24677889
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D 362 (1425)
|.+|+.+. .||||||||++||||++.+|++++||||||+||+.++..|.+.|+++.+ ++|+|+ ++|.. ++.+.||
T Consensus 593 T~i~e~G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~ii-ItHrl-~~~~~~D 667 (694)
T TIGR03375 593 MQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVL-VTHRT-SLLDLVD 667 (694)
T ss_pred ceecCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCH-HHHHhCC
Confidence 99998764 6999999999999999999999999999999999999999999998743 566666 44444 4668999
Q ss_pred eEEEEcCCeEEEecChhHHHH
Q 047682 363 DIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 363 ~vilL~~G~iv~~G~~~~~~~ 383 (1425)
+|++|++|+++++|+++++++
T Consensus 668 ~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 668 RIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=331.59 Aligned_cols=217 Identities=28% Similarity=0.390 Sum_probs=177.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46777777652 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAW-LRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ...++.++|++|++.+++.+||+||+.+... .+........+..+.+.++++.+++.+..+.. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 2 2334568999999877888999999987521 10000011122345678899999998777765 3479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||++|+.+|++++|||||+|||+.+...+++.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999997 57789999999997 5788888
Q ss_pred CCC
Q 047682 1063 PLG 1065 (1425)
Q Consensus 1063 ~~~ 1065 (1425)
+..
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=346.80 Aligned_cols=213 Identities=27% Similarity=0.465 Sum_probs=179.5
Q ss_pred cCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcC
Q 047682 823 EPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG 902 (1425)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g 902 (1425)
.++.++.+|+++.++ +.+++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 456677789998874 233799999999999999999999999999999999998764 589999999
Q ss_pred ccCC---cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccc------ccCC
Q 047682 903 YPKK---QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS------LVGL 973 (1425)
Q Consensus 903 ~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~------~~g~ 973 (1425)
.+.. ...+++.++||+|++.+++. |++||+.++. ++.++++ +.++++..++.+..+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~-----~~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR-----PDASDEE----IIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC-----CcCCHHH----HHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 45688999999999988765 9999998752 2333333 6778888888766544 3443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++||+++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3578999999999999999999999999999999999999999999999986 599999999984 567789999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 6 688888875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=332.28 Aligned_cols=205 Identities=24% Similarity=0.359 Sum_probs=171.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCC-CCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 210 (1425)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2357999999853 45578
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++....+.. ..+....++++++.+||.+..++.++
T Consensus 95 tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (277)
T PRK13652 95 TVEQDIAFGPINLGLD----------------------------------EETVAHRVSSALHMLGLEELRDRVPH---- 136 (277)
T ss_pred cHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCcc----
Confidence 9999998764321110 00112346778999999877776654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+.||+|++|++|
T Consensus 137 -~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 137 -HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG-MTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999876434 55565788888999999999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=329.34 Aligned_cols=206 Identities=20% Similarity=0.346 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++..... ++.++|++|++..++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999998 9999999998765432 3579999999888888
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.+..+.... .. ..+....++.+++.+||++..+..+
T Consensus 93 ~tv~enl~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (241)
T PRK10895 93 LSVYDNLMAVLQIRDD---------LS------------------------AEQREDRANELMEEFHIEHLRDSMG---- 135 (241)
T ss_pred CcHHHHHhhhhhcccc---------cC------------------------HHHHHHHHHHHHHHcCCHHHhhcch----
Confidence 9999999875432100 00 0011234567889999986655544
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.++++.+ .+. +++.++|+..++.+++|++++|++
T Consensus 136 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~-tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 136 -QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL-GVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC-EEEEEEcCHHHHHHhcCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998864 344 455567888899999999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=332.26 Aligned_cols=205 Identities=25% Similarity=0.355 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 209 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999998 999999999886432 2467999999863 6778
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++....+.. ..+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------------------------------PKKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 99999999864321100 0011234677889999987777655
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. ++++++.++|+.+++ ..+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~-~~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEA-ILADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHH-hhCCEEEEEEC
Confidence 459999999999999999999999999999999999999999999998653 334444456666666 47999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=362.49 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=184.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 6 l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 78889888763 24699999999999999999999999999999999997654335899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
.. ..++.+||++|++.+++.+||+||+.+....+.....+.++.++.++++++.+++.+..+..+ ..||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHH
Confidence 32 124569999999988999999999988653321111223344556889999999987777654 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeec
Confidence 999999999999999999999999999999999999999999877999999999986 57788999999996 6888999
Q ss_pred CCCC
Q 047682 1063 PLGR 1066 (1425)
Q Consensus 1063 ~~~~ 1066 (1425)
+..+
T Consensus 226 ~~~~ 229 (506)
T PRK13549 226 PAAG 229 (506)
T ss_pred cccc
Confidence 8754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=328.56 Aligned_cols=206 Identities=22% Similarity=0.317 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC----------------ccceE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV----------------PQRTA 197 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~~~ 197 (1425)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 35999999999999999999999999999999999999998 999999998875321 24679
Q ss_pred EEEccCCCCCCCCCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC
Q 047682 198 AYISQHDVHIGEMTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG 276 (1425)
Q Consensus 198 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 276 (1425)
+|++|++.+++..||+||+.++... .+.. . .+....++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R------------------------AEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 9999998889999999999875321 0000 0 011223567889999
Q ss_pred CcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 277 LDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 277 L~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
+++..+..+ +.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++++.++|+.++
T Consensus 136 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH-DLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH
Confidence 987666544 4699999999999999999999999999999999999999999999987643 4555557888889
Q ss_pred HHhhcCeEEEEcCCeEEEecChhHHH
Q 047682 357 TYDLFDDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 357 ~~~~~D~vilL~~G~iv~~G~~~~~~ 382 (1425)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=326.73 Aligned_cols=206 Identities=22% Similarity=0.384 Sum_probs=169.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999999863 22389999999987542 1246799999998888
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----ccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD----VCADT 283 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t 283 (1425)
+ +||+||+.++.+..+... . .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------K------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 7 999999998654321000 0 01122456788999997 44444
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
. ++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+++.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 4 456999999999999999999999999999999999999999999999865 3 4555578888899999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 047682 364 IILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~ 382 (1425)
+++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=318.78 Aligned_cols=198 Identities=20% Similarity=0.315 Sum_probs=152.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+-.+||+|.++ +.++++++++|-|.--..+||+||||.||||||++|.|...+ ..|+..-|
T Consensus 586 vLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn---- 647 (807)
T KOG0066|consen 586 VLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN---- 647 (807)
T ss_pred eeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc----
Confidence 467788888764 356799999999999999999999999999999999997764 35654322
Q ss_pred CcccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.+-.+|+..|+. .+...-|.-|.|.-.. .++.++ ....|-.+||...++++- +..|||||
T Consensus 648 ----hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLSGGQ 709 (807)
T KOG0066|consen 648 ----HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLSGGQ 709 (807)
T ss_pred ----ceeeeechhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecCCcc
Confidence 223578888863 3445667778775221 222222 346778889988888763 56799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|-||++|..-++.|+||+|||||++||..+...+-++|++. ...||+++||-.. +.+--..++|+.+.|.---.|.
T Consensus 710 KaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdGd 785 (807)
T KOG0066|consen 710 KARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDGD 785 (807)
T ss_pred hHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcccc
Confidence 99999999999999999999999999999999999999876 4679999999763 5555567888887665444443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=329.46 Aligned_cols=222 Identities=23% Similarity=0.252 Sum_probs=179.4
Q ss_pred cCceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEE
Q 047682 823 EPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIK 899 (1425)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~ 899 (1425)
.+..++++|+++.++ .+.+|+|+|+++++||++||+|||||||||||++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 334689999988763 24699999999999999999999999999999999997542 13589999
Q ss_pred EcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCC
Q 047682 900 ISGYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974 (1425)
Q Consensus 900 i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 974 (1425)
++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.+.++++.++|.+..+.....
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99987632 123567999999988877 69999998864321 1123334456678899999985422222221
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|+++ ++.+.+|++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 256899999999999999999999999999999999999999999999986 4799999999997 57889999999986
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 238 -G~i~~~g~~ 246 (267)
T PRK14237 238 -GDLIEYDKT 246 (267)
T ss_pred -CEEEEeCCH
Confidence 688899886
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=330.43 Aligned_cols=220 Identities=23% Similarity=0.263 Sum_probs=176.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ..+++.++|++|++.+++. ||.||+.+....+.. .....+.++.++++++.+++.+....... ..+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87532 2345678999999888875 999999886543311 11223334567889999999642111111 1145
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 789999999986 57788999999996 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=342.66 Aligned_cols=204 Identities=21% Similarity=0.288 Sum_probs=175.5
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc----CCc---c---cc-cceEEEee
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP----KKQ---E---TF-ARISGYCE 918 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~----~~~---~---~~-~~~~gyv~ 918 (1425)
+...+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+ ... . .. ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34679999999999999999999999999999999999765 357999999952 211 1 11 24799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 047682 919 QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 998 (1425)
Q Consensus 919 Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ 998 (1425)
|+..++|.+||+||+.|....+ ..+.+++++.++++++.+||.+..+... ..||||||||++|||+|+++|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 2345566677899999999988877763 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 999 illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|+..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999765 899999999987 57899999999997 6888999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=326.13 Aligned_cols=220 Identities=21% Similarity=0.273 Sum_probs=177.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--Cc-eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~~-~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478888887763 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.++.. ..+++.++|++|+..+++.+|++||+.+....+. ..+..+.++.++++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87532 2346679999999999999999999987543221 12233334567888999998642111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 57789999999986 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 8888885
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=331.41 Aligned_cols=216 Identities=24% Similarity=0.294 Sum_probs=179.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4788999887631 12358999999999999999999999999999999999865 3589999999875
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+.. +..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677889999998864322 223344455678999999998777665 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 899999999996 455 4999999986 68889
Q ss_pred ECCCC
Q 047682 1061 VGPLG 1065 (1425)
Q Consensus 1061 ~G~~~ 1065 (1425)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 98863
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=325.02 Aligned_cols=212 Identities=26% Similarity=0.391 Sum_probs=178.4
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4667776652 2469999999999999999999999999999999999765 347999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 908 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 908 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
. ..++.++|++|++.+++.+|+.||+.+....+ ..+.....+.++++++.+++.+..+... ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23467999999999999999999998765433 1223334456788999999987777653 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
++||++|+++|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 899999999986 57788999999996 678888885
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=344.92 Aligned_cols=195 Identities=25% Similarity=0.412 Sum_probs=169.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-------CccceEEEEccCCCCCCCCC
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-------VPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 211 (1425)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999887531 12467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.|+.+.. ....++++++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999999853200 0123567889999987776655 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++.+++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 5999999999999999999999999999999999999999999999876444 455557888999999999999999999
Q ss_pred EEEecChhHHH
Q 047682 372 IVFQGPREHVL 382 (1425)
Q Consensus 372 iv~~G~~~~~~ 382 (1425)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999884
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=336.57 Aligned_cols=223 Identities=18% Similarity=0.234 Sum_probs=179.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-c-eEEEEEEEcCcc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNIKISGYP 904 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~-~-~~~G~i~i~g~~ 904 (1425)
++++|+++.++.. .+...+|+||||+|++||++||+|+||||||||+++|+|..+. + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888777421 1124699999999999999999999999999999999997542 2 358999999987
Q ss_pred CCc---cc----ccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 047682 905 KKQ---ET----FARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG 975 (1425)
Q Consensus 905 ~~~---~~----~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 975 (1425)
+.. .. .++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.+||.+..+..- ..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--VY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--CC
Confidence 542 11 124699999997 47889999998876543321 2344556677899999999975322111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
...|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|+|++|.+
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 4899999999986 47788999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 230 -G~ive~g~~ 238 (326)
T PRK11022 230 -GQVVETGKA 238 (326)
T ss_pred -CEEEEECCH
Confidence 789999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=371.70 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=108.2
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCcCCHHHHHHHHHHHHHh---hCCc
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 998 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGqrqRl~ia~~L~---~~p~ 998 (1425)
.+...||.|+|.++..-......+.++..+.+ ++++.+||.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44568999999876542211112233344455 47889999875 4554 3579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCCC
Q 047682 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPLG 1065 (1425)
Q Consensus 999 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~~ 1065 (1425)
+++|||||+|||+.+...+++.|+++++.|.|||+++|++. .+ +.+|++++|. +||+++..|++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8999999996 368899999863
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=336.01 Aligned_cols=205 Identities=21% Similarity=0.319 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEccCCC-
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYISQHDV- 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 205 (1425)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35999999999999999999999999999999999999998 999999999875321 1357999999852
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 284 (1425)
.+..+||+||+.|+....+.. . .+....++++++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------E------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 444689999999864321100 0 01123467789999996 455555
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.++||+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 45999999999999999999999999999999999999999999999854 3 455666889999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=323.96 Aligned_cols=195 Identities=24% Similarity=0.371 Sum_probs=163.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999999998 999999999876532 235799999998899
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++....+.. . .+....++++++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------P------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 9999999999865432110 0 011224567889999987766655
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++++.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 45999999999999999999999999999999999999999999999854 34 45555788888898999999999
Q ss_pred cCCeE
Q 047682 368 SEGQI 372 (1425)
Q Consensus 368 ~~G~i 372 (1425)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=326.29 Aligned_cols=202 Identities=25% Similarity=0.333 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999998 9999999988765432 3569999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG-LDVCADTMVGDE 288 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~ 288 (1425)
+||+||+.++....+.. .....+.+++.++ +++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~---- 128 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRR---- 128 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCC----
Confidence 99999999864321100 0011244555565 44444444
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
++.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++++.++|+.+++.+++|+|++|+
T Consensus 129 -~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 129 -GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG-GMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 44699999999999999999999999999999999999999999999986533 4455557888889999999999999
Q ss_pred CCeEEEecChhHH
Q 047682 369 EGQIVFQGPREHV 381 (1425)
Q Consensus 369 ~G~iv~~G~~~~~ 381 (1425)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=328.56 Aligned_cols=205 Identities=22% Similarity=0.314 Sum_probs=169.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC----------------CccceE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF----------------VPQRTA 197 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 197 (1425)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 35999999999999999999999999999999999999988 99999999876421 113579
Q ss_pred EEEccCCCCCCCCCHHHHHHhhhh-hcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC
Q 047682 198 AYISQHDVHIGEMTVRETLAFSAR-CQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG 276 (1425)
Q Consensus 198 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 276 (1425)
+|++|++.+++.+||+||+.++.. ..+.. ..+....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999988989999999987532 11000 0011234567889999
Q ss_pred Ccccc-cccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 277 LDVCA-DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 277 L~~~~-~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
|.+.. +. ..+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH
Confidence 97643 43 3456999999999999999999999999999999999999999999999864 3 445555788888
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhHHH
Q 047682 356 ETYDLFDDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 356 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 382 (1425)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 899999999999999999999988764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=320.35 Aligned_cols=189 Identities=24% Similarity=0.381 Sum_probs=161.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC---c----ccccceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK---Q----ETFARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~~ 924 (1425)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999765 35799999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDE 1004 (1425)
+.+|++||+.+....+ .....+..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 223344456688999999998777765 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 047682 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l 1052 (1425)
||+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999985 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=320.06 Aligned_cols=198 Identities=24% Similarity=0.294 Sum_probs=166.4
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
.++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3579999999999999999999999999999999765 347999999987542 2345679999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+.+...... ... ...++.++++++.+++.+..+.. +..||||||||++||++|+.+|++++|||||+|||..
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986542211 111 22345578899999998777765 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 1013 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 1013 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999986 57788999999986 67777763
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.99 Aligned_cols=201 Identities=29% Similarity=0.422 Sum_probs=168.6
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEee-cCCCCCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ--ETFARISGYCE-QNDIHSPN 926 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 926 (1425)
+.+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34579999999999999999999999999999999999765 358999999976432 23456789997 55677789
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 047682 927 VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006 (1425)
Q Consensus 927 lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPT 1006 (1425)
+|++|++.+....+ ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998765433 2233444556788999999988777763 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 1007 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 1007 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999987 5776654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.66 Aligned_cols=217 Identities=23% Similarity=0.287 Sum_probs=179.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCce-EEEEEEEcCcc
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNIKISGYP 904 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~-~~G~i~i~g~~ 904 (1425)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788898887631 12359999999999999999999999999999999999764321 13899999987
Q ss_pred CCc---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 905 KKQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
... ...++.+||++|++. .++..||.||+.|....+ ..+.++.++.++++++.++|.+..+.. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567899999974 567899999998764322 234455556788999999998877765 45799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ +.+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 34 57999999986 6888
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99986
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=361.54 Aligned_cols=123 Identities=24% Similarity=0.297 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCcCCHHHHHHHHHHHHHhhCC---cEEE
Q 047682 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 1001 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p---~ill 1001 (1425)
.+||.|++.|...+. . . ....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~-----i-~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K-----I-ARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h-----h-hHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999998865432 1 1 123578899999763 4443 3579999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCC
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1064 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~ 1064 (1425)
|||||+|||+.+...+++.|+++.+.|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 346899999994 57899999986
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=379.50 Aligned_cols=206 Identities=26% Similarity=0.362 Sum_probs=166.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hc
Confidence 35899999999999999999999999999999999999998 9999999999887653 58899999976655 66
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|++|||.++. |+.+.+.+.+++...+ .++.+ -.++...||.+|+.+
T Consensus 568 Ti~eNi~l~~-------------------------~~~~~~~i~~al~~~~------l~~~i--~~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 568 TVRDNLTLWD-------------------------PTIPDADLVRACKDAA------IHDVI--TSRPGGYDAELAEGG- 613 (710)
T ss_pred cHHHHhhCCC-------------------------CCCCHHHHHHHHHHhC------CHHHH--HhCcCcccceeccCC-
Confidence 9999998752 1112222222222111 11111 236677899999876
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.+||||||||++||||++++|++++||||||+||+.++..|.+.|++ .++|+|+ ++|.. +....+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999975 2566666 45554 456779999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=372.91 Aligned_cols=209 Identities=23% Similarity=0.378 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+| +.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-ND 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceee-cc
Confidence 35899999999999999999999999999999999999998 9999999999887653 47899999976666 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|++|||.++... +.+.+++.+++...+ .++.++ .|++..||.+|+.+
T Consensus 432 Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~Gldt~ig~~g- 478 (582)
T PRK11176 432 TIANNIAYARTE------------------------QYSREQIEEAARMAY------AMDFIN--KMDNGLDTVIGENG- 478 (582)
T ss_pred hHHHHHhcCCCC------------------------CCCHHHHHHHHHHhC------cHHHHH--hcccccCceeCCCC-
Confidence 999999985210 011222222221111 111222 36778899999875
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|+ ++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~-VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEE-Eecch-HHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999988643 466666 44444 567889999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=326.39 Aligned_cols=219 Identities=21% Similarity=0.255 Sum_probs=175.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-ceEEEEEEEcCccC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKISGYPK 905 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~-~~~~G~i~i~g~~~ 905 (1425)
+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778877663 24699999999999999999999999999999999997431 24589999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .......++.++++++.+++.+....... .....||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567999999988887 6999999886543311 01123334557889999999532111111 124579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57788999999996 6888888
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 75
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.72 Aligned_cols=219 Identities=25% Similarity=0.347 Sum_probs=177.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc------eEEEEEEE
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNIKI 900 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~------~~~G~i~i 900 (1425)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56778777652 246999999999999999999999999999999999976432 12799999
Q ss_pred cCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 047682 901 SGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL-PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGV 976 (1425)
Q Consensus 901 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 976 (1425)
+|.+... ..+++.++|++|++..++.+|++||+.+....+. .......+.++.++++++.+++.+..+.. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 2345568999999876667999999987532111 00111123345678899999998766654 4
Q ss_pred CcCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhc
Q 047682 977 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1046 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~f 1046 (1425)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998776 899999999986 577889
Q ss_pred CEEEEEeCCcEEEEECCCC
Q 047682 1047 DELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1047 D~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999996 6888999864
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=336.38 Aligned_cols=226 Identities=24% Similarity=0.260 Sum_probs=183.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++.+|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|.... .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478889888774321000 001235799999999999999999999999999999999997653 479999999875
Q ss_pred Cc------ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCC
Q 047682 906 KQ------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGV 976 (1425)
Q Consensus 906 ~~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 976 (1425)
.. ..+++.++|++|++ .+.|.+|+.+++....... ......+.++.+.++++.+||.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999997 5789999999997654332 12344556677899999999963 44544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..||||||||++||+||+.+|++|++||||+|||..++..+++.|+++.++ |.|||++||+.+ .+.+.+|+|++|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 46678999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|+++..|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 6889999863
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=329.40 Aligned_cols=204 Identities=22% Similarity=0.300 Sum_probs=168.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCC-CCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 210 (1425)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2467999999864 68888
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|+++|+.|.....+.. . .+....++.+++.+|+.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP----------Y------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 9999998864322110 0 011224567889999987666554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+..+.| |+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-iiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT-IISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCchHHhc-CCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999986533445 4446677777765 9999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988774
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=329.14 Aligned_cols=204 Identities=27% Similarity=0.386 Sum_probs=169.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-----ccceEEEEccCCC-CCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-----PQRTAAYISQHDV-HIG 208 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 208 (1425)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999998 999999999874211 2467999999852 445
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
..||+||+.++....+. .+ .+....+..+++.+||++..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL----------SK------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCC----------CH------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 67999999875321110 00 0112245678999999877776654
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||++++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999865 3 4555667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=324.59 Aligned_cols=200 Identities=22% Similarity=0.369 Sum_probs=166.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 211 (1425)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5899999999999999999999999999999999999998 999999998875432 2467999999877665 69
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccCccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVGDEML 290 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~ 290 (1425)
|+||+.++....+ . ....++.+++.+||+ +..++. +
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRD-----V 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 9999987532110 0 011245678889996 344443 4
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.+..+. +|+.++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~-tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL-TVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeccHHHHHHhCCEEEEEeCC
Confidence 569999999999999999999999999999999999999999999998654344 4555788888999999999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.58 Aligned_cols=203 Identities=26% Similarity=0.396 Sum_probs=169.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC----ccceEEEEccCCC-CCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV----PQRTAAYISQHDV-HIGE 209 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~~ 209 (1425)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4999999999999999999999999999999999999998 999999999876432 2357999999864 4677
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
.||+||+.++....+.. ..+....++++++.+||++..++.++
T Consensus 93 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 135 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP----------------------------------PIEIRKRVDRALAEIGLEKYRHRSPK--- 135 (274)
T ss_pred chHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCCcc---
Confidence 89999999865322110 00112346678899999887776554
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++ ..+|+|++|++
T Consensus 136 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 136 --TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999864 3 44555567777777 56999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=327.07 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=165.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999998620 1289999999886421 1246799999987776
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----ccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD----VCADT 283 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t 283 (1425)
.+||+||+.++....+... ..+....++..++.+|+. +..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKD---------------------------------KKKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4899999998643221000 001122345667777763 33444
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
. ++.|||||||||+|||+|+.+|++++|||||+|||..++..+.+.|+++.+ + ++++.++|+..++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--S-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999999843 4 4555578888889999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 047682 364 IILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~ 382 (1425)
+++|++|+++.+|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=327.39 Aligned_cols=206 Identities=18% Similarity=0.301 Sum_probs=166.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987510 1289999999887532 124579999998777
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----cccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD----VCAD 282 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~ 282 (1425)
++ +||+||+.|+.+..+.. . .+....++++++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------K------------------------KDLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCCcchhhhhc
Confidence 77 89999999864322110 0 00112356678888884 2334
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D 362 (1425)
+. ++.|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+.+++.+++|
T Consensus 150 ~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 SP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHHhCC
Confidence 33 456999999999999999999999999999999999999999999999843 4 455557888889999999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 047682 363 DIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 363 ~vilL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=336.52 Aligned_cols=225 Identities=20% Similarity=0.280 Sum_probs=182.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-eEEEEEEEcCcc
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKISGYP 904 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~~~G~i~i~g~~ 904 (1425)
-++++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47888988776421 12356999999999999999999999999999999999976532 237999999987
Q ss_pred CCc---cc---cc-ceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 047682 905 KKQ---ET---FA-RISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG 975 (1425)
Q Consensus 905 ~~~---~~---~~-~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 975 (1425)
+.. .. ++ +.++|++|++ .+.|.+|+.+++.+...... ..+.++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 542 11 22 4799999998 67899999999977654332 234455566788999999997533221 1 22
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+.+||||||||++||+||+.+|++|++||||+|||..++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999999765 899999999986 46778999999986
Q ss_pred CcEEEEECCCC
Q 047682 1055 GGYEIYVGPLG 1065 (1425)
Q Consensus 1055 Gg~~~y~G~~~ 1065 (1425)
|+++..|+..
T Consensus 238 -G~ive~g~~~ 247 (330)
T PRK09473 238 -GRTMEYGNAR 247 (330)
T ss_pred -CEEEEECCHH
Confidence 6899999863
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=334.42 Aligned_cols=219 Identities=19% Similarity=0.295 Sum_probs=176.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. ......+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 47889998877310 0001359999999999999999999999999999999999765 3479999999875
Q ss_pred C--------cccccceEEEeecCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCC
Q 047682 906 K--------QETFARISGYCEQNDIH-SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPG 975 (1425)
Q Consensus 906 ~--------~~~~~~~~gyv~Q~~~~-~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~ 975 (1425)
. ....++.++|++|++.. ....|++||+.|....+ ....+...+.++++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999732 23469999998864322 223344445678899999994 555554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 57889999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 678888875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=329.52 Aligned_cols=206 Identities=32% Similarity=0.489 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999998 9999999988754322 35699999998887889
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++....+. . . ++....++.+++.+||++..++.++
T Consensus 92 tv~e~l~~~~~~~~~-~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (258)
T PRK13548 92 TVEEVVAMGRAPHGL-S---------R------------------------AEDDALVAAALAQVDLAHLAGRDYP---- 133 (258)
T ss_pred CHHHHHHhhhcccCC-C---------c------------------------HHHHHHHHHHHHHcCCHhHhcCCcc----
Confidence 999999885321110 0 0 0012235678899999876666554
Q ss_pred ccCChhhhhhHHHHHHHh------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 291 RGISGGQRKRVTTGEMLV------GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~------~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++.+..+. +|+.++|+..++.+++|+|
T Consensus 134 -~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 134 -QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGL-AVIVVLHDLNLAARYADRI 211 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEECCHHHHHHhcCEE
Confidence 59999999999999999 599999999999999999999999999998744444 5555788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=333.91 Aligned_cols=235 Identities=28% Similarity=0.451 Sum_probs=193.1
Q ss_pred hcCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCC
Q 047682 78 RVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPA 157 (1425)
Q Consensus 78 ~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~G 157 (1425)
+..++-|+..++.|++++-. ...++++|+|+||.+.+|+-++|+||||
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~P--------------------------------Pg~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAP--------------------------------PGQKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred CCCCCCCCceeeEeeeeecC--------------------------------CCCCCcceecceeEecCCceEEEECCCC
Confidence 45567788889999988721 1234679999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc---ceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhH
Q 047682 158 SGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVE 234 (1425)
Q Consensus 158 sGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 234 (1425)
||||||.|+|.|..+|. +|.|.+||.+++..+.. +.|||.||+ ..++..||.|||. |+
T Consensus 373 SGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-VeLF~GTIaeNIa---Rf------------ 433 (580)
T COG4618 373 SGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-VELFDGTIAENIA---RF------------ 433 (580)
T ss_pred ccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-ceecCCcHHHHHH---hc------------
Confidence 99999999999999998 99999999999877653 889999995 5555679999996 22
Q ss_pred hhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEe
Q 047682 235 LSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALAL 314 (1425)
Q Consensus 235 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~il 314 (1425)
.++.|.+.+.+|+...+ ..|- ++.|++.+||.||+.+. +||||||||+++||||+++|.++
T Consensus 434 ----------~~~~d~~kIieAA~lAg-----vHel---Il~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 434 ----------GEEADPEKVIEAARLAG-----VHEL---ILRLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred ----------cccCCHHHHHHHHHHcC-----hHHH---HHhCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCCcEE
Confidence 12344455555543322 2233 36799999999998665 69999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHHHH
Q 047682 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFF 385 (1425)
Q Consensus 315 lLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F 385 (1425)
+||||-|.||++.+..+.+.+.+... .|+|+|++ .|++.+...+|+|++|++|++-.+|+++|++...
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvvi--aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVI--AHRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEE--ecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 99999999999999999999998754 46666663 4456799999999999999999999999998754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=331.29 Aligned_cols=208 Identities=23% Similarity=0.332 Sum_probs=169.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCC-CCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 210 (1425)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4899999999999999999999999999999999999987212399999999886432 2357999999863 67789
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.|..+..+.. .++....++.+++.+||++..++.+
T Consensus 101 tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998864322110 0111234677899999987666554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++..+.| |+.++|+..++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-vli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999987543445 44466777777 589999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
++++.|+++++.+
T Consensus 220 ~i~~~g~~~~~~~ 232 (282)
T PRK13640 220 KLLAQGSPVEIFS 232 (282)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=343.01 Aligned_cols=199 Identities=24% Similarity=0.422 Sum_probs=170.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-------CccceEEEEccCCCCCCCCC
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-------VPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 211 (1425)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999998 99999999987532 12467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.|+.+... . .+....++++++.+||++..++.+ +
T Consensus 92 v~enl~~~~~~~~------------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------P------------------------SERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC------------h------------------------hHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998643110 0 001224567899999988777655 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++.+..+. +++.++|+.+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~-tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI-PILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 59999999999999999999999999999999999999999999998764444 45557888889999999999999999
Q ss_pred EEEecChhHHH
Q 047682 372 IVFQGPREHVL 382 (1425)
Q Consensus 372 iv~~G~~~~~~ 382 (1425)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=332.61 Aligned_cols=218 Identities=21% Similarity=0.291 Sum_probs=179.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 77889888774110 0012469999999999999999999999999999999999765 35799999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 907 Q----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ~----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
. ...++.+||++|++. .+...||.|++.|..... .....+.++.++++++.+||.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 3 234567999999974 233469999998865422 2334455567899999999988877764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 999999999997 354 4999999987 67888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 225 ~g~~ 228 (280)
T PRK13633 225 EGTP 228 (280)
T ss_pred ecCH
Confidence 8875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=323.59 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=162.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCC--CC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHD--VH 206 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 206 (1425)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999998 999999999876533 246799999987 46
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMV 285 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~v 285 (1425)
++.+||+||+.+.....+... .+ .......+.+++.++|. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~----------~~----------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLS----------KK----------------------EARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCc----------HH----------------------HHHHHHHHHHHHHCCCChhHhhCCc
Confidence 678999999988643221100 00 00011124678888985 4455444
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++..++ +|+.++|+.+++.+++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGL-TLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCeEE
Confidence 459999999999999999999999999999999999999999999998754344 45557788888888999999
Q ss_pred EEcCCeEEEec
Q 047682 366 LISEGQIVFQG 376 (1425)
Q Consensus 366 lL~~G~iv~~G 376 (1425)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=336.07 Aligned_cols=211 Identities=20% Similarity=0.302 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
.++|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|+++.
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 01289999999998632 235679999998776
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
+ +.||+||+.|+....+.. .. +..+..++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~----------~~-----------------------~~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIN----------DR-----------------------KILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCC----------hH-----------------------HHHHHHHHHHHHHcCCcchhhhhhh
Confidence 6 589999999864322100 00 0011224556777777655455665
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+ ....|||||||||+||||++.+|+|++|||||+|||+.+...+.+.|+++.+ + .++++++|....+.+.+|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4557999999999999999999999999999999999999999999998854 3 4566678888889999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999884
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=366.77 Aligned_cols=206 Identities=26% Similarity=0.428 Sum_probs=165.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+| +.|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SAT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhh-ccc
Confidence 5899999999999999999999999999999999999998 9999999999887654 46799999976655 569
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++||+.++.. +.+.+++.+++...+ .+..+ -. ++..||.+|+.+.
T Consensus 430 i~~Ni~~~~~-------------------------~~~~~~i~~al~~~~------l~~~i--~~-p~GldT~vge~g~- 474 (574)
T PRK11160 430 LRDNLLLAAP-------------------------NASDEALIEVLQQVG------LEKLL--ED-DKGLNAWLGEGGR- 474 (574)
T ss_pred HHHHhhcCCC-------------------------ccCHHHHHHHHHHcC------CHHHH--cC-ccccCchhcCCCC-
Confidence 9999998631 111111222211111 01111 12 5678999998654
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++||||++++|++++|||||++||+.++..|.+.|+++.+ ++|+|++ +|..+ ....+|+|++|++|+
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviii-tHr~~-~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMI-THRLT-GLEQFDRICVMDNGQ 550 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEE-ecChh-HHHhCCEEEEEeCCe
Confidence 6999999999999999999999999999999999999999999998743 5666664 44444 456799999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+++++++
T Consensus 551 i~~~g~~~~l~~ 562 (574)
T PRK11160 551 IIEQGTHQELLA 562 (574)
T ss_pred EEEeCCHHHHHh
Confidence 999999999864
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=329.33 Aligned_cols=214 Identities=22% Similarity=0.289 Sum_probs=174.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.++++|+++.++ .+.+|+|+|++|++||+++|+|||||||||||++|+|..+. .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997531 13589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++ .||+||+.+.+..+. ... ..++.++++++.+++.. ..+..
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~--- 151 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES--- 151 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC---
Confidence 87531 234567999999998887 499999988654331 112 23345677888888743 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.+|++++|+
T Consensus 152 --~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 152 --GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5888999999999
Q ss_pred C--------C--cEEEEECCC
Q 047682 1054 R--------G--GYEIYVGPL 1064 (1425)
Q Consensus 1054 ~--------G--g~~~y~G~~ 1064 (1425)
+ | |++++.|++
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 6 3 678888876
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=325.98 Aligned_cols=209 Identities=26% Similarity=0.350 Sum_probs=173.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 467888887762 2469999999999999999999999999999999999765 3479999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSg 981 (1425)
.. ...++.++|++|++.+++ .|++||+.+....+ . . .++.+.++++.++|. +..+.. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988876 69999997653221 1 1 123567889999996 455543 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57788999999997 57788
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=322.45 Aligned_cols=199 Identities=29% Similarity=0.390 Sum_probs=170.7
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-TFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
+|+|+|++|+|||+++|+|+||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999765 3579999999876431 234578999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+.+..... .....+.++.+.++++.++|.+..+..+ ..||||||||++||++|+++|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764322 2233444456788999999988777663 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1013 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1013 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 899999999986 57788999999986 678888875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=376.11 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=167.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||+++++... ++.++||+|++.+| +.|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF-SGS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceeh-hHH
Confidence 4899999999999999999999999999999999999998 9999999999877654 57899999977665 569
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+|||.++.+ |+.+.+.+.+++...+ .++.+ -.++...||.||+.+ .
T Consensus 564 I~eNi~l~~~------------------------~~~~~~~i~~a~~~a~------l~~~i--~~lp~gldt~i~e~G-~ 610 (708)
T TIGR01193 564 ILENLLLGAK------------------------ENVSQDEIWAACEIAE------IKDDI--ENMPLGYQTELSEEG-S 610 (708)
T ss_pred HHHHHhccCC------------------------CCCCHHHHHHHHHHhC------CHHHH--HhcccccCcEecCCC-C
Confidence 9999998631 1111222222222111 11112 246778899999865 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
+||||||||++||||++++|++++||||||+||+.++..+.+.|+++ .++|+|+ ++|.. ++.+.+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~-~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRL-SVAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-Eecch-HHHHcCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999874 2566655 45554 4668899999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++++|+++++++
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=324.73 Aligned_cols=203 Identities=25% Similarity=0.328 Sum_probs=168.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC------C---CccceEEEEccCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE------F---VPQRTAAYISQHDV 205 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d~ 205 (1425)
.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999999998 9999999987631 1 12357999999988
Q ss_pred CCCCCCHHHHHHhhh-hhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 206 HIGEMTVRETLAFSA-RCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
+++.+||+||+.+.. ...+.. . .+....++..++.+||+...++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------K------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 999999999997532 111100 0 01122456788999998766655
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+ +.|||||||||+||||++.+|++++|||||+|||..++..+.+.|+++.+ .+ ++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG-ITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999998854 34 45555788888998999999
Q ss_pred EEEcCCeEEEecChhHH
Q 047682 365 ILISEGQIVFQGPREHV 381 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~ 381 (1425)
++|++|+++++|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=320.15 Aligned_cols=197 Identities=25% Similarity=0.332 Sum_probs=162.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5899999999999999999999999999999999999998 9999999998765432 24699999998888
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.+.....+.. ..+....++.+++.+||.+..+..++
T Consensus 101 ~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~- 145 (228)
T PRK10584 101 PTLNALENVELPALLRGES----------------------------------SRQSRNGAKALLEQLGLGKRLDHLPA- 145 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhCChh-
Confidence 9999999998864321100 00112345678899999876665554
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+ ++|+..++ +.+|++++|
T Consensus 146 ----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 146 ----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL-VTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHH-HhCCEEEEE
Confidence 599999999999999999999999999999999999999999999986544455554 66777666 559999999
Q ss_pred cCCeEEEe
Q 047682 368 SEGQIVFQ 375 (1425)
Q Consensus 368 ~~G~iv~~ 375 (1425)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.00 Aligned_cols=211 Identities=23% Similarity=0.290 Sum_probs=174.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ + + ..|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~-~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH------------H-L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC------------C-c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 56788887763 1 1 138999999999999999999999999999999765 35799999998754
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 QE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.++|.+..+..+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 22457899999999999999999998653211 111 1233456889999999988777764 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999996 688898875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=292.73 Aligned_cols=205 Identities=24% Similarity=0.376 Sum_probs=177.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
..+|+|+|+.|.+||.++++||||||||||||+++|+.+|. .|+|.+||++++- +...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999998 9999999998764 334568999999999999999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||++|+.++.|.++. +....+.+.+...||++..+..+ -.|
T Consensus 93 dNvafgL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~~~i-----~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEHKYI-----WQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHhCcccccccce-----Eee
Confidence 999999998886432 11234567889999998766544 569
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc--CCe
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS--EGQ 371 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~--~G~ 371 (1425)
||||||||.|||||..+|+.|+||||+++||.-|+.++.+.|-++.+..++.+. .++|+.+|..-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~l-liTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVL-LITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEE-EEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999998887665554 47999999999999999998 489
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
|+..=+.+-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998766664433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=325.34 Aligned_cols=212 Identities=23% Similarity=0.366 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++..... ..+...... ...+....++++++.+|+++..++.++
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLAG--- 142 (242)
T ss_pred CCHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCChh---
Confidence 999999998643110 000000000 000112346778999999877666554
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ ++ +|+.++|+.+++.++||+|++|++
T Consensus 143 --~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 143 --LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KH-SVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CC-EEEEEECCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999854 44 555578888899999999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|+++++|+.+++.
T Consensus 218 g~~~~~~~~~~~~ 230 (242)
T TIGR03411 218 GSVLAEGSLDQVQ 230 (242)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=328.59 Aligned_cols=210 Identities=22% Similarity=0.338 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999998875432 235799999988888999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||.||+.++..... .... .. . ......++.+++.+||++..++.++
T Consensus 101 tv~e~l~~~~~~~~--~~~~--------------~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 146 (265)
T PRK10575 101 TVRELVAIGRYPWH--GALG--------------RF-G-------------AADREKVEEAISLVGLKPLAHRLVD---- 146 (265)
T ss_pred cHHHHHHhCccccc--cccc--------------CC-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 99999987532100 0000 00 0 0012245678899999876666654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++..+ ++|+.++|+.+++.+.+|+|++|++|
T Consensus 147 -~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999865434 44555788888999999999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999987763
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=373.48 Aligned_cols=206 Identities=25% Similarity=0.408 Sum_probs=163.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999887653 47899999976655 67
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|+||||.++.. +.+.+++.+++...+. +..++ .|++..||.+|+.+
T Consensus 570 TIreNI~~g~~-------------------------~~~~e~i~~al~~a~l------~~~i~--~lp~GldT~ige~G- 615 (711)
T TIGR00958 570 SVRENIAYGLT-------------------------DTPDEEIMAAAKAANA------HDFIM--EFPNGYDTEVGEKG- 615 (711)
T ss_pred CHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCC------HHHHH--hCCCccCCcccCCC-
Confidence 99999998632 1111222222211111 11222 35677899999865
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..||||||||++||||++++|+|++||||||+||+.++..+.+ ... ..++|+|+ ++|.. +..+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl-~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRL-STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccH-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999998887 221 23455555 55555 456789999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+|+++|+++++++
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=337.99 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=175.8
Q ss_pred CceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc
Q 047682 824 PLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY 903 (1425)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~ 903 (1425)
+-+++|+||++++. +++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|+|.|||.
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34699999999884 34569999999999999999999999999999999998654 4799999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCC
Q 047682 904 PKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGL 973 (1425)
Q Consensus 904 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 973 (1425)
++++ +..|+.+||||||..+|. -||.+|+.|+. ++.+.++ |-++.+..++.+. .++.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8653 567889999999988775 59999999863 3444443 4455566666543 3445665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
.| ..|||||||||+|||+++.||+|+++|||||.||+.+...+++.+++.. .|+|+|++.|+. ++...||+|++|+
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 53 4699999999999999999999999999999999999999999999843 589999999997 5788999999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |.+...|+-
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 8 567787875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=324.97 Aligned_cols=207 Identities=22% Similarity=0.317 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcccEEEECCccCCCC-----CccceEEEEccCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-----PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHD 204 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 204 (1425)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 58999999999999999999999999999999999864 34 89999999987532 1246799999988
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.+++ .||+||+.++....+...+ ......++..++.+||.+...+.
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7777 5999999987533211000 00122355677888885422112
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
. ++..+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+ + .+|+.++|+..++.+++|+|
T Consensus 143 ~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 143 L-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--R-YTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CeEEEEEecHHHHHHhCCEE
Confidence 2 234557999999999999999999999999999999999999999999999843 4 45555788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=312.65 Aligned_cols=190 Identities=49% Similarity=0.843 Sum_probs=161.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC--CCceEEEEEEEcCc
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNIKISGY 903 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~--~~~~~~G~i~i~g~ 903 (1425)
.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478889988774210 001246999999999999999999999999999999999976 4 45899999998
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 904 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 904 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8654445677999999998899999999997643110 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986557788999999997 5776654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=325.39 Aligned_cols=215 Identities=27% Similarity=0.296 Sum_probs=174.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--Cc-eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~~-~~~G~i~i~g 902 (1425)
-++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 378899888763 2469999999999999999999999999999999999632 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ..+++.++|++|+..+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87532 234567999999988877 899999987653321 1122333456788899988753 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5788999999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 7 678888875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=322.58 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=167.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCcccEEEECCccCCCCCc-cceEEEEccCCC--CCC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP----SLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDV--HIG 208 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 208 (1425)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999988 6 9999999998765433 257999999864 556
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc---cccccc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV---CADTMV 285 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~~t~v 285 (1425)
.+|+.|++.+.....+.. . .+....++++++.+||++ ..+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPEEVLKK-- 121 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchHHHHhC--
Confidence 789999998754321100 0 011234667899999973 3333
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
.+..|||||||||+||+|++.+|++++|||||+|||..+...+.+.|+++.+.. +++|+.++|+.+++..++|+++
T Consensus 122 ---~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 122 ---YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF-GTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred ---ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 345699999999999999999999999999999999999999999999986533 4455557888889999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|+++..|+.+++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=328.16 Aligned_cols=221 Identities=22% Similarity=0.297 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.++++
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765332 2358999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++........ ....... .+... ....+....++..++.+||++..++.+
T Consensus 95 ~tv~enl~~~~~~~~~~~---~~~~~~~-------~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 151 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTG---LFSGLLK-------TPAFR---------RAESEALDRAATWLERVGLLEHANRQA---- 151 (255)
T ss_pred CcHHHHHHHhhhccccch---hhhhhcc-------ccccc---------cchhHHHHHHHHHHHhCChhhhhhCCh----
Confidence 999999998643110000 0000000 00000 000011234567889999987666555
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+..+ ++|+.++|+..++.+++|++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 45999999999999999999999999999999999999999999999865334 4555578888899999999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=328.43 Aligned_cols=207 Identities=24% Similarity=0.324 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCC--C
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHD--V 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~ 205 (1425)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999998 999999999876532 235699999985 4
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 284 (1425)
+.+.+||+||+.+....... .. ..+....++++++.+||+ ...+..
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~gl~~~~~~~~ 147 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTS---------LD------------------------ESEQKARIAELLDMVGLRSEDADKL 147 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcC---------CC------------------------HHHHHHHHHHHHHHcCCChhhhhCC
Confidence 66789999999875421100 00 001123456788999996 555554
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+...+.+++|++
T Consensus 148 ~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 148 P-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG-TAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHHhcEE
Confidence 4 46999999999999999999999999999999999999999999999875434 45555788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 222 AVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEeCCEEEEECCHHHHc
Confidence 999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=326.46 Aligned_cols=219 Identities=20% Similarity=0.251 Sum_probs=175.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--Cc-eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~~-~~~G~i~i~g 902 (1425)
-++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 378899988763 2469999999999999999999999999999999999653 11 1479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.+||++|++.+++. ||+||+.+....+. ....++.++.++++++.+++.+....... ....
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87532 2345679999999888875 99999987643321 11233444567888999988542111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 57789999999986 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 8888875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=321.87 Aligned_cols=196 Identities=22% Similarity=0.332 Sum_probs=164.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 35999999999999999999999999999999999999998 999999999876432 235799999998888
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.+.....+.. .++....++..++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGAS----------------------------------GDDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ccccHHHHHHhHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCc--
Confidence 9999999999864322110 0011223566788999987666544
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.+ . +++++.++|+.+++.+.+|+|++|
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999864 2 455666788888999999999999
Q ss_pred cCCeEE
Q 047682 368 SEGQIV 373 (1425)
Q Consensus 368 ~~G~iv 373 (1425)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=335.67 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=177.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--ceEEEEEEEcCcc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNIKISGYP 904 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~--~~~~G~i~i~g~~ 904 (1425)
++++|+++.+... .+...+|+|||++|++||++||+|+||||||||+++|+|.... .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788888777421 1235699999999999999999999999999999999997542 2357999999987
Q ss_pred CCc---cc----ccceEEEeecCCC--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCccccccccC
Q 047682 905 KKQ---ET----FARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPD---VDSETRRMFLEEIMELVELNPLRQSLVG 972 (1425)
Q Consensus 905 ~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~E~l~~~~~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~~~~~~g 972 (1425)
+.. .. .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.+||.+..+..
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-- 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM-- 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH--
Confidence 532 11 1346999999975 5788999999976422110000 11223456688999999997532211
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEE
Q 047682 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 1051 (1425)
Q Consensus 973 ~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~ 1051 (1425)
...+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.+|++++
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 1124579999999999999999999999999999999999999999999999874 899999999986 57789999999
Q ss_pred EeCCcEEEEECCC
Q 047682 1052 MKRGGYEIYVGPL 1064 (1425)
Q Consensus 1052 l~~Gg~~~y~G~~ 1064 (1425)
|.+ |+++..|+.
T Consensus 232 m~~-G~ive~g~~ 243 (330)
T PRK15093 232 LYC-GQTVETAPS 243 (330)
T ss_pred EEC-CEEEEECCH
Confidence 986 789999986
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=324.65 Aligned_cols=215 Identities=21% Similarity=0.230 Sum_probs=175.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
-++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 367888887663 246999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++ .|++||+.|...... .....+.++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87532 123567999999998887 899999987654321 1123344456788999998853 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999876 689999999986 5788899999998
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 6 678888886
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=322.80 Aligned_cols=202 Identities=28% Similarity=0.350 Sum_probs=166.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHH
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETL 216 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 216 (1425)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999998 9999999998765432 358999998889999999999
Q ss_pred HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 047682 217 AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296 (1425)
Q Consensus 217 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 296 (1425)
.++..... .. ... .+....++.+++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~-~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVL-PD-------LSK------------------------SERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcc-cC-------CCH------------------------HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 88532100 00 000 0112245678899999877666554 59999
Q ss_pred hhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEec
Q 047682 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376 (1425)
Q Consensus 297 qrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G 376 (1425)
|||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+. +|+.++|+..++.+++|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~-tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV-TVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999998764444 4555788888999999999999999999988
Q ss_pred ChhHH
Q 047682 377 PREHV 381 (1425)
Q Consensus 377 ~~~~~ 381 (1425)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=325.09 Aligned_cols=219 Identities=19% Similarity=0.249 Sum_probs=173.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--Cc-eEEEEEEEcCc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKISGY 903 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~~-~~~G~i~i~g~ 903 (1425)
-+++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35667776552 2469999999999999999999999999999999999753 11 25899999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 904 PKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 904 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
+... ...++.++|++|++.+++. |+.||+.+....+. ........++.++++++.+++.+........ .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245679999999888875 99999987643321 1112233445678899999986522111111 2457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 57788999999997 688
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=340.08 Aligned_cols=190 Identities=24% Similarity=0.377 Sum_probs=166.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-------ETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999765 348999999977532 1235679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
+||+.|... ...++.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 11234578999999998877776 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1010 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999765 899999999986 68889999999997 688898886
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=319.52 Aligned_cols=194 Identities=27% Similarity=0.428 Sum_probs=160.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 209 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.+.. .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999998 999999999876432 2367999999864 4678
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------E------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99999998864321100 0 011223567888999987666554
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. +++++.++|+.+++.++||+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 459999999999999999999999999999999999999999999998653 44566678888899999999999999
Q ss_pred Ce
Q 047682 370 GQ 371 (1425)
Q Consensus 370 G~ 371 (1425)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=340.26 Aligned_cols=194 Identities=25% Similarity=0.381 Sum_probs=168.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-------ETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999765 347999999987532 1235679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
+||+.|+.... ...+.++.++++++.++|.+..+.. +..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 1233445688999999998877776 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1010 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999865 899999999996 57888999999997 688898875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=328.26 Aligned_cols=223 Identities=20% Similarity=0.253 Sum_probs=178.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.+.. +...+.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 788999887742100 000012469999999999999999999999999999999999865 35799999998754
Q ss_pred c---ccccceEEEeecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCC
Q 047682 907 Q---ETFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~--~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lS 980 (1425)
. ...++.++|++|++. +.+.+|+.|++.+...... ........+.++++++.++|. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 122356899999875 5678899999987654331 223334445678999999994 455544 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57778999999986 6778
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=324.97 Aligned_cols=212 Identities=20% Similarity=0.321 Sum_probs=168.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCC--C---CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDE--F---VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|+++|+++.. . ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5999999999999999999999999999999999999762 1138999999998752 1 1245799999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++....+.... ..+....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKS--------------------------------KKELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCC--------------------------------HHHHHHHHHHHHHHcCCccchhhhh-c
Confidence 999999999986532211000 0011123566788888743211111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+..+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+++.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34456999999999999999999999999999999999999999999999853 4 45555788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=317.74 Aligned_cols=191 Identities=25% Similarity=0.375 Sum_probs=162.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-------ETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
|+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999765 347999999976531 1235679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
+||+.+..... .....++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2233445678899999998766654 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 1010 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|+.+++.+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 57788999999997 5776654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=329.29 Aligned_cols=205 Identities=28% Similarity=0.382 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-----CccceEEEEccCCC-CC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDV-HI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~ 207 (1425)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999998 99999999987421 12357999999864 34
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+..|+.||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------E------------------------AEITRRVDEALTLVDAQHFRHQPI-- 134 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhcCCc--
Confidence 5678999998864322110 0 011223567888999987766655
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|
T Consensus 135 ---~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 135 ---QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 45999999999999999999999999999999999999999999999864 34 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=325.64 Aligned_cols=221 Identities=21% Similarity=0.254 Sum_probs=177.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
.++++|+++.++ +..+|+|+|+++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999988763 235999999999999999999999999999999999975431 2369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.++|++|+..+++ .|+.||+.+...... .....+.++.+.++++.+++.+..+..... .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87521 234567999999988887 899999987643221 112233345678899999985422211111 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCC-
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1055 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~G- 1055 (1425)
.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999996 588899999999974
Q ss_pred ---cEEEEECCC
Q 047682 1056 ---GYEIYVGPL 1064 (1425)
Q Consensus 1056 ---g~~~y~G~~ 1064 (1425)
|+++++|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 788999986
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=323.94 Aligned_cols=215 Identities=22% Similarity=0.286 Sum_probs=174.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887763 23699999999999999999999999999999999996431 12479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87542 134567899999988887 899999988654321 1123344566788888888753 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999854 899999999986 5778899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 7 678888875
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=321.14 Aligned_cols=206 Identities=27% Similarity=0.370 Sum_probs=173.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+.. .++.++|++|++..++.+|+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999998 999999999876533 24679999999888889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.++....+.. .......++.+++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLP----------------------------------KAEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 99998864432110 0011224567889999987776655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.+..+.|+++ ++|+..++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii-~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF-VTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543445544 67888889999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=334.72 Aligned_cols=217 Identities=16% Similarity=0.167 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCccCCCCCc-------cceEEEEccCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL-KLSGRVTYNGHNMDEFVP-------QRTAAYISQHDV 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 205 (1425)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 469999999999999999999999999999999999986311 128999999998765432 246999999864
Q ss_pred --CCCCCCHHHHHHhhhhhcCC-CCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 206 --HIGEMTVRETLAFSARCQGV-GSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 206 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
+.+.+||.+++.+....... +.++ .. ..+....+.++++.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~-------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QR-------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------cc-------------HHHHHHHHHHHHHHCCCCChHH
Confidence 67889999999864221100 0000 00 0011234677899999975321
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D 362 (1425)
+-++.+..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+.. +++++.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 1134456799999999999999999999999999999999999999999999987644 4556668999999999999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 047682 363 DIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 363 ~vilL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=327.13 Aligned_cols=210 Identities=23% Similarity=0.380 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 35999999999999999999999999999999999999998 9999999998754332 35699999998888899
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++..-.. ... ... .......++.+++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~--~~~----------------~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (265)
T PRK10253 97 TVQELVARGRYPHQ--PLF----------------TRW------------RKEDEEAVTKAMQATGITHLADQSV----- 141 (265)
T ss_pred cHHHHHHhCccccc--ccc----------------cCC------------CHHHHHHHHHHHHHcCCHHHhcCCc-----
Confidence 99999987521000 000 000 0001224567889999987666554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.+++|++++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG-YTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999865334 45555788888999999999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
++++.|+.+++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=323.89 Aligned_cols=218 Identities=23% Similarity=0.301 Sum_probs=174.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcCc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISGY 903 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g~ 903 (1425)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887662 246999999999999999999999999999999999975421 25799999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 904 PKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 904 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... ...+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7532 134567999999998887 899999987653321 1122334455788889988864211111 112467
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999986 57888999999997 577
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 888875
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=320.29 Aligned_cols=206 Identities=29% Similarity=0.445 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 35999999999999999999999999999999999999988 9999999998765333 3679999999888889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.+..+..+.. . ......++++++.+++....++.+ +.
T Consensus 90 ~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHP----------K------------------------AKIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred HHHHHhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 99998864422100 0 001123467888899976666554 45
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+..++|+++ ++|...++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli-~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986533445544 67777888999999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988774
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=320.22 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=167.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999998 999999998775432 35799999998888899999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.+.....+. .+..++.+++.+||++..|..+ +.|
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 999876432110 0112456788899987666554 459
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 373 (1425)
|||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.+ .+. +|+.++|+..++.+.+|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~-tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGI-TVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCC-EEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999864 344 4555778888899999999999999999
Q ss_pred EecChh
Q 047682 374 FQGPRE 379 (1425)
Q Consensus 374 ~~G~~~ 379 (1425)
+.|+..
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=323.69 Aligned_cols=219 Identities=23% Similarity=0.237 Sum_probs=174.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367888887663 246999999999999999999999999999999999975421 3479999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 903 YPKKQ----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 903 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
.+... ...++.++|++|++.+++ .||.||+.+...... ....+..++.+.++++.+++.+........ ....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87531 234567999999998887 899999987643221 112233345677888888875321111111 1457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999975 699999999986 57888999999997 688
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=325.03 Aligned_cols=216 Identities=22% Similarity=0.282 Sum_probs=176.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc-e--EEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~-~--~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899987763 246999999999999999999999999999999999975422 1 479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++ .|++||+.+....+. ..+..+.++.++++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999987654331 1223334456788899998843 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 467999999999999999999999999999999999999999999999865 699999999997 6888999999998
Q ss_pred C----CcEEEEECCC
Q 047682 1054 R----GGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~----Gg~~~y~G~~ 1064 (1425)
+ .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4789999986
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=319.73 Aligned_cols=201 Identities=24% Similarity=0.412 Sum_probs=168.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHH
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998765332 357999999988899999999998
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
++... ... . . ......++++++.+||++..++.+. .|||||
T Consensus 94 ~~~~~-~~~--~------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--L------N-------------------------AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred ccccc-ccC--C------C-------------------------HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 75321 000 0 0 0012245678899999877776654 599999
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecC
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGP 377 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 377 (1425)
||||+||+|++.+|++++|||||+|||..++..+.+.|+++.+..+.| ++.++|+..++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT-LLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999986644444 5557888889999999999999999999999
Q ss_pred hhHHH
Q 047682 378 REHVL 382 (1425)
Q Consensus 378 ~~~~~ 382 (1425)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88775
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=330.48 Aligned_cols=205 Identities=19% Similarity=0.304 Sum_probs=166.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC----C----CccceEEEEccCCC-
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE----F----VPQRTAAYISQHDV- 205 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 205 (1425)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4899999999999999999999999999999999999998 9999999988642 1 12457999999863
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 284 (1425)
.+...||+||+.|+....+.. . .+....++.+++.++|+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------K------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 234569999999864321100 0 01112356678889995 455544
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.++||++
T Consensus 148 ~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 P-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK-KRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999875434 45555788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=333.15 Aligned_cols=220 Identities=19% Similarity=0.243 Sum_probs=178.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.++++|+++.+.. +.+.+|+|+|++|++||++||+|||||||||||++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5899999987741 224699999999999999999999999999999999997531 23579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCccccccccCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVD-SETRRMFLEEIMELVELNPLRQSLVGLPGV 976 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~-~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 976 (1425)
.++.. ...++.++||+|++.+++ .|++||+.|..... ..+ .+..++.++++++.++|.+-.++.++.. .
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 98642 234667999999998874 79999999864321 122 2223345678888888854333333332 5
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|+|++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 799999999986 47778999999996 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|++
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 88999986
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=325.38 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999988 999999998765432 235699999998888889
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||.||+.++..-.. ..+ ... .......++++++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~~----------------~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLW----------------GRL------------SAEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hhc----------------cCC------------CHHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999998631000 000 000 0011224567888999987666655
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++++.++|+.+++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~-~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QG-KTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHhcCEEEEEECC
Confidence 45999999999999999999999999999999999999999999999864 34 45555788888999999999999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
+++..|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987763
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=325.43 Aligned_cols=213 Identities=22% Similarity=0.312 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCCC---ccceEEEEccCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 208 (1425)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998741 013899999999875432 2467999999988889
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.+||+||+.++.+..+... .. .+....++++++.+||.+..+... +.
T Consensus 96 ~~tv~enl~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~ 142 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK--------SK------------------------KELQERVRWALEKAQLWDEVKDRL-DA 142 (250)
T ss_pred CCcHHHHHHHHHHhccccC--------CH------------------------HHHHHHHHHHHHHcCCCcchhhhh-cC
Confidence 9999999998643221000 00 011234567888899864211111 23
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+..++.+.+|++++|+
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--D-MTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEEEEEE
Confidence 3456999999999999999999999999999999999999999999999843 4 455667888888899999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+.+++.
T Consensus 220 ~G~i~~~g~~~~~~ 233 (250)
T PRK14247 220 KGQIVEWGPTREVF 233 (250)
T ss_pred CCeEEEECCHHHHH
Confidence 99999999988774
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=329.00 Aligned_cols=204 Identities=22% Similarity=0.352 Sum_probs=166.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEccCCC-C
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYISQHDV-H 206 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~-~ 206 (1425)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 5999999999999999999999999999999999999998 999999999875421 2357999999852 3
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-cccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV-CADTMV 285 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~v 285 (1425)
+...||+||+.+.....+.. . .+....++.+++.+||.. ..+..+
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (280)
T PRK13649 98 LFEETVLKDVAFGPQNFGVS----------Q------------------------EEAEALAREKLALVGISESLFEKNP 143 (280)
T ss_pred hccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhCCc
Confidence 44579999998864321100 0 011223567888899963 445444
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|+++
T Consensus 144 -----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 144 -----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999864 3 4455557788888999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 217 VLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988774
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=320.29 Aligned_cols=200 Identities=27% Similarity=0.435 Sum_probs=160.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCC--CCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHI--GEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 211 (1425)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999998 9999999987642 346799999986553 3489
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.++..... ..++. + ..+....++.+++.+||++..++.++
T Consensus 87 v~e~l~~~~~~~~--~~~~~--------------~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~----- 131 (213)
T cd03235 87 VRDVVLMGLYGHK--GLFRR--------------L--------------SKADKAKVDEALERVGLSELADRQIG----- 131 (213)
T ss_pred HHHHHHhcccccc--ccccC--------------C--------------CHHHHHHHHHHHHHcCCHHHHhCCcc-----
Confidence 9999988542110 00000 0 00112345678899999876666554
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++++.++|+..++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 5999999999999999999999999999999999999999999999865 3 445566788888999999999999886
Q ss_pred EEEec
Q 047682 372 IVFQG 376 (1425)
Q Consensus 372 iv~~G 376 (1425)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=324.79 Aligned_cols=208 Identities=28% Similarity=0.434 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 34699999998778889
Q ss_pred CHHHHHHhhhh-hcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 211 TVRETLAFSAR-CQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 211 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
||+||+.++.. .... + . .+ ..+....++.+++.+||.+..++.++
T Consensus 91 tv~e~l~~~~~~~~~~---~-------~-------~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (256)
T TIGR03873 91 TVRDVVALGRIPHRSL---W-------A-------GD--------------SPHDAAVVDRALARTELSHLADRDMS--- 136 (256)
T ss_pred CHHHHHHhcchhhhhh---c-------c-------CC--------------CHHHHHHHHHHHHHcCcHhhhcCCcc---
Confidence 99999988521 0000 0 0 00 00112245678889999776666554
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ . +++|+.++|+..++.+++|+|++|++
T Consensus 137 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 137 --TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999864 3 45566678888899999999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|+++..|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999987763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=286.82 Aligned_cols=197 Identities=27% Similarity=0.402 Sum_probs=168.5
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---c----cccceEEEeecCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---E----TFARISGYCEQNDI 922 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~----~~~~~~gyv~Q~~~ 922 (1425)
....||++|++.|++||-+||+|||||||||||-+|+|...+ .+|+|.+.|++..+ + -..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 457899999999999999999999999999999999997653 58999999988543 1 23467999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEE
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illL 1002 (1425)
+.|++|..||+.....++.... ...++...+.++.+||.+-.+.. +.+|||||+|||+||||++..|+|||-
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999998887774322 22234467889999998766655 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 1003 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 1003 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
||||-+||..+...|.+.|-.+.++ |.|.|++||||. +...|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 9999999999999999999888654 999999999985 6788999999997 5654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=356.42 Aligned_cols=218 Identities=25% Similarity=0.323 Sum_probs=182.7
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++++++ ++.+|+|+|++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 77888887763 24699999999999999999999999999999999997653 4799999998753
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 907 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ..++.+||++|++.+++.+||+|++.+....+.. ...+..+.++.++++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245689999999899999999999886432211 11223334456889999999988777664 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|.|||+++|+++ ++.+.+|++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57789999999997 688889
Q ss_pred CCCCC
Q 047682 1062 GPLGR 1066 (1425)
Q Consensus 1062 G~~~~ 1066 (1425)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 98754
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=328.14 Aligned_cols=216 Identities=24% Similarity=0.310 Sum_probs=179.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++. .....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 3788999887631 112359999999999999999999999999999999999765 3579999999875
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 567789999998764322 223444456688999999998877665 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999863 4 46999999997 57788
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=326.29 Aligned_cols=205 Identities=20% Similarity=0.286 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 209 (1425)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999998 999999999876432 2467999999863 6778
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
.||.||+.++....+.. . .+....++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------R------------------------EEMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998764321110 0 011224677888999987666554
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|+.+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT-VLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHH-hCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999987543445 555778887775 6999999999
Q ss_pred CeEEEecChhHHH
Q 047682 370 GQIVFQGPREHVL 382 (1425)
Q Consensus 370 G~iv~~G~~~~~~ 382 (1425)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=324.27 Aligned_cols=211 Identities=19% Similarity=0.319 Sum_probs=166.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
.+|+|+|++|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5899999999999999999999999999999999998741 01289999999987532 1246799999987777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+. ||+||+.++....+.... + .+....++.+++.+||.+...... +
T Consensus 113 ~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 158 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL-H 158 (267)
T ss_pred CC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 64 999999986543211000 0 011223567888889864211111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..++.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +. +|+.++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~-tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NY-TIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CC-eEEEEEcCHHHHHhhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999854 44 5555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|+++.+|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 236 HLGNLVEVGDTEKMF 250 (267)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=325.79 Aligned_cols=216 Identities=22% Similarity=0.301 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--------ccceEEEEccCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--------PQRTAAYISQHDV 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~ 205 (1425)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|+++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45999999999999999999999999999999999999875223699999998875321 1356999999988
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+++.+||+||+.++..... . ...... . . ...+.+..++.+++.+||++..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-------~~~~~~--~--~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-------FWRTCF--S--W-------------FTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-------chhhhc--c--c-------------ccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8999999999987632100 0 000000 0 0 00011234677899999987776655
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+ .|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+++|+|+
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4 599999999999999999999999999999999999999999999987543 4555557888888999999999
Q ss_pred EEcCCeEEEecChhHH
Q 047682 366 LISEGQIVFQGPREHV 381 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~ 381 (1425)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=324.21 Aligned_cols=210 Identities=19% Similarity=0.283 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|+..++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2111289999999887431 1246799999987777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ .||+||+.++........ . .+....++++++.+|+........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS---------R------------------------AEMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC---------H------------------------HHHHHHHHHHHHHcCCChhhHHHH-h
Confidence 6 899999988643211000 0 011224567788888743111111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+....||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+..++.+++|++++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--D-YTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999842 4 45566788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988774
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=320.68 Aligned_cols=201 Identities=24% Similarity=0.300 Sum_probs=166.0
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc--eEEEEEEEcCccCCcccc-cceEEEeecCCC--CCCCCC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNIKISGYPKKQETF-ARISGYCEQNDI--HSPNVT 928 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 928 (1425)
+|+|+|++|++|++++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999976531 158999999987643322 357899999974 557789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc---cccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 047682 929 VYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN---PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1425)
Q Consensus 929 v~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~---~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP 1005 (1425)
+.|++.+...... ...+..++.++++++.+++. +..+.. +..||||||||++||++|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 11233445688999999997 344443 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1006 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999987 678888875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=319.91 Aligned_cols=204 Identities=27% Similarity=0.446 Sum_probs=172.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+|+|+|++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765332 467999999988898999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.++....+.. . .+....++++++.+||.+..++.+. .||
T Consensus 91 ~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 131 (235)
T cd03299 91 NIAYGLKKRKVD----------K------------------------KEIERKVLEIAEMLGIDHLLNRKPE-----TLS 131 (235)
T ss_pred HHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 998864321100 0 0112235568889999877776654 599
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
|||||||+||+|++.+|++++|||||+|||..++..+.+.|++++...+.| ++.++|+.+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT-VLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986544444 5556788888999999999999999999
Q ss_pred ecChhHHH
Q 047682 375 QGPREHVL 382 (1425)
Q Consensus 375 ~G~~~~~~ 382 (1425)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.26 Aligned_cols=216 Identities=25% Similarity=0.276 Sum_probs=174.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCce---EEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~---~~G~i~i~g 902 (1425)
-+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788887663 2469999999999999999999999999999999999754322 379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 1345679999999999999999999987643221 1122333455667777777642 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999987 5777899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 7 678888875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=317.20 Aligned_cols=209 Identities=23% Similarity=0.335 Sum_probs=174.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++. ..+.+.+|+|+|+++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~---------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH---------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC---------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 567888776531 0112579999999999999999999999999999999999765 35899999998753
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. ...++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 2 1245679999999999999999999988654321 123444556789999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|++|
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g 217 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999876 4899999999985 45789999999874
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=303.17 Aligned_cols=213 Identities=21% Similarity=0.336 Sum_probs=188.4
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCC
Q 047682 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHI 207 (1425)
Q Consensus 128 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~ 207 (1425)
+++.+++.+++|+||.++||+|.+++|||||||||.+++|+|+++|+ +|+|+++|.+++... ..+|||.|.+.-++
T Consensus 9 tK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy 84 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLY 84 (300)
T ss_pred hhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccC
Confidence 34456778999999999999999999999999999999999999998 999999999886543 35799999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||.|.|.|-|+++|+.. ++.....+..|+.+++......+|
T Consensus 85 ~k~tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~kI-- 128 (300)
T COG4152 85 PKMTVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTKKI-- 128 (300)
T ss_pred ccCcHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccchH--
Confidence 99999999999999988632 223445778999999988776555
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..||-|.+|++-+-.+++++|++++||||+||||+.++..+-+.+.++.. .+++|+..+|.++.+.++||++++|
T Consensus 129 ---k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL 203 (300)
T COG4152 129 ---KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLML 203 (300)
T ss_pred ---HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhhee
Confidence 46999999999999999999999999999999999999999999999865 3566666789999999999999999
Q ss_pred cCCeEEEecChhHHHHHH
Q 047682 368 SEGQIVFQGPREHVLEFF 385 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~~~F 385 (1425)
++|+.|.+|+.+++..-|
T Consensus 204 ~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 204 KKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCceEEeccHHHHHHhc
Confidence 999999999999998744
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=316.34 Aligned_cols=195 Identities=23% Similarity=0.359 Sum_probs=163.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHH
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999998765432 367999999988888999999998
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
++...... . . .+.+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~~-~--------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLK-L--------T-------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred cccccccC-c--------c-------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 75321100 0 0 001224567899999987776655 4699999
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEec
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQG 376 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G 376 (1425)
|||++||+||+.+|++++|||||+|||..++..+.+.|+++++..+ .+|+.++|+..++.++||++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK-MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999999865434 44555788898999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=324.82 Aligned_cols=219 Identities=22% Similarity=0.256 Sum_probs=176.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 488999988763 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ..+++.++|++|++.+++. |++||+.+....+. ....+..++.++++++.+++.+........ .+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Ccc
Confidence 87542 1345679999999988876 99999987654321 112223345578888988886421111111 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|+++ ++.+.+|++++|++ |+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 244 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GK 244 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 799999999986 57788999999997 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 245 i~~~g~~ 251 (272)
T PRK14236 245 LVEYGDT 251 (272)
T ss_pred EEecCCH
Confidence 8888875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.28 Aligned_cols=211 Identities=18% Similarity=0.282 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++.+. ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 01389999999987532 124579999998777
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++ .||+||+.++.+..+... .++....++++++.++|.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------------------------------KKVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCCchhhhhh-
Confidence 76 699999998643211000 0011234566788888864322222
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
++.++.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--N-YTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhcCEEEE
Confidence 244567999999999999999999999999999999999999999999998842 4 4556577888899999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=391.17 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------------------
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--------------------------------------- 174 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------------------- 174 (1425)
.+||+|+|++|+||+.+||+||||||||||+++|+|+++|+
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999982
Q ss_pred ------------CCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHh
Q 047682 175 ------------LKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 239 (1425)
Q Consensus 175 ------------~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e 239 (1425)
...+|+|++||+++++... ++.++||+|++.+| +.|++|||.++..
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~------------------ 1321 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE------------------ 1321 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC------------------
Confidence 0138999999999987664 57899999976655 7899999999731
Q ss_pred hhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecC
Q 047682 240 KDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEI 319 (1425)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEp 319 (1425)
+.+.+++.+|+...+. .+.+ -.|++.+||.||+.+. .||||||||++|||||+++|+||+||||
T Consensus 1322 -------~at~eeI~~A~k~A~l-----~~fI---~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1322 -------DATREDVKRACKFAAI-----DEFI---ESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred -------CCCHHHHHHHHHHcCC-----HHHH---HhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1122233333322111 1222 3588999999998765 5999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC----CeEE-EecChhHHHH
Q 047682 320 STGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE----GQIV-FQGPREHVLE 383 (1425)
Q Consensus 320 tsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~----G~iv-~~G~~~~~~~ 383 (1425)
||+||+.++..|.+.|+++....++|+|+ +.|.. ++.+.||+|++|++ |+++ ++|+++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIi-IaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIIT-IAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEE-EechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999999999999874223566666 45544 56788999999999 9955 8999999863
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.35 Aligned_cols=219 Identities=20% Similarity=0.233 Sum_probs=174.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 377888887763 246999999999999999999999999999999999975431 2369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+....... ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1345679999999988875 999999887543311 1122234556778888887532111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57788999999986 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=356.63 Aligned_cols=218 Identities=26% Similarity=0.316 Sum_probs=181.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 70 (510)
T PRK09700 6 ISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYN 70 (510)
T ss_pred EEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECC
Confidence 78889887763 2469999999999999999999999999999999999765 34799999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHhhcc--C-C-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 907 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLR--L-P-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr--~-~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
.. ..++.+||++|++.+++.+||+||+.++.... . . ...+.++.++.++++++.+||.+..+..+ ..
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----AN 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hh
Confidence 31 12346899999998999999999998753210 0 0 01123344566889999999988777664 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+.+.+|++++|++ |++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i 223 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSS 223 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999888999999999986 57788999999996 678
Q ss_pred EEECCCCC
Q 047682 1059 IYVGPLGR 1066 (1425)
Q Consensus 1059 ~y~G~~~~ 1066 (1425)
++.|+..+
T Consensus 224 ~~~g~~~~ 231 (510)
T PRK09700 224 VCSGMVSD 231 (510)
T ss_pred eeecchhh
Confidence 89998753
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=321.84 Aligned_cols=213 Identities=23% Similarity=0.297 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL--DPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 207 (1425)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 45999999999999999999999999999999999995 576 9999999998765432 23489999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV-CADTMVG 286 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg 286 (1425)
+.+|++|++.+..+....... +. ..+ ..+....++.+++.+||+. ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~----------~~------~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG----------EE------PLD-----------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc----------cc------ccc-----------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999886432110000 00 000 0011234677899999973 4554443
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-cCeEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-FDDII 365 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~-~D~vi 365 (1425)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999854 34 4555578888888888 89999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.67 Aligned_cols=219 Identities=25% Similarity=0.263 Sum_probs=175.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478889887763 246999999999999999999999999999999999964311 1379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++.+....... ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87542 2345679999999988875 99999998754431 11223344567888888887532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 57788999999997 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 8888875
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.87 Aligned_cols=215 Identities=25% Similarity=0.266 Sum_probs=174.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc-
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP- 904 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~- 904 (1425)
-++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 378889888763 2369999999999999999999999999999999999765 347999999986
Q ss_pred ----CCcc---c----ccceEEEeecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 047682 905 ----KKQE---T----FARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSL 970 (1425)
Q Consensus 905 ----~~~~---~----~~~~~gyv~Q~~~--~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 970 (1425)
.... . .++.++|++|+.. +.+.+|+.||+.+...... .....+.++.+.++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5678899999976432111 1122334556788999999963 44443
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEE
Q 047682 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 971 ~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEeCCcEEEEECCC
Q 047682 1050 FLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1050 ~~l~~Gg~~~y~G~~ 1064 (1425)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99997 688898875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.89 Aligned_cols=210 Identities=18% Similarity=0.287 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCcccEEEECCccCCCCC-----ccceEEEEccCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK---LDPSLKLSGRVTYNGHNMDEFV-----PQRTAAYISQHDV 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 205 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|. .++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3599999999999999999999999999999999997 3331 12899999999875421 2357999999887
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
.++ .||+||+.++.+..+... . ......++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKD----------N-----------------------AFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCc----------H-----------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 699999988643321100 0 001224567888899864322222
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--D-YTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhCCEEE
Confidence 234456999999999999999999999999999999999999999999999842 4 455557888889999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.34 Aligned_cols=213 Identities=22% Similarity=0.270 Sum_probs=173.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc--eEEEEEEEcCc
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNIKISGY 903 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~--~~~G~i~i~g~ 903 (1425)
.++++|+++.++ +.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578899887651 25899999999999999999999999999999999976531 15799999998
Q ss_pred cCCcccc-cceEEEeecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc---ccccccCCCCCC
Q 047682 904 PKKQETF-ARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP---LRQSLVGLPGVS 977 (1425)
Q Consensus 904 ~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~~g~~~~~ 977 (1425)
+...... ++.++|++|++. +.+..|+.+++.+.+.... ... .++.++++++.++|.+ ..+.. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7643222 356999999974 4567899999876443221 111 2245788999999976 23433 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 57788999999986 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 78888875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.07 Aligned_cols=211 Identities=19% Similarity=0.316 Sum_probs=166.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCCC-----ccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEFV-----PQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 206 (1425)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998751 013899999999875421 24679999999877
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++ +|++||+.|.....+... . .+....++.+++.+||........
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKD---------K------------------------KELDKIVEWALKKAALWDEVKDDL- 141 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 76 899999998653321100 0 011223456778888742110111
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+...+.||||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+ +. +++.++|+..++.+++|++++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~-tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EY-TIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEEcCHHHHHHhcCEEEE
Confidence 233456999999999999999999999999999999999999999999999854 44 455577888889999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 219 FLMGDLIEFNKTEKIF 234 (251)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.24 Aligned_cols=212 Identities=19% Similarity=0.292 Sum_probs=168.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++ |+...+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3111289999999987532 124679999999888
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.++.+..+... . .+....++++++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------R------------------------SEADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 999999999987643211000 0 001223567788888854211111
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+..++.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+.+++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999854 4 4556578888899999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+.+++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=326.10 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=174.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~-~~~~G~i~i~g 902 (1425)
.+.++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578999988763 2359999999999999999999999999999999999632 1 02579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN----PLRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++. ||.||+.+....+. ..+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988875 99999998654321 112233345677888888874 223332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 7 688888875
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=321.06 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=176.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--c-eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~--~-~~~G~i~i~g 902 (1425)
.+..+++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ + +.+|+|.++|
T Consensus 8 ~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 8 VMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred eEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 46667766654 235799999999999999999999999999999999997542 1 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ..+++.++|++|++.++ .+|+.||+.+....+. . ....++.++++++.++|.+..+...+ ...+
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87532 23456799999998877 5999999988754331 1 12234567889999998643322221 1256
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe----
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK---- 1053 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~---- 1053 (1425)
.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~ 226 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDIS 226 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 799999999999999999999999999999999999999999999986 4799999999986 5778999999997
Q ss_pred ---CCcEEEEECCC
Q 047682 1054 ---RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ---~Gg~~~y~G~~ 1064 (1425)
++|+++..|+.
T Consensus 227 ~~~~~G~i~~~g~~ 240 (261)
T PRK14263 227 QGTRTGYLVEMGPT 240 (261)
T ss_pred cccCCceEEEeCCH
Confidence 45899999985
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=317.66 Aligned_cols=195 Identities=22% Similarity=0.364 Sum_probs=162.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-----CccceEEEEccCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 208 (1425)
.++|+|+|++++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 45999999999999999999999999999999999999998 99999999987421 12467999999988888
Q ss_pred CCCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 209 EMTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
.+||+||+.++... .+.. ..+....++.+++.+|+++..++.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------------------------------KAEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 99999999886421 1100 0011224567888999987666555
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++++.++|+..++.+++|++++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 45999999999999999999999999999999999999999999999865 34 44555788888999999999999
Q ss_pred cCCeE
Q 047682 368 SEGQI 372 (1425)
Q Consensus 368 ~~G~i 372 (1425)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=324.89 Aligned_cols=207 Identities=20% Similarity=0.249 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCC--CCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDV--HIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 208 (1425)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999998 9999999998753221 246999999864 567
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccC
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVGD 287 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~ 287 (1425)
.+||.|++.+..+.... ... .+....++.+++.+||. +..++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTD---------LEP------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccC---------CCH------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999876432110 000 01122456789999994 5555444
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.++||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG-ISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEeCCHHHHHHhcCEEEEE
Confidence 46999999999999999999999999999999999999999999999875434 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.85 Aligned_cols=219 Identities=23% Similarity=0.285 Sum_probs=177.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478899988773 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 903 YPKKQ----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 903 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
.+... ...++.++|++|++.+++ .|++||+.+..... ...+.++.++.+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234567899999988887 89999998764322 112334444556788899998653221111 12467
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57889999999996 688
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 898885
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=313.97 Aligned_cols=202 Identities=22% Similarity=0.295 Sum_probs=171.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+++++|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 478899887652 23699999999999999999999999999999999997653 479999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.....++.++|++|++.+++.+|++||+.+....+. .. .++.++++++.++|.+..+..+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988898999999987654321 11 2234678899999987766653 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
|++||++|+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|||+++|+++ ++.+.+|++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998888999999999997 68899999999863
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=323.87 Aligned_cols=215 Identities=20% Similarity=0.252 Sum_probs=173.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~-~~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478999988763 2469999999999999999999999999999999999532 1 13579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++. |++||+.+..... ........++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 1345679999999988875 9999998764322 11122233455778888888852 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778999999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 688898875
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.13 Aligned_cols=215 Identities=26% Similarity=0.321 Sum_probs=174.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--Cc-eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~~-~~~G~i~i~g 902 (1425)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 378889888763 2469999999999999999999999999999999999754 11 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 234567999999988776 799999987643221 1122333456788899999852 22322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5778899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 677888875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=319.11 Aligned_cols=203 Identities=23% Similarity=0.264 Sum_probs=166.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCcccEEEECCccCCCCCc-cceEEEEccCCC--CC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP----SLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDV--HI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~ 207 (1425)
++|+|+|+++++||+++|+||||||||||+++|+|.++| + +|+|.++|++++.... ++.++|++|++. +.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccC
Confidence 489999999999999999999999999999999999988 6 9999999998754332 257999999864 44
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc---ccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV---CADTM 284 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~~t~ 284 (1425)
+..|+.+++.+.++..+.. .....++.+++.+||.+ ..++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (254)
T PRK10418 94 PLHTMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAARVLKLY 137 (254)
T ss_pred ccccHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhhcC
Confidence 6679999987643221100 00123566888899975 23333
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.+.|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+.+|++
T Consensus 138 -----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 138 -----PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR-ALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999987643 445555788888899999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 212 AVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999988774
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=313.66 Aligned_cols=224 Identities=22% Similarity=0.297 Sum_probs=181.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC-C-c-eEEEEEEEcCc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YITGNIKISGY 903 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~-~-~-~~~G~i~i~g~ 903 (1425)
++.+|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4567777666432 123579999999999999999999999999999999999765 2 3 56789999998
Q ss_pred cCC---ccc----ccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCC
Q 047682 904 PKK---QET----FARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974 (1425)
Q Consensus 904 ~~~---~~~----~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 974 (1425)
++- ++. +.+.++|++|++ .+.|.+||.+.+.-......... .+++.++.+.++|+.++|.+-....-.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~-- 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKS-- 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhh--
Confidence 642 221 235799999996 56799999988876554332111 355567778999999999864333222
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
...+|||||||||.||.||+.+|++|+.||||++||...+++|++.|+++.+ .|.|+|++|||.. -+.+++|||.||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999986 5999999999997 4889999999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
. |++|..||.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 6 799999996
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=318.81 Aligned_cols=209 Identities=19% Similarity=0.281 Sum_probs=167.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccEEEECCccCCCCC---ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD---PSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~ 207 (1425)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|+++|+++.+.. .++.++|++|++.++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 359999999999999999999999999999999999975 45 899999999886543 245799999988777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ .||+||+.++....+... .. ......++.+++.+||........ +
T Consensus 92 ~-~tv~eni~~~~~~~~~~~-------------------~~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 137 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIK-------------------NK-------------DEEEALVVDCLQKVGLFEEVKDKL-K 137 (246)
T ss_pred c-ccHHHHhhhHHhhcCccc-------------------Ch-------------HHHHHHHHHHHHHcCCChhhhHHh-c
Confidence 6 699999998643321100 00 011223567888899853211111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+..+.|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++.+ + ++++.++|+.+++.+.+|++++|
T Consensus 138 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--N-LSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHHHHHhhCcEEEEE
Confidence 34467999999999999999999999999999999999999999999998743 4 45565788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 215 HLGELIEFGESKEFF 229 (246)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=312.06 Aligned_cols=199 Identities=23% Similarity=0.303 Sum_probs=164.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45677776652 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 907 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
. ..+++.++|++|++.+++.+|+.|++.+....+. . ..++.++++++.+||.+..+.. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999988999999999988654321 1 1234578899999998776665 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l 1052 (1425)
||++||++|+++|++++|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.-+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998877899999999986 354444566655
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=322.40 Aligned_cols=225 Identities=25% Similarity=0.331 Sum_probs=178.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++... ..+. ..++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888887763100 0000 013579999999999999999999999999999999999765 35899999998653
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 047682 907 Q------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVS 977 (1425)
Q Consensus 907 ~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 977 (1425)
. ...++.++|++|+. .+.+..|+.|++.+..... ...+..+....++++++.+++. +..+.. ..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12356799999997 3567899999987643211 1223344455688999999996 455554 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57778999999986 6
Q ss_pred EEEEECCCCC
Q 047682 1057 YEIYVGPLGR 1066 (1425)
Q Consensus 1057 ~~~y~G~~~~ 1066 (1425)
++++.|+..+
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 8889998643
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=311.73 Aligned_cols=184 Identities=27% Similarity=0.336 Sum_probs=159.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ--ETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 4699999999999999999999999999999999998653 47999999987532 2345679999999988889999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
+||+.+.... . .++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999875311 1 134578899999998776665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 047682 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l 1052 (1425)
|+.++..+++.|+++.++|+|+|+++|++. +..+.+|+++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998877999999999986 577889999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=355.26 Aligned_cols=209 Identities=23% Similarity=0.359 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-G 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCccccc-c
Confidence 35899999999999999999999999999999999999998 9999999999876543 468999999877765 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|++||+.++.. +.+.+.+.+++... ..++.++. |++..||.+|+.+
T Consensus 407 ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~------~~~~~i~~--l~~gl~t~~~~~g- 452 (544)
T TIGR01842 407 TVAENIARFGE-------------------------NADPEKIIEAAKLA------GVHELILR--LPDGYDTVIGPGG- 452 (544)
T ss_pred cHHHHHhccCC-------------------------CCCHHHHHHHHHHh------ChHHHHHh--CccccccccCCCc-
Confidence 99999985421 00111111111110 11233333 4556789998754
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+.||||||||++||||++++|++++|||||+|||+.++..+.+.|+++.. .++|+|+ ++|+.+ ..+.||+|++|++|
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~-ith~~~-~~~~~d~i~~l~~G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVV-ITHRPS-LLGCVDKILVLQDG 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEE-EeCCHH-HHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998742 3456666 455544 56789999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
++++.|+++++.+
T Consensus 530 ~i~~~g~~~~l~~ 542 (544)
T TIGR01842 530 RIARFGERDEVLA 542 (544)
T ss_pred EEEeeCCHHHHhh
Confidence 9999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=319.00 Aligned_cols=219 Identities=25% Similarity=0.305 Sum_probs=172.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--Cc-eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~~-~~~G~i~i~g 902 (1425)
-++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 378889887763 2469999999999999999999999999999999999642 11 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++......... ..+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLH-ESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHh-cCcc
Confidence 87531 234567999999988887 6999999886543311 1122223456677888876421111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 589999999986 57788999999986 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=318.63 Aligned_cols=210 Identities=21% Similarity=0.344 Sum_probs=165.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++..+
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 5212389999999987431 1246799999988777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ +||+||+.++....+... + ......++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKD--K-------------------------------QVLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCc--H-------------------------------HHHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 899999998643221100 0 001223456777787743211111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.++.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+.+++.+.+|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34456999999999999999999999999999999999999999999999853 4 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=352.17 Aligned_cols=220 Identities=23% Similarity=0.353 Sum_probs=180.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56778877662 24699999999999999999999999999999999997653224899999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCcccc-ccccCCCCCCcCC
Q 047682 907 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-DVDSETRRMFLEEIMELVELNPLR-QSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~lS 980 (1425)
.. ..++.+||++|++.+++.+||+|++.+....+... ....++.++.++++++.++|.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 12356899999998899999999998764332111 122334456688999999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57788999999997 57888
Q ss_pred ECCCCC
Q 047682 1061 VGPLGR 1066 (1425)
Q Consensus 1061 ~G~~~~ 1066 (1425)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 888753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.21 Aligned_cols=192 Identities=28% Similarity=0.437 Sum_probs=160.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEccCCCCCCCCC
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 211 (1425)
|+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999998 999999998865311 2457999999988888999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++||+.+..... . . ......++.+++.+||++..++.+ +
T Consensus 92 ~~~~l~~~~~~~---~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRK---R---------N------------------------REDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhC---C---------H------------------------HHHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 999998753210 0 0 001123567888999986666544 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN-IPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999876434 455557888889999999999999999
Q ss_pred EEEec
Q 047682 372 IVFQG 376 (1425)
Q Consensus 372 iv~~G 376 (1425)
++++|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=320.20 Aligned_cols=210 Identities=20% Similarity=0.326 Sum_probs=165.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|++|++||+++|+||||||||||+++|+|.++ |+...+|+|+++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 58999999999999999999999999999999999987 3212389999999987531 1245799999998777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+. ||+||+.++.+..+... . .+....++.+++.+|+.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKN---------K------------------------KKLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 99999988643221000 0 011223456778888753211111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
...+.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.. ++ +++.++|+.+++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KY-TIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CC-EEEEEEcCHHHHHHhCCEEEEE
Confidence 34456999999999999999999999999999999999999999999999843 44 4555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.96 Aligned_cols=211 Identities=20% Similarity=0.324 Sum_probs=166.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 59999999999999999999999999999999999987410 1289999999887421 1246799999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+||+.++....+... . ......++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRN---------K------------------------KDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 99999999988653221000 0 011224566788888842111111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..+..|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++++ ++ +|+.++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DY-TIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CC-EEEEEecCHHHHHHhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999853 44 5555788888999999999999
Q ss_pred c------CCeEEEecChhHHH
Q 047682 368 S------EGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~------~G~iv~~G~~~~~~ 382 (1425)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 6 79999999988774
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=358.74 Aligned_cols=207 Identities=24% Similarity=0.382 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|++++||+.++|+|+||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.++ +.|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccc-ccc
Confidence 4899999999999999999999999999999999999998 9999999999887653 47899999976655 669
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++|||.++.. +.+.+.+.+++...+ .+..++ .+++..||.+|+.+ +
T Consensus 425 i~~Ni~~~~~-------------------------~~~d~~i~~al~~~~------l~~~i~--~lp~gldt~i~~~g-~ 470 (588)
T PRK13657 425 IEDNIRVGRP-------------------------DATDEEMRAAAERAQ------AHDFIE--RKPDGYDTVVGERG-R 470 (588)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHHH--hCcccccchhcCCC-C
Confidence 9999998521 111111222211110 111122 25677899998764 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++|||||+++|++++||||||+||+.++..|.+.|++..+ ++|+|+ ++|+. +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIi-itHr~-~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFI-IAHRL-STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEE-EEecH-HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999988642 566666 45544 4568899999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=312.32 Aligned_cols=199 Identities=22% Similarity=0.331 Sum_probs=165.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999998 999999999875432 2467999999988899999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.+...... .. + .+....++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~------------------~---------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KL------------------N---------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Cc------------------c---------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987532100 00 0 001223567889999987666554 4699
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.+.. +++|+.++|+.+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER-QRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 999999999999999999999999999999999999999999986533 4555557888888899999999999999998
Q ss_pred ecC
Q 047682 375 QGP 377 (1425)
Q Consensus 375 ~G~ 377 (1425)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=313.95 Aligned_cols=192 Identities=26% Similarity=0.351 Sum_probs=159.2
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
+++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 34679999999999999999999999999999999999765 358999999975321 1112334578999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
+||+.+....+ ..+..+.++.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99998765432 1233444556788999999988777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
|+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998877899999999986 57778999999986 6776654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=363.37 Aligned_cols=210 Identities=27% Similarity=0.418 Sum_probs=174.6
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+|+++.+. +++++|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986542 1246999999999999999999999999999999999976 3 37999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 974 (1425)
..+ +.+++.++||+|++.++.. |++||+.++. ++.++++ ++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~-----~~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhcccccccccccC
Confidence 653 4567889999999988864 9999998752 2344433 556666666553 236667755
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 483 -G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 -AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999885 5899999999985 5678999999986
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 688888874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=323.03 Aligned_cols=209 Identities=25% Similarity=0.384 Sum_probs=161.0
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 46777766531 12469999999999999999999999999999999999765 347999999986532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCccccccccCCCCCC
Q 047682 908 ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRM-----FLEEIMELV--ELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 908 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~~g~~~~~ 977 (1425)
..+++.++|++|++.+++ .||.||+.+... ........+ ..+++++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567999999987764 699999976421 111111110 112233333 333222222 46
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++ +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 899999999996 35 56999999997 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 8898875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=352.53 Aligned_cols=211 Identities=22% Similarity=0.319 Sum_probs=179.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 378899988763 2469999999999999999999999999999999999765 3479999999875
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH
Q 047682 906 KQE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 981 (1425)
... . .++.+||++|++.+++.+||+|++.+... . ....++.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 421 1 22458999999999999999999987531 1 1233456789999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 57788999999997 678899
Q ss_pred CCCC
Q 047682 1062 GPLG 1065 (1425)
Q Consensus 1062 G~~~ 1065 (1425)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 9874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.69 Aligned_cols=218 Identities=24% Similarity=0.390 Sum_probs=174.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 478899988763 12469999999999999999999999999999999999865 3589999999875
Q ss_pred CcccccceEEEeecCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 906 KQETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~--~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997652 235788988653210000 01111223445788899999988777654 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577899999777 5 6888999
Q ss_pred CCC
Q 047682 1063 PLG 1065 (1425)
Q Consensus 1063 ~~~ 1065 (1425)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=311.48 Aligned_cols=202 Identities=25% Similarity=0.297 Sum_probs=181.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc------cc-ccceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ------ET-FARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~-~~~~~gyv~Q~~~~~ 924 (1425)
..-++|+|++|+.||++.|||-||||||||+++|.+... +..|+|.++|.++.. .. .++.++.|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 346899999999999999999999999999999999876 458999999987532 12 345789999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDE 1004 (1425)
|+.||.||..|+..++ .+++++++++..+.++.+||..+.+.. +.+||||+||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 577889999999999999999999887 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1005 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|+|.|||--+.++++-|.++.++ ++|||++|||.. |.+.+-|||.+|++ |+++-.|.+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCHH
Confidence 99999999999999999888655 899999999997 78899999999985 7999999874
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=322.21 Aligned_cols=215 Identities=22% Similarity=0.231 Sum_probs=172.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~-~~~~G~i~i~g 902 (1425)
-++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 488999988763 2358999999999999999999999999999999999753 1 13589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN----PLRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 973 (1425)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87531 234567999999988877 499999988653321 112223344567777777543 222322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 799999999986 5778899999999
Q ss_pred CCcEEEEECCC
Q 047682 1054 RGGYEIYVGPL 1064 (1425)
Q Consensus 1054 ~Gg~~~y~G~~ 1064 (1425)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 7 678888875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=322.08 Aligned_cols=206 Identities=20% Similarity=0.315 Sum_probs=163.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcccEEEECCccCCCC-----CccceEEEEccCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-----PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHD 204 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 204 (1425)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 58999999999999999999999999999999999987 35 99999999886421 1235799999998
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.+++ .||+||+.+++...+.. . +....++.+++.+++....+..
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~----------~-------------------------~~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYT----------G-------------------------DMDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCc----------H-------------------------HHHHHHHHHHHHhCCcchhhhh
Confidence 7777 59999999875432110 0 0011234566677664211111
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
. +..++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.++||++
T Consensus 148 ~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 148 L-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--N-FTIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred h-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEE
Confidence 1 233456999999999999999999999999999999999999999999998843 4 45566788888999999999
Q ss_pred EEEcC-----------CeEEEecChhHHHH
Q 047682 365 ILISE-----------GQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~-----------G~iv~~G~~~~~~~ 383 (1425)
++|++ |++++.|+.+++.+
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHHh
Confidence 99996 67899999988753
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=317.87 Aligned_cols=210 Identities=21% Similarity=0.350 Sum_probs=164.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP--SLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|++|++||+++|+||||||||||+++|+|..++ ....+|+|.++|+++.+. ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998763 112389999999987531 1245799999988777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ +||+||+.++....+... . ......++++++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKD---------K------------------------KKLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 899999998654322100 0 001223455677777642111111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.+..|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++.+ +. +|+.++|+..++.+.+|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~-tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DY-TIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC-eEEEEEeCHHHHHhhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999843 44 4555788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|+++..|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=302.32 Aligned_cols=168 Identities=29% Similarity=0.444 Sum_probs=148.2
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 4667766552 23599999999999999999999999999999999997653 47999999987543
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 908 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 908 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
..+++.++|++|++.+++..|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998889899999873 8999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999986 577789999999975
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=317.52 Aligned_cols=211 Identities=20% Similarity=0.343 Sum_probs=166.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998741 11289999999887532 124679999998877
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++ .||+||+.++....+... . ...+..+++.++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKS---------K------------------------HKLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCc---------H------------------------HHHHHHHHHHHHHcCCCchhHHH-H
Confidence 76 899999998643221100 0 00112345677778875421111 1
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
++..+.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++++.++|+..++.+++|++++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEE
Confidence 344567999999999999999999999999999999999999999999999853 4 4555578888889999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988774
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=317.43 Aligned_cols=220 Identities=23% Similarity=0.292 Sum_probs=174.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 378889887663 2469999999999999999999999999999999999621124589999999875
Q ss_pred Ccc---cccc-eEEEeecCCCCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 047682 906 KQE---TFAR-ISGYCEQNDIHSPNVTVYESLLYSAWLRLP----PDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGV 976 (1425)
Q Consensus 906 ~~~---~~~~-~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 976 (1425)
... ..++ .++|++|++.+++.+|++|++.+....... .+....+..+.+.++++.+++. +..+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999999765432110 1112223345678889999996 34444422
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEeCC
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1055 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fD~v~~l~~G 1055 (1425)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 249999999999999999999999999999999999999999999999877999999999986 35555 799999986
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 688999976
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=321.19 Aligned_cols=218 Identities=19% Similarity=0.217 Sum_probs=173.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCc---eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~---~~~G~i~i~g 902 (1425)
-+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 588999988763 246999999999999999999999999999999999964311 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+++.++.+++......... ..+.
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 160 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EKGT 160 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CCcc
Confidence 87532 2345679999999888775 99999987643321 11 1223446677888877421111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC---
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1054 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~--- 1054 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++
T Consensus 161 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~ 238 (274)
T PRK14265 161 ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEID 238 (274)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 799999999997 58889999999972
Q ss_pred -----CcEEEEECCC
Q 047682 1055 -----GGYEIYVGPL 1064 (1425)
Q Consensus 1055 -----Gg~~~y~G~~ 1064 (1425)
.|++++.|+.
T Consensus 239 ~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 239 EYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccCceEEEeCCH
Confidence 4788999986
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=322.17 Aligned_cols=213 Identities=23% Similarity=0.270 Sum_probs=173.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~---~~~~G~i~i~g 902 (1425)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 488899988763 24699999999999999999999999999999999997541 13579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGL 973 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 973 (1425)
.+... ...++.++|++|+..+++. ||.||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999888775 99999987654331 122 23456788999998853 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEE-EE
Q 047682 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-LM 1052 (1425)
Q Consensus 974 ~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~-~l 1052 (1425)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999986 5778899975 56
Q ss_pred eCCcEEEEECCC
Q 047682 1053 KRGGYEIYVGPL 1064 (1425)
Q Consensus 1053 ~~Gg~~~y~G~~ 1064 (1425)
++ |+++..|+.
T Consensus 254 ~~-G~i~~~g~~ 264 (285)
T PRK14254 254 TG-GELVEFDDT 264 (285)
T ss_pred eC-CEEEEeCCH
Confidence 75 678888875
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=320.03 Aligned_cols=207 Identities=24% Similarity=0.343 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc-----CCCCCc-------cceEEEEc
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN-----MDEFVP-------QRTAAYIS 201 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~ 201 (1425)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35999999999999999999999999999999999999998 9999999987 554321 24699999
Q ss_pred cCC--CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc
Q 047682 202 QHD--VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV 279 (1425)
Q Consensus 202 Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 279 (1425)
|++ .+.+.+|+.||+.+.....+. . +. .+....++++++.+|+..
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~-~---------------------~~-----------~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGA-R---------------------HY-----------GDIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhcc-C---------------------cH-----------HHHHHHHHHHHHHcCCCh
Confidence 986 357778999999764221100 0 00 001223567888999963
Q ss_pred -cccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHH
Q 047682 280 -CADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETY 358 (1425)
Q Consensus 280 -~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~ 358 (1425)
..++.+ ..|||||||||+|||||+.+|++++|||||+|||..+...+.+.|+++.+.. +.+|+.++|+..++.
T Consensus 143 ~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHH
Confidence 445444 4699999999999999999999999999999999999999999999886543 455666788998999
Q ss_pred hhcCeEEEEcCCeEEEecChhHHH
Q 047682 359 DLFDDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 359 ~~~D~vilL~~G~iv~~G~~~~~~ 382 (1425)
+.+|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=318.63 Aligned_cols=207 Identities=17% Similarity=0.278 Sum_probs=162.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcccEEEECCccCCCC-----CccceEEEEccCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-----PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHD 204 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 204 (1425)
++|+|+|+++++||+++|+||||||||||+++|+|..+ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 58999999999999999999999999999999999864 45 89999999987532 1245799999998
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.+++. ||+||+.++.+..+... . ...+..++..++.+++.......
T Consensus 112 ~~~~~-tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAGERR---------K------------------------SVLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCCcchHHH
Confidence 77775 99999998643211000 0 00012244566777774211011
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
. ++.+..||||||||++|||||+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+..++.+++|+|
T Consensus 158 ~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 L-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEE
Confidence 1 233456999999999999999999999999999999999999999999999853 4 45555788888899999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=350.16 Aligned_cols=216 Identities=27% Similarity=0.324 Sum_probs=179.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~ 69 (501)
T PRK11288 5 LSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMR 69 (501)
T ss_pred EEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 77888887763 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 907 Q----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 907 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
. ..+++.+||++|++.+++.+||+||+.+....+.....+..+.++.++++++.++|.+..+.. +..||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHH
Confidence 2 123567999999998999999999998753211111123334456688999999998766655 3579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~ 222 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeec
Confidence 999999999999999999999999999999999999999999878999999999986 57788999999997 5777666
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 223 ~~ 224 (501)
T PRK11288 223 DD 224 (501)
T ss_pred Cc
Confidence 53
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=349.01 Aligned_cols=123 Identities=23% Similarity=0.298 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCcCCHHHHHHHHHHHHHhh---CCcEEE
Q 047682 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1001 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGqrqRl~ia~~L~~---~p~ill 1001 (1425)
.+||.|.+.|...+. .. ....++++.+||... .+.. ...||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 578888888765432 11 123578888999753 3443 45799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCC
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1064 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~ 1064 (1425)
|||||+|||+.+...+++.|+++.+.|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 346799999994 57899999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=280.52 Aligned_cols=201 Identities=27% Similarity=0.384 Sum_probs=170.3
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEcc
Q 047682 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQ 202 (1425)
Q Consensus 130 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q 202 (1425)
...+.+||++|++.|++||.++|+|||||||||||-+|+|+.+|+ +|+|.+.|+++..+.. .+.+|+|+|
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 345678999999999999999999999999999999999999999 9999999999876542 268999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
...++|+||..||+...+.+++-..+ +........|+.+||.+-.+
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~ 141 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLT 141 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCcccccc
Confidence 99999999999999988776652111 01223456789999987665
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D 362 (1425)
.. +.+|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.+.. +++++.++|+ +.....||
T Consensus 142 Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~-G~TlVlVTHD-~~LA~Rc~ 214 (228)
T COG4181 142 HY-----PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER-GTTLVLVTHD-PQLAARCD 214 (228)
T ss_pred cC-----ccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc-CceEEEEeCC-HHHHHhhh
Confidence 44 45699999999999999999999999999999999999999999999998765 4555545555 46778999
Q ss_pred eEEEEcCCeEEE
Q 047682 363 DIILISEGQIVF 374 (1425)
Q Consensus 363 ~vilL~~G~iv~ 374 (1425)
|++-|.+|+++.
T Consensus 215 R~~r~~~G~l~~ 226 (228)
T COG4181 215 RQLRLRSGRLVE 226 (228)
T ss_pred heeeeecceecc
Confidence 999999999974
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=317.21 Aligned_cols=212 Identities=19% Similarity=0.311 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCccCCCCC-----ccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHNMDEFV-----PQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|++|++|++++|+||||||||||+++|+|..+ |+...+|+|+++|+++.+.. .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 359999999999999999999999999999999999986 21112899999998865321 24679999998877
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++. ||+||+.++....+.... ..+....++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------------------------------KKKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------------------------------HHHHHHHHHHHHHHcCCCchhhhHh-
Confidence 775 999999886432211000 0001123566788899865322222
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+..++.|||||||||+|||+|+.+|++++|||||+|||..++..+.+.|+++.+ + .+|+.++|+..++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--N-FTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhcCEEEE
Confidence 234457999999999999999999999999999999999999999999998842 4 4555578888899999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=355.61 Aligned_cols=207 Identities=25% Similarity=0.342 Sum_probs=165.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++ .|
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~t 404 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DT 404 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-cc
Confidence 5899999999999999999999999999999999999998 9999999999876543 467999999876665 69
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++|||.++... .+.+.+.+++...+ .+. ....|++..||.+|+.+ .
T Consensus 405 i~~Ni~~~~~~-------------------------~~~~~~~~~~~~~~------l~~--~i~~lp~gl~t~~~~~g-~ 450 (569)
T PRK10789 405 VANNIALGRPD-------------------------ATQQEIEHVARLAS------VHD--DILRLPQGYDTEVGERG-V 450 (569)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHcC------CHH--HHHhCcCcccceecCCC-C
Confidence 99999875210 01111111111100 000 12346778899999864 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++||||++++|++++|||||+|||+.++..+.+.|+++. .++|+|++ +|+. +..+.+|+|++|++|+
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~i-tH~~-~~~~~~d~i~~l~~G~ 526 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIIS-AHRL-SALTEASEILVMQHGH 526 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEE-ecch-hHHHcCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999874 35666664 4444 4557799999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++.+|+++++.+
T Consensus 527 i~~~g~~~~l~~ 538 (569)
T PRK10789 527 IAQRGNHDQLAQ 538 (569)
T ss_pred EEEecCHHHHHH
Confidence 999999998864
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=332.03 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=178.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++++++. ++.++|+|+|+++++||.+||+|+||||||||++.|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 6899999999863 34579999999999999999999999999999999999765 4589999999885
Q ss_pred C---cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCC
Q 047682 906 K---QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS-------LVGLPG 975 (1425)
Q Consensus 906 ~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~ 975 (1425)
. +...++.+++++|...+|. -|+++||..+. ++.++++ +.++++.+||++.... .+|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 4 3345677899999876664 59999997642 3444443 6788999999876444 3444 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
.+.||||||||++|||+|++|.++++|||||.|||+.+.++|++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 578999999999999999999999999999999999999999999998774 999999999985 4688999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|+++..|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 6889998753
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=315.39 Aligned_cols=211 Identities=20% Similarity=0.275 Sum_probs=165.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 359999999999999999999999999999999999998751 1259999999887532 124679999999887
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++. ||+||+.++....+... . ++.....+.+++.+||.+......
T Consensus 97 ~~~-tv~enl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~~~l~~~~- 141 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTTA----------Q-----------------------SRLDEVVEKSLRQAALWDEVKDNL- 141 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCCh----------h-----------------------hHHHHHHHHHHHHhCCchhhhhHh-
Confidence 775 99999998654321100 0 001122345566667643211111
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
++....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+.+|++++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tilivsh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QN-YTIAIVTHNMQQAARASDWTGF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHhhCCEEEE
Confidence 23455799999999999999999999999999999999999999999999883 24 4555578899999999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 219 LLTGDLVEYGRTGEIF 234 (251)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999988774
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=316.80 Aligned_cols=211 Identities=20% Similarity=0.351 Sum_probs=164.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 359999999999999999999999999999999999986 2111389999999987431 124579999998877
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++ .||+||+.++....+... . +.....++.+++.+++........
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKD----------K-----------------------ELIDQRVEESLKQAAIWKETKDNL- 141 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCC----------H-----------------------HHHHHHHHHHHHHcCCCcchHHHh-
Confidence 75 799999988643221100 0 001123456777888842110011
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+...+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+|++
T Consensus 142 ~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--Q-YTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--C-CeEEEEECCHHHHHhhcCEEEE
Confidence 234457999999999999999999999999999999999999999999999843 4 4566678888899999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|+++..|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 219 LMNGDLIEAGPTEEMF 234 (251)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=319.39 Aligned_cols=218 Identities=20% Similarity=0.256 Sum_probs=172.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--c-eEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~--~-~~~G~i~i~g 902 (1425)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 378899988763 24699999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCC-----cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKK-----QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+.. ...+++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8752 1234567999999988887 499999987653321 11 1233456677888887432111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC---
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1054 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~--- 1054 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999975 589999999986 68899999999982
Q ss_pred -----CcEEEEECCC
Q 047682 1055 -----GGYEIYVGPL 1064 (1425)
Q Consensus 1055 -----Gg~~~y~G~~ 1064 (1425)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 3788999875
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=317.82 Aligned_cols=214 Identities=26% Similarity=0.288 Sum_probs=171.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc--
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP-- 904 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~-- 904 (1425)
++++|+++.++ .+.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (253)
T TIGR02323 4 LQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGA 68 (253)
T ss_pred EEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccc
Confidence 77888887663 2358999999999999999999999999999999999765 347999999875
Q ss_pred ---CCc---c----cccceEEEeecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccc
Q 047682 905 ---KKQ---E----TFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLV 971 (1425)
Q Consensus 905 ---~~~---~----~~~~~~gyv~Q~~~--~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~ 971 (1425)
... . ..++.++|++|++. +.+.+|+.|++.+..... . .......++.++++++.+++.+ ..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~- 145 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL- 145 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-
Confidence 321 1 12346899999974 446789999986542211 1 0111233456788999999963 55554
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEE
Q 047682 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1050 (1425)
Q Consensus 972 g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~ 1050 (1425)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|+++
T Consensus 146 ----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~ 220 (253)
T TIGR02323 146 ----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLL 220 (253)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 4579999999999999999999999999999999999999999999998754 899999999986 5777899999
Q ss_pred EEeCCcEEEEECCC
Q 047682 1051 LMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1051 ~l~~Gg~~~y~G~~ 1064 (1425)
+|++ |++++.|+.
T Consensus 221 ~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 221 VMQQ-GRVVESGLT 233 (253)
T ss_pred EEEC-CEEEEECCH
Confidence 9997 688888875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=313.71 Aligned_cols=209 Identities=22% Similarity=0.352 Sum_probs=168.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+++|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478899987763 2469999999999999999999999999999999999754 3579999999765
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLST 981 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSg 981 (1425)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988876 4999999875433211 11 124467899999995 355554 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 982 GqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++ +.+|++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 34 57999999963333344
Q ss_pred EC
Q 047682 1061 VG 1062 (1425)
Q Consensus 1061 ~G 1062 (1425)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 44
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=364.01 Aligned_cols=256 Identities=24% Similarity=0.373 Sum_probs=190.6
Q ss_pred HHhHHHHHHhhhhcccCHHHHHHHHHHHHhhcCCCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccc
Q 047682 48 LERQRLIDKLVKVADVDNEQLLLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHIL 127 (1425)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1425)
++-+..++|+.++.+.+++... + +....+.....++++|+++.+..
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~~----~--~~~~~~~~~~~i~~~~vsf~y~~---------------------------- 467 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPRS----A--GLAALPELRGAITFENIRFRYAP---------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCccC----C--CCCCCCCCCCeEEEEEEEEEcCC----------------------------
Confidence 3555666777776665544100 0 00001111346889999887631
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC
Q 047682 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD 204 (1425)
Q Consensus 128 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d 204 (1425)
.++++|+|+|++++||+.++|+|+||||||||+|+|+|.++|+ +|+|.+||+++++... ++.++||+|++
T Consensus 468 ----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 468 ----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred ----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 1234899999999999999999999999999999999999998 9999999999887653 57899999976
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.++ +.|++|||.++.. +.+.+.+.+++...+ .++.++ .|+...||.
T Consensus 541 ~lf-~~ti~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~t~ 586 (694)
T TIGR01846 541 VLF-SRSIRDNIALCNP-------------------------GAPFEHVIHAAKLAG------AHDFIS--ELPQGYNTE 586 (694)
T ss_pred eeh-hhhHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCccCcE
Confidence 655 5699999987521 111222222221111 112222 356778999
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+|+.+ .+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++. .++|+|+ ++|..+ ..+.||+|
T Consensus 587 i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~~~-~~~~~d~i 661 (694)
T TIGR01846 587 VGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVII-IAHRLS-TVRACDRI 661 (694)
T ss_pred ecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCChH-HHHhCCEE
Confidence 99765 5799999999999999999999999999999999999999999999873 3556555 455554 45679999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
++|++|+++++|+++++++
T Consensus 662 i~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 662 IVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=349.72 Aligned_cols=206 Identities=25% Similarity=0.325 Sum_probs=173.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCCCCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----ETFARISGYCEQNDIHSPNV 927 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~l 927 (1425)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999765 348999999987532 12345689999999888999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
||+||+.+..........+.++.++.++++++.+++.+..+.. +..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998753211111112333445688999999998776665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCC
Q 047682 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGR 1066 (1425)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~ 1066 (1425)
|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999888999999999986 57788999999997 68899998654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=316.08 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=174.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--ce--EEEEEEEcC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNIKISG 902 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~--~~--~~G~i~i~g 902 (1425)
+.+++++++++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ |. +.|++.++|
T Consensus 11 i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 11 FNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77 (257)
T ss_pred eeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECC
Confidence 78888887663 34699999999999999999999999999999999997542 21 346666666
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCCCC
Q 047682 903 YPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP----LRQSLVGLPG 975 (1425)
Q Consensus 903 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~~~ 975 (1425)
.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+ ..+..
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 150 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP----- 150 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----
Confidence 65421 2345679999999999999999999988643221 1123344566889999999864 23332
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..||+|||||++|||+|+.+|++++|||||+|||..++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~- 227 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN- 227 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 699999999986 57788999999986
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 228 g~i~~~g~~ 236 (257)
T PRK14246 228 GELVEWGSS 236 (257)
T ss_pred CEEEEECCH
Confidence 688888875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=366.00 Aligned_cols=208 Identities=27% Similarity=0.382 Sum_probs=175.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++|+++. +++.+|+|+|++|+|||.+||+|+||||||||+|+|+|..+ +.+|+|.+||.+.
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 6999999999841 23469999999999999999999999999999999999876 3589999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 975 (1425)
++ ..+++.+|||+|++.+++ -|++||+.++. + .+++ .+.++++..++.+. .|+.+|..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 457788999999998876 49999998642 1 2332 35677788777653 35556644
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 4679999999999999999999999999999999999999999999886 589999999985 5678999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 688999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=316.84 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=168.0
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
+|+|+|+++++||+++|+||||||||||+++|+|..+ .+|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 27999999987542 22345689999998888889999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1003 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~-------~p~illLD 1003 (1425)
||+.+.... ..+....++.++++++.++|.+..+.. +..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 122233345678999999998776665 35799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999986 57889999999996 6788888753
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=316.37 Aligned_cols=219 Identities=22% Similarity=0.278 Sum_probs=175.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-ceEEEEEEEcC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKISG 902 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~--~-~~~~G~i~i~g 902 (1425)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887652 2469999999999999999999999999999999999642 1 12579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 903 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.+... ...++.++|++|++.+++. |+.||+.+..... ...+.+..++.+.++++.+++.+....... ..+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87532 1345679999999988875 9999998764322 111233345667888999988542211111 1256
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999864 899999999986 68888999999986 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 8898875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.55 Aligned_cols=211 Identities=18% Similarity=0.284 Sum_probs=172.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +...+|+|+|++|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3788999887741 22359999999999999999999999999999999999864 369999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCC------CCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL------PGV 976 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~------~~~ 976 (1425)
.. ...++.++|++|++.+++. |++||+.... .... +.+.++++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 32 3456679999999998874 9999995321 1122 2357788889998765554321 134
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++|||+|+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999985 34 45999999986 6
Q ss_pred EEEEECCCC
Q 047682 1057 YEIYVGPLG 1065 (1425)
Q Consensus 1057 ~~~y~G~~~ 1065 (1425)
+++++|++.
T Consensus 213 ~i~~~g~~~ 221 (275)
T cd03289 213 KVRQYDSIQ 221 (275)
T ss_pred eEeecCCHH
Confidence 889999873
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=320.85 Aligned_cols=208 Identities=25% Similarity=0.384 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++|++++++||+|+||||++++|-.+++++ +|.|+++|+++.+.. .++.||.|||+.. +++.
T Consensus 276 r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtv-LFND 351 (497)
T COG5265 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTV-LFND 351 (497)
T ss_pred chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccce-ehhh
Confidence 46999999999999999999999999999999999999999 999999999987654 3578999999555 5577
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
|...|+.++.. +...++...++.. .+..+. .-.|++.+||.||+++.
T Consensus 352 ti~yni~ygr~-------------------------~at~eev~aaa~~-----aqi~~f---i~~lP~gy~t~Vgergl 398 (497)
T COG5265 352 TIAYNIKYGRP-------------------------DATAEEVGAAAEA-----AQIHDF---IQSLPEGYDTGVGERGL 398 (497)
T ss_pred hHHHHHhccCc-------------------------cccHHHHHHHHHH-----hhhhHH---HHhCchhhhcccchhee
Confidence 99999998732 2222222222211 111122 23589999999999998
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+ |||||||||+|||+++.+|+||+|||.||+||+.|...|...|++... ++|+++. . |+..+.--+|.|++|++|
T Consensus 399 k-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlvi-a-hrlsti~~adeiivl~~g 473 (497)
T COG5265 399 K-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVI-A-HRLSTIIDADEIIVLDNG 473 (497)
T ss_pred e-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEE-e-ehhhhccCCceEEEeeCC
Confidence 7 999999999999999999999999999999999999999999999864 6788773 3 344566679999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+|++.|++++++.
T Consensus 474 ~i~erg~h~~ll~ 486 (497)
T COG5265 474 RIVERGTHEELLA 486 (497)
T ss_pred EEEecCcHHHHHH
Confidence 9999999999986
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=320.26 Aligned_cols=203 Identities=19% Similarity=0.349 Sum_probs=163.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcccEEEECCccCCCC-----CccceEEEEccCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-----PSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHD 204 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 204 (1425)
.+|+|+|++|++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 58999999999999999999999999999999999864 35 99999999887532 1246799999998
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----cc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD----VC 280 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 280 (1425)
.+++. ||+||+.++....+... . ......++.+++.+|+. +.
T Consensus 130 ~l~~~-tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFPK-SIFDNIAYGPRLHGIND---------K------------------------KQLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCcc-CHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHhCCccchhhH
Confidence 77764 99999998643221100 0 00112345567777764 22
Q ss_pred ccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 047682 281 ADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360 (1425)
Q Consensus 281 ~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~ 360 (1425)
.+ ..+..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ + ++|+.++|+.+++.++
T Consensus 176 ~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~~~~ 247 (286)
T PRK14275 176 LD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQASRV 247 (286)
T ss_pred hh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHh
Confidence 33 33456999999999999999999999999999999999999999999998853 3 4566678888899999
Q ss_pred cCeEEEEcCCeEEEecChhHHH
Q 047682 361 FDDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 361 ~D~vilL~~G~iv~~G~~~~~~ 382 (1425)
+|++++|++|+++..|+.+++.
T Consensus 248 ~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 248 SDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988774
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=320.00 Aligned_cols=213 Identities=26% Similarity=0.380 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCcccEEEECCccCCCCCc---cceEEEEccCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS-----LKLSGRVTYNGHNMDEFVP---QRTAAYISQHDV 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 205 (1425)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ ...+|+|.++|+++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 45999999999999999999999999999999999999874 1137999999998764332 346899999877
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
.++.+||+||+.++..... .... ... .+....++.+++.+||+...++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~--~~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHA--RRAG-------------ALT---------------HRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhcccccc--cccc-------------cCC---------------HHHHHHHHHHHHHcCcHhhhcCCc
Confidence 6677999999987531100 0000 000 001224567889999986655544
Q ss_pred cCcccccCChhhhhhHHHHHHHh---------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLV---------GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~---------~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
..|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++.+..+ ++++.++|+..+
T Consensus 144 -----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~ 217 (272)
T PRK13547 144 -----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNL 217 (272)
T ss_pred -----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHH
Confidence 469999999999999999 59999999999999999999999999999865434 445557888888
Q ss_pred HHhhcCeEEEEcCCeEEEecChhHHH
Q 047682 357 TYDLFDDIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 357 ~~~~~D~vilL~~G~iv~~G~~~~~~ 382 (1425)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 98999999999999999999988763
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=314.42 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=166.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++. .++.+|+|+|++|++|++++|+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 667787776521 12459999999999999999999999999999999999765 34799999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccC------CCCCC
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG------LPGVS 977 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g------~~~~~ 977 (1425)
. ...++.++|++|++.+++ .|+.|++.+... ... ++.+.++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223557899999988776 699999976321 111 1235677888888776655321 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++. . .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-Ce
Confidence 79999999999999999999999999999999999999999999998764 89999999986 3 479999999997 56
Q ss_pred EEEEC
Q 047682 1058 EIYVG 1062 (1425)
Q Consensus 1058 ~~y~G 1062 (1425)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 66654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=318.82 Aligned_cols=211 Identities=18% Similarity=0.276 Sum_probs=168.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHD 204 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 204 (1425)
+++.+|+|+|++++|||+++|+||||||||||+++|+|.++|.. ..+|+|+++|+++... ..++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 34569999999999999999999999999999999999997610 1389999999987532 1246799999987
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
..+ .+|++||+.++....+.. .+....++.+++.+||.+..+..
T Consensus 99 ~~~-~~tv~enl~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~l~~~i~~~ 142 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNRYK-----------------------------------GDLGDRVKHALQGAALWDEVKDK 142 (261)
T ss_pred ccc-cccHHHHHHHHHhhcCch-----------------------------------HHHHHHHHHHHHHcCCchhhhhh
Confidence 766 699999999875422100 00112356677888885433222
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
. +...+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+..++.+++|+|
T Consensus 143 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~--~-~tii~isH~~~~i~~~~d~v 218 (261)
T PRK14263 143 L-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--D-YTIALVTHNMQQAIRVADTT 218 (261)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCCEE
Confidence 2 234567999999999999999999999999999999999999999999999842 4 45666788888899999999
Q ss_pred EEEc--------CCeEEEecChhHHH
Q 047682 365 ILIS--------EGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~--------~G~iv~~G~~~~~~ 382 (1425)
++|+ +|++++.|+.+++.
T Consensus 219 ~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 219 AFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEecccccccCCceEEEeCCHHHHH
Confidence 9996 89999999988774
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=314.33 Aligned_cols=219 Identities=19% Similarity=0.259 Sum_probs=175.2
Q ss_pred ceEEEecceeeeecch----hhhh--ccc-cCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEE
Q 047682 825 LSLTFEDVVYSVDMPQ----EMKL--QGV-LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 897 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~ 897 (1425)
+++..+|++..+.... ..+. .+. ....+.+|+|+|++|++||++||+||||||||||+++|+|..+ +..|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4677777765554321 1111 011 1234679999999999999999999999999999999999765 34799
Q ss_pred EEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 898 IKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 898 i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
|.++|. ++++.|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..+.. +.
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 356777777778899999998754332 223444455677888888998776664 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999777999999999986 57788999999986 67
Q ss_pred EEEECCCC
Q 047682 1058 EIYVGPLG 1065 (1425)
Q Consensus 1058 ~~y~G~~~ 1065 (1425)
++..|+..
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 88888864
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=306.02 Aligned_cols=178 Identities=26% Similarity=0.332 Sum_probs=150.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-----ccccceEEEeecCCC-CCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-----ETFARISGYCEQNDI-HSP 925 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 925 (1425)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 469999999999999999999999999999999999765 348999999987531 123567899999973 333
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 047682 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP 1005 (1425)
..||+||+.+..... ..+.++.++.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998865422 223344455678999999998777765 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 047682 1006 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
|+|||+.++..+.+.|+++.++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=329.44 Aligned_cols=211 Identities=28% Similarity=0.375 Sum_probs=178.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC--CCC---CccceEEEEccC--C
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM--DEF---VPQRTAAYISQH--D 204 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~--~~~---~~~~~~~yv~Q~--d 204 (1425)
+...+++||||.+++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+. +.. ..++.+-+|+|+ .
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 4567999999999999999999999999999999999999998 99999999872 111 123567788887 4
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
.+.|.+||+++|.......+... ..+...+++++++..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----
Confidence 78999999999987655432110 11223468889999999842
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
..++++..|||||||||+|||||+.+|+++++|||||.||+.++.+|.+.|+++.++.+ .+.+.|+|+..-+..+||||
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g-~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG-LTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHhhCceE
Confidence 44577788999999999999999999999999999999999999999999999988765 55566899999999999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
++|++|+||+.||.+++.+
T Consensus 501 ~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred EEEECCeEEEeCCHHHHhc
Confidence 9999999999999998853
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=315.86 Aligned_cols=206 Identities=27% Similarity=0.416 Sum_probs=158.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 35899999999999999999999999999999999999998 999999998775432 245799999987665 57
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh--CCcccccccccCc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL--GLDVCADTMVGDE 288 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~ 288 (1425)
||+||+.+... . ...+... .... ....+..++.+ +++...+ +
T Consensus 91 tv~~nl~~~~~--~--~~~~~~~---------------------~~~~------~~~~~~~l~~l~~~~~~~~~-----~ 134 (237)
T cd03252 91 SIRDNIALADP--G--MSMERVI---------------------EAAK------LAGAHDFISELPEGYDTIVG-----E 134 (237)
T ss_pred hHHHHhhccCC--C--CCHHHHH---------------------HHHH------HcCcHHHHHhCcccccchhh-----c
Confidence 99999987431 0 0000000 0000 00112344444 4443333 2
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.| |+.++|+.+++ +.+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~t-iii~sH~~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRT-VIIIAHRLSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCE-EEEEeCCHHHH-HhCCEEEEEE
Confidence 3456999999999999999999999999999999999999999999999842 445 55566777777 5699999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|++++.|+.+++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=359.28 Aligned_cols=208 Identities=25% Similarity=0.431 Sum_probs=166.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|+.+++|+.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++. +++.|
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~-lf~~T 421 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVV-LFNDT 421 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcc-ccccc
Confidence 5899999999999999999999999999999999999998 9999999999876653 467999999765 55679
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++|||.++... +.+.+++.+++...+ .++.++ .|++..||.+|+.+ +
T Consensus 422 i~~Ni~~~~~~------------------------~~~~~~i~~~l~~~~------l~~~i~--~lp~gldt~i~~~g-~ 468 (571)
T TIGR02203 422 IANNIAYGRTE------------------------QADRAEIERALAAAY------AQDFVD--KLPLGLDTPIGENG-V 468 (571)
T ss_pred HHHHHhcCCCC------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCcccceecCCC-C
Confidence 99999976310 111122222211110 111121 35667899999875 5
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++||||++.+|++++||||||+||..++..|.+.|++..+ ++|+|++ +|+. +..+.||+|++|++|+
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIii-tH~~-~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVI-AHRL-STIEKADRIVVMDDGR 544 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEE-ehhh-HHHHhCCEEEEEeCCE
Confidence 6999999999999999999999999999999999999999999998642 5666664 4443 5678899999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
++..|+++++.+
T Consensus 545 i~~~g~~~~l~~ 556 (571)
T TIGR02203 545 IVERGTHNELLA 556 (571)
T ss_pred EEeeCCHHHHHH
Confidence 999999999864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=317.55 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 359999999999999999999999999999999999987631 1379999999987532 124579999999888
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----cccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD----VCAD 282 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~ 282 (1425)
++.+|++||+.++....+... . ++.....+..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD----------R-----------------------DHLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC----------H-----------------------HHHHHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987643211000 0 00111233445555543 2233
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D 362 (1425)
+. ++.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++++.++|+..++.+.+|
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 33 456999999999999999999999999999999999999999999999853 4 555667888889999999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 047682 363 DIILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 363 ~vilL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988874
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=319.16 Aligned_cols=195 Identities=26% Similarity=0.329 Sum_probs=155.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCH
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 58999999999999999999999999999999999865 357999999976432 234567899999988776 699
Q ss_pred HHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEE
Q 047682 930 YESLLYSAWLRLPPDVDSETRRM-----FLEEIMELV--ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illL 1002 (1425)
+||+.+... ........+ .+++.++.+ ++.+..+.. +..||||||||++||++|+.+|++|+|
T Consensus 93 ~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999976432 111111111 234444444 444444332 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1003 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1003 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++. .+|++++|++ |+++..|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecC-CeEeeeCCH
Confidence 999999999999999999999864 899999999996 454 5999999997 577888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=308.78 Aligned_cols=198 Identities=29% Similarity=0.388 Sum_probs=164.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++..++ ++.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67788877652 2469999999999999999999999999999999999765 34799999997643
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
....++.++|++|++.+++.+|+.||+.+....+ ... ++.++++++.+||.+..+.. ...||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 2225567899999988888999999998755332 111 12378899999998766655 34799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++. . |+++.++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~~ 200 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLGP 200 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeecC
Confidence 99999999999999999999999999999999999998878999999999985 344 3 88887753
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=314.84 Aligned_cols=219 Identities=26% Similarity=0.304 Sum_probs=170.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|+|++|++|++++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56778877663 24699999999999999999999999999999999997321135799999998753
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHhh-ccC--C-CCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 047682 907 QE---T-FARISGYCEQNDIHSPNVTVYESLLYSAW-LRL--P-PDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVS 977 (1425)
Q Consensus 907 ~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~-lr~--~-~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 977 (1425)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . .........+++++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 23468999999988888887777643211 110 0 0112223345678889999984 3444432 12
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fD~v~~l~~Gg 1056 (1425)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999986 35554 899999986 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 78899875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=315.07 Aligned_cols=211 Identities=20% Similarity=0.298 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 206 (1425)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 35899999999999999999999999999999999987531 11389999999987543 124579999999887
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++. ||+||+.++.+..+... . ......++.+++.+++.+...+..
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKN---------K------------------------KTLDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCC---------H------------------------HHHHHHHHHHHHHhcCchhhHHHh-
Confidence 774 99999998754321100 0 001123455677777743211111
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
++..+.||||||||++|||+++.+|++++|||||+|||..++..+.+.|+++.+ + .+++.++|+.+++.+.+|++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEE
Confidence 234456999999999999999999999999999999999999999999998854 3 4555578888889999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|+++..|+.+++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 221 MYLGKLIEFDKTTQIF 236 (253)
T ss_pred EECCEEEEcCCHHHHH
Confidence 9999999999988764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=302.68 Aligned_cols=170 Identities=39% Similarity=0.666 Sum_probs=148.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL--DPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.....++.++|++|++..++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998765434577999999988889999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++||+.++.++ +
T Consensus 99 ~~~~i~~~~~~-----------------------------------------------------------~--------- 110 (194)
T cd03213 99 VRETLMFAAKL-----------------------------------------------------------R--------- 110 (194)
T ss_pred HHHHHHHHHHh-----------------------------------------------------------c---------
Confidence 99999864210 0
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecCh-hhHHhhcCeEEEEcCC
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPA-PETYDLFDDIILISEG 370 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~-~~~~~~~D~vilL~~G 370 (1425)
.||||||||++|||||+.+|++++|||||+|||..++..+.+.|+++.+ .+.|+|+ ++|+. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999999854 3556555 45555 4788899999999999
Q ss_pred eEEEec
Q 047682 371 QIVFQG 376 (1425)
Q Consensus 371 ~iv~~G 376 (1425)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=316.58 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=164.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|+++++||+++|+|+||||||||+|+|+|.++++. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 58999999999999999999999999999999999987531 1389999999987431 1235799999998777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ +||+||+.++....+.. ++ .+....++.+++.+|+....... -+
T Consensus 101 ~-~tv~enl~~~~~~~~~~-------------------~~--------------~~~~~~~~~~l~~~~l~~~l~~~-~~ 145 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKL-------------------PQ--------------ADLDEIVESALKGAALWQEVKDK-LN 145 (259)
T ss_pred C-ccHHHHHHHHHHHhcCC-------------------CH--------------HHHHHHHHHHHHHcCCcchhhhH-hc
Confidence 6 89999998864322100 00 01122345667777774211111 12
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..++.|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ + .+++.++|+.+++.+++|++++|
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 34457999999999999999999999999999999999999999999999853 4 45555788999999999999999
Q ss_pred c-----CCeEEEecChhHHH
Q 047682 368 S-----EGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~-----~G~iv~~G~~~~~~ 382 (1425)
+ +|+++++|+++++.
T Consensus 223 ~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 223 STDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eccCCCCceEEEeCCHHHHh
Confidence 7 59999999998874
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.23 Aligned_cols=212 Identities=21% Similarity=0.306 Sum_probs=168.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 5899999999999999999999999999999999999874 12479999999886421 1245799999987777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ +||+||+.++....+.. +. .+....+..+++.+++.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~-------------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWR-------------------PK--------------LEIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCC-------------------cH--------------HHHHHHHHHHHHHcCCcchhhhHh-c
Confidence 7 89999998864321100 00 001123566788888754221111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+.+..||||||||++|||+|+.+|++++|||||+|||..+...+.+.|++++...+ ++|+.++|+..++.++||+|++|
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~-~tiiivsH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE-LTMVIVSHNLHQVSRLSDFTAFF 224 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhcCEEEEE
Confidence 34457999999999999999999999999999999999999999999999865434 45555788889999999999999
Q ss_pred cC-----CeEEEecChhHHH
Q 047682 368 SE-----GQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~-----G~iv~~G~~~~~~ 382 (1425)
++ |+++++|+++++.
T Consensus 225 ~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 225 KGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ccCCCcCceEEEeCCHHHHH
Confidence 99 9999999999874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=319.86 Aligned_cols=211 Identities=24% Similarity=0.320 Sum_probs=168.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCCC----ccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEFV----PQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 207 (1425)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|. ...+|+|.++|+++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 45999999999999999999999999999999999998751 012899999999875431 246799999988777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ .||+||+.++........ . .+....++.+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP---------R------------------------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 899999987643211000 0 011123456778888865432222 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..++.||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998854 3 45566788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=316.97 Aligned_cols=210 Identities=19% Similarity=0.305 Sum_probs=165.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS--LKLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|+.|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++..+
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5899999999999999999999999999999999998741 01289999999987531 1246799999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+. ||+||+.++....+... + ...+..++++++.+++.....+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINN--R-------------------------------RVLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCc--H-------------------------------HHHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 99999988654321100 0 001123456677778753211111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
...+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +. +++.++|+..++.+.+|+|++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~-tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KY-TIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEeCCHHHHHhhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999854 44 4555788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+++++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988763
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=291.53 Aligned_cols=215 Identities=24% Similarity=0.357 Sum_probs=184.8
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc---ceEEEEccCC
Q 047682 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQHD 204 (1425)
Q Consensus 128 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d 204 (1425)
+++.+++.+|+|+|..|++|.+|+++|||||||||||.+++++++.+ +|+|+++|+++.....+ +.++..-|+.
T Consensus 8 ~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred hHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 34456678999999999999999999999999999999999999998 99999999999776543 6788999988
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 047682 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM 284 (1425)
Q Consensus 205 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 284 (1425)
..-..+||||-+.||. +.....| + ..+.+..+++.++-|+|++..|..
T Consensus 85 ~i~~rlTV~dLv~FGR-fPYSqGR-----------------l--------------t~eD~~~I~~aieyl~L~~l~dry 132 (252)
T COG4604 85 HINSRLTVRDLVGFGR-FPYSQGR-----------------L--------------TKEDRRIINEAIEYLHLEDLSDRY 132 (252)
T ss_pred hhhheeEHHHHhhcCC-CcccCCC-----------------C--------------chHHHHHHHHHHHHhcccchHHHh
Confidence 8888999999999983 2111000 0 012244678889999999887755
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
. ..||||||||.-||..++.+.+.++||||.+.||-..+.++++.|++++++.++|+|+ +.|+-.....++|+|
T Consensus 133 L-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~YsD~I 206 (252)
T COG4604 133 L-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDHI 206 (252)
T ss_pred H-----HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhhhhe
Confidence 5 4699999999999999999999999999999999999999999999999999888877 567888888999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
+-|.+|+++.+|+++++.+
T Consensus 207 VAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 207 VALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeecCCEEEecCCHHHhcC
Confidence 9999999999999999863
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=318.51 Aligned_cols=208 Identities=21% Similarity=0.299 Sum_probs=161.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCCC-----CccceEEEEccCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDEF-----VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 207 (1425)
++|+|+|++|++||+++|+||||||||||+++|+|.+++.. ..+|+|.++|+++... ..++.++|++|+...+
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 58999999999999999999999999999999999986311 1389999999887431 1246799999987777
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+. ||.||+.++....+... . .+...+..++.+++........ +
T Consensus 114 ~~-tv~~nl~~~~~~~~~~~---------------------~--------------~~~~~~~~l~~~~l~~~l~~~~-~ 156 (274)
T PRK14265 114 PK-SIYENIAFAPRANGYKG---------------------N--------------LDELVEDSLRRAAIWEEVKDKL-K 156 (274)
T ss_pred cc-cHHHHHHhHHHhcCchH---------------------H--------------HHHHHHHHHHHcccchhhHHHh-c
Confidence 64 99999988643211000 0 0011234556666532111111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
..+..|||||||||+|||||+.+|+++||||||+|||..++..+.+.|+++.+ + ++|+.++|+.+++.+++|++++|
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 233 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--Q-YTIIMVTHNMQQASRVADWTAFF 233 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999853 4 45666789999999999999999
Q ss_pred c---------CCeEEEecChhHHH
Q 047682 368 S---------EGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~---------~G~iv~~G~~~~~~ 382 (1425)
+ +|++++.|+.+++.
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred ecccccccccCceEEEeCCHHHHH
Confidence 7 89999999998874
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=304.05 Aligned_cols=197 Identities=26% Similarity=0.418 Sum_probs=171.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEccCCCCCCCC
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~l 210 (1425)
=++++..+.--+|||-|+||||||||+|+|+|+.+|+ +|.|.+||..+.+.. .+|++|||+|+-.+||.+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3577777765899999999999999999999999999 999999998764422 248899999999999999
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+.||.|+.... .....|.+.+.||+++..+.+ +
T Consensus 92 tVrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P 126 (352)
T COG4148 92 TVRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----P 126 (352)
T ss_pred EEecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----C
Confidence 9999999985321 011246788999999988755 4
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||++.|++|+||||.+.||-....+|+-.|+++.++. +.-|+.++|...|+.+++|+|++|++|
T Consensus 127 ~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCC
Confidence 5699999999999999999999999999999999999999999999998765 456677899999999999999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
++...|+.+++.+
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999998853
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=316.82 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=164.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCccCCC-C---CccceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL--KLSGRVTYNGHNMDE-F---VPQRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~d~~~ 207 (1425)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+|.. ..+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 459999999999999999999999999999999999987520 128999999988742 1 1246799999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+ .||+||+.++....+... + ......+++.++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKD---------K------------------------KVLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCc---------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 899999988643211000 0 001123445667777653211111 2
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.....|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+..++.+.+|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999854 4 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+.+++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 218 LMGELVEHDDTQVIF 232 (249)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=301.45 Aligned_cols=170 Identities=29% Similarity=0.424 Sum_probs=148.8
Q ss_pred EEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc
Q 047682 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ 907 (1425)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 907 (1425)
+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4667766552 2469999999999999999999999999999999999765 358999999987532
Q ss_pred -----ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 908 -----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 908 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
...++.++|++|++.+++..|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999999888889999987532 8999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 983 qrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877 899999999986 566789999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=318.74 Aligned_cols=198 Identities=22% Similarity=0.237 Sum_probs=159.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 211 (1425)
.+|+|+|+.|++||+++|+||||||||||+++|+|+++ . +|+|.++|.++.... .++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 48999999999999999999999999999999999997 5 899999999886543 2467999999988776 59
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-------cccccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-------VCADTM 284 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~~t~ 284 (1425)
|+||+...... . . + .+...++.+||. ...++.
T Consensus 93 v~~nl~~~~~~----~-~---------------------~---------------~~~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGKW----S-D---------------------E---------------EIWKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccCC----C-H---------------------H---------------HHHHHHHHcCCHHHHHhCcccccce
Confidence 99999632100 0 0 0 011223334443 445667
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+++ ....||||||||++||||++.+|++++|||||+|||+.+...+.+.|++.. .+ ++|+.++|+.+++. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--AD-CTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CC-CEEEEEECCHHHHH-hCCEE
Confidence 765 456799999999999999999999999999999999999999999999763 24 45555777776665 59999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=314.78 Aligned_cols=201 Identities=26% Similarity=0.393 Sum_probs=167.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCCH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 212 (1425)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999984 3 8999999998765432 2468999999888889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.+.... +. . . .+....++++++.+||++..++.+ +.
T Consensus 87 ~~nl~~~~~~-~~-~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (248)
T PRK03695 87 FQYLTLHQPD-KT-R---------T------------------------EAVASALNEVAEALGLDDKLGRSV-----NQ 126 (248)
T ss_pred HHHHHhcCcc-CC-C---------c------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----cc
Confidence 9999875211 00 0 0 001234567889999987666555 45
Q ss_pred CChhhhhhHHHHHHHhc-------CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 293 ISGGQRKRVTTGEMLVG-------PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~-------~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++.+ . +++++.++|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q-GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999864 3 4456667888889999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987763
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=356.08 Aligned_cols=212 Identities=23% Similarity=0.303 Sum_probs=176.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++|.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEh
Confidence 6999999998841 234699999999999999999999999999999999998663 479999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 975 (1425)
++ ..+++.++|++|++.+++ -|++||+.++. +.+.+++ .++++++..++.+ -.|+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~- 477 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGEN- 477 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCC-
Confidence 53 456788999999998886 59999997641 2223333 3566677766543 246667754
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~- 553 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 36799999999999999999999999999999999999999999999875 4799999999984 5778999999996
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 554 g~i~e~g~~ 562 (582)
T PRK11176 554 GEIVERGTH 562 (582)
T ss_pred CEEEEeCCH
Confidence 688998884
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=318.50 Aligned_cols=196 Identities=29% Similarity=0.415 Sum_probs=153.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVT 928 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 928 (1425)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999765 347999999976532 223456999999988776 69
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEE
Q 047682 929 VYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS-------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001 (1425)
Q Consensus 929 v~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ill 1001 (1425)
|+|++.+.... ...+. ..+.++..++.+..+. ... ..+..||||||||++||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDEE----VEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHHH----HHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999764321 11111 2233333333222111 111 1246799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++ +.||++++|++ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7999999999986 35 48999999997 578888875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=292.70 Aligned_cols=205 Identities=25% Similarity=0.391 Sum_probs=178.5
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCC
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPN 926 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 926 (1425)
+.+.+|+|+|..|++|.+++++|||||||||||.++++... ..+|+|.++|.+... +..++..+..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 45789999999999999999999999999999999998655 358999999998643 3456677888898888889
Q ss_pred CCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 047682 927 VTVYESLLYSAWLRLPP--DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1425)
Q Consensus 927 lTv~E~l~~~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDE 1004 (1425)
+||+|-+.|+. .|. +...++.+..+++.++.++|+++.|.. ..+||||||||.-||+.|+.+.+.++|||
T Consensus 90 lTV~dLv~FGR---fPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 90 LTVRDLVGFGR---FPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred eEHHHHhhcCC---CcccCCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhhhhheeeeccCcEEEecC
Confidence 99999999863 332 233345567799999999999999987 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCC
Q 047682 1005 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGR 1066 (1425)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~ 1066 (1425)
|.++||-..+..+|+.||+++++ |+|||++.||... ...+.|+|+-|++ |+++..|++++
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 99999999999999999999977 9999999999875 4567899999997 69999999853
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=351.44 Aligned_cols=207 Identities=21% Similarity=0.349 Sum_probs=164.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.++ +.|
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~t 424 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRS 424 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccC-ccc
Confidence 4899999999999999999999999999999999999998 9999999998876543 47899999987655 579
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
++||+.++... .+.++..+++...+ .+..+ ..+++..||.+|+.+ .
T Consensus 425 i~~Ni~~~~~~-------------------------~~~~~~~~a~~~~~------~~~~i--~~l~~g~~t~~~~~~-~ 470 (585)
T TIGR01192 425 IRENIRLGREG-------------------------ATDEEVYEAAKAAA------AHDFI--LKRSNGYDTLVGERG-N 470 (585)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHhC------cHHHH--HhccccccchhcCCC-C
Confidence 99999885311 11111112111100 01111 235666789998754 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.||||||||++|||||+.+|++++|||||+|||..++..+.+.|+++. .++|+|+ ++|+.+.+ +.+|+|++|++|+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~-isH~~~~~-~~~d~i~~l~~G~ 546 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFI-IAHRLSTV-RNADLVLFLDQGR 546 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEE-EEcChHHH-HcCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998863 2556555 55555454 6799999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=317.07 Aligned_cols=207 Identities=25% Similarity=0.323 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCC--C
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHD--V 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 205 (1425)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 46999999999999999999999999999999999999988 9999999998765432 45799999986 3
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 284 (1425)
+.+..|++|++.+...... ... ..+....++.+++.+|+. ...++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~---------~~~------------------------~~~~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLL---------SLD------------------------KAERLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhc---------cCC------------------------HHHHHHHHHHHHHHcCCChhHhhCC
Confidence 5678999999976432100 000 001123467788899996 345544
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.+.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++++.. +++++.++|+..++.+++|++
T Consensus 149 -----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 149 -----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQF-GTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred -----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHc-CcEEEEEECCHHHHHHhCCEE
Confidence 34699999999999999999999999999999999999999999999986543 455555788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+.+++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999988764
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=316.06 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=164.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ +.+.+++|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 367888887663 12359999999999999999999999999999999999765 3479999999765
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccccc-C-----CCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV-G-----LPGV 976 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-g-----~~~~ 976 (1425)
.. ..+++.++|++|++.+++. |++||+.+... .... ..+++.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999887775 99999976421 1111 12344455555443332211 0 1124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999986 5899999999986 34 56999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 77887764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1425 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-11 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-11 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-11 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-10 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-10 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 9e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 9e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-04 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 6e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1425 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-16 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-16 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-23 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-08 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-11 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-10 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 9e-15 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-09 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-05 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-10 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-04 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-05 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 8e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 4e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 4e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 5e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-04 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-05 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 6e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 9e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 4e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 9e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-04 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 5e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 8e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGY-PKKQETFA 911
L G+S G + L+G +GAGKTT + +++ + + G + + G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 912 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R Y + N+ E L + A S +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1031 VVCTIH 1036
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 6e-16
Identities = 57/258 (22%), Positives = 90/258 (34%), Gaps = 68/258 (26%)
Query: 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE- 190
K ILK ++ ++ + L+GP +GKTT L ++ + PS SG VT G N+ E
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEE 82
Query: 191 ---------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKD 241
++P+ AY M E L F A S E +
Sbjct: 83 PHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYA----------SSSSEIE 124
Query: 242 ANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRV 301
+ + ++ GL V S G +++
Sbjct: 125 EMV------------------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKL 155
Query: 302 TTGEMLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISLLQPAPETY 358
L+ P L +DE ++GLD ++ R+I+ + G ++ E
Sbjct: 156 LIARALMVNPRL-AILDEPTSGLDVLNAREV----RKILKQASQEGLTILVSSHNMLEVE 210
Query: 359 DLFDDIILISEGQIVFQG 376
L D I LI G IV G
Sbjct: 211 FLCDRIALIHNGTIVETG 228
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 34/223 (15%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKK 906
+ L ++ G + A++G +G GK+TL+D+L G R G I
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----------- 63
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLL-----YSAWLRLPPDVDSETRRMFLEEIMELV 961
+ G+ Q +V + +L + P D + + ++ +
Sbjct: 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYL 116
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
L L + + LS QR+ + IA + + +I +DEPTS LD IV+ +
Sbjct: 117 NLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL 171
Query: 1022 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063
+ TVV T HQP+ + ++ L+ + G
Sbjct: 172 IDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 6e-16
Identities = 40/255 (15%), Positives = 82/255 (32%), Gaps = 64/255 (25%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+ + +N + + +LG GK+TLL L G P G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
++ ++ Q +V + +V + R +
Sbjct: 66 QSIGFVPQFFSSPFAYSVLD-----------------IVLMGRS-------------THI 95
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA- 313
A V + L L A +SGGQR+ + L+ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 314 ----LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL--LQPAPETYDLFDDIILI 367
+ +DE ++ LD + +++ L + N T V + + + +L+
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 368 SEGQIVFQGPREHVL 382
++ G ++L
Sbjct: 203 NKQ-NFKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNIKISGYPKKQETFA 911
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
Y Q V+ L + +TR L ++ + L+
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLNDVAGALALDDKLGRST 124
Query: 972 GLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 125 -----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 1025 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
G +V + H D+ +L+K G
Sbjct: 180 SQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 80/268 (29%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
T L ++G V+ + L+GP +GK+TLL +AG + G + + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 69
Query: 195 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+ A AY+SQ V + L + +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH-----------------YLTLHQH-------DKTRTE 105
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRV--------TT 303
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 304 GEMLVGPALALFMDEISTGLDSS---TTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
+ L L +DE LD + +I+++L Q G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALSQ-----QGLAIVMSS------HDL 193
Query: 361 ------FDDIILISEGQIVFQGPREHVL 382
L+ G+++ G RE VL
Sbjct: 194 NHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 4e-23
Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKISGYPKKQETFA 911
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
+I + + I ++V + L A L V + + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNE--IMDALESVEVLDLKKK-- 130
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1030
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1031 VVCTIHQPSIDIFEAFDELFLMKRG 1055
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-15
Identities = 37/257 (14%), Positives = 77/257 (29%), Gaps = 74/257 (28%)
Query: 132 KKF--TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
+ +L+ + ++ + GP GKTTLL ++ L P G + YNG +
Sbjct: 18 VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT 74
Query: 190 E------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
+ F+P+ +++V + L A GV + K+
Sbjct: 75 KVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYGV-----------KVNKNE- 114
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
++ + + L +S G +RV
Sbjct: 115 ------------------------IMDALESVEVLDLKKK------LGELSQGTIRRVQL 144
Query: 304 GEMLVG-PALALFMDEISTGLDSSTTFQIVTSLRQIIHILN---GTAVISLLQPAPETYD 359
L+ + +D+ +D + ++ + I + G +IS + E
Sbjct: 145 ASTLLVNAEI-YVLDDPVVAIDEDSKHKV----LKSILEILKEKGIVIIS----SREELS 195
Query: 360 LFDDIILISEGQIVFQG 376
D + +
Sbjct: 196 YCDVNENLHKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-20
Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 818 MVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLV------LLNGVSGAFRPGVLTALM 871
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 872 GVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV 929
G +G GKTTL+ +LAG + G + +S P+K TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 989
+ F ++++ + ++ + V LS + +R+ I
Sbjct: 431 RQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 990 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1032
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK---ISGYPKKQETFARISGYC 917
RPG + L+G +G GK+T + +LAG + G + I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 918 EQND--------IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
E + + + + + L + E ++ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1030 TVV 1032
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 47/220 (21%), Positives = 71/220 (32%), Gaps = 56/220 (25%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
+ + +L G S + +++G +GKTTL+ LAG L P G+
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+P+ + Q P
Sbjct: 410 ---IPKLNVSMKPQK-----------------------IAPKF--------------PGT 429
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+F K + + TD V+K L +D D V +SGG+ +RV L
Sbjct: 430 VRQLFFKKIRGQFLNPQFQTD-VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348
PA +DE S LDS +R+ I TA I
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 43/225 (19%), Positives = 73/225 (32%), Gaps = 51/225 (22%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+ +P ++ L+G GK+T L LAGK P+L GR
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFD------------ 135
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
+E + + + + ++ + A IKP +D
Sbjct: 136 -------------DPPEWQEIIKYFRGSE----LQNYFTKMLEDDIKAIIKP-QYVDNIP 177
Query: 255 KA-----------LATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
+A L +++ IK+L L+ V + +SGG+ +R
Sbjct: 178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE-----NVLKRDIEKLSGGELQRFAI 232
Query: 304 GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348
G V A DE S+ LD +R ++ VI
Sbjct: 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA--PTKYVI 275
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 6e-20
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L G R G + ++G +G GKTT + +LAG T G + ++ ++ K Q
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----Y 425
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
I TVYE L D + E+++ + + L V
Sbjct: 426 IK--------AEYEGTVYELLSKI-------DSSKLNSNFYKTELLKPLGIIDLYDRNV- 469
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1031
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 470 ----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 1032 V 1032
+
Sbjct: 526 L 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 6e-13
Identities = 57/299 (19%), Positives = 102/299 (34%), Gaps = 90/299 (30%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
+ L+ G ++ + ++GP GKTT + LAG +P+ G+V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 188 MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
T AY K IK +
Sbjct: 418 --------TVAY----------------------------------------KPQYIKAE 429
Query: 248 PD---IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
+ ++ K +++ T+ ++K LG+ D V D +SGG+ +RV
Sbjct: 430 YEGTVYELLSKIDSSKLNSNFYKTE-LLKPLGIIDLYDRNVED-----LSGGELQRVAIA 483
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA-VISLLQPAPETYDLF-- 361
L+ A +DE S LD + ++R ++ TA V+ +D+
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMI 535
Query: 362 ----DDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQE--VTSKKDQQQY 414
D +I+ EG+ G L R+G+ FL +T ++D
Sbjct: 536 DYVSDRLIVF-EGEPGRHG---RALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 23/222 (10%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNIKISGYPKK-- 906
+ + G++ ++G +G GKTT + +LAG+ + + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
Q F R+ + + V + + L + EE+++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL---LKKVDEVGKFEEVVKELELENV 221
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 1027 TGRTVVCTIHQPSIDIF---EAFDELFLM--KRGGYEIYVGP 1063
G+ V+ H D+ D + ++ + G Y I+ P
Sbjct: 277 EGKAVLVVEH----DLAVLDYLSDVIHVVYGEPGVYGIFSKP 314
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 45/225 (20%), Positives = 76/225 (33%), Gaps = 58/225 (25%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+ IVK + ++GP +GKTT + LAG+L P+L +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSW--------- 152
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP-DPDIDVF 253
D I E + + +D+
Sbjct: 153 ---------DNVIRAFRGNELQ---------------NYFERLKNGEIRPVVKPQYVDLL 188
Query: 254 MKALATEGQEASVVT--------DYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGE 305
K A +G+ ++ + V+K L L+ D + +SGG+ +RV
Sbjct: 189 PK--AVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAA 241
Query: 306 MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVI 348
L+ A F DE S+ LD ++ ++I L G AV+
Sbjct: 242 ALLRKAHFYFFDEPSSYLDIRQRLKV----ARVIRRLANEGKAVL 282
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 49/264 (18%), Positives = 101/264 (38%), Gaps = 47/264 (17%)
Query: 810 ANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTA 869
+ SG+V + + + + K +L +S G
Sbjct: 5 HHHHHSSGLVPRGSHMLIQLDQIGRM------------KQGKTIL-KKISWQIAKGDKWI 51
Query: 870 LMGVSGAGKTTLMDVLAGR--KTGGYITGNIKISGYPKKQETF------ARISGYCEQND 921
L G++GAGKTTL+++L T +G + + G + + I G+
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYSAETVRQHI-GFVSH-S 105
Query: 922 IH---SPNVTVYESLL---YSA--WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
+ V + ++ + + + D ++++LV ++ Q +G
Sbjct: 106 LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE----AHQLLKLVGMSAKAQQYIG- 160
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTVDTGRTV 1031
LST +++R+ IA L+ P ++ +DEP +GLD A ++ + + +
Sbjct: 161 ----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAM 216
Query: 1032 VCTIHQPSIDIFEAFDELFLMKRG 1055
+ H +I F ++ L+K G
Sbjct: 217 IYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 53/267 (19%), Positives = 95/267 (35%), Gaps = 67/267 (25%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE--- 190
TILK ++ + +L G +GKTTLL L + SG V G +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGY 90
Query: 191 ----------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
FV + V + + S + +G + +
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEG------ERVIDVVI-SGAFKSIG--------VYQDID 135
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
D ++ A + ++K++G+ A +G +S G+++R
Sbjct: 136 DE-----------IRNEAHQ----------LLKLVGMSAKAQQYIGY-----LSTGEKQR 169
Query: 301 VTTGEMLVGPALA-----LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355
V ++ AL L +DE + GLD +++ L + A+I +
Sbjct: 170 V-----MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224
Query: 356 ETYDLFDDIILISEGQIVFQGPREHVL 382
E F I+L+ +GQ + QG E +L
Sbjct: 225 EITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-19
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L G + G + ++G +G GKTT + +LAG T G I ++ ++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
I TVYE L D + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLSKI-------DASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1031
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1032 V 1032
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-11
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 40/189 (21%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNIKISGYPKK--QETFARISGY 916
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 917 CEQNDIH----SPNV---------TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
+I V V E L LEE+++ +EL
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELL------------KKADETGKLEEVVKALEL 148
Query: 964 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
+ + + LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 149 ENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 1024 TVDTGRTVV 1032
+ G++V+
Sbjct: 204 LSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 58/295 (19%), Positives = 105/295 (35%), Gaps = 84/295 (28%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
+ L+ G +K + ++GP GKTT + LAG +P+ G++ ++
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ PQ YI E TV E L+ ++ + ++N
Sbjct: 351 --YKPQ----YIKAD----YEGTVYELLS----------------KIDASKLNSNFY--- 381
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
T+ ++K LG+ D V + +SGG+ +RV L+
Sbjct: 382 ------------------KTE-LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA-VISLLQPAPETYDLF------ 361
A +DE S LD + ++R ++ TA V+ +D+
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYVS 469
Query: 362 DDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQE--VTSKKDQQQY 414
D +++ EG+ G L R+G+ FL +T ++D
Sbjct: 470 DRLMVF-EGEPGKYG---RALPPM-------GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 64/233 (27%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
R + +VK + ++GP +GK+T + LAG+L P+L +
Sbjct: 30 RYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL-------CGDN--- 79
Query: 190 EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKD--ANIKP- 246
D I E + + + +KP
Sbjct: 80 -----------DSWDGVIRAFRGNELQNY---------------FEKLKNGEIRPVVKPQ 113
Query: 247 ----DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
P + + + + V+K L L+ + + +SGG+ +RV
Sbjct: 114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQH-----LSGGELQRV- 167
Query: 303 TGEMLVGPALA-----LFMDEISTGLDSSTTFQIVTSLRQIIHIL--NGTAVI 348
+ AL F DE S+ LD + I L G +V+
Sbjct: 168 ----AIAAALLRNATFYFFDEPSSYLDIRQRLNA----ARAIRRLSEEGKSVL 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETF 910
L +G + G + ++G +G GKTT +L G G +T +I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
+ + TV + +L T F EE+ + + L+ L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V + LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1031 VVCTI 1035
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 56/302 (18%), Positives = 100/302 (33%), Gaps = 82/302 (27%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
+K L NG K + +LGP GKTT L G++ G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+Y Q + TV++ L
Sbjct: 333 ---------SYKPQRIFPNYDGTVQQYLE------------------------------- 352
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+ AL+T + V K L L ++ V D +SGG+ +++ L
Sbjct: 353 --NASKDALSTSSWFF----EEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA-VISLLQPAPETYDLF------ 361
A +D+ S+ LD + + +++++ +I +DL
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHDYIA 453
Query: 362 DDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQE--VTSKKDQQQYWVRKE 419
D II+ +G+ G + + G+ +FL+E VT ++D + R
Sbjct: 454 DRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETGRPRVN 502
Query: 420 EP 421
+
Sbjct: 503 KI 504
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGY------ 916
+ + ++G +G GKTT++ +LAG + N K K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 917 -----CEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
E +H Y S + + R +E+ EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNE--ILTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 1032 VCTIH 1036
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 37/214 (17%), Positives = 67/214 (31%), Gaps = 38/214 (17%)
Query: 137 LKDVN-GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL-KLSGRVTYNGHNMDEFVPQ 194
K K + + +LG GKTT+L LAG++ P+ + +V + + F +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGK 72
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
Y + + S EL K ++
Sbjct: 73 EIYNYF----------------------KELYS-----NELKIVHKIQYVEYASKFLKGT 105
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALAL 314
+ D V ++L + + +SGG +R+ L+ A
Sbjct: 106 VNEILTKIDERGKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVY 160
Query: 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348
D+ S+ LD + + I +L VI
Sbjct: 161 IFDQPSSYLDVRERMNM---AKAIRELLKNKYVI 191
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 33/207 (15%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNIKISGYPKKQETFARISGYCEQND 921
G ++G +G+GKTTL+ ++G G I +++ R S +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI----RYSTNLPEA- 83
Query: 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP--LRQSLVGLPGVSGL 979
+ VTV + + ++ R +F E+++ ++L LR+ + L
Sbjct: 84 -YEIGVTVNDIVYL------YEELKGLDRDLF-LEMLKALKLGEEILRRK------LYKL 129
Query: 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039
S Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH--- 183
Query: 1040 IDIFEAF---DELFLMKRGGYEIYVGP 1063
++ + G
Sbjct: 184 -ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 71/277 (25%)
Query: 116 LIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL 175
+I+ N L + + L+++N V ++LGP SGKTTLL A++G L P
Sbjct: 1 MIQ-LKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY- 56
Query: 176 KLSGRVTYNGHNMDEFVPQ-RTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLV 233
SG + NG + + R + + + ++ +TV + + +G+
Sbjct: 57 --SGNIFINGMEVRKIRNYIRYSTNLPEAYEIG---VTVNDIVYLYEELKGLD------- 104
Query: 234 ELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293
+ L E ++K L L + L +
Sbjct: 105 ---------------------RDLFLE----------MLKALKL----GEEILRRKLYKL 129
Query: 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353
S GQ V T L + +DE +D++ I + I ++
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI----SRYIKEYGKEGILV---- 181
Query: 354 APETYD------LFDDIILISEGQIVFQ-GPREHVLE 383
T++ + G + +LE
Sbjct: 182 ---THELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 56/255 (21%), Positives = 96/255 (37%), Gaps = 67/255 (26%)
Query: 826 SLTFEDV--VYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 883
+ +V ++ P E K L VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 884 VLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSP-----NVTVYESLLYS 936
++AG T +G++ G KK R G Q P V++
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQY----PEDQFFAERVFD----- 98
Query: 937 AWLRLPPDVDSETRRMF-------LEEIMELVELNPLRQSL--VGLPGVS-------GLS 980
+V F + + LV ++++ VGL S LS
Sbjct: 99 -------EV------AFAVKNFYPDRDPVPLV-----KKAMEFVGLDFDSFKDRVPFFLS 140
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
+++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE- 199
Query: 1041 DIFEAFDELFLMKRG 1055
+ D + ++++G
Sbjct: 200 TVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 55/262 (20%), Positives = 99/262 (37%), Gaps = 72/262 (27%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
L++V+ ++ L+ G SGK+TLL +AG ++P+ SG V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 197 AAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMK 255
Q+ + V + +AF+ + N PD D
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVK---------------------NFYPDRD----PV 114
Query: 256 ALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG-----ISGGQRKRVTTGEMLVGP 310
L + ++ +GLD + + +SGG+++RV
Sbjct: 115 PLVKK----------AMEFVGLDF--------DSFKDRVPFFLSGGEKRRV--------- 147
Query: 311 ALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361
A+A L +DE GLD ++ + + G VI + +
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT--LGKTVILISHDIETVINHV 205
Query: 362 DDIILISEGQIVFQGPREHVLE 383
D ++++ +G+ VF G R LE
Sbjct: 206 DRVVVLEKGKKVFDGTRMEFLE 227
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 3e-15
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNIKISGYPKKQETFA 911
L G+S + + G +++G SG+GK+TL+ +L T G ++ +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 912 R---ISGYCEQ--NDIHSPNVTVYES----LLYSAWLRLPPDVDSETRRMFLEEIMELVE 962
R + G+ Q I P +T E+ +L + + E L+
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAK---ERGEYLLS 126
Query: 963 LNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+GL LS +++R+ IA L P ++F DEPT LD+ V
Sbjct: 127 E-------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSI 1040
M + G ++V H+ +
Sbjct: 180 MDIFLKINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 24/205 (11%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNIKISGYPK 905
++ + L V+ + G ++MG SG+GK+T+++++ + T G NIK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 906 KQETFAR---ISGYCEQ--NDIHSPNVTVYES----LLYSAWLRLPPDVDSETRRMFLEE 956
+ T R I G+ Q N I P +T E+ L++ + + E RR E
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIF----KYRGAMSGEERRKRALE 127
Query: 957 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
+++ EL + P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 1017 VMRTVRN-TVDTGRTVVCTIHQPSI 1040
+M+ ++ + G+TVV H ++
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 37/203 (18%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQ- 907
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 908 ------ETFARISGYCEQNDIHS-PNVTVYE-----------SLLYSAWLRLPPDVDSET 949
TF Q +TV E S L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 950 RRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1010 DARAAAIVMRTVRNTVDTGRTVV 1032
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 50/212 (23%), Positives = 78/212 (36%), Gaps = 45/212 (21%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
L V+ V +TL++GP SGK+TL+ + G L GRV + ++ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 197 AAY-IS---QHDVHI-GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
Y I Q EMTV E L C G + + +++ ++
Sbjct: 80 YHYGIVRTFQT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE------ 132
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
KA +++ L L D G+ +SGGQ K V E+ G A
Sbjct: 133 ---KAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EI--GRA 167
Query: 312 LA-----LFMDEISTGLDSSTTFQIVTSLRQI 338
L + MDE G+ I + ++
Sbjct: 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 50/224 (22%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYP--KKQETF 910
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 911 ARIS---GYCEQNDIHSPN-----VTVYESLLYSAWLRLPPDV----------DSETRRM 952
++ G Q+ P+ +VY+ DV + E R+
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQ------------DVSFGAVNMKLPEDEIRKR 123
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
++ ++ + L+ LS Q+KR+ IA LV P ++ +DEPT+GLD
Sbjct: 124 -VDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 1013 AAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ +M+ + + G T++ H + D +F+MK G
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 74/288 (25%)
Query: 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRT 196
LK +N +K +T +LG GK+TL G L PS SGR+ ++ +D ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 197 AAYISQH--------DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ + D + +V + ++F A + E+ +R +A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED-----EIRKRVDNA------ 127
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
+K G++ D +S GQ+KRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 309 GPALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD 359
A+A L +DE + GLD +I+ L ++ G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM-QKELGITIIIATHDIDIVPL 209
Query: 360 LFDDIILISEGQIVFQGPREHVL---EFFKSMGFECPKRKGVADFLQE 404
D++ ++ EG+++ QG + V E + + P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 5e-12
Identities = 110/761 (14%), Positives = 211/761 (27%), Gaps = 251/761 (32%)
Query: 92 HLNVEA--EAYVGGRALPTFF-NFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVK-PS 147
H++ E Y L F F N +C + K + ++++ I+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNF-----DCKDVQDMPKSILSK-EEIDHIIMSKD 59
Query: 148 R-------LTLLLGPPASGKTTLLLALAGKLDPS---LKLSGRVTYNGHNMDEFVPQRTA 197
LL + + + + L + L + +M T
Sbjct: 60 AVSGTLRLFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM------TR 110
Query: 198 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF-MKA 256
YI Q D + V F+ V SR ++L R+ ++P ++ + +
Sbjct: 111 MYIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLG 160
Query: 257 LATEGQEASVVTDYVIK-VLGLDVCADTMVGDEMLRGI---SGGQRKRVTTGEMLVGPAL 312
G K + LDVC V +M I + E ++
Sbjct: 161 S---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQ 203
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL---QPAPETYDLFDDIILISE 369
L +D + T + S + I + A + L +P + ++
Sbjct: 204 KLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QN 255
Query: 370 GQIVFQGPREHVLEFFKSMGFECP-----KRKGVADFLQEVTSKKDQQQYWVRKEEPYRF 424
+ + C + K V DFL T+
Sbjct: 256 AKAW------------NAFNLSCKILLTTRFKQVTDFLSAATTTH--------------- 288
Query: 425 VTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTKSYGINKKEL-LKACISRELL 483
+++ S TP D+ KS L K ++L + +
Sbjct: 289 ISLDHHSMTL--------------TP-DEVKS----LLLKYLDCRPQDLPREVLTTNPRR 329
Query: 484 LMKRNSFVYIFKLIQLTITGVISMTLFFRTKMHRDSVTNGGIYVGALFFTIIMITFNGMA 543
L +I +I ++ ++ ++ D +T TII
Sbjct: 330 L----------SIIAESIRDGLATWDNWK-HVNCDKLT-----------TII-------- 359
Query: 544 ELSMSIAKL-PVFYKQR--DLRFYPAWAYGLPTWILKVPIAFVEVAVWVILNYYVIGFDP 600
S+ L P Y++ L +P A +P + + +W + +
Sbjct: 360 --ESSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSDV---- 404
Query: 601 NVGRAFKQYLLLVLVNQMSSGLFRLMAATGRSMVVANTFGSFAMLVLFALGGFVLSREDI 660
MVV N ++++
Sbjct: 405 --------------------------------MVVVNKLHKYSLV--------------- 417
Query: 661 KKWWKWAYWCSPLMY------AQNGLAVNEFLGNSWQ--KVLPNSTEPLGVEVLKSRGFF 712
+K K + P +Y +N A++ + + + K +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-------- 469
Query: 713 TDAYWYW-----LGMAGLAGSILLFNFGFILALSFLNPFGSQAVISEESQSNECDNRTGG 767
D Y+Y L + LF F L FL Q + + + N +
Sbjct: 470 -DQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFL----EQKIRHDSTAWNASGSILNT 523
Query: 768 TLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDI 808
QL ++ +D + R N+ L EE++
Sbjct: 524 LQQLKF---YKPYICDNDPKYE--RLVNAILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 5e-11
Identities = 96/572 (16%), Positives = 182/572 (31%), Gaps = 135/572 (23%)
Query: 54 IDKLVKVADVDNEQLLL------KLKNRVDR-VGISL-PEIEVRFEHLNVEAEAYVGGRA 105
ID ++ D + L L K + V + V L + + E +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR----QPS 106
Query: 106 LPT-FFNFCANLIEGFLNCLHILP----SRKKKFTILKDVNGIVKPSRLTLLLGPPASGK 160
+ T + + + N + SR + + L+ ++P++ L+ G SGK
Sbjct: 107 MMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 161 TTLLLALAGKLDPSLKLSGRV---TYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRE 214
T + L + K+ ++ N E V Q+ I + + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 215 TLAFSARCQGVGSRYDMLVELSRREKDA-----NIKPDPD-IDVFM---KALATEGQEAS 265
L R + + L++ S+ ++ N++ + + F K L T +
Sbjct: 224 KL----RIHSIQAELRRLLK-SKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQ- 276
Query: 266 VVTDYVI----KVLGLDVCADTMVGDEMLR------GISGGQRKRVTTGEML-VGP-ALA 313
VTD++ + LD + T+ DE+ R E+L P L+
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRRLS 331
Query: 314 LFMDEISTGLDSSTTFQIVTS--LRQIIHILNGTAVISLLQPAPETYDLFDDI------I 365
+ + I GL + ++ V L II + +++L+PA E +FD +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTII-----ESSLNVLEPA-EYRKMFDRLSVFPPSA 385
Query: 366 LISE-------GQIVFQGPREHVLEFF-KSMGFECPKRK--GVADFLQEVTSKKDQQ--- 412
I ++ V + S+ + PK + E+ K + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 413 ------QYWVRKEEP-------------YRFV-----------TVKEFSDAFQAFH-VGQ 441
Y + K Y + + F F F + Q
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 442 KL-GDGLRTPFDKSKSHPAALTT-KSYGINKKELLKACISRELLLMKRNSFVYIF--KLI 497
K+ D T ++ S S L K Y K + E L+ F+ LI
Sbjct: 506 KIRHDS--TAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 498 QLTITGVISMTLFFRTKMHRDSVTNGGIYVGA 529
T ++ + L + I+ A
Sbjct: 561 CSKYTDLLRIALMAE---------DEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 6e-09
Identities = 78/456 (17%), Positives = 135/456 (29%), Gaps = 143/456 (31%)
Query: 749 QAVISEESQSNECD------NRTGGTLQLSTCGSSSSHLTQSDESR-----DNIRRRNST 797
++++S+E E D + GTL+L L E + + R N
Sbjct: 43 KSILSKE----EIDHIIMSKDAVSGTLRLFWT------LLSKQEEMVQKFVEEVLRINYK 92
Query: 798 SQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVV----YSVDMPQEM-KLQGVL---- 848
+ E QP + E + D Y+V Q KL+ L
Sbjct: 93 FLMSPIKTEQ---RQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI---KISGYP 904
K VL++G + G+GKT + +DV K + I +
Sbjct: 149 PAKNVLIDG-------------VL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 905 KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN 964
+ + Q D PN T + LR+ + +E RR+ +
Sbjct: 194 SPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRI-HSIQAELRRLLKSK-------- 241
Query: 965 PLRQSLVGLPGVSG-------------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL-D 1010
P L+ L V L T + K++T + A + I +D + L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTP 300
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSH 1070
+++++ + V T + P
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTN--------------------------PR------ 328
Query: 1071 LISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDIYKGSELYRRNKALIEEL 1130
+S I+DG ATW D +L ++ + L
Sbjct: 329 RLSIIAE-----SIRDG--LATW---------------DNWKHVNCDKLTTIIESSLNVL 366
Query: 1131 SKPAPGSRDLY-----FPTQYSQSFFTQCMACLWKQ 1161
+PA R ++ FP S T ++ +W
Sbjct: 367 -EPA-EYRKMFDRLSVFP--PSAHIPTILLSLIWFD 398
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 5e-04
Identities = 47/330 (14%), Positives = 90/330 (27%), Gaps = 91/330 (27%)
Query: 569 YGLPTWILKVPIAFVEVAVWVILNYYVIGFDP--NVGRAFKQYLL--LVLVNQMSSGLFR 624
Y +++ PI + ++ Y+ D N + F +Y + L ++ L
Sbjct: 91 YK---FLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 625 L----------MAATGRSMVVANTFGSFAMLVLFALGGFVLSREDIKKWWKWAYWCSP-- 672
L + +G++ V + S+ + F W SP
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---------WLNLKNCNSPET 197
Query: 673 LMYAQNGLAVNEFLGNSWQKVLPNSTEPLGVEVLKS--RGFFT-----------DAYWYW 719
++ L N + +S L + +++ R
Sbjct: 198 VLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN- 255
Query: 720 LGMAGLAGSILLFNFG-FILALS-------FLNPFGSQAVISEESQSN------------ 759
A + FN IL + FL+ + + +
Sbjct: 256 ------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 760 --ECDN-------RTGGTLQLSTCGSS-SSHLTQSDESRDNIRRRNSTSQSLSLTEEDIA 809
+C T +LS S L D + + +T SL + A
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 810 ANQPKRSGMVLPFEPLSLTFEDVVYSVDMP 839
+ F+ LS+ F S +P
Sbjct: 370 EYRKM-------FDRLSV-FPP---SAHIP 388
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 6e-11
Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 30/164 (18%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNIKISGYPKKQETFAR 912
LLN + + G +G GK+TLM +A + G+ T +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT------------ 497
Query: 913 ISGYCEQN-DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
Y E + D + +V + + + T+ +++ + ++
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP 545
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 16/128 (12%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
+ D+N S ++GP +GK+TL+ L G+L P SG V N
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYT-HENC------- 736
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMK 255
AYI QH E + +T + + + R+ + ++ + D + K
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPS-----EYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 256 ALATEGQE 263
EG
Sbjct: 792 IFKIEGTP 799
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 42/249 (16%)
Query: 820 LPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 879
L F+ + FE+V +S D + L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYA-----------DGRETL-QDVSFTVMPGQTLALVGPSGAGKS 94
Query: 880 TLM-------DVLAGRKTGGYITGNIKISGYPKKQETFA---RISGYCEQNDIHSPNVTV 929
T++ D+ +G I+I G Q T A G Q D N T+
Sbjct: 95 TILRLLFRFYDISSGC---------IRIDGQDISQVTQASLRSHIGVVPQ-DTVLFNDTI 144
Query: 930 YESLLYSAWLRLPPDVDSETRRMFLEE-IMELVELNPLR-QSLVGLPGVSGLSTEQRKRL 987
+++ Y +V++ + + + IM P ++ VG G+ LS +++R+
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF----PEGYRTQVGERGLK-LSGGEKQRV 199
Query: 988 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047
IA ++ P II +DE TS LD + ++ V RT + H+ S + A D
Sbjct: 200 AIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-D 256
Query: 1048 ELFLMKRGG 1056
++ ++K G
Sbjct: 257 QILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
Query: 282 DTMVGDEMLRG--ISGGQRKRVTTG-EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQI 338
T VG+ RG +SGG+++RV +L P + + +DE ++ LD+S I SL ++
Sbjct: 181 RTQVGE---RGLKLSGGEKQRVAIARTILKAPGI-ILLDEATSALDTSNERAIQASLAKV 236
Query: 339 IHILNGTAVI-----SLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383
N T ++ S + A D I++I +G IV +G E +L
Sbjct: 237 CA--NRTTIVVAHRLSTVVNA-------DQILVIKDGCIVERGRHEALLS 277
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 9e-11
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 72/222 (32%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKIS 901
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 902 GYPKK---------------QET--FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944
G+ Q+ R ++ +++ + P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----PG 109
Query: 945 VDSETRRMFLEEIMELVEL-------NPLRQ---SLVGLPGVSGLSTEQRKRLTIAVELV 994
+ +E+++ +L + LR+ ++VG G LS QR+R+ IA LV
Sbjct: 110 MS-------VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALV 161
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 2e-04
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 61/253 (24%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
IL ++N +K + ++G SGK+TL + P +G+V +GH++ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 195 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDM-LVELSRREKDANIKPDPDI 250
R + Q D + ++ + ++ + M + ++ K A
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA--------NPGMSVEKVIYAAKLAGA------ 124
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGEMLV 308
F+ L EG Y +T+VG+ +G SGGQR+R+ LV
Sbjct: 125 HDFISELR-EG--------Y-----------NTIVGE---QGAGLSGGQRQRIAIARALV 161
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPETYDLFDD 363
L DE ++ LD + I+ ++ +I T +I S ++ A D
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNA-------DR 212
Query: 364 IILISEGQIVFQG 376
II++ +G+IV QG
Sbjct: 213 IIVMEKGKIVEQG 225
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 29/237 (12%)
Query: 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 885
++ F DV +S + L ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 886 AGRKTGGY-ITGNIKISGYPKKQETFA---RISGYCEQNDIHSPNVTVYESLLYSAWLRL 941
R Y G+IKI G + I G Q D N T+ ++LY
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQ-DTILFNETIKYNILYGKLDAT 121
Query: 942 PPDVDSETRRMFLEE-IMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 999
+V T+ L + I L P + ++VG G+ LS +R+R+ IA L+ +P I
Sbjct: 122 DEEVIKATKSAQLYDFIEAL----PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKI 176
Query: 1000 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056
+ DE TS LD++ + + V + + RT++ H+ S I A + + L+ +G
Sbjct: 177 VIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 57/268 (21%), Positives = 106/268 (39%), Gaps = 78/268 (29%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF--- 191
LK +N + L+G SGK+T+ L D G + G N++++
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE----GDIKIGGKNVNKYNRN 89
Query: 192 --------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
VPQ D + T++ + + G E+ + K A
Sbjct: 90 SIRSIIGIVPQ---------DTILFNETIKYNILY-------GKLDATDEEVIKATKSAQ 133
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRV 301
+ F++AL + + DT+VG+ +G+ SGG+R+R+
Sbjct: 134 L------YDFIEAL-PKK--------W-----------DTIVGN---KGMKLSGGERQRI 164
Query: 302 TTGEMLV-GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAP 355
L+ P + + DE ++ LDS T + ++ + N T +I S + A
Sbjct: 165 AIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLSTISSA- 220
Query: 356 ETYDLFDDIILISEGQIVFQGPREHVLE 383
+ IIL+++G+IV +G + +L+
Sbjct: 221 ------ESIILLNKGKIVEKGTHKDLLK 242
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 9e-10
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 45/199 (22%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKKQ 907
L +S +P + A G SG GK+T+ AG I I G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 908 ETFA----RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL 963
+ +I G+ Q D T+ E+L Y L D E++ ++++L
Sbjct: 69 ISLENWRSQI-GFVSQ-DSAIMAGTIRENLTYG----LEGDYT-------DEDLWQVLDL 115
Query: 964 NPLRQSLVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
R + +P GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1014 AAIVMRTVRNTVDTGRTVV 1032
++V + + +++ GRT +
Sbjct: 175 ESMVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 68/256 (26%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ- 194
IL+D++ +P+ + GP GK+T+ L P+ +G +T +G +D +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 195 -RTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE-----KDANIKPD 247
R+ ++SQ D I T+RE L + G D + + A
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTY-------GLEGD----YTDEDLWQVLDLAF---- 117
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGE 305
F++ + + +T VG+ RG+ SGGQR+R+
Sbjct: 118 --ARSFVENMP-DQ--------L-----------NTEVGE---RGVKISGGQRQRLAIAR 152
Query: 306 MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLLQPAPETYDL 360
+ L +DE + LDS + + +L ++ T ++ S + A
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDA------ 204
Query: 361 FDDIILISEGQIVFQG 376
D I I +GQI G
Sbjct: 205 -DKIYFIEKGQITGSG 219
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 60/222 (27%), Positives = 89/222 (40%), Gaps = 48/222 (21%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKKQ 907
L G++ + G AL+G SG GK+T + D L G + I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 908 ETF----ARISGYCEQNDIHSP---NVTVYESLLYSAWLRLPPDVDSE-----TRRMFLE 955
I G Q P T+ E++ Y DV + +
Sbjct: 457 INVRYLREII-GVVSQE----PVLFATTIAENIRYGR-----EDVTMDEIEKAVKEANAY 506
Query: 956 E-IMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
+ IM+L P + +LVG G LS Q++R+ IA LV NP I+ +DE TS LD +
Sbjct: 507 DFIMKL----PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
A+V + GRT + H+ S + A D + G
Sbjct: 562 EAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 48/223 (21%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKKQ 907
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 908 ETFARISGYCEQNDIHS--P---NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME--- 959
+ Q I S P + ++ E++ Y R+ EEI+
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRAAK 1146
Query: 960 LVELNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
++ SL VG G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ +V + + GRT + H+ S I A D + +++ G
Sbjct: 1206 SEKVVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 86/441 (19%), Positives = 149/441 (33%), Gaps = 109/441 (24%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
PSRK+ ILK +N VK + L+G GK+T + + DP G V+ +G +
Sbjct: 398 PSRKEV-QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQD 453
Query: 188 MDEFVPQ--RTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANI 244
+ + R +SQ V + T+ E + + G + E+ + K+AN
Sbjct: 454 IRTINVRYLREIIGVVSQEPV-LFATTIAENIRY-------GREDVTMDEIEKAVKEAN- 504
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVT 302
F+ L + DT+VG+ RG SGGQ++R+
Sbjct: 505 -----AYDFIMKLP-HQ--------F-----------DTLVGE---RGAQLSGGQKQRI- 535
Query: 303 TGEMLVGPALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI----- 348
A+A L +DE ++ LD+ + + +L + T ++
Sbjct: 536 --------AIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRL 585
Query: 349 SLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSK 408
S ++ A D I G IV QG + ++ KG+ + + V +
Sbjct: 586 STVRNA-------DVIAGFDGGVIVEQGNHDELMR-----------EKGI--YFKLVMT- 624
Query: 409 KDQQQYWVRKEEPYRFVTVKEFSDAFQAFHVGQKLGDGLRTPFDKSKSHPAALTTK--SY 466
Q E K+ D R KS P K +
Sbjct: 625 ---QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTK 681
Query: 467 GINKKELLKACISRELLLMKRNSFVYIFKLIQLTITGVIS----------MTLFFRTKMH 516
+++ A R L L ++ + I G + + +F
Sbjct: 682 EALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPP 741
Query: 517 RDSVTNGGIYVGALFFTIIMI 537
N ++ +L F I+ I
Sbjct: 742 ETQRQNSNLF--SLLFLILGI 760
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 62/308 (20%), Positives = 101/308 (32%), Gaps = 107/308 (34%)
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
+R T L + + L ++G GK++LL AL ++D K+ G V G
Sbjct: 14 ARSDPPT-LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG--- 66
Query: 189 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS-----RYDMLVELSRREKDAN 243
+ AY+ Q I ++RE + F G Y +++ D
Sbjct: 67 -------SVAYVPQQ-AWIQNDSLRENILF-------GCQLEEPYYRSVIQACALLPDLE 111
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRV 301
I P D T +G+ +G+ SGGQ++RV
Sbjct: 112 ILPSGD--------------------------------RTEIGE---KGVNLSGGQKQRV 136
Query: 302 TTGEMLVGPALA----------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI--- 348
+LA LF D +S +D+ I ++ +L I
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 349 ---SLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405
S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 406 TSKKDQQQ 413
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 913 ISGYCEQNDIHSP---NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LR- 967
++ Y Q N ++ E++L+ + + +++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 968 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1021
++ +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1022 -RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 869 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQNDIHSP 925
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985
+++VY ++ Y LR V+ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDAR 1012
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 56/264 (21%), Positives = 95/264 (35%), Gaps = 79/264 (29%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQ------HD 204
LLGP +GK+ L +AG + P G V NG ++ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 205 VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEA 264
++V +A+ R V E RR ++
Sbjct: 85 -----LSVYRNIAYGLR--NVERV-----ERDRRVREM---------------------- 110
Query: 265 SVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLD 324
+ LG+ + D +SGG+R+RV LV L +DE + +D
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 325 SSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD------LFDDIILISEGQIVFQGPR 378
T ++ LR + + + T+D L D++ ++ G+IV +G
Sbjct: 159 LKTKGVLMEELRFVQREFDVPILHV-------THDLIEAAMLADEVAVMLNGRIVEKGKL 211
Query: 379 EHVLEFFKSMGFECPKRKGVADFL 402
+ + K VA+FL
Sbjct: 212 KELFS---------AKNGEVAEFL 226
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPK 905
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G +++ P
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP 84
Query: 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
++ R G QN ++TVY+++ + + P + + R + E++ + L
Sbjct: 85 QK----RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLES 137
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 138 YANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
++ V+ ++ + LLGP SGKTT+L +AG P+ G V G + +
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLP 83
Query: 193 P-QRTAAYISQHDV---HIGEMTVRETLAFSARCQGV 225
P +R + Q+ H MTV + ++F R + V
Sbjct: 84 PQKRNVGLVFQNYALFQH---MTVYDNVSFGLREKRV 117
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 5e-08
Identities = 46/217 (21%), Positives = 74/217 (34%), Gaps = 71/217 (32%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKISGYPKK- 906
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 907 --------------QET--FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETR 950
QE F R + E++ Y +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGL-----TRTPTM-- 123
Query: 951 RMFLEEIMELVEL-------NPLRQ---SLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1000
EEI + + Q + VG G LS QR+ + +A L+ P ++
Sbjct: 124 ----EEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLL 178
Query: 1001 FMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1036
+D TS LDA V R + + RTV+
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 58/280 (20%), Positives = 106/280 (37%), Gaps = 78/280 (27%)
Query: 117 IEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL-DPSL 175
++ F + P+ +L+ + + P ++T L+GP SGK+T + AL L P+
Sbjct: 17 VK-FQDVSFAYPNHPNV-QVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPT- 72
Query: 176 KLSGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDML 232
G+V +G + ++ A + Q + + + RE +A+ G+ M
Sbjct: 73 --GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL-LFGRSFRENIAY-----GLTRTPTM- 123
Query: 233 VELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292
E++ ++ F+ +G Y DT VG+ G
Sbjct: 124 EEITAVAMESG------AHDFISGFP-QG--------Y-----------DTEVGE---TG 154
Query: 293 I--SGGQRKRVTTGEMLVGPALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHI 341
SGGQR+ V ALA L +D ++ LD+ ++ L +
Sbjct: 155 NQLSGGQRQAV---------ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 342 LNGTAVI-----SLLQPAPETYDLFDDIILISEGQIVFQG 376
+ T ++ SL + A I+ + EG + QG
Sbjct: 206 ASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 98/271 (36%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
+LKD+N ++ +L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGS-----RYDMLVELSRREKDANIKPDPDI 250
++ SQ I T++E + F G RY +++ + E+D + + D
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYDEYRYRSVIKACQLEEDISKFAEKD- 120
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGEMLV 308
+ ++G+ GI SGGQR R+
Sbjct: 121 -------------------------------NIVLGE---GGITLSGGQRARI------- 139
Query: 309 GPALA----------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI------SLLQ 352
+LA L LD T +I S + ++ I L+
Sbjct: 140 --SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESC--VCKLMANKTRILVTSKMEHLK 194
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLE 383
A D I+++ EG F G +
Sbjct: 195 KA-------DKILILHEGSSYFYGTFSELQN 218
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 55/219 (25%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L ++ G L A+ G +GAGKT+L+ ++ G + G IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 913 ISGYCEQNDIHSP---NVTV---------YESLLYSAWLR---LPPDVDSETRRMFLEEI 957
IS +C Q T+ Y+ Y + ++ L D+ F
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDIS-----KF---- 116
Query: 958 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
+ ++G G++ LS QR R+++A + + + +D P LD
Sbjct: 117 -------AEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ + + +T + + ++ + D++ ++ G
Sbjct: 169 IFESCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 42/184 (22%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKIS 901
++ L ++ G AL+G SG+GK+T+ D+ G I +
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMD 403
Query: 902 GYPKKQETFA---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI- 957
G+ ++ T A Q ++H N TV ++ Y+ + S E+I
Sbjct: 404 GHDLREYTLASLRNQVALVSQ-NVHLFNDTVANNIAYAR-----TEEYSR------EQIE 451
Query: 958 --------MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
M+ + +++G GV LS QR+R+ IA L+ + I+ +DE TS
Sbjct: 452 EAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 1009 LDAR 1012
LD
Sbjct: 511 LDTE 514
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 38/179 (21%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNIKIS 901
K+V L+ V+ G ++G SGAGKTT M ++AG + G + N K+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 902 GYPKKQET---FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIM 958
P+ ++ F Q PN+T +E++ + + R +EE+
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 959 ELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 68/202 (33%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM---- 188
K L +VN ++ +LGP +GKTT + +AG PS +G + ++ +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNG 73
Query: 189 DEFVP--QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
VP R + Q + +T E +AF +
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKM--------------- 112
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML----RGISGG 296
+I ++ +A K+L + +L R +SG
Sbjct: 113 -----SKEEIRKRVEEVA--------------KILDI---------HHVLNHFPRELSGA 144
Query: 297 QRKRVTTGEMLVGPALALFMDE 318
Q++RV LV L +DE
Sbjct: 145 QQQRVALARALVKDPSLLLLDE 166
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 51/266 (19%), Positives = 97/266 (36%), Gaps = 89/266 (33%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
+LKD+N ++ +L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMK 255
++ SQ + I T++E + + + RY +++ + E+D + + D
Sbjct: 100 RISFCSQ-NSWIMPGTIKENIIGVSYDE---YRYRSVIKACQLEEDISKFAEKD------ 149
Query: 256 ALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI--SGGQRKRVTTGEMLVGPALA 313
+ ++G+ GI SGGQR R+ +LA
Sbjct: 150 --------------------------NIVLGE---GGITLSGGQRARI---------SLA 171
Query: 314 ----------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI------SLLQPAPET 357
L LD T +I S + ++ I L+ A
Sbjct: 172 RAVYKDADLYLLDSPFG-YLDVLTEKEIFESC--VCKLMANKTRILVTSKMEHLKKA--- 225
Query: 358 YDLFDDIILISEGQIVFQGPREHVLE 383
D I+++ EG F G +
Sbjct: 226 ----DKILILHEGSSYFYGTFSELQN 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 54/218 (24%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L ++ G L A+ G +GAGKT+L+ ++ G + G IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 913 ISGYCEQNDIHSP---NVTV--------YESLLYSAWLR---LPPDVDSETRRMFLEEIM 958
IS +C Q + T+ Y+ Y + ++ L D+ F
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDIS-----KF----- 145
Query: 959 ELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+ ++G G++ LS QR R+++A + + + +D P LD +
Sbjct: 146 ------AEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ + +T + + ++ + D++ ++ G
Sbjct: 199 FESCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKIS 901
D++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 902 GYPKKQETFA---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET-----RRMF 953
G+ K G +Q D + TV E++L P E +
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQ-DNILFSDTVKENILLGR-----PTATDEEVVEAAKMAN 455
Query: 954 LEE-IMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
+ IM L P + VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 456 AHDFIMNL----PQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
Query: 1012 R 1012
Sbjct: 511 E 511
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKIS 901
+K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 902 GYPKKQETFA---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET-----RRMF 953
G+ + R Q ++H N T+ ++ Y+A + E R+
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQ-NVHLFNDTIANNIAYAA----EGEYTREQIEQAARQAH 458
Query: 954 LEE-IMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
E I + P +++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 459 AMEFIENM----PQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDT 513
Query: 1012 R 1012
Sbjct: 514 E 514
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 57/232 (24%)
Query: 826 SLTFEDVV--YSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 883
+T +D+ Y+ +L +S + PG L+G +G+GK+TL+
Sbjct: 19 QMTVKDLTAKYTEGGN------------AIL-ENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 884 VLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS-------PNVTVY--ESLL 934
G I+I G S V + +
Sbjct: 66 AFLRLL---NTEGEIQIDGV-----------------SWDSITLEQWRKAFGVIPQKVFI 105
Query: 935 YSAWLRL---PPDVDSETRRMFLEEIMELVELNPLRQSLVG------LPGVSGLSTEQRK 985
+S R P S+ + ++ + V L + + G + G LS ++
Sbjct: 106 FSGTFRKNLDPNAAHSDQE---IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
+ +A +++ I+ +DEP++ LD I+ RT++ TV+ +
Sbjct: 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 5e-07
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKK 906
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 907 QETFARISGYCEQNDIHSP-------NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
I+ P +TVYE+L+ A+ R D E + LE I
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 960 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1019 RTVRNTVDTGRTV 1031
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+K ++ V ++ L+G +GKTT L A+AG + G++ +NG ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKP 74
Query: 193 PQRTAAY-ISQHDV----HI-GEMTVRETL 216
I+ V I E+TV E L
Sbjct: 75 AHVINRMGIAL--VPEGRRIFPELTVYENL 102
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
LN +S + PG + ++G SG GKTTL+ LAG + G I+ I
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 912 RISGYCEQNDIHS--PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R GY Q P++TVY ++ Y R I ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 970 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 56/296 (18%), Positives = 96/296 (32%), Gaps = 100/296 (33%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE--- 190
+L D++ + P + ++G GKTTLL LAG P SG ++ +G +
Sbjct: 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNT 73
Query: 191 FVP--QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242
+P +R Y+ Q H +TV +A+ ++
Sbjct: 74 NLPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKG----------RTAQERQ 117
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
I+ L + G+ A E+ SGGQ++R
Sbjct: 118 RIE---------AMLE---------------LTGISELAGRYP-HEL----SGGQQQRA- 147
Query: 303 TGEMLVGPALA---------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353
ALA + +DE + LD QI + + +AV
Sbjct: 148 --------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV---- 195
Query: 354 APETYD------LFDDIILISEGQIVFQG-PREHVLEFFKSMGFECPKRKGVADFL 402
++D D I ++ +G+I+ P E + P A F+
Sbjct: 196 ---SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 979 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1033 CTIHQPSIDIFEAFDELF-LMKRGGY 1057
H ++ +A D + + G
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGS 332
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
LN VS G + ++G SGAGK+TL+ + R T G + +++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 912 RIS-GYCEQ--NDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
R G Q N + S TV+ ++ L L + + + + EL+
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LEL-DNTPKDEVK---RRVTELLS------ 149
Query: 969 SLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LVGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 150 -LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-04
Identities = 56/309 (18%), Positives = 104/309 (33%), Gaps = 77/309 (24%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
+ L +V+ V ++ ++G +GK+TL+ + P+ G V +G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 91
Query: 188 MDEFVPQRTAAY------ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKD 241
+ I QH + TV +A + E
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PKDEVK 141
Query: 242 ANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRV 301
+ ++ ++GL D+ + +SGGQ++RV
Sbjct: 142 RRVTE------------------------LLSLVGLGDKHDSYPSN-----LSGGQKQRV 172
Query: 302 TTGEMLVGPALA-----LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI-----SLL 351
+ ALA L D+ ++ LD +TT I+ L+ I L T ++ ++
Sbjct: 173 A-----IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227
Query: 352 QPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQ 411
+ + D + +IS G+++ Q V E F PK F+Q
Sbjct: 228 K------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQSTLHLDIP 273
Query: 412 QQYWVRKEE 420
+ Y R +
Sbjct: 274 EDYQERLQA 282
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 59/203 (29%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL-SGRVTYNGHNMDEFVP- 193
ILK VN +V + L+GP +GK+TL LAG P + G + +G N+ E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQ------GVGSRYDMLVELSRREKDANIKPD 247
+R + LAF Q GV + + L R A + +
Sbjct: 76 ERARKGL--------------FLAF----QYPVEVPGV-TIANFL----RLALQAKLGRE 112
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR-----GISGGQRKRVT 302
+ F + +++L D + L G SGG++KR
Sbjct: 113 VGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNE 153
Query: 303 TGEMLV-GPALALFMDEISTGLD 324
++LV P A+ +DE +GLD
Sbjct: 154 ILQLLVLEPTYAV-LDETDSGLD 175
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 51/193 (26%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNIKISG---------- 902
L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDE 76
Query: 903 -----------YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRR 951
YP E + G VT+ L + +L +V
Sbjct: 77 RARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 952 MFLEEIMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
+++ +EL++ + L + L G G G ++KR I LV P+ +DE SG
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVLDETDSG 173
Query: 1009 LDARAAAIVMRTV 1021
LD A +V R V
Sbjct: 174 LDIDALKVVARGV 186
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL----- 966
+ QN P++ V ++L + +R+ + R + + +++ L
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHLLDRNP 125
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 126 LT----------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 132 KKF--TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
+K+ L +++ V+ ++LGP +GKT L +AG P SGR+ +G ++
Sbjct: 9 RKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVT 65
Query: 190 EFVP-QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGV 225
+ P + A++ Q H M V++ L F R + +
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI 102
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNIKISGY----- 903
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 904 -PKKQET---FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
PK + F QN P++TVY+++ + LR P + + + + E+ +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1017
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 1018 MRT 1020
+R
Sbjct: 172 VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 67/199 (33%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
FT L ++N +K LLGP SGK+TLL +AG P+ SG++ ++ ++ E
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELP 71
Query: 193 PQ-RTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
P+ R + Q H MTV + +AF +
Sbjct: 72 PKDRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA-------------------- 105
Query: 246 PDPDID--VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML----RGISGGQRK 299
P +ID V +E + K+L + D++L +SGGQ++
Sbjct: 106 PREEIDKKV---------REVA-------KMLHI---------DKLLNRYPWQLSGGQQQ 140
Query: 300 RVTTGEMLVGPALALFMDE 318
RV LV L +DE
Sbjct: 141 RVAIARALVKEPEVLLLDE 159
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 53/202 (26%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKL-SGRVTYNGHNMDEFVP- 193
IL+ ++ V P + ++GP SGK+TL LAG+ ++ G V + G ++ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 194 QRTAAYI---SQHDVHIGEMTVRETL--AFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
R I Q+ V I ++ + L A +A G L R +
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG-----QETLDRFD--------- 138
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR-----GISGGQRKRVTT 303
F + + I +L + +++L G SGG++KR
Sbjct: 139 ----FQDLMEEK-----------IALLKMP--------EDLLTRSVNVGFSGGEKKRNDI 175
Query: 304 GEMLV-GPALALFMDEISTGLD 324
+M V P L + +DE +GLD
Sbjct: 176 LQMAVLEPELCI-LDESDSGLD 196
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 57/194 (29%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNIKISG---------- 902
L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G ++ G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPED 93
Query: 903 -----------YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW-----LRLPPDVD 946
YP E I G V+ L +A R +D
Sbjct: 94 RAGEGIFMAFQYP--VE----IPG-----------VSNQF-FLQTALNAVRSYRGQETLD 135
Query: 947 SETRRMFLEEIMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003
+ +EE + L+++ L +S+ VG G G ++KR I V P + +D
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQMAVLEPELCILD 189
Query: 1004 EPTSGLDARAAAIV 1017
E SGLD A +V
Sbjct: 190 ESDSGLDIDALKVV 203
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 870 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNIKISGY------PKKQE---TFARISGYCEQ 919
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 920 NDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979
+ P++TVYE++ + ++ P + + R + EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1020
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 46/199 (23%)
Query: 841 EMKLQGV--LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GN 897
+++ + K+ ++GVS + G AL+G SG GKTT + +LAG T G
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGE 59
Query: 898 IKISGY------PKKQET---FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSE 948
I PK +E F QN P++TV+E++ + R + E
Sbjct: 60 IYFDDVLVNDIPPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVE 111
Query: 949 TRRMFLEEIMELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1003
R + EI + ++ L Q LS Q++R+ +A LV P ++ D
Sbjct: 112 KR---VVEIARKLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFD 158
Query: 1004 EPTSGLDA--RAAAIVMRT 1020
EP S LDA R MR
Sbjct: 159 EPLSNLDANLRMI---MRA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 47/199 (23%), Positives = 70/199 (35%), Gaps = 67/199 (33%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
K + V+ VK LLGP GKTT LL LAG P+ SG + ++ +++
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIP 71
Query: 193 P-QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIK 245
P R + Q H MTV E +AF R + +
Sbjct: 72 PKYREVGMVFQNYALYPH------MTVFENIAFPLRARRI-------------------- 105
Query: 246 PDPDID--VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML----RGISGGQRK 299
+++ V E + + L + D +L +SGGQ++
Sbjct: 106 SKDEVEKRV---------VEIA-------RKLLI---------DNLLDRKPTQLSGGQQQ 140
Query: 300 RVTTGEMLVGPALALFMDE 318
RV LV L DE
Sbjct: 141 RVALARALVKQPKVLLFDE 159
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1044
RL +++ L S++ +DEPT LD ++ + + V+ H
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE----- 124
Query: 1045 AFDELFLMKRGGYEIYVGPLG 1065
L + I +
Sbjct: 125 ------LKDAADHVIRISLEN 139
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 32/202 (15%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L GVS R G + +++G SG+GK+T + + + + G I N + + ++ +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 913 ISGYCEQNDIHS------------PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMEL 960
++ + + + ++TV E+++ + P V ++ E ++
Sbjct: 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERALKY 136
Query: 961 VELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
+ VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 137 LAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1015 AIVMRTVRNTVDTGRTVVCTIH 1036
V+R ++ + G+T+V H
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH 211
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 22/149 (14%)
Query: 140 VNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAY 199
+ +V + L+ P +GK+ L L LA +++G +P Y
Sbjct: 24 LPNMV-AGTVGALVSPGGAGKSMLALQLA------AQIAGGPDLLEV---GELPTGPVIY 73
Query: 200 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALAT 259
+ E R +G+ R+ + P I +A
Sbjct: 74 LP------AEDPPTA---IHHRLHALGAHLS---AEERQAVADGLLIQPLIGSLPNIMAP 121
Query: 260 EGQEASVVTDYVIKVLGLDVCADTMVGDE 288
E + +++ LD + +E
Sbjct: 122 EWFDGLKRAAEGRRLMVLDTLRRFHIEEE 150
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 22/191 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L G++ R G + ++G SG+GK+T + L G I I +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 912 RISGYCEQNDIHSPNVTVYESL-LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
G Q P++TV ++ L +R P +E + MEL++
Sbjct: 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE------AKAMELLDK------- 146
Query: 971 VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
VGL LS Q +R+ IA L P I+ DEPTS LD V+ ++
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 1026 DTGRTVVCTIH 1036
+ G T+V H
Sbjct: 207 NEGMTMVVVTH 217
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 870 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNIKISGYPKKQETFARISGYCE---------- 918
L+G SG GKTT + ++AG + + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 919 QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978
Q+ P++TVY+++ + LR P + + R + E+ EL+ L L L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRKPR--E 139
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1020
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1425 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.98 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.85 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.85 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.84 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.84 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.83 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.83 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.81 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.8 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.79 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.79 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.78 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.74 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.73 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.72 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.72 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.71 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.71 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.71 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.71 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.71 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.69 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.68 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.67 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.67 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.66 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.66 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.66 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.63 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.63 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.63 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.62 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.61 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.6 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.59 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.58 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.58 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.57 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.56 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.55 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.54 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.53 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.53 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.53 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.53 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.51 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.5 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.5 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.49 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.49 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.48 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.48 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.48 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.47 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.47 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.46 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.46 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.46 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.45 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.44 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.44 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.44 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.43 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.43 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.41 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.41 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.4 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.4 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.38 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.38 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.36 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.35 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.34 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.34 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.32 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.3 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.29 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.29 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.29 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.27 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.27 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.27 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.26 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.26 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.23 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.22 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.22 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.21 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.21 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.21 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.21 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.19 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.19 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.18 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.18 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.18 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.13 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.13 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.12 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.12 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.11 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.11 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.11 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.1 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.1 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.1 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.09 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.07 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.07 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.04 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.04 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.04 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.03 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.02 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.01 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.0 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.0 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.97 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.95 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.95 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.95 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.95 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.94 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.94 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.94 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.93 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.92 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.9 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.87 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.84 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.83 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.82 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.82 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.82 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.81 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.79 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.77 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.75 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.75 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.73 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.73 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.72 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.64 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.62 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.62 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.58 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.58 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.56 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.55 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.55 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.53 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.53 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.53 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.51 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.48 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.47 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.47 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.44 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.42 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.41 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.4 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.37 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.34 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.33 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.32 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.3 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.29 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.28 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.28 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.27 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.25 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.24 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.23 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.23 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.21 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.21 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.17 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.14 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.12 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.07 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.05 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.02 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.94 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.93 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.93 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.92 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.91 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.82 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.8 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.79 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.75 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.75 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.71 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.71 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.71 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.7 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.69 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.67 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.67 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.66 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.63 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.56 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.55 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.5 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.46 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.41 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.39 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.39 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.37 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.37 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.37 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.34 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.33 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.32 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.31 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.29 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.29 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.28 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.24 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.22 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.18 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.18 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.18 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.18 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.17 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.17 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.16 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.16 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.16 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.16 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.16 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.15 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.1 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.09 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.09 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.09 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.06 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.06 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.97 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.92 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.92 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.9 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.88 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.88 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.87 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.84 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.82 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.82 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.82 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.81 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.73 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.72 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.61 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.6 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.58 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.58 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.56 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.55 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.53 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.52 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.49 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.48 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.48 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.42 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.4 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.39 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.36 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.36 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.35 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.35 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.33 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.33 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.3 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.28 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.25 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.23 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.23 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.2 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.19 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.17 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.15 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.13 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.11 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.01 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.0 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.99 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.99 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.96 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.94 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.9 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.89 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.84 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.83 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.81 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.78 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.78 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.77 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.74 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.69 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.66 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.66 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.65 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.64 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.63 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.63 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.63 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.58 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 95.58 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.56 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.54 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.54 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.52 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.5 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.45 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.41 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.41 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.29 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.29 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.29 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.26 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.24 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.22 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.21 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.14 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.1 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.06 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.02 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.02 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.99 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.98 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.96 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.9 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.88 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.85 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.75 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.74 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.73 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.7 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 94.68 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.67 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.63 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.62 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.59 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.59 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.57 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.55 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.5 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.45 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.44 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.41 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.38 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.33 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.28 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.28 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.25 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.2 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.18 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.16 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.16 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.11 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.08 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.08 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.07 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.03 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 93.97 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 93.97 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 93.91 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 93.88 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 93.87 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 93.85 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.77 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 93.77 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.73 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 93.71 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 93.65 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 93.62 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.62 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-73 Score=777.80 Aligned_cols=215 Identities=27% Similarity=0.373 Sum_probs=180.8
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+||+++|+. ....++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1075 g~I~f~nVsf~Y~~----------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPE----------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTT----------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCC----------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 36999999999852 123469999999999999999999999999999999999765 347999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
+++ ..+|+.++||||++.+|.. |++|||.|+. .|.+.+++ .++++++..++.+. .|+.+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 4578889999999998865 9999997642 12333333 36777888777543 56677754
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++ ....||+|+||++
T Consensus 1215 -G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 -GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSN 1290 (1321)
T ss_dssp -SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESS
T ss_pred -CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4899999999997 4577999999986
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++.+|+.
T Consensus 1291 -G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 -GTIIEKGTH 1299 (1321)
T ss_dssp -SSEEEEECH
T ss_pred -CEEEEECCH
Confidence 689999986
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-67 Score=712.15 Aligned_cols=214 Identities=26% Similarity=0.366 Sum_probs=173.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.|+.. .+.++|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 59999999988521 12468999999999999999999999999999999999866 3589999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 975 (1425)
+. ...++.+|||+|++.++ ..||+||+.++... ...+.++ +.+.++..++.+ -.|+.+|..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCC-
Confidence 53 34567899999999776 56999999764311 1223332 344455555433 345666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
...||||||||++|||+|+++|+||+|||||||||+.+++.|++.|++.. +|+|||+++|+++. + ..||||++|++
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~- 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQN- 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEET-
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999998864 59999999999974 4 66999999996
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 789999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-57 Score=568.66 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=165.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ + ..|+++|+++++||++||+|||||||||||++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 477888876552 1 268899999999999999999999999999999997653 3577654
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.+.+||++|+....+.+||.|++....... ...++.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 235899999988778899999886531100 011345788999999988877764 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeC-CcEEEEECC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGP 1063 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~-Gg~~~y~G~ 1063 (1425)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|.|||+++||+. .+...+|++++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999987 46999999999986 57788999999983 256778898
Q ss_pred CCC
Q 047682 1064 LGR 1066 (1425)
Q Consensus 1064 ~~~ 1066 (1425)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-57 Score=562.95 Aligned_cols=202 Identities=24% Similarity=0.301 Sum_probs=165.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 477788776552 1 368899999999999999999999999999999997653 3577764
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.+.+||++|+....+.+||.|++........ . .++.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2358999999887788999998864311010 0 1245678899999987777664 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC-CcEEEEECC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGP 1063 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~-Gg~~~y~G~ 1063 (1425)
||+||++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++||+. ++...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999986 57789999999984 256778898
Q ss_pred CCC
Q 047682 1064 LGR 1066 (1425)
Q Consensus 1064 ~~~ 1066 (1425)
+.+
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-55 Score=563.61 Aligned_cols=184 Identities=18% Similarity=0.233 Sum_probs=148.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCC-CCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHD-VHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 212 (1425)
+.+|+|+|+++++|++++|+||||||||||||+|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12478999973 67889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVGDEMLR 291 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~ 291 (1425)
.|++.+ ...+ . ..+++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1100 0 12356788999995 55665554
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++ .++ +++.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~-tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGI-TSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCS-EEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCC-EEEEEECCHHHHHHhCCEEEEEECCe
Confidence 5999999999999999999999999999999999999999999886 244 45557899999999999999999999
Q ss_pred EE-EecChhHHH
Q 047682 372 IV-FQGPREHVL 382 (1425)
Q Consensus 372 iv-~~G~~~~~~ 382 (1425)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 689887654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=548.34 Aligned_cols=216 Identities=20% Similarity=0.247 Sum_probs=169.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..++ + ..|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---
Confidence 467777765542 1 357778999999999999999999999999999997653 478888764
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
+.++|++|+....+..||+|++.+..... ... ....++++++.++|.+..+..+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDA--LST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSST--TCT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhc--cch----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 24799999877777899999998742111 011 1234688899999988877764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCC-cEEEEECC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GYEIYVGP 1063 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~G-g~~~y~G~ 1063 (1425)
||+|||+|+.+|+||+|||||+|||+.++..+++.|+++++ .|.|||+++||++ ++..+||||++|+++ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 577889999999842 34455555
Q ss_pred CCCCchhHHHHHhhC
Q 047682 1064 LGRHSSHLISYFEAI 1078 (1425)
Q Consensus 1064 ~~~~~~~~~~yf~~~ 1078 (1425)
+......+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 533223345565544
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=553.89 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=136.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCC----cccEEEECCcc
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLL---------------------LALAGKLDPSLK----LSGRVTYNGHN 187 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~ 187 (1425)
+.++|+|||++|++||+++|+||||||||||+ +++.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34589999999999999999999999999998 888888777621 25677777765
Q ss_pred CCCCCccceEEEEccCCC-------------------CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCC
Q 047682 188 MDEFVPQRTAAYISQHDV-------------------HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248 (1425)
Q Consensus 188 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 248 (1425)
.... +++.++||+|... .++.+||+||+.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 5332 2344556655432 24678999999874321100 000000
Q ss_pred ChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc-ccccccCcccccCChhhhhhHHHHHHHhcCCc--EeEEecCCCCCCh
Q 047682 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVC-ADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL--ALFMDEISTGLDS 325 (1425)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~--illLDEptsgLD~ 325 (1425)
.+. ...+.... ..+++.+||++. .++.++ .|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 172 -----~~~---~~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -----ARL---ILREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----HHH---HHHHHHHH-HHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000 00001111 236888999764 455554 599999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHH
Q 047682 326 STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVL 382 (1425)
Q Consensus 326 ~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 382 (1425)
.++..+++.|+++.+ .+ .+|+.++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g-~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LG-NTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TT-CEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999865 34 4555578887754 569999999 899999999987763
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=539.89 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=159.1
Q ss_pred eeeeceeEEEeCC-----eEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 047682 853 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNV 927 (1425)
Q Consensus 853 ~iL~~vs~~i~~G-----e~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 927 (1425)
.+++|+|+++++| |++||+||||||||||+++|+|..++. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCc
Confidence 4688899888888 789999999999999999999976532 4431 11 23589999997776678
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
||+|++... .+. .... ...++++++.++|.+..+..+ ..|||||||||+|||+|+.+|+||+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 1111 234678999999998888764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCC-cEEEEECCCCCCchhHHHHHhhC
Q 047682 1008 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GYEIYVGPLGRHSSHLISYFEAI 1078 (1425)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G-g~~~y~G~~~~~~~~~~~yf~~~ 1078 (1425)
|||+.++..+++.|++++ +.|.|||+++||+. ++..++||+++|+++ |+++..|++.+-......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 578889999999852 67889998854322323444444
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=392.68 Aligned_cols=207 Identities=22% Similarity=0.317 Sum_probs=181.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDVH 206 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 206 (1425)
..++|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999998 9999999999876542 3679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.|+.+..+.. ..+...+++++|+.+||++.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~----------------------------------~~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTP----------------------------------KDEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhcCChh
Confidence 99999999999986653311 01223457789999999987776554
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
.|||||||||+|||||+.+|++|||||||||||+.++..|++.|+++.+..+. +|+.++|+..++.++||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~-Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL-TILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC-EEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999999765554 455578999999999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=430.73 Aligned_cols=196 Identities=26% Similarity=0.410 Sum_probs=145.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHH---------hhhcCCCC--C--ceEE------EEEEEcCccCCccc-----
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIT------GNIKISGYPKKQET----- 909 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------~~l~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 909 (1425)
.|+|||++|++|++++|+|+||||||||+ +.+.+... + .... +.+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 68999999999999999999999999997 33333211 1 0122 33555544321100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 047682 910 ---------------------------------------FARISGYCEQNDIHSP------------------------- 925 (1425)
Q Consensus 910 ---------------------------------------~~~~~gyv~Q~~~~~~------------------------- 925 (1425)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665554
Q ss_pred -------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCC-
Q 047682 926 -------NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 997 (1425)
Q Consensus 926 -------~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p- 997 (1425)
.+||.|++.|... . .....+.++++.+||.... .|.+ +..|||||||||.||++|+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3688888877431 1 1223467889999996532 2222 4579999999999999999875
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCC
Q 047682 998 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1064 (1425)
Q Consensus 998 --~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~ 1064 (1425)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. +||++++.|++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999985 456799999993 47899999986
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=391.63 Aligned_cols=218 Identities=22% Similarity=0.284 Sum_probs=190.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++.. .+...+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48999999888521 1235799999999999999999999999999999999997663 589999999886
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 906 KQE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 906 ~~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
... ..++.+||++|++.+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..+.. +..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 431 23567999999999999999999999987654 345666778899999999999888776 4579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|++++++ |.|||++||+++ .+.++||||++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 57789999999996 689
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999986
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=389.40 Aligned_cols=207 Identities=21% Similarity=0.346 Sum_probs=179.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC----CCCCc-cceEEEEccCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM----DEFVP-QRTAAYISQHDVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~Q~d~~~~ 208 (1425)
.++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999987 22222 467999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.+||+||+.|+.+..+... .+...+++++++.+||++..|..++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-- 137 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH-- 137 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG--
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh--
Confidence 9999999999865432110 1123457789999999988776554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..+||+|++|+
T Consensus 138 ---~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g-~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 138 ---ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG-KSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHCCEEEEEE
Confidence 5999999999999999999999999999999999999999998888766554 455558999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|+++..|+++++.+
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998853
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.31 Aligned_cols=220 Identities=23% Similarity=0.329 Sum_probs=184.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. ...+.+|+|||++|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 5778888877421 1134699999999999999999999999999999999997663 5899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-ccccCCCCCCc
Q 047682 907 QET-------FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-QSLVGLPGVSG 978 (1425)
Q Consensus 907 ~~~-------~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~ 978 (1425)
... .++.+||++|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+.. +.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1245999999999999999999999977654323345566677789999999998743 554 457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.+|++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 4588999999997 68
Q ss_pred EEEECCCC
Q 047682 1058 EIYVGPLG 1065 (1425)
Q Consensus 1058 ~~y~G~~~ 1065 (1425)
++..|+..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 88888763
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=391.31 Aligned_cols=207 Identities=25% Similarity=0.384 Sum_probs=182.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
.++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876654 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. ..+.+.+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 99999987654311 0122346788999999998777655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+..+.| ++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~t-ii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE-EEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999997655555 45579999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998853
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=391.04 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=190.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 378899988773 35799999999999999999999999999999999998763 489999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHH
Confidence 43 233567999999999999999999999987655 345667778899999999999988876 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+||||||+||+..+..+++.|+++.++ |.|||++||+++ ++..++|||++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 68899999999997 68899998
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 218 ~~ 219 (381)
T 3rlf_A 218 PL 219 (381)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=389.87 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=186.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++++++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 378899988773 35799999999999999999999999999999999998763 489999999875
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 906 ----KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 906 ----~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 234567999999999999999999999976443 2344556678999999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
|||||||+|||||+.+|++|||||||||||+.++..+++.|+++. +.|.|||++|||++ ++..++|||++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887765 46999999999986 68889999999996 6889
Q ss_pred EECCCC
Q 047682 1060 YVGPLG 1065 (1425)
Q Consensus 1060 y~G~~~ 1065 (1425)
..|++.
T Consensus 219 ~~g~~~ 224 (359)
T 3fvq_A 219 QTASPH 224 (359)
T ss_dssp EEECHH
T ss_pred EEeCHH
Confidence 999863
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=378.94 Aligned_cols=216 Identities=25% Similarity=0.375 Sum_probs=186.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 488999998873 224599999999999999999999999999999999997653 489999999886
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 906 K--Q---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 906 ~--~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
. . ..+++.+||++|++. .+..+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 234567999999863 445789999999987543 3456666778999999999998888764 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999997 47788999999996 688
Q ss_pred EEECCCC
Q 047682 1059 IYVGPLG 1065 (1425)
Q Consensus 1059 ~y~G~~~ 1065 (1425)
++.|+..
T Consensus 223 ~~~g~~~ 229 (275)
T 3gfo_A 223 ILQGNPK 229 (275)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999863
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=367.46 Aligned_cols=212 Identities=22% Similarity=0.283 Sum_probs=182.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 78889988763 25699999999999999999999999999999999997653 4899999998764
Q ss_pred cc------ccc-ceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 907 QE------TFA-RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~~------~~~-~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
.. .++ +.+||++|++.+++.+||+||+.+....+ ....++.++.++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 31 122 56999999999999999999999876543 2334445567899999999998877764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
|||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+ +.+|++++|++ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 34 88999999997 6888
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
+.|+.
T Consensus 219 ~~g~~ 223 (224)
T 2pcj_A 219 GEITR 223 (224)
T ss_dssp EEEEC
T ss_pred EEeee
Confidence 88863
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=374.06 Aligned_cols=213 Identities=26% Similarity=0.346 Sum_probs=184.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 25 l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESS
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 88999998773 34699999999999999999999999999999999998653 4899999998763
Q ss_pred --c---ccccceEEEeecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 --Q---ETFARISGYCEQNDIHSPNVTVYESLLYSA-WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 --~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. ..+++.+||++|++.+++.+||+||+.|.. ..+ ....++.++.++++++.++|.+..+..+ ..||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCC
Confidence 1 123567999999999999999999999864 332 2334455667899999999998877763 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 239 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIE 239 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57778999999997 68888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 240 ~g~~ 243 (263)
T 2olj_A 240 EGKP 243 (263)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=415.83 Aligned_cols=195 Identities=28% Similarity=0.357 Sum_probs=148.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc-C----C-----CCCc---eEEE------EEEEcCccCCccc-----
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NIKISGYPKKQET----- 909 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~-g----~-----~~~~---~~~G------~i~i~g~~~~~~~----- 909 (1425)
.|+|||++|++||++||+|+||||||||+++|. | . ...| .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 589999999999999999999999999999964 1 0 1122 2344 5888887652110
Q ss_pred -----------------ccceEEEeecCCCCC------------------------------------------------
Q 047682 910 -----------------FARISGYCEQNDIHS------------------------------------------------ 924 (1425)
Q Consensus 910 -----------------~~~~~gyv~Q~~~~~------------------------------------------------ 924 (1425)
..+..||++|...+.
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013347777643221
Q ss_pred ------CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHHHHHHHHHHHhhCC
Q 047682 925 ------PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 997 (1425)
Q Consensus 925 ------~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p 997 (1425)
..+||.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 14688888876321 1 11 123568899999986 44544 4579999999999999999865
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCC
Q 047682 998 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1064 (1425)
Q Consensus 998 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~ 1064 (1425)
+||+|||||+|||+.+...+++.|++++++|.|||+++|++. ..+.+|+|++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999988999999999985 347899999994 46788998875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=374.54 Aligned_cols=213 Identities=22% Similarity=0.265 Sum_probs=183.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 78899988773 34699999999999999999999999999999999998653 4899999998764
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCccc-cc
Q 047682 907 Q----------------ETFARISGYCEQNDIHSPNVTVYESLLYSA-WLRLPPDVDSETRRMFLEEIMELVELNPL-RQ 968 (1425)
Q Consensus 907 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~ 968 (1425)
. ..+++.+||++|++.+++.+||+||+.++. ..+ ..+.++.++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123567999999999999999999999864 322 23344556678999999999987 77
Q ss_pred cccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCE
Q 047682 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 969 ~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
.. +..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+
T Consensus 149 ~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 66 3579999999999999999999999999999999999999999999999877999999999986 57778999
Q ss_pred EEEEeCCcEEEEECCC
Q 047682 1049 LFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1049 v~~l~~Gg~~~y~G~~ 1064 (1425)
+++|++ |+++..|+.
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999997 688888875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=370.56 Aligned_cols=214 Identities=24% Similarity=0.328 Sum_probs=184.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 488999988773 35699999999999999999999999999999999997653 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++.+||++|++.+++.+||+||+.+....+ ....++.++.++++++.++|.+..+..+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 234567999999999999999999999876443 1233444567889999999998887764 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986 46677999999997 68888887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=373.30 Aligned_cols=206 Identities=25% Similarity=0.344 Sum_probs=175.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-----CccceEEEEccCC-CCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHD-VHIG 208 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 208 (1425)
.+|+|||++|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++... ..++.+|||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999998 99999999988421 1246799999985 3556
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.+||+||+.|+....+.. ..+...+++++++.+||++..+..++
T Consensus 99 ~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLP----------------------------------EDEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp SSBHHHHHHHHHHTSCCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred cCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 899999999986543210 01123457789999999988776554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+. +|+.++|+..++.++||+|++|+
T Consensus 143 ---~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~-tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 143 ---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI-TIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC-EEEEEESCCSSGGGGCSEEEEEE
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC-EEEEEecCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998733444 45557889999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999998754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=365.22 Aligned_cols=207 Identities=22% Similarity=0.273 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc-------ceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ-------RTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~d~~ 206 (1425)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 99999999998765432 359999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc-ccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC-ADTMV 285 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~v 285 (1425)
++.+||+||+.++......... . ..+...++.++++.+||.+. .+..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------S------------------------GEERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------C------------------------HHHHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------C------------------------HHHHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999997653211000 0 01123346678999999764 35444
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+.. ..++||+|+
T Consensus 144 -----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~-vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 144 -----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV-VTHDIN-VARFGERII 216 (235)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE-ECSCHH-HHTTSSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EcCCHH-HHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999997654555555 677776 568999999
Q ss_pred EEcCCeEEEecChhHH
Q 047682 366 LISEGQIVFQGPREHV 381 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~ 381 (1425)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=382.75 Aligned_cols=207 Identities=27% Similarity=0.394 Sum_probs=180.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+. .+ .+.+.+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~----------~~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRI----------SK------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCS----------HH------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 9999998643221 00 112345778999999998877655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS-VYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE-EEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555554 4578999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=369.11 Aligned_cols=204 Identities=26% Similarity=0.355 Sum_probs=178.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999998 9999999999876543 35699999998888899
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++...... .+...+++.+++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999997542110 0112346778999999888776554
Q ss_pred ccCChhhhhhHHHHHHHhc------CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 291 RGISGGQRKRVTTGEMLVG------PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~------~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.|||||||||+|||||+. +|++|||||||+|||+.++.++++.|+++++. ++++|+.++|+..++.++||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 599999999999999999 99999999999999999999999999998764 4556666899999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=372.69 Aligned_cols=217 Identities=25% Similarity=0.288 Sum_probs=183.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899988773 34699999999999999999999999999999999998663 489999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 047682 906 KQE----TFARISGYCEQNDIHSPNVTVYESLLYSAWL-RLPP---------DVDSETRRMFLEEIMELVELNPLRQSLV 971 (1425)
Q Consensus 906 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 971 (1425)
... ..++.+||++|++.+++.+||+||+.+.... +... .....+.++.++++++.+||.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999999999999999886532 1110 0122344566889999999998887764
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE
Q 047682 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051 (1425)
Q Consensus 972 g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~ 1051 (1425)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 47788999999
Q ss_pred EeCCcEEEEECCC
Q 047682 1052 MKRGGYEIYVGPL 1064 (1425)
Q Consensus 1052 l~~Gg~~~y~G~~ 1064 (1425)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 997 688888876
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=366.50 Aligned_cols=206 Identities=20% Similarity=0.335 Sum_probs=174.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC--CCC---ccceEEEEccCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD--EFV---PQRTAAYISQHDVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 208 (1425)
+++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 999999999874 111 1356999999998999
Q ss_pred CCCHHHHHHhhh-hhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 209 EMTVRETLAFSA-RCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 209 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
.+||+||+.|+. +..+.. + .+...+++.+++.+||++..+..++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 158 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHAYPD- 158 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred CCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCChh-
Confidence 999999999864 222110 0 0112346778999999887776554
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+. + ++|+.++|+..++.++||+|++|
T Consensus 159 ----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-G-MTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-C-CEEEEEcCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998654 4 45555789999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 047682 368 SEGQIVFQGPREHVLE 383 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~~ 383 (1425)
++|++++.|+++++.+
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=360.57 Aligned_cols=200 Identities=26% Similarity=0.354 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 45999999999999999999999999999999999999998 9999999998865432 1569999999989
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.++....+.. + .+....++++++.+||++..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999875432210 0 0112346778999999887776554
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|+ ++|+..++ ++||+|++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~-vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVM-VTHERELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE-ECSCHHHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-EcCCHHHH-HhCCEEEE
Confidence 59999999999999999999999999999999999999999999998764 555544 67777666 89999999
Q ss_pred EcCCeEEEecCh
Q 047682 367 ISEGQIVFQGPR 378 (1425)
Q Consensus 367 L~~G~iv~~G~~ 378 (1425)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=382.34 Aligned_cols=216 Identities=24% Similarity=0.368 Sum_probs=188.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 588899987761 123589999999999999999999999999999999998763 489999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234577999999999999999999999987654 2345566678999999999999888764 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999755 999999999986 67889999999997 68889888
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 230 ~~ 231 (355)
T 1z47_A 230 PE 231 (355)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=381.97 Aligned_cols=207 Identities=25% Similarity=0.399 Sum_probs=180.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999876443 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. + .+.+.+++++++.+||++..+..+ ..
T Consensus 105 ~eni~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------K------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 99999986543210 0 112345778999999998877655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS-VFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE-EEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555554 5578999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 225 ~~~g~~~~l~~ 235 (355)
T 1z47_A 225 EQFGTPEEVYE 235 (355)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=382.89 Aligned_cols=213 Identities=26% Similarity=0.385 Sum_probs=186.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 77888887762 34699999999999999999999999999999999998663 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999986554 2345566678999999999998888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999755 999999999986 67889999999997 688898986
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=382.87 Aligned_cols=207 Identities=29% Similarity=0.443 Sum_probs=180.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. + .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------R------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 99999986543210 0 112345778999999998777655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE-EEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555554 4578999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 213 ~~~g~~~~~~~ 223 (362)
T 2it1_A 213 LQVGTPDEVYY 223 (362)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=383.02 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=185.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 67888887762 35699999999999999999999999999999999998663 4899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999875433 2333444567899999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 67889999999997 688999986
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 219 ~ 219 (359)
T 2yyz_A 219 D 219 (359)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=383.39 Aligned_cols=213 Identities=26% Similarity=0.348 Sum_probs=186.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECc
Confidence 77888888763 35699999999999999999999999999999999998663 4899999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 907 Q-------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~-------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 123567999999999999999999999987654 2345566678999999999999888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998755 999999999986 68889999999996 688
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
+..|++
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999986
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=411.96 Aligned_cols=195 Identities=27% Similarity=0.361 Sum_probs=144.3
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhh-hcCCC-------CC----------------ceEEE-------EEEEcC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYITG-------NIKISG 902 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~-l~g~~-------~~----------------~~~~G-------~i~i~g 902 (1425)
.|+|||++|++||++||+|+||||||||++. |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 5899999999999999999999999999997 76421 11 12467 788998
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 047682 903 YPKKQETF----------------------ARISGYCEQ----------------------NDIHSP------------- 925 (1425)
Q Consensus 903 ~~~~~~~~----------------------~~~~gyv~Q----------------------~~~~~~------------- 925 (1425)
.+...... .|..||.++ +..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 76532100 011122211 111111
Q ss_pred -------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCcCCHHHHH
Q 047682 926 -------------------NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 926 -------------------~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGqrq 985 (1425)
.+|+.|++.|.. .. ...+.+.++++.++|... .+.. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 245566554421 11 122357889999999863 3443 4579999999
Q ss_pred HHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcE
Q 047682 986 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGY 1057 (1425)
Q Consensus 986 Rl~ia~~L~~~---p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~ 1057 (1425)
||.||++|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|+|++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 7999999999999999999999999999988999999999985 35 8899999994 4678
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 8999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=381.92 Aligned_cols=207 Identities=26% Similarity=0.401 Sum_probs=173.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. + .+...+++++++.+||++..+..++ .
T Consensus 101 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLNRYPA-----Q 141 (372)
T ss_dssp HHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCChh-----h
Confidence 99999975432210 0 1123457789999999988776554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE-EEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555555 4478999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 221 ~~~g~~~~l~~ 231 (372)
T 1v43_A 221 LQIGSPTEVYL 231 (372)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=382.01 Aligned_cols=207 Identities=28% Similarity=0.404 Sum_probs=179.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC------CCc-cceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE------FVP-QRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999998 9999999998754 332 4679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.|+.+..+.. ..+...+++++++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCchHhcCCc-
Confidence 99999999999986543210 0112345778999999998877655
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT-IYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEE-EEECCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999876555555 4478999999999999999
Q ss_pred EcCCeEEEecChhHHHH
Q 047682 367 ISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~~ 383 (1425)
|++|+++..|+++++.+
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999998853
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=368.14 Aligned_cols=206 Identities=21% Similarity=0.295 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC----------CC------ccceE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE----------FV------PQRTA 197 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~~~ 197 (1425)
.++|+|||+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 35999999999999999999999999999999999999998 9999999998751 11 13569
Q ss_pred EEEccCCCCCCCCCHHHHHHhhh-hhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC
Q 047682 198 AYISQHDVHIGEMTVRETLAFSA-RCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG 276 (1425)
Q Consensus 198 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 276 (1425)
+||+|++.+++.+||+||+.++. +..+.. + .+...+++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 99999998999999999999864 221110 0 011234678899999
Q ss_pred Cccc-ccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 277 LDVC-ADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 277 L~~~-~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
|++. .+..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +. +|+.++|+..
T Consensus 142 L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~-tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GK-TMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC-CEEEECSCHH
T ss_pred CCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CC-EEEEEeCCHH
Confidence 9887 776554 59999999999999999999999999999999999999999999998653 44 4555789999
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 356 ETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 356 ~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
++.++||+|++|++|++++.|+++++.+
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999988753
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=378.20 Aligned_cols=208 Identities=25% Similarity=0.387 Sum_probs=167.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++.++ ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 35999999999999999999999999999999999999998 9999999999987653 46799999987766 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+|||.|+..... .+...+++...+ ....++ .++...+|.+|+.+
T Consensus 143 Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~------l~~~i~--~lp~gl~t~~~~~g- 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG-------------------------NDEVEAAAQAAG------IHDAIM--AFPEGYRTQVGERG- 188 (306)
T ss_dssp EHHHHHHTTSTTCC-------------------------HHHHHHHHHHHT------CHHHHH--HSTTGGGCEESTTS-
T ss_pred cHHHHHHhhcccCC-------------------------HHHHHHHHHHhC------cHHHHH--hccchhhhHhcCCc-
Confidence 99999998742110 011111111000 011111 24556788888654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||+.+|+||||||||+|||+.++..|.+.|+++.+ ++|+|+ ++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIV-VAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEE-ECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EEcChHHHHc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998853 455555 7788777765 9999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+|++.|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=364.77 Aligned_cols=213 Identities=23% Similarity=0.331 Sum_probs=180.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 378899988773 25699999999999999999999999999999999997653 489999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CccccccccCCCCCCcCC
Q 047682 906 KQE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE-LNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 906 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~lS 980 (1425)
... . .++.+||++|++.+++.+||+||+.+..... ...++.++.++++++.++ |.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 431 1 2345999999999999999999998864211 122334456788999995 88777665 45799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57789999999997 68888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=370.12 Aligned_cols=213 Identities=25% Similarity=0.326 Sum_probs=183.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 488899998773 35799999999999999999999999999999999997653 479999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
.. ...++.+||++|++.+++.+||+||+.++.... ...+.++.++++++.++|.+..+..+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 234567899999999888999999999875432 11233456889999999998887764 479999
Q ss_pred HHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 983 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 983 qrqRl~ia~~L~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
|||||+|||||+. +|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57789999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 6889999874
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=380.31 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=177.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC-----CC-ccceEEEEccCCCCCCC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE-----FV-PQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 209 (1425)
+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999998754 22 24679999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.|+.+..+.. + .+...+++++++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------K------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 99999999986543210 0 112345778999999998877655
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL-LVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEE-EEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999876555554 4478999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 047682 370 GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 G~iv~~G~~~~~~~ 383 (1425)
|+++..|+++++.+
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998853
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=362.97 Aligned_cols=206 Identities=25% Similarity=0.281 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++|+|||+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999876421 2357999999998999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.++....+.. . .+....++++++.+||++..++.++
T Consensus 105 v~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 145 (256)
T ss_dssp HHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCChh-----
Confidence 999999865432110 0 0112346778999999987776654
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+ .+ ++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g-~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EG-LTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CC-CEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 34 455557888889999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988854
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=382.92 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=186.2
Q ss_pred EEEecceeeeecchhhhhccccCCcee--eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
++++|+++.++ ++. +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 67888888773 234 99999999999999999999999999999999998663 48999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 905 KKQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 905 ~~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
... ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ ..
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234677999999999999999999999876443 3345566678999999999999888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 68889999999997 68
Q ss_pred EEEECCCC
Q 047682 1058 EIYVGPLG 1065 (1425)
Q Consensus 1058 ~~y~G~~~ 1065 (1425)
++..|++.
T Consensus 219 i~~~g~~~ 226 (353)
T 1oxx_K 219 LVQVGKPE 226 (353)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 88988863
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=382.61 Aligned_cols=214 Identities=22% Similarity=0.344 Sum_probs=180.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 78899988773 35699999999999999999999999999999999998663 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999875332 2345566678999999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999986 67889999999997 688898886
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 227 ~ 227 (372)
T 1v43_A 227 T 227 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=379.15 Aligned_cols=201 Identities=24% Similarity=0.358 Sum_probs=176.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999999876433 467999999999999999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.|+.+..+... . .+++++++.+||++..|..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999765322100 0 24677899999998877655 4699
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.| ++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t-ii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987655555 5557899999999999999999999999
Q ss_pred ecChhHHH
Q 047682 375 QGPREHVL 382 (1425)
Q Consensus 375 ~G~~~~~~ 382 (1425)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999884
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=365.53 Aligned_cols=216 Identities=25% Similarity=0.342 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|||+++++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998865432 3569999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++......+ .+.... + .. ... ...+....++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~~~~---~----~~-~~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLNSLF---Y----KK-WIP------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHHHHH---H----CS-SCC------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CcHHHHHHHHHhhhccC-cccccc---c----cc-ccC------------CHHHHHHHHHHHHHHcCCchhhCCCch---
Confidence 99999999864320000 000000 0 00 000 000112346788999999887776654
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +. +|+.++|+..++.++||+|++|++
T Consensus 153 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~-tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 153 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GI-TFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CC-EEEEEecCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998653 44 455578888899999999999999
Q ss_pred CeEEEecChhH
Q 047682 370 GQIVFQGPREH 380 (1425)
Q Consensus 370 G~iv~~G~~~~ 380 (1425)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999888
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=359.68 Aligned_cols=204 Identities=22% Similarity=0.333 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 45999999999999999999999999999999999999998 9999999999865432 2459999999989999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG-LDVCADTMVGDE 288 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~ 288 (1425)
+||+||+.++.... ... .+....++.+++.++ |++..++.+
T Consensus 96 ltv~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KDK----------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CCS----------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CCH----------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863110 000 011223566788884 877666554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.| |+.++|+..++.++||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-vi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTT-ILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEecCHHHHHHhCCEEEEEE
Confidence 45999999999999999999999999999999999999999999999865 3444 5557888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988774
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=376.28 Aligned_cols=210 Identities=21% Similarity=0.279 Sum_probs=181.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++ +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 56778877662 34 99999999999999999999999999999999998663 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+.. ... ++++++++.++|.+..+... ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998654321 111 56889999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.+ .|.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999975 4999999999986 68889999999986 678888876
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=363.90 Aligned_cols=217 Identities=22% Similarity=0.322 Sum_probs=179.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++... ...+.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 67888888773100 0015799999999999999999999999999999999998653 4899999998764
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc--cccccccCCCCCCcCCHHH
Q 047682 907 QETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN--PLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~g~~~~~~lSgGq 983 (1425)
...+++.+||++|++ ..++.+||+||+.+..... ...++.++.++++++.+||. +..+..+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 334456799999995 5667899999999864322 11112234578999999998 8777663 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+...+|++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999997 46678999999997 67888887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=359.91 Aligned_cols=218 Identities=25% Similarity=0.272 Sum_probs=174.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78889988773 25699999999999999999999999999999999997211256899999998764
Q ss_pred cc---cc-cceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-ccccccccCCCCCCc-CC
Q 047682 907 QE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL-NPLRQSLVGLPGVSG-LS 980 (1425)
Q Consensus 907 ~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~~g~~~~~~-lS 980 (1425)
.. .. ++.++|++|++.+++.+||+|++.+.............+.++.++++++.++| .+..+..+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 11 33589999999999999999999886532111112233445668899999999 57777664 35 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fD~v~~l~~Gg~~~ 1059 (1425)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999986 35556 599999997 6888
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 88875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=356.88 Aligned_cols=208 Identities=21% Similarity=0.311 Sum_probs=176.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ + +|+|||+++++ |++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 46778887662 1 49999999999 99999999999999999999998653 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...++.+||++|++.+++.+||+||+.|....+ . ....++.++++++.++|.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567899999999999999999998864321 1 1222566889999999988877764 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999754 999999999986 57788999999997 688888875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=365.95 Aligned_cols=218 Identities=22% Similarity=0.358 Sum_probs=178.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 589999998773 24699999999999999999999999999999999998663 489999999876
Q ss_pred C--c---ccccceEEEeecCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 906 K--Q---ETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 906 ~--~---~~~~~~~gyv~Q~~~~~--~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
. . ..+++.+||++|++.+. +.+||+||+.++...... .....++.++.++++++.++|.+..+..+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 457999999875321100 01112333566889999999998877764 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCccHHHHHhcCEEEEEeCC
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|| |++||+++ ++.+.+|++++|++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~- 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD- 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 799999999999999999999999999999999999999999999997669999 99999986 46678999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|++++.|+..
T Consensus 239 G~i~~~g~~~ 248 (279)
T 2ihy_A 239 GQSIQQGAVE 248 (279)
T ss_dssp TEEEEEEEHH
T ss_pred CEEEEECCHH
Confidence 6888888753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=354.64 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=173.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+|+|+|+++++ ++++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999998 999999999876432 2467999999998999999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.|+.+..+. . ....+++++++.+||++..+..++ .||
T Consensus 90 nl~~~~~~~~~----------~--------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------V--------------------------ERDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH----------H--------------------------HHHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC----------c--------------------------hHHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99986432110 0 002346778999999887776554 599
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
|||||||+|||||+.+|++++|||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++.++||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~-vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987644555544 6888889999999999999999999
Q ss_pred ecChhHHHH
Q 047682 375 QGPREHVLE 383 (1425)
Q Consensus 375 ~G~~~~~~~ 383 (1425)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=356.29 Aligned_cols=221 Identities=25% Similarity=0.291 Sum_probs=180.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999998772 3569999999999999999999999999999999999732225689999999875
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHHhh-cc---CCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 047682 906 KQE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAW-LR---LPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGV 976 (1425)
Q Consensus 906 ~~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 976 (1425)
... .. ++.+||++|++.+++.+||.|++.+... .+ .....+.++.++.++++++.++|. +..+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 421 11 2348999999999999999999987541 11 111233444456788999999996 46665532
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEeCC
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1055 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fD~v~~l~~G 1055 (1425)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999997
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 6888999863
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=356.25 Aligned_cols=205 Identities=24% Similarity=0.380 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCC-CCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHD-VHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 212 (1425)
+++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999998 999999998875432346799999984 56778999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc--ccccccccCccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD--VCADTMVGDEML 290 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~ 290 (1425)
+||+.|+.... ... .+...+++.+++.+||+ +..++.+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 01123467789999998 7776655
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. +. +|+.++|+..++..+||++++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~-tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GK-TVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHhCCEEEEEECC
Confidence 459999999999999999999999999999999999999999999998654 44 4555788888888999999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=350.93 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=173.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.+
T Consensus 5 l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEEE------
T ss_pred EEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE------
Confidence 78889988762 124699999999999999999999999999999999997653 4799872
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
++.+||++|++.+++.+||+||+.+....... ........++.++++++.++|.+..+.. +..|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHH
Confidence 35689999999999999999999986432111 0011233346688999999999887776 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999986 46788999999997 56 888875
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 213 ~ 213 (253)
T 2nq2_C 213 R 213 (253)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=357.10 Aligned_cols=210 Identities=25% Similarity=0.314 Sum_probs=170.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC--CCC---ccceEEEEccCCCCC-
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD--EFV---PQRTAAYISQHDVHI- 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~- 207 (1425)
+++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++. ... .++.++||+|++...
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 999999999875 332 236799999986533
Q ss_pred -CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 208 -GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 208 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
+.+||+||+.++..... ..+. .. ..+...+++++++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~--~~~~----------------~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI--GVYQ----------------DI------------DDEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC---------------------------C------------CHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc--cccc----------------CC------------cHHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999998632100 0000 00 00112346778999999887776654
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEE-EEEecChhhHHhhcCeEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAV-ISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~i-i~~~q~~~~~~~~~D~vi 365 (1425)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+. +.++|+..++.++||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 59999999999999999999999999999999999999999999998765 55651 457888888899999999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEETTEEEEEEEHHHHC
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999988763
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=362.81 Aligned_cols=211 Identities=26% Similarity=0.338 Sum_probs=174.5
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++ +.+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 4699999999874 234699999999999999999999999999999999997663 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 974 (1425)
+.. ..+++.+|||+|++.+++ .||+||+.|+.. .... +.++++++.+++.+.. ++.+|..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 654 245678999999998885 599999987532 1222 2356667777765533 3444433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|||+++|+++. + ..+|+|++|++
T Consensus 188 -g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~ 263 (306)
T 3nh6_A 188 -GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKD 263 (306)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEET
T ss_pred -cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 7999999999863 4 45999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 264 -G~iv~~G~~ 272 (306)
T 3nh6_A 264 -GCIVERGRH 272 (306)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 689999986
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=351.00 Aligned_cols=193 Identities=22% Similarity=0.343 Sum_probs=168.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
+|+|+|+++++||+++|+|||||||||||++|+|..+ +. |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 7999999999999999999999999999999999876 35 999999987532 23456799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc-------EEEEe
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1003 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~-------illLD 1003 (1425)
||+.+... + ... ++.++++++.++|.+..+.. +..||||||||++|||+|+.+|+ +|+||
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 34578999999999887765 35799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|||+|||+.++..+++.|+++.++|+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999877999999999986 46688999999996 678888875
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=348.61 Aligned_cols=200 Identities=26% Similarity=0.407 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999999876432 357999999887775 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc-------ccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC-------ADT 283 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~~t 283 (1425)
||+||+.++... . + ...++.+++.+|+.+. .++
T Consensus 98 tv~enl~~~~~~----~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANPG----M---------------------S---------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCTT----C---------------------C---------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCCC----C---------------------C---------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 999999885210 0 0 0012233444444432 234
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.++. ....|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. .+.|+|+ ++|+...+ +.||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tvii-vtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVII-IAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEE-ECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEE-EeCCHHHH-HhCCE
Confidence 4443 356799999999999999999999999999999999999999999999983 3555555 67776666 45999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 047682 364 IILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~ 382 (1425)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=349.69 Aligned_cols=211 Identities=26% Similarity=0.417 Sum_probs=173.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ .+++.+|+|||++|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEh
Confidence 588999998772 1134699999999999999999999999999999999998653 489999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL-------VGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~g~~~ 975 (1425)
.. ..+++.+||++|++.+++ .||+||+.+.. + ..+ ++.++++++.+++.+..+.. ++. .
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~ 142 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-Q 142 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-T
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-C
Confidence 43 234567999999998876 59999998742 1 122 23367788888887665543 222 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + +.+|++++|++
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~- 218 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK- 218 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999995 59999999999863 4 56999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 219 G~i~~~g~~ 227 (247)
T 2ff7_A 219 GKIVEQGKH 227 (247)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 688888875
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=356.92 Aligned_cols=214 Identities=22% Similarity=0.292 Sum_probs=172.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. +.+.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 48899999877310 124699999999999999999999999999999999998653 489999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCccccccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET-----RRMFLEEIMELV--ELNPLRQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~-----~~~~v~~~l~~l--~l~~~~~~~~g~~~ 975 (1425)
.. ..+++.+|||+|++.+++ .||+||+.+.... ....+. .+..++++++.+ |+.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 5999999875321 111011 122345667777 676665554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.+|++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 4899999999985 3356999999997
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 688888875
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=349.10 Aligned_cols=206 Identities=23% Similarity=0.305 Sum_probs=163.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK--LDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 207 (1425)
+++|+|||+++++|++++|+||||||||||+|+|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4599999999999999999999999999999999998 6777 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCC-cccccccc
Q 047682 208 GEMTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGL-DVCADTMV 285 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~~t~v 285 (1425)
+.+||+||+.++... .+.. . . ..+....++.+++.+|| ++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~--~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------V--G-----------VAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------C--C-----------HHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------C--C-----------HHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986421 1100 0 0 00112346778999999 46666555
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-cCeE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-FDDI 364 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~-~D~v 364 (1425)
++ +|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+ +|+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCEE
Confidence 32 2999999999999999999999999999999999999999999998843 3 44555577888888777 5999
Q ss_pred EEEcCCeEEEecChhH
Q 047682 365 ILISEGQIVFQGPREH 380 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~ 380 (1425)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=344.96 Aligned_cols=198 Identities=20% Similarity=0.288 Sum_probs=169.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ + .+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 588899988762 3 699999999999999999999999999999999997653 489999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ..++.+||++|++.+++.+||+||+.+....+.. ... ++.++++++.++|.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3567799999999999999999999987654321 111 3457889999999877 554 4579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|+++++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999999766899999999997 4667788887664
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=342.21 Aligned_cols=197 Identities=17% Similarity=0.242 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999998 999982 35799999998888899999
Q ss_pred HHHHhhhhhc-CCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 214 ETLAFSARCQ-GVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
||+.++.... +.... + . .....+++.+++.+||++..+..+ ..
T Consensus 85 enl~~~~~~~~~~~~~-----------------~--~------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------P--K------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------C--C------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999864321 10000 0 0 011234677899999988777655 45
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+. +|+.++|+..++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~-tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM-TVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC-EEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999998654344 45557888889999999999999999
Q ss_pred EEecChhHH
Q 047682 373 VFQGPREHV 381 (1425)
Q Consensus 373 v~~G~~~~~ 381 (1425)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998876
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=345.42 Aligned_cols=221 Identities=21% Similarity=0.257 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL--DPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 207 (1425)
+++|+|||++|++|++++|+||||||||||||+|+|.. +|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 35999999999999999999999999999999999984 566 9999999998765432 23499999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVG 286 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg 286 (1425)
+.+||+|++.+...... ... . .+..+ ..+...+++++++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~~-------------~~~--~-~~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR-------------SYR--G-QETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH-------------HGG--G-CCCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh-------------hhh--c-cccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987532100 000 0 00000 001123567889999996 45555443
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-cCeEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-FDDII 365 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~-~D~vi 365 (1425)
. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+ ||+|+
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEE
Confidence 1 4999999999999999999999999999999999999999999998743 3 44555578888777776 89999
Q ss_pred EEcCCeEEEecChhHHHHHHHhCCCC
Q 047682 366 LISEGQIVFQGPREHVLEFFKSMGFE 391 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~~F~~~G~~ 391 (1425)
+|++|++++.|+++++.. .+..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988754 3444443
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=348.22 Aligned_cols=210 Identities=27% Similarity=0.410 Sum_probs=172.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 56788887662 124689999999999999999999999999999999997653 4799999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCCCC
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV-------GLPGV 976 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-------g~~~~ 976 (1425)
. ..+++.+||++|++.+++ .||+||+.+... ..... +.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCCH----HHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998887 599999976421 11222 33678889999987765432 22 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ .+ +.+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999987 6999999999985 34 56999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 78888875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.01 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=168.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|+++++|++++|+||||||||||||+|+|.++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999998754332 356999999988889999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.++.. ... . ...++++++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~-~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R----------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCS-STT----------C----------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhc-cCC----------c----------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998521 000 0 123567889999988777554 4
Q ss_pred cCChhhhhhHHHHHHHhcCCc-------EeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 292 GISGGQRKRVTTGEMLVGPAL-------ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~-------illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.|||||||||+|||||+.+|+ +++|||||+|||+.++..+.+.|+++.+. +. +|+.++|+..++.+++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~-tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GL-AIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998653 44 4555788888888999999
Q ss_pred EEEcCCeEEEecChhHH
Q 047682 365 ILISEGQIVFQGPREHV 381 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~ 381 (1425)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=348.72 Aligned_cols=209 Identities=22% Similarity=0.351 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||+.|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999998765432 357999999887776 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh--CCcccccccccCc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL--GLDVCADTMVGDE 288 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~ 288 (1425)
||+||+.++..... . .+ + ..++. ....++..++.+ ||+...+..
T Consensus 108 tv~enl~~~~~~~~--~-~~---~------------------~~~~~------~~~~~~~~l~~l~~gl~~~~~~~---- 153 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--T-ME---E------------------ITAVA------MESGAHDFISGFPQGYDTEVGET---- 153 (271)
T ss_dssp BHHHHHHTTCSSCC--C-HH---H------------------HHHHH------HHHTCHHHHHHSTTGGGSBCCGG----
T ss_pred cHHHHHhhhcccCC--h-HH---H------------------HHHHH------HHHhHHHHHHhhhcchhhhhcCC----
Confidence 99999998642110 0 00 0 00000 011234567777 666554443
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.| ||.++|+..++. .||+|++|+
T Consensus 154 -~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t-viivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 154 -GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT-VLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp -GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE-EEEECSCHHHHT-TCSEEEEEE
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE-EEEEeCCHHHHH-hCCEEEEEE
Confidence 45699999999999999999999999999999999999999999999875433445 455677777665 599999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|++++.|+++++.+
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=343.91 Aligned_cols=202 Identities=23% Similarity=0.356 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999998 999999999886533 2467999999987776 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc-------
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT------- 283 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t------- 283 (1425)
||+||+.++... . . + ...++.+++.+|+.+..+.
T Consensus 91 tv~enl~~~~~~-~--~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-D--Y---------------------T---------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-C--S---------------------C---------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-C--C---------------------C---------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999885210 0 0 0 1123456777787765443
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.++ +....|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. .+.|+|+ ++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~-vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLV-IAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEE-ECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEE-EeCChHHH-HhCCE
Confidence 333 3356799999999999999999999999999999999999999999999985 2555555 67776665 56999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|++++.|+++++.+
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=341.08 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEE-EEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAA-YISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++++ |++++|+||||||||||||+|+|.+ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 98 999999998875321246799 99998765 8999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVGDEMLR 291 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~ 291 (1425)
+||+.++.+... .....++.+++.+||+ +..+..+ .
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998643210 0012356788999998 7766554 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC-eEEEEcCC
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD-DIILISEG 370 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D-~vilL~~G 370 (1425)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. + +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998752 2 55557888888899999 99999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=384.78 Aligned_cols=208 Identities=23% Similarity=0.405 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 45899999999999999999999999999999999999998 9999999999876543 4679999998877755
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++... .+.+...+++...+. +.. .-.+++..||.+|+++.
T Consensus 430 tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~------~~~--~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 430 TVKENILLGRPT-------------------------ATDEEVVEAAKMANA------HDF--IMNLPQGYDTEVGERGV 476 (578)
T ss_dssp BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTC------HHH--HHTSTTGGGCBCCGGGT
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc------HHH--HHhCcchhhhhhccCCC
Confidence 999999986321 011111111111100 011 12467778999987654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 477 -~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~-itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLI-VAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp -TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGGGT-TTCSEEEEEETT
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999988743 556555 67776665 569999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=341.77 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=171.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. ...+.+|+|+|++++ ||+++|+|||||||||||++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5678888776310 011569999999999 9999999999999999999999986 4 4899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHH
Q 047682 907 QETFARISG-YCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 907 ~~~~~~~~g-yv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr 984 (1425)
....++.+| |++|++.+ .+||+||+.+...+. ... ++.++++++.++|. +..+.. +..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRK-----LYKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCC-----hhhCCHHHH
Confidence 311255789 99999877 899999999876443 111 24478899999998 877766 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC-EEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD-~v~~l~~Gg~~~y~G~ 1063 (1425)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |||++||+++ ++.+.+| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999986 4667899 9999996 68888887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=341.06 Aligned_cols=211 Identities=26% Similarity=0.377 Sum_probs=170.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. ...+.+|+|||++|++||++||+||||||||||+++|+|... + +|+|.++|.+.
T Consensus 17 ~l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 3889999987731 011469999999999999999999999999999999999865 3 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~~ 975 (1425)
.. ..+++.+||++|++.+++ .||+||+.++.. .... +.+.++++.+++.+.. ++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 599999987421 1121 2356677777775543 2223322
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..||||||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||+++|+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 8999999999873 4 56999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 688888875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=382.26 Aligned_cols=208 Identities=26% Similarity=0.369 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 45899999999999999999999999999999999999998 9999999999877653 467999999887775 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++... .+.+...+++...+ .+..+ -.+++..||.+|+++.
T Consensus 432 tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~------~~~~i--~~l~~g~~~~~~~~~~ 478 (587)
T 3qf4_A 432 TIKENLKWGRED-------------------------ATDDEIVEAAKIAQ------IHDFI--ISLPEGYDSRVERGGR 478 (587)
T ss_dssp EHHHHHTTTCSS-------------------------CCHHHHHHHHHHTT------CHHHH--HTSSSGGGCEECSSSC
T ss_pred cHHHHHhccCCC-------------------------CCHHHHHHHHHHhC------cHHHH--HhcccchhhHhcCCCC
Confidence 999999986321 01111111111000 01111 2466778899987554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+||||||||++|||||+.+|++++||||||+||+.++..+.+.++++. .++|+|+ ++|+...+ ..||+|++|++|
T Consensus 479 -~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 479 -NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFI-ITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp -SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEE-EESCHHHH-TTSSEEEEEETT
T ss_pred -CcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEE-EecChHHH-HhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999873 2555555 66776655 689999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=359.34 Aligned_cols=199 Identities=23% Similarity=0.250 Sum_probs=162.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|++++.... ++.++||+|+..+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 458999999999999999999999999999999999987 6 8999999999887654 378999999988776 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc------
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM------ 284 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~------ 284 (1425)
||+||+.+.... ...+++++++.+||.+..+..
T Consensus 109 tv~enl~~~~~~-----------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH-----------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS-----------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc-----------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999742110 011244567777877654443
Q ss_pred -ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 285 -VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 285 -vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
+++. ...|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+ ++++.++|+. +....+|+
T Consensus 148 ~i~~~-g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 148 VLVDG-GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp EECTT-TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSSS-GGGTTCSE
T ss_pred ccccc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcCH-HHHHhCCE
Confidence 3322 23499999999999999999999999999999999999999999998753 24 4455567775 56677999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|+|+..|+++++.+
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999854
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=336.03 Aligned_cols=200 Identities=23% Similarity=0.352 Sum_probs=160.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||++|++|++++|+||||||||||||+|+|.+++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3589999999999999999999999999999999999874 7999999998765432 367999999987775 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-------CCcccccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL-------GLDVCADT 283 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t 283 (1425)
||+||+.++... .. .+ .+..+++.+ ++++..||
T Consensus 108 tv~enl~~~~~~----~~---------------------~~---------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKLD----AT---------------------DE---------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCTT----CC---------------------HH---------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCCC----CC---------------------HH---------------HHHHHHHHhCCHHHHHhccccccc
Confidence 999999985210 00 00 011222233 35556677
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.++. .+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++.+ ++|+|+ ++|+...+ +.||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tvii-vtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLII-IAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEE-EcCCHHHH-HhCCE
Confidence 6654 4567999999999999999999999999999999999999999999998842 455544 67776665 46999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=328.77 Aligned_cols=188 Identities=19% Similarity=0.275 Sum_probs=155.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999998 999999998875 24578999999998899999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.++....+. . .+ ...++++++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543210 0 00 1235678899999865 544 45699
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.|+|+ ++|+..++..++|+|++ ..|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiii-vtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVII-SSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEE-EESSCCTTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEE-EeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999999999999999999999999999999999998653 455554 67888888888888764 44544
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=377.79 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-ST 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SS
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999876543 46799999987766 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++.... +.+...+++...+ .+..+ -.+++..||.+|+++.
T Consensus 444 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~~--~~~~~g~~t~~~~~g~ 490 (598)
T 3qf4_B 444 TVKENLKYGNPGA-------------------------TDEEIKEAAKLTH------SDHFI--KHLPEGYETVLTDNGE 490 (598)
T ss_dssp BHHHHHHSSSTTC-------------------------CTTHHHHHTTTTT------CHHHH--HTSTTGGGCBCHHHHT
T ss_pred cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------CHHHH--HhccccccchhcCCCC
Confidence 9999999863210 0011111111110 01111 2456677899986554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+|||||||||+|||||+.+|++++||||||+||+.++..+.+.++++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 491 -~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~-itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 491 -DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSII-IAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp -TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEE-ESCCTTHH-HHCSEEEEECSS
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999998742 556555 56666665 559999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=410.16 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|+|||.+||+||+|||||||+++|.|+++|+ +|+|.+||+++++... |+.++||||++.+| +.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF-~g 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DC 1167 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCC-SE
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEee-Cc
Confidence 45999999999999999999999999999999999999998 9999999999998764 57899999977665 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||||||.|+..- ++.+.+++.+++...+- .+. .-.|++..||.||+++.
T Consensus 1168 TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l-----~~~---I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1168 SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANI-----HNF---IAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTC-----HHH---HHTSTTTTCSEETTTSC
T ss_pred cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCC-----hHH---HHcCcCCCCCEecCCCc
Confidence 999999986321 11223334444332221 111 13578899999998766
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+||||||||++|||||+++|+||+||||||+||++|...|.+.|++.. .++|+|+ +.|. ..+...||+|+||++|
T Consensus 1217 -~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~-IAHR-LsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1217 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIV-IAHR-LNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp -SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEE-ECSS-SSTTTTCSEEEEESSS
T ss_pred -ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEE-eccC-HHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999998763 2555555 5554 4567789999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+|+++|+|+++++
T Consensus 1292 ~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=328.42 Aligned_cols=200 Identities=21% Similarity=0.347 Sum_probs=159.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 4788999887631 234699999999999999999999999999999999998653 489999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCc
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS-------LVGLPGVSG 978 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~~ 978 (1425)
.+||++|++.+++. ||+||+.+... .... ..+++++.+++.+..+. .++.+ +..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988885 99999987421 1111 13345555555443222 22222 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++. ++++. +|+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999985 34 56999999997 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8888875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=373.92 Aligned_cols=209 Identities=24% Similarity=0.377 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 35899999999999999999999999999999999999998 9999999999876542 467999999887776 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++.. .. .+.+.+.+++...+ .+..++ .+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~------l~~~~~--~~p~g~~t~~~~~~- 478 (582)
T 3b5x_A 432 TIANNIAYAAE-GE-----------------------YTREQIEQAARQAH------AMEFIE--NMPQGLDTVIGENG- 478 (582)
T ss_pred cHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCC------CHHHHH--hCcccccchhcCCC-
Confidence 99999998631 00 00011111111000 011111 24456789998764
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLV-IAHRLSTI-EQADEILVVDEG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEE-EecCHHHH-HhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998743 556555 56666555 579999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=373.09 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 35899999999999999999999999999999999999998 9999999999876543 467999999887776 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++.. .. .+.+.+.+++...+ .+..++ .+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~------l~~~~~--~~p~g~~~~~~~~~- 478 (582)
T 3b60_A 432 TVANNIAYART-EE-----------------------YSREQIEEAARMAY------AMDFIN--KMDNGLDTIIGENG- 478 (582)
T ss_dssp BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTT------CHHHHH--HSTTGGGSBCCTTS-
T ss_pred CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcC------CHHHHH--hccccccccccCCC-
Confidence 99999998631 00 00111111111100 011112 24556789998764
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRLSTI-EQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGGGT-TTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEE-EeccHHHH-HhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999853 566555 56666554 579999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=355.57 Aligned_cols=210 Identities=20% Similarity=0.285 Sum_probs=175.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|.+.
T Consensus 19 ~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 5899999988731 23569999999999999999999999999999999999764 479999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCC------CCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL------PGV 976 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~------~~~ 976 (1425)
.. ..+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.+..+..... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 43 234578999999999987 69999995321 112 23478899999998877765331 112
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++. .|+|||+++|+++ ....+|+|++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999864 5899999999974 4567999999996 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|++
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 89999986
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=329.20 Aligned_cols=199 Identities=23% Similarity=0.382 Sum_probs=157.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++. +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 788899887731 12469999999999999999999999999999999999865 4689999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCCCCcC
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~~~~~l 979 (1425)
.+||++|++. ++.+||+||+.+.... ..+. .+++++.+++.+.. ++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEPY----YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTTH----HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHHH----HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2799999986 4688999999875321 1111 23334444432211 112222 25689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||+++|+++. + +.+|++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 48999999999873 3 57999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88888875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=327.21 Aligned_cols=196 Identities=24% Similarity=0.338 Sum_probs=150.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 45899999999999999999999999999999999999998 99999998 49999999887775 999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.++.... . ....+ ..+.. ..+..++. ++...+|.+++ ....|
T Consensus 87 enl~~~~~~~----~-~~~~~------------------~~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRS------------------VIKAC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHH------------------HHHHT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHH------------------HHHHh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9999863210 0 00000 00000 00111221 22333455553 35679
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL-RQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .+.| ++.++|+..++ ..||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~t-vi~vtH~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKT-RILVTSKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSE-EEEECCCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCE-EEEEcCChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999863 4442 2445 45467777665 46999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=329.37 Aligned_cols=196 Identities=23% Similarity=0.332 Sum_probs=151.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 45899999999999999999999999999999999999998 99999999 4999999865 5789999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCC-cccccccccCccccc
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGL-DVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~~t~vg~~~~~~ 292 (1425)
||+.++.... ..+ .+...++ ..+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~---------------------~~~~~~~------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---------------------YRSVIQA------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---------------------HHHHHHH------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---------------------HHHHHHH------------HhhHHHHHhcccccccccc-CCCCC
Confidence 9999863210 000 0000000 001223333 222344444 34567
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHH---HHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLR---QIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~---~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+ ++. .+.|+ +.++|+...+ +.||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tv-iivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTR-ILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEE-EEECSCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEE-EEEecChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999884 332 24454 4466776665 57999999999
Q ss_pred CeEEEecChhHHHH
Q 047682 370 GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 G~iv~~G~~~~~~~ 383 (1425)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=369.76 Aligned_cols=212 Identities=21% Similarity=0.313 Sum_probs=173.9
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 46999999998741 234699999999999999999999999999999999998663 58999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 974 (1425)
..+ ..+++.+|||+|++.+++. ||+||+.++. .+.+.+ .+.++++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 654 3456789999999988865 9999997642 122222 2344555555543 234445543
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|+++|+++ ....+|+|++|++
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE 552 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999975 5899999999986 3468999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 553 -G~i~~~g~~ 561 (587)
T 3qf4_A 553 -GKVAGFGTH 561 (587)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 689999986
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=363.50 Aligned_cols=212 Identities=24% Similarity=0.368 Sum_probs=174.8
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46999999998742 234699999999999999999999999999999999998663 58999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
..+ ...++.+|||+|++.+++. ||+||+.++. + +.+. +.+.++++..++.+. .|+.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 653 3456789999999988876 9999998752 1 2222 235566666666543 34444433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. .+.+|++++|++
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~ 550 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN 550 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999885 58999999999974 466999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 551 -G~i~~~g~~ 559 (578)
T 4a82_A 551 -GHIVETGTH 559 (578)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789999986
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=364.21 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=176.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++++++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEh
Confidence 5899999998741 124699999999999999999999999999999999997653 479999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ-------SLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~g~~~ 975 (1425)
.+ ..+++.+|||+|++.+++. ||+||+.++.. + +.+ ++.++++++.+++.+..+ +.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 3456789999999988874 99999987531 1 222 234678888888876543 334433
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 999999999986 3457999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 688898875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=363.51 Aligned_cols=212 Identities=23% Similarity=0.311 Sum_probs=176.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 5899999988741 124699999999999999999999999999999999998663 489999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~~ 975 (1425)
.+ ..+++.+|||+|++.+++. ||+||+.++.. .+.+. +.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC----CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 3456679999999988875 99999987531 12222 3467788888886543 3445543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. .+.+|++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999865 9999999999973 467999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 688898875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=362.64 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=171.9
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++ +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 3699999998874 234699999999999999999999999999999999998763 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ-------SLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~g~~ 974 (1425)
..+ ..+++.+|||+|++.+++ .||+||+.++. + +.+.+ .++++++.+++.+..+ +.+|..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 653 345678999999998885 59999998742 1 22222 2455566666554333 223321
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++. + +.+|+|++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 25799999999999999999999999999999999999999999999986 59999999999973 4 56999999997
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 678999986
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.15 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=147.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.. +.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47778877531 358999999999999999999999999999999999865 4689999988
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCc
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS-------LVGLPGVSG 978 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~~ 978 (1425)
.+||++|++.+++. ||+||+. +. + .... .++++++.+++.+..+. .++. .+..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 37999999988875 9999997 31 1 1111 23445566666543222 2222 1457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4554 4899999999985 34 56999999996 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 8888876
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=321.97 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=146.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999999998 99999998 4999999987776 49999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+. +... .. .... ...+.. ..+..++. ++...++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~------------------~~~~~~---------~l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYR------------------SVIKAC---------QLEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHH------------------HHHHHT---------TCHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHH------------------HHHHHh---------ChHHHHHh--ccccccchhcC-ccCcCC
Confidence 998 4210 00 0000 000000 00112222 22233455543 355799
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL-RQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 373 (1425)
|||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .+.| |+.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~t-viivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKT-RILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSE-EEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCE-EEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4442 2444 55567777665 569999999999999
Q ss_pred EecChhHHH
Q 047682 374 FQGPREHVL 382 (1425)
Q Consensus 374 ~~G~~~~~~ 382 (1425)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=371.66 Aligned_cols=210 Identities=21% Similarity=0.341 Sum_probs=168.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|++|+|||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999987653 46799999987655 67
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++..... .+.+.+.+++...+ .+.. .-.+++..||.||+++.
T Consensus 1122 ti~eNi~~~~~~~~-----------------------~~~~~i~~~~~~~~------~~~~--i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRV-----------------------VSYEEIVRAAKEAN------IHQF--IDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp BHHHHHTCCCSSCC-----------------------CCHHHHHHHHHHHT------CHHH--HSSTTTGGGCBCSTTSC
T ss_pred cHHHHHhccCCCCC-----------------------CCHHHHHHHHHHhC------cHHH--HHhCccccccccCCCCC
Confidence 99999998642110 01111111111100 0111 12467788999997654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.|||||||||+|||||+.+|+||+|||||+|||+.++..|.+.|++.. .++| ++.++|+.+++ ..||+|++|++|
T Consensus 1171 -~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~t-vi~isH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1171 -QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRT-CIVIAHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSC-EEEECSCTTGG-GSCSEEEEEETB
T ss_pred -ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCE-EEEEecCHHHH-HcCCEEEEEECC
Confidence 699999999999999999999999999999999999999999998752 2444 45577887776 559999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++++
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=322.85 Aligned_cols=191 Identities=25% Similarity=0.281 Sum_probs=160.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|+....+.+||+|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD----------LTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe----------eEEEEEecCccCCCCCcHHHH
Confidence 577888889999999999999999999999999999998 9999762 369999998777788999998
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
+....... + .....++.+++.+||.+..+..++ .|||
T Consensus 438 ~~~~~~~~-----~---------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L---------------------------------NSNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----H---------------------------------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----C---------------------------------CHHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86531000 0 001235678899999877776654 5999
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE--GQIV 373 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 373 (1425)
||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..++| ++.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-vi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT-ALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999987654555 55578999999999999999986 8889
Q ss_pred EecChhHHHH
Q 047682 374 FQGPREHVLE 383 (1425)
Q Consensus 374 ~~G~~~~~~~ 383 (1425)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-30 Score=319.22 Aligned_cols=191 Identities=24% Similarity=0.279 Sum_probs=159.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++ ..++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~----------~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD----------LTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC----------ceEEEEecCCcCCCCCcHHHH
Confidence 577778888999999999999999999999999999998 9999752 369999998777788999988
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
+....... + .....++.+++.+||.+..++.++ .|||
T Consensus 368 ~~~~~~~~-----~---------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L---------------------------------NSNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----H---------------------------------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----C---------------------------------CHHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 76431100 0 001235567888999877666554 5999
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE--GQIV 373 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 373 (1425)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..++| |+.++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t-vi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT-ALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE-EEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987544555 45578999999999999999986 8899
Q ss_pred EecChhHHHH
Q 047682 374 FQGPREHVLE 383 (1425)
Q Consensus 374 ~~G~~~~~~~ 383 (1425)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=313.97 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=158.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
.|+++|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|. .++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999998 999998763 68999998766678999999
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
+.+..... . .. ....++.+++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~~-----~---------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKDA-----L---------------ST-----------------SSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSST-----T---------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhhc-----c---------------ch-----------------hHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 98632100 0 00 01124567888999877776554 5999
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE--GQIV 373 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 373 (1425)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g-~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 999999999999999999999999999999999999999999976544 4555579999999999999999986 6677
Q ss_pred EecChhHHH
Q 047682 374 FQGPREHVL 382 (1425)
Q Consensus 374 ~~G~~~~~~ 382 (1425)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=313.56 Aligned_cols=192 Identities=26% Similarity=0.258 Sum_probs=159.5
Q ss_pred eeeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCC
Q 047682 135 TILKDVNGIVKPS-----RLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 135 ~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 209 (1425)
.+++|+|+++++| |+++|+||||||||||+++|+|+++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5799999999999 779999999999999999999999998 7862 1 13469999998766677
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
.||+|++....+ +. + ......+.+++.+||.+..+..++
T Consensus 428 ~tv~e~~~~~~~--~~---~---------------------------------~~~~~~~~~l~~l~l~~~~~~~~~--- 466 (608)
T 3j16_B 428 GTVRQLFFKKIR--GQ---F---------------------------------LNPQFQTDVVKPLRIDDIIDQEVQ--- 466 (608)
T ss_dssp SBHHHHHHHHCS--ST---T---------------------------------TSHHHHHHTHHHHTSTTTSSSBSS---
T ss_pred ccHHHHHHHHhh--cc---c---------------------------------ccHHHHHHHHHHcCChhhhcCChh---
Confidence 899998753211 00 0 001134567899999887776654
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.| |+.++|+..++..++|+|++|++
T Consensus 467 --~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t-viivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 467 --HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT-AFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp --SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE-EEEECSCHHHHHHHCSEEEECEE
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEeC
Confidence 599999999999999999999999999999999999999999999987655555 45579999999999999999986
Q ss_pred --CeEEEecChhHHHH
Q 047682 370 --GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 --G~iv~~G~~~~~~~ 383 (1425)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999998875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-32 Score=339.24 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=115.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhh
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW 938 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~ 938 (1425)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|+.. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 458999999999999999999999999985321 011 13456666541 12222221
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----H
Q 047682 939 LRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1013 (1425)
Q Consensus 939 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~-----~ 1013 (1425)
+.. .+. ++ +...|+..+.+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 221 22 2245665555543 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCcc---------HHHHHhcCEEEEEeCC
Q 047682 1014 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~fD~v~~l~~G 1055 (1425)
+..+.+.++.+++.|.|||+++|++. ..+..++|+|++|++|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999971 2356689999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=317.27 Aligned_cols=193 Identities=19% Similarity=0.268 Sum_probs=156.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+...|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466667777662 3579999999999999999999999999999999994 111 34432
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHH
Q 047682 906 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++|++|+. .+++.+||.|++.+ ... .. ++.++++++.+|+. +..+..+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999874 67789999999975 111 11 34578999999994 5666664 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE-EEC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVG 1062 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~-y~G 1062 (1425)
|||++||++|+.+|+||+|||||+|||+.++..+++.|++ .|+|||+++|++. .+.+.+|++++|++| +++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G-~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGL-KLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETT-EEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECC-eeecCCC
Confidence 9999999999999999999999999999999999999988 5899999999986 577889999999974 554 788
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 76
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-28 Score=315.11 Aligned_cols=205 Identities=22% Similarity=0.288 Sum_probs=133.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHH---------------------hhhcCCCCC--ceE---EEEEEEcCccC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---TGNIKISGYPK 905 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------------------~~l~g~~~~--~~~---~G~i~i~g~~~ 905 (1425)
+.+|+|||++|++||++||+||||||||||+ +++.|...+ +.+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999997 555553322 122 35677777653
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCCHHHHHHHHhhccCCCCCCHHHHHH------HHHHHHHH
Q 047682 906 KQETFARISGYCEQNDI-------------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM------FLEEIMEL 960 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~-------------------~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~------~v~~~l~~ 960 (1425)
... .++.+||++|... .++.+||+||+.+...+..... .....+. ...++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 221 1233455555432 2357899999987533221110 0000000 11235788
Q ss_pred cCCccc-cccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 047682 961 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037 (1425)
Q Consensus 961 l~l~~~-~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1037 (1425)
+||.+. .+.. +..|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|+++.++|.|||+++|+
T Consensus 189 ~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 898764 4555 34799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhcCEEEEEe-----CCcEEEEECCCC
Q 047682 1038 PSIDIFEAFDELFLMK-----RGGYEIYVGPLG 1065 (1425)
Q Consensus 1038 ~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~~ 1065 (1425)
+. ....+|++++|. ++|++++.|++.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 85 456799999993 357889999864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=276.37 Aligned_cols=110 Identities=24% Similarity=0.310 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCC---cEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 267 VTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA---LALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 267 ~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p---~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
.+..+|+.+||... .+| +....|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.+ .|
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 45678999999742 222 334569999999999999999865 79999999999999999999999999875 35
Q ss_pred CEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHHH
Q 047682 344 GTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVLE 383 (1425)
Q Consensus 344 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 383 (1425)
.|+ |.++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 859 ~TV-IvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 859 NTV-IVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CEE-EEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CEE-EEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 554 5578888665 569999999 8999999999999863
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=278.45 Aligned_cols=107 Identities=24% Similarity=0.279 Sum_probs=90.7
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCChhhhhhHHHHHHHhcCC---cEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 268 TDYVIKVLGLDV-CADTMVGDEMLRGISGGQRKRVTTGEMLVGPA---LALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 268 ~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p---~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
...+|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|||||||+|||..+...+++.|+++++ .+
T Consensus 825 ~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 898 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 898 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 456899999976 444444 469999999999999999865 99999999999999999999999999865 34
Q ss_pred CEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHH
Q 047682 344 GTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVL 382 (1425)
Q Consensus 344 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 382 (1425)
.| |+.++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 899 ~T-VIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 899 DT-VLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CE-EEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 44 55578888765 689999999 789999999999885
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=274.68 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCccc-ccccccCcccccCChhhhhhHHHHHHHhcC---CcEeEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 047682 267 VTDYVIKVLGLDVC-ADTMVGDEMLRGISGGQRKRVTTGEMLVGP---ALALFMDEISTGLDSSTTFQIVTSLRQIIHIL 342 (1425)
Q Consensus 267 ~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRvsia~al~~~---p~illLDEptsgLD~~t~~~i~~~L~~~~~~~ 342 (1425)
+++.+|+.+||... .+. .+..|||||||||+||++|+.+ |++|||||||+|||..+...+.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 56788999999763 343 3456999999999999999996 799999999999999999999999999875 3
Q ss_pred CCEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHH
Q 047682 343 NGTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVL 382 (1425)
Q Consensus 343 ~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 382 (1425)
++ +|+.++|+.+++ +.||+|++| ++|++++.|+++++.
T Consensus 783 G~-tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GN-TVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TC-EEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CC-EEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 44 555578888888 889999999 799999999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-26 Score=278.07 Aligned_cols=186 Identities=11% Similarity=0.031 Sum_probs=142.6
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-E-EEECCccCCCCCccceEEEEccCC---CCCCCCCH
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG-R-VTYNGHNMDEFVPQRTAAYISQHD---VHIGEMTV 212 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~d---~~~~~lTV 212 (1425)
.++|+.+++|++++|+||||||||||+|+|+|.+.|+ +| + |.++|. +++.++|++|+. .+...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4799999999999999999999999999999999887 99 9 999982 356799999986 35567899
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+ |+......... .+ .++.+++.+||++..+ ...
T Consensus 200 ~eni-~~~~~~~~~~~---------~~---------------------------~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL---------LH---------------------------NKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBSSCCS---------SC---------------------------CBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-cccccccCcch---------HH---------------------------HHHHHHHHhCCCcccc-------hhh
Confidence 9999 76432100000 00 0112455677776544 346
Q ss_pred CChhhhhhHHHHHH--HhcCCcE----eEEec-CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh-----hHHhh
Q 047682 293 ISGGQRKRVTTGEM--LVGPALA----LFMDE-ISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP-----ETYDL 360 (1425)
Q Consensus 293 LSGGqrqRvsia~a--l~~~p~i----llLDE-ptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~-----~~~~~ 360 (1425)
|||||||||++|++ |+.+|++ +|||| ||+|||.. ...+.+.++ ..+.|+|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 444444443 346676665555441 56689
Q ss_pred cCe-----EEEEc-CCeEEEecChhHHH
Q 047682 361 FDD-----IILIS-EGQIVFQGPREHVL 382 (1425)
Q Consensus 361 ~D~-----vilL~-~G~iv~~G~~~~~~ 382 (1425)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987663
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=254.71 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=139.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-----------------c-------------------eEEE
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----------------G-------------------YITG 896 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~-----------------~-------------------~~~G 896 (1425)
.+++++|+.+.+| +++|+|||||||||||++|.+...+ + ...|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999542210 0 0157
Q ss_pred EEEEcCccCCcc---cc-cceEEEeecCCCCCCCCCHHHHHHHHhhccC-----------------------CCCCC---
Q 047682 897 NIKISGYPKKQE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRL-----------------------PPDVD--- 946 (1425)
Q Consensus 897 ~i~i~g~~~~~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~-----------------------~~~~~--- 946 (1425)
.+.+||.+.+.. .. ...+++++|++.++.. +..+...|--.... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999886542 12 2348999998776543 55554443221100 00000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---ccCC---
Q 047682 947 -------------------------------SETRRMFLEEIMELVELNPLR----------------QS---LVGL--- 973 (1425)
Q Consensus 947 -------------------------------~~~~~~~v~~~l~~l~l~~~~----------------~~---~~g~--- 973 (1425)
.+...+.+++.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344455556554310 00 0110
Q ss_pred ---CCCCc-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 047682 974 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1425)
Q Consensus 974 ---~~~~~-lSgGqrqRl~ia~~L~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD 1047 (1425)
..++. ||||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|+|||+|||+| ++.+.+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 01122 6999999999999999999 9999999999999999999999999997 589999999998 4568899
Q ss_pred EEEEE----eCCcEEEE
Q 047682 1048 ELFLM----KRGGYEIY 1060 (1425)
Q Consensus 1048 ~v~~l----~~Gg~~~y 1060 (1425)
++++| ++ |+++-
T Consensus 364 ~i~~l~k~~~~-G~~~~ 379 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVS 379 (415)
T ss_dssp EEEEEEEEEET-TEEEE
T ss_pred eEEEEEEeccC-CceEE
Confidence 99999 75 45443
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-26 Score=276.01 Aligned_cols=196 Identities=14% Similarity=0.054 Sum_probs=147.5
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-IKISGYPKKQETFARISGYCEQNDI---HSPNVTVY 930 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~lTv~ 930 (1425)
.++|+.+++|++++|+||||||||||+|+|+|... +..| + |.+||. .++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 37999999999999999999999999999999764 3468 8 999983 2456899999874 44568999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHH--HhhCCcE----EEEeC
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1004 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~--L~~~p~i----llLDE 1004 (1425)
||+ |........ .. ++.+.++++.+|+.+..+ ...|||||||||+||++ |+.+|++ |+|||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 10 122456677788876654 24799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc--H---HHHHhcCE-----EEEEeCCcEEEEECCCCCC----ch
Q 047682 1005 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGYEIYVGPLGRH----SS 1069 (1425)
Q Consensus 1005 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~fD~-----v~~l~~Gg~~~y~G~~~~~----~~ 1069 (1425)
||+|||+. ...+.+.++++ |.|+|+++|+.+ . ++.+++|+ |++|++.|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 55566555543 789999999986 2 34578899 99998334556 7875421 12
Q ss_pred hHHHHHhh
Q 047682 1070 HLISYFEA 1077 (1425)
Q Consensus 1070 ~~~~yf~~ 1077 (1425)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 45567754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-23 Score=250.93 Aligned_cols=237 Identities=16% Similarity=0.137 Sum_probs=148.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------------CCcc
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS-----------------------------------LKLS 178 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 178 (1425)
..+++++|+.+.+| +++|+|||||||||||++|.+...+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999997765420 0116
Q ss_pred cEEEECCccCCCCCc----cceEEEEccCCCCCCCCCHHHHHHhhhhhcCC-----CCcchhhhHhhHHhhhcCCCCC--
Q 047682 179 GRVTYNGHNMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQGV-----GSRYDMLVELSRREKDANIKPD-- 247 (1425)
Q Consensus 179 G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~e~~~~~~~~-- 247 (1425)
|++.+||++++.... ...+++++|++.++.. +..+...|--..... ...|....++.+..........
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998764222 1348999998655433 665555543211100 0000000011000000000000
Q ss_pred -C-------ChHHHHHHHh-----------hhhhhhhHHHHHHHHHhCCcccc----------------cc---cccC--
Q 047682 248 -P-------DIDVFMKALA-----------TEGQEASVVTDYVIKVLGLDVCA----------------DT---MVGD-- 287 (1425)
Q Consensus 248 -~-------~~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------~t---~vg~-- 287 (1425)
+ ..+.+.+.+. .........++..++.++++... +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 0111111000 01122334556677777776411 00 1111
Q ss_pred ----ccccc-CChhhhhhHHHHHHHhcCC--cEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 047682 288 ----EMLRG-ISGGQRKRVTTGEMLVGPA--LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360 (1425)
Q Consensus 288 ----~~~~~-LSGGqrqRvsia~al~~~p--~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~ 360 (1425)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++. .++++|+ ++|.. ++.+.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~-itH~~-~~~~~ 361 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLV-VTHLA-QIAAR 361 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSCH-HHHTT
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCcH-HHHhh
Confidence 12222 6999999999999999999 9999999999999999999999999985 2555555 56665 66789
Q ss_pred cCeEEEE----cCCeEEEec
Q 047682 361 FDDIILI----SEGQIVFQG 376 (1425)
Q Consensus 361 ~D~vilL----~~G~iv~~G 376 (1425)
||++++| ++|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=227.18 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=74.3
Q ss_pred CCcCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 976 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..||||||||++||++|+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999985 46789999
Q ss_pred EEEeCCcEEE
Q 047682 1050 FLMKRGGYEI 1059 (1425)
Q Consensus 1050 ~~l~~Gg~~~ 1059 (1425)
++|++ |+++
T Consensus 355 ~~l~~-G~i~ 363 (365)
T 3qf7_A 355 LRITG-GVVV 363 (365)
T ss_dssp EEEET-TEEC
T ss_pred EEEEC-CEEE
Confidence 99997 5654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-24 Score=236.07 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=96.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
++.+|+|| ++||+++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 35688886 89999999999999999999999997 42 1233311000111123456789999976 4
Q ss_pred HHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 047682 931 ESL-LYSA----WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1425)
Q Consensus 931 E~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP 1005 (1425)
||+ .+.. .+.. ... ++.++++++. + + |||||++|||+|+.+|++|+||||
T Consensus 77 enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 444 2211 1110 011 1224455543 2 2 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 047682 1006 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
|+| ++..+++.|+++ ++|+||| +||+++
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 888999999988 6689999 999975
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-21 Score=226.13 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCcCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE--
Q 047682 976 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1049 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v-- 1049 (1425)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|.|||+++|+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 4579999999999999997 6889999999999999999999999999985 5899999999974 67889987
Q ss_pred EEEeCCcEEEEECCCC
Q 047682 1050 FLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1050 ~~l~~Gg~~~y~G~~~ 1065 (1425)
++|.+|...+.....+
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 8888877777766553
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-22 Score=213.17 Aligned_cols=143 Identities=13% Similarity=0.185 Sum_probs=101.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC-CCCCHHHHHHH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS-PNVTVYESLLY 935 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~lTv~E~l~~ 935 (1425)
|||+++++||+++|+||||||||||++++.+... . +++ + ...|+++|+.... ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999774211 1 111 0 1126667764210 0001111111
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH---
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1012 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~--- 1012 (1425)
... +.....+.....+.. ...|+|||||++||++++.+|++|+|||||+|||+.
T Consensus 64 ----------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 122234544444432 236999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCcc
Q 047682 1013 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1013 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
....+++.|+++.++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 668899999888777999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-23 Score=225.12 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=98.5
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC--CCCccceEEEEccCCCC
Q 047682 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD--EFVPQRTAAYISQHDVH 206 (1425)
Q Consensus 129 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~~~~~~yv~Q~d~~ 206 (1425)
+..+++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|.. .+.. ....++.++|++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~-- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL-- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC----
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH--
Confidence 334456789996 89999999999999999999999999 887 788732 1111 112346799999964
Q ss_pred CCCCCHHHHH-HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 207 IGEMTVRETL-AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 207 ~~~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+||+ .+..... + .+. . .. + ...++.+++. |
T Consensus 76 ------~enl~~~~~~~~------~---~~~---~----~~--~---------------~~~~~~~l~~-g--------- 106 (208)
T 3b85_A 76 ------NEKIDPYLRPLH------D---ALR---D----MV--E---------------PEVIPKLMEA-G--------- 106 (208)
T ss_dssp ----------CTTTHHHH------H---HHT---T----TS--C---------------TTHHHHHHHT-T---------
T ss_pred ------HHHHHHHHHHHH------H---HHH---H----hc--c---------------HHHHHHHHHh-C---------
Confidence 6666 4421100 0 000 0 00 0 0123334432 2
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ + . +++|+ ++|+..++ +++.
T Consensus 107 -------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~----~~~~ 165 (208)
T 3b85_A 107 -------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV----DLPG 165 (208)
T ss_dssp -------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC------------
T ss_pred -------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH----hCcC
Confidence 2 999999999999999999999999999 888888888876 3 2 45556 67776544 4443
Q ss_pred EEcCC
Q 047682 366 LISEG 370 (1425)
Q Consensus 366 lL~~G 370 (1425)
..++|
T Consensus 166 ~~~~G 170 (208)
T 3b85_A 166 GQKSG 170 (208)
T ss_dssp ----C
T ss_pred CCCCc
Confidence 34455
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=221.26 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=72.2
Q ss_pred cccccCChhhhhhHHHHHHHh------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhc
Q 047682 288 EMLRGISGGQRKRVTTGEMLV------GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~------~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~ 361 (1425)
+.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+ .+.|+|+ ++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~-itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVF-ITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEE-EESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEE-EecchHH-HHhC
Confidence 456679999999999999999 79999999999999999999999999999854 3555544 6777765 7889
Q ss_pred CeEEEEcCCeEEE
Q 047682 362 DDIILISEGQIVF 374 (1425)
Q Consensus 362 D~vilL~~G~iv~ 374 (1425)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999974
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-23 Score=235.97 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=117.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999998 5887 356788765554 5888
Q ss_pred H-HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 214 E-TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
| |+.+.... .. .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 6 77663110 00 011233333 444444 2 36
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||| |||++.+|+||| ||+||+.++..|.. + +|..+..+.+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l-------------tH~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L-------------HSRVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G-------------TTTEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H-------------hCCHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999877752 1 3334556789999 9999999
Q ss_pred EEecChhHHHHHHHhC
Q 047682 373 VFQGPREHVLEFFKSM 388 (1425)
Q Consensus 373 v~~G~~~~~~~~F~~~ 388 (1425)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999996666543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-22 Score=239.67 Aligned_cols=172 Identities=11% Similarity=0.085 Sum_probs=132.6
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc
Q 047682 134 FTILKDVNGIVKPSR--------------------LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 193 (1425)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 458999999999999 99999999999999999999999998 999999997653
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH
Q 047682 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIK 273 (1425)
Q Consensus 194 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 273 (1425)
+ .+|++|++ .++.+|+.||+.++.. +..++..++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899974 5778899888755310 001355777
Q ss_pred HhCCcccccccccCcccccCChh--hhhhHHHHHHHhc----------CCcEeEEecCCCCCChHHHHHHHHHHHHHHH-
Q 047682 274 VLGLDVCADTMVGDEMLRGISGG--QRKRVTTGEMLVG----------PALALFMDEISTGLDSSTTFQIVTSLRQIIH- 340 (1425)
Q Consensus 274 ~lgL~~~~~t~vg~~~~~~LSGG--qrqRvsia~al~~----------~p~illLDEptsgLD~~t~~~i~~~L~~~~~- 340 (1425)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88886542 21 22 9999 9999999999999 9999999999999999999999999998852
Q ss_pred ---hcC---CEEEEEEecChhh--HHhhcCeEE
Q 047682 341 ---ILN---GTAVISLLQPAPE--TYDLFDDII 365 (1425)
Q Consensus 341 ---~~~---~t~ii~~~q~~~~--~~~~~D~vi 365 (1425)
..+ .++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 221 3445444555554 667777663
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=218.35 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=69.2
Q ss_pred ccccCChhhhhhHHHHHHHh----cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 289 MLRGISGGQRKRVTTGEMLV----GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~----~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.+..||||||||++||++|+ .+|++++|||||++||+.....+.+.++++. .+.++|+ ++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~-~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIV-ITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEE-ECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEE-EECC-HHHHhhCceE
Confidence 34579999999999999997 6899999999999999999999999999873 2445444 5666 5788999987
Q ss_pred --EEEcCCeE-EEecChhH
Q 047682 365 --ILISEGQI-VFQGPREH 380 (1425)
Q Consensus 365 --ilL~~G~i-v~~G~~~~ 380 (1425)
++|.+|+. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888855 34444443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-23 Score=243.86 Aligned_cols=170 Identities=15% Similarity=0.170 Sum_probs=132.7
Q ss_pred eeeeeceeEEEeCCe--------------------EEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCccccc
Q 047682 852 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFA 911 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge--------------------~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~ 911 (1425)
+.+|++||+++++|+ ++||+||||||||||+|+|+|...+ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 458999999999999 9999999999999999999997653 3577888876532
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH--HHHHHHH
Q 047682 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 989 (1425)
Q Consensus 912 ~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG--qrqRl~i 989 (1425)
+ .+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+..... .+|+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889988875431 0 12367889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCccH-HHHHhcCEE
Q 047682 990 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDEL 1049 (1425)
Q Consensus 990 a~~L~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~fD~v 1049 (1425)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++-+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 32 2678899998752 255556655
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-23 Score=227.82 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=119.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..+++| .++++||+++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457778 6899999999999999999999999999653 223333333332211 22456899999988788888877
Q ss_pred HHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEE
Q 047682 932 SLLYSAWLRL---PPDVDSETRRMFLEEI------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002 (1425)
Q Consensus 932 ~l~~~~~lr~---~~~~~~~~~~~~v~~~------l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illL 1002 (1425)
++........ ....+.++.++.+++. ++.+|+.+.++... ..|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 7642211110 0012333444445554 44555554444432 3466 88999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 1003 DEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1003 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++.+.+|++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 9999998 78899999999999974 4899999999987 6888999999997654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-20 Score=199.87 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=99.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~ 943 (1425)
.++|+||||||||||+++|+|... +.++|.+... ...++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 589999999999999999999653 2223322111 12345689999975 222332 1 11100
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHH
Q 047682 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1016 (1425)
Q Consensus 944 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~-----L~~~p~illLDE--PTsgLD~~~~~~ 1016 (1425)
.. .+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --TS----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --CC----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --Cc----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 0122222 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 1017 VMRTVRNTVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 1017 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9988875 4777888886 543 46667787 3456555443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-20 Score=197.59 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=54.9
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChH----------------HHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSS----------------TTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~----------------t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. |.|+| .++|+..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi-~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYV-YILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEE-EEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEE-EEeCCHH
Confidence 36999999999999999999999999999999999 558888888888654 55544 4677776
Q ss_pred hHHh
Q 047682 356 ETYD 359 (1425)
Q Consensus 356 ~~~~ 359 (1425)
++.+
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-20 Score=200.11 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCc
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 228 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 228 (1425)
.++|+||||||||||+++|+|.+.. .+.|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 5799999999999999999999852 2233221 1111102246789999964 222222 10 00
Q ss_pred chhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHH--
Q 047682 229 YDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM-- 306 (1425)
Q Consensus 229 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~a-- 306 (1425)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0112 12344699999999999996
Q ss_pred ---HhcCCcEeEEec--CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEe--cChhhHHhhcCeEEEEcCCeEEE
Q 047682 307 ---LVGPALALFMDE--ISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL--QPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 307 ---l~~~p~illLDE--ptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~--q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
++.+|++++||| ||++||+.....+.+.+++ .+.|+++++| |+.+.+..++|+ .+|++++
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999998888887765 3556777775 677888888998 5566665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-19 Score=209.93 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=127.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------c--cceEEEEccCCC-C
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------P--QRTAAYISQHDV-H 206 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 206 (1425)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999887 899999998765421 1 246999999987 8
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~----~d--------------------------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-T----CS--------------------------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-C----Cc--------------------------------------chHHhcCCCCcchhHHH-
Confidence 8899999999885321 1 00 00223456655444443
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCc--EeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hh
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPAL--ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP---------AP 355 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~--illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~---------~~ 355 (1425)
..|| |||++||++++.+|+ +|+|| ||+|||+... ++++.+..+.|.++ ++|. ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 4599 999999999999999 99999 9999998754 24444344556555 4552 12
Q ss_pred hHHhhcCeEEEEcCCeE
Q 047682 356 ETYDLFDDIILISEGQI 372 (1425)
Q Consensus 356 ~~~~~~D~vilL~~G~i 372 (1425)
......+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33345667888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-20 Score=208.46 Aligned_cols=144 Identities=12% Similarity=0.148 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCc
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 228 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 228 (1425)
.++|+||||||||||+|+|+|...|+ +|+|.++|+++.....++.++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--
Confidence 47999999999999999999999998 9999999998765545578999999999999999999999875322100
Q ss_pred chhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHh
Q 047682 229 YDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308 (1425)
Q Consensus 229 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~ 308 (1425)
..+.+.+ .++ ....+... ..||||||||+++||+++
T Consensus 79 --------------------~~~~i~~---------------~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 79 --------------------CWEPIEK---------------YIN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp --------------------CSHHHHH---------------HHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred --------------------HHHHHHH---------------HHH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 0000000 000 11112222 359999999999999987
Q ss_pred cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEE
Q 047682 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~ 350 (1425)
. +++||||+.|||+.. .+.++.+.+. .++|+++
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi 147 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVI 147 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEE
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEE
Confidence 5 999999999999987 4445555432 5555544
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=198.51 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=74.4
Q ss_pred Ccccc-cCChhhhhhHHHHHHHh---------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 287 DEMLR-GISGGQRKRVTTGEMLV---------GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 287 ~~~~~-~LSGGqrqRvsia~al~---------~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 69999999999999999 899999999999999999999999988764 2 566666674 33
Q ss_pred HHhhcCeEEEEcCCeEEEecChhHH
Q 047682 357 TYDLFDDIILISEGQIVFQGPREHV 381 (1425)
Q Consensus 357 ~~~~~D~vilL~~G~iv~~G~~~~~ 381 (1425)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-20 Score=211.05 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVD 946 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~ 946 (1425)
.+||+||||||||||+|+|+|... +.+|+|.++|.+......++.+||++|++.+++.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999654 3479999999877555556789999999999999999999988654321 111
Q ss_pred HHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 047682 947 SETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026 (1425)
Q Consensus 947 ~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1026 (1425)
.+ .+.+.++ .+..+.. ...||||||||+.|||+++. ++||||||+|||+.. .+.++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1233332 2333333 24699999999999999875 999999999999987 445556655
Q ss_pred CCCEEEEEecCc
Q 047682 1027 TGRTVVCTIHQP 1038 (1425)
Q Consensus 1027 ~g~tvi~~~H~~ 1038 (1425)
. .+||+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-19 Score=208.80 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=117.7
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TF--ARISGYCEQNDI-HS 924 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~ 924 (1425)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3578899999999999999999999999999996432 258899999775321 12 235899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEE
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1002 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illL 1002 (1425)
|.+|++|++.++.. + ..+ ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 99999999987542 1 111 13456677776665553 4689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 047682 1003 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1037 (1425)
Q Consensus 1003 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1037 (1425)
| ||+|||+.+.. +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999987542 4444 348999999994
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-21 Score=211.25 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=106.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 210 (1425)
.-|+|||+++++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4699999999999999999999999999999999987 4 78888 776543222 35689999976554433
Q ss_pred CH-HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 211 TV-RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 211 TV-~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+. .+++.+. ... ...|... ...++++++...+ ..+.
T Consensus 84 ~~~~~~l~~~-~~~--~~~~g~~--------------------------------~~~i~~~l~~~~~-----~il~--- 120 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA--NNFYGTL--------------------------------KSEYDKAKEQNKI-----CLFE--- 120 (218)
T ss_dssp HHTTCEEEEE-EET--TEEEEEE--------------------------------HHHHHHHHHTTCE-----EEEE---
T ss_pred hhccchhhhh-hcc--cccCCCc--------------------------------HHHHHHHHhCCCc-----EEEE---
Confidence 21 1111110 000 0000000 0112333333221 1221
Q ss_pred cccCChhhhhhHHH-----HHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 290 LRGISGGQRKRVTT-----GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 290 ~~~LSGGqrqRvsi-----a~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+.... .+ +.| ...||.|
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~i 188 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNLS 188 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSEE
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCEE
Confidence 3599999999999 89999999999999999999999999999998876543 22 122 2457777
Q ss_pred EEEcC
Q 047682 365 ILISE 369 (1425)
Q Consensus 365 ilL~~ 369 (1425)
+++++
T Consensus 189 iv~~~ 193 (218)
T 1z6g_A 189 IINDD 193 (218)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 76654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-21 Score=221.93 Aligned_cols=169 Identities=12% Similarity=0.132 Sum_probs=122.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ..+|+|+|+.|++|++++|+||||||||||+++|+|.. +|+|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 56677776552 24899999999999999999999999999999999975 3455
Q ss_pred cccccceEEEeecCCCCCCCCCHHH-HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYE-SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E-~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
++|++|++.++. .|++| |+.|.. +.+. .+.+.++.+ |.+..| ...|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 346777776665 36776 665421 1111 234455553 333223 2469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
| ||+|+++|+||+ ||+||+.++..++. .+|+++ ..+.+|+| +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999988762 189886 45789999 9986 688888876
Q ss_pred CCchhHHHHHhhC
Q 047682 1066 RHSSHLISYFEAI 1078 (1425)
Q Consensus 1066 ~~~~~~~~yf~~~ 1078 (1425)
.++..+|..+
T Consensus 262 ---~el~~~y~~l 271 (305)
T 2v9p_A 262 ---ADWKSFFVRL 271 (305)
T ss_dssp ---HHHHHHHHHS
T ss_pred ---HHHHHHHHHH
Confidence 3455666654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=191.94 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCcCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 976 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 976 ~~~lSgGqrq------Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..||||||| |+++|++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||+++|++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4679999999 67778888889999999999999999999999999999887789999999996 467899999
Q ss_pred EEEe
Q 047682 1050 FLMK 1053 (1425)
Q Consensus 1050 ~~l~ 1053 (1425)
+.|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-19 Score=205.77 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=127.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---------ccceEEEEccCCC-CC
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---------PQRTAAYISQHDV-HI 207 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 207 (1425)
+++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.+..... .++.++|++|++. ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999887 899999998865421 1246999999887 88
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+|++.++... + ++. .+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~----~d~--------------------------------------~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YDV--------------------------------------VLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CSE--------------------------------------EEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-C----CHH--------------------------------------HHHHhcCCChhhhhHH--
Confidence 899999999986321 0 000 0223355655444333
Q ss_pred cccccCChhhhhhHHHHHHHhcCCc--EeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hhh
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPAL--ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP---------APE 356 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~--illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~---------~~~ 356 (1425)
..|| |||++||++++.+|+ +|+|| ||+|||+.+.. +++.+..+.|.|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 4599 999999999999999 99999 99999987642 3444344556655 4552 223
Q ss_pred HHhhcCeEEEEcCCeE
Q 047682 357 TYDLFDDIILISEGQI 372 (1425)
Q Consensus 357 ~~~~~D~vilL~~G~i 372 (1425)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3345677888888864
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-20 Score=206.64 Aligned_cols=184 Identities=12% Similarity=0.077 Sum_probs=111.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.++++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 68999999999999999999999999999852 23332233322211 1235689999987777788887
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHH------HHHhCCcccccccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYV------IKVLGLDVCADTMVGD 287 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~~t~vg~ 287 (1425)
|++.+.....+....|.. .+. +...++++. ++.+|+...++...
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~------------------------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQ------------------------PVRAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHH------------------------HHHHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCC----cHH------------------------HHHHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 776432211100000000 000 001111111 22333333333322
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCC----ChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGL----DSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgL----D~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
+.|| +|+.+|++++|||||+|+ |+..+.++.+.++++.+..+.|+ +.++|+.+++.++||+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tv-i~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDK-VVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSE-EEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcE-EEECCCHHHHHHHHHH
Confidence 3466 899999999999999998 67789999999999875444454 4578999999999999
Q ss_pred EEEEc
Q 047682 364 IILIS 368 (1425)
Q Consensus 364 vilL~ 368 (1425)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-21 Score=215.66 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=108.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCCCCCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----ETFARISGYCEQNDIHSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~lT 928 (1425)
.-|+|||+++++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 46899999999999999999999999999999999652 56666 554321 123456799999876554433
Q ss_pred HH-HHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHH-----HHHHhhCCcEEE
Q 047682 929 VY-ESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIF 1001 (1425)
Q Consensus 929 v~-E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~i-----a~~L~~~p~ill 1001 (1425)
.. +++. ...++.+ ...+ ++.++++++...+. ..+ ..+|||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~-~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLE-YDNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEE-EEEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhh-hhhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 11 1111 0011110 0111 12356666654322 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCccHHHHHhcCEE
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
|||||+++|..+...+.+.+++..+ .+.+.|+++|++. +.++..|++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 9999999999999999988877643 2345555555543 344444444
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-19 Score=205.78 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=103.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997653 36899998864211 01122233321
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1013 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356677776543458999999987 567899999998763
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-19 Score=218.05 Aligned_cols=180 Identities=15% Similarity=0.101 Sum_probs=139.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCc---cCCCC--------CccceEEEEc
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH---NMDEF--------VPQRTAAYIS 201 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~--------~~~~~~~yv~ 201 (1425)
...+|+++ +.+.+|+.++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35699999 999999999999999999999999999999998 999999998 45432 1346799999
Q ss_pred cC-CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc
Q 047682 202 QH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC 280 (1425)
Q Consensus 202 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 280 (1425)
|+ +..++.+||.+|+.+.++.... +. .+. ...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~v---------------------------~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QHV---------------------------LLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CEE---------------------------EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CCH---------------------------HHH
Confidence 95 5667788999999886543110 00 000 000
Q ss_pred ccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHh--cCCE-----EEEEEecC
Q 047682 281 ADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI--LNGT-----AVISLLQP 353 (1425)
Q Consensus 281 ~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~--~~~t-----~ii~~~q~ 353 (1425)
.| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+. .++. +|+..+|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 01 123599999 999999 888887 9999999999999999887541 1242 55556677
Q ss_pred hhhHHhhcCeEEEEcCCeEEEecChhHH
Q 047682 354 APETYDLFDDIILISEGQIVFQGPREHV 381 (1425)
Q Consensus 354 ~~~~~~~~D~vilL~~G~iv~~G~~~~~ 381 (1425)
.. ...+|++++|.+|+++..|+++++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 65 678999999999999999988765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-19 Score=206.09 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=118.6
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TF--ARISGYCEQNDI-HSP 925 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 925 (1425)
+++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 457888999999999999999999999999996432 258899999875321 12 245899999988 889
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 047682 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1003 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illLD 1003 (1425)
..|++|++.++.. + ..+ ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~---~~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T---TCS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C---CCH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 9999999987642 1 111 13456677776655543 4689 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1037 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1037 (1425)
||+|||+.+.. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 48999999994
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-17 Score=191.14 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=72.1
Q ss_pred CC-cCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh
Q 047682 976 VS-GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1045 (1425)
Q Consensus 976 ~~-~lSgGqrqRl~ia~~L~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 1045 (1425)
++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + + .
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~ 333 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---G 333 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---T
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---c
Confidence 34 69999999999999999 8999999999999999999999999998863 799999994 3 2 7
Q ss_pred cCEEEEEeCCcEEEEECCCC
Q 047682 1046 FDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1046 fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
+|++++|++ |+++..|++.
T Consensus 334 ~~~i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 334 AALTLRAQA-GRFTPVADEE 352 (359)
T ss_dssp CSEEEEEET-TEEEECCCTT
T ss_pred CCEEEEEEC-CEEEecCCHH
Confidence 899999996 6888888864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-18 Score=198.16 Aligned_cols=128 Identities=10% Similarity=-0.004 Sum_probs=96.5
Q ss_pred ceEE-EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 047682 139 DVNG-IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 139 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|+|. .+++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999999875 442 368999999888888 9999986
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
+... .+... ..........++.++ ....+..+ ..+||||
T Consensus 143 ~~~~-~g~~~----------------------------------~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPE----------------------------------SYNRRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGG----------------------------------GBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCCh----------------------------------HHHHHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 5211 11100 000123445677776 43333443 4599999
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCCCCh
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTGLDS 325 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsgLD~ 325 (1425)
|||+++|++++.+|+|+|||||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999996
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-18 Score=198.17 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=100.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 799999999999999999999999999999999999998 9999999853 110 000
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
.+ .. . ..+ .+ |
T Consensus 215 ----~~-----~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-----NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp ----CS-----SE----------------------------------------------E-------EEE-----CB--T
T ss_pred ----ch-----hE----------------------------------------------E-------EEE-----eC--C
Confidence 00 00 0 000 01 8
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCC-EEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNG-TAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~-t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||+||++||+||..+|++++|||||+. ++.+.|+.+. .++ |++++ +|... +.+.+||+++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t-~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTT-LHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEE-EECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEE-EcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456676664 244 45554 44443 8889999999988853
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-18 Score=194.39 Aligned_cols=183 Identities=15% Similarity=0.151 Sum_probs=114.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
.+|+++++.+++|++++|+||||||||||++.|+|..... .| .|.+.+.+.......+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4799999999999999999999999999999999953211 23 44333322222222222222222221 12223
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC---
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1007 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq-rqRl~ia~~L~~~p~illLDEPTs--- 1007 (1425)
++.... .+.++.++.++++++..++. +.+. ...+|.+| +||+. |+++..+|++|++||||+
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333211 11122233344444322221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCcc-H--------------------HHHHhcCEEEEEeCCc
Q 047682 1008 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1008 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~fD~v~~l~~Gg 1056 (1425)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|+|++|.+|.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 5 555 6678899999999765 999999999962 1 4667899999999753
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-16 Score=181.59 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=67.2
Q ss_pred cccccCChhhhh------hHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhc
Q 047682 288 EMLRGISGGQRK------RVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361 (1425)
Q Consensus 288 ~~~~~LSGGqrq------Rvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~ 361 (1425)
..+..||||||| |+++|++++.+|++|+|||||+|||+..+..+.+.|+++... +.++++ ++|+ +++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~-~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVIL-VSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEE-EESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE-EECh-HHHHHhC
Confidence 345679999999 677888999999999999999999999999999999987543 455555 5666 5788999
Q ss_pred CeEEEEc--CCe
Q 047682 362 DDIILIS--EGQ 371 (1425)
Q Consensus 362 D~vilL~--~G~ 371 (1425)
|++++|+ +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 454
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-19 Score=211.97 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=135.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY---PKKQ--------ETFARISGYCEQN 920 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~Q~ 920 (1425)
..+|+++ +.+.+||+++|+|||||||||||++|+|.... ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4689999 99999999999999999999999999997653 3799999997 3321 2346779999995
Q ss_pred -CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 047682 921 -DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 999 (1425)
Q Consensus 921 -~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~i 999 (1425)
+..++.+|+.+++.+.+....... .++ ....|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v------~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------QHV------LLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------CEE------EEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------CCH------HHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 555678899999987653210000 000 011122 34699999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1000 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1000 llLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+|||+.+...+.+.++++.+ . |. ||++++||.+ ...+|++++|.+ |+++..|+.
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999998865 3 64 9999999987 357899999986 788887754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=194.91 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=66.6
Q ss_pred ccccC-ChhhhhhHHHHHHHhcCC--cEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 289 MLRGI-SGGQRKRVTTGEMLVGPA--LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 289 ~~~~L-SGGqrqRvsia~al~~~p--~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
.+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ +.++|+ ++|.. ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~-itH~~-~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLV-VTHLA-QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEE-ECCCH-HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCH-HHHHhCCEEE
Confidence 34567 999999999999999999 99999999999999999999999999875 455544 66665 4667899999
Q ss_pred EEcCC
Q 047682 366 LISEG 370 (1425)
Q Consensus 366 lL~~G 370 (1425)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-17 Score=188.89 Aligned_cols=185 Identities=13% Similarity=0.051 Sum_probs=111.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG-RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
.++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.+.+.+.......+++.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998775 56 55443322110000011111111100 011
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
.+++..+ .....+....++.+++..++. +.+ ....
T Consensus 95 ~~~l~~~--------------------------------------~~~~~~~~~~~~~~l~~~~l~------i~~-~~~~ 129 (296)
T 1cr0_A 95 SDSLKRE--------------------------------------IIENGKFDQWFDELFGNDTFH------LYD-SFAE 129 (296)
T ss_dssp CHHHHHH--------------------------------------HHHHTHHHHHHHHHHSSSCEE------EEC-CCCS
T ss_pred ccccccC--------------------------------------CCCHHHHHHHHHHHhccCCEE------EEC-CCCC
Confidence 1111110 000011122233333322221 111 1134
Q ss_pred CChhh-hhhHHHHHHHhcCCcEeEEecCCC---C---CCh-HHHHHHHHHHHHHHHhcCCEEEEEEecCh--h-------
Q 047682 293 ISGGQ-RKRVTTGEMLVGPALALFMDEIST---G---LDS-STTFQIVTSLRQIIHILNGTAVISLLQPA--P------- 355 (1425)
Q Consensus 293 LSGGq-rqRvsia~al~~~p~illLDEpts---g---LD~-~t~~~i~~~L~~~~~~~~~t~ii~~~q~~--~------- 355 (1425)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.++|+ ++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCcccccccccc
Confidence 88888 66776 999999999999999999 5 455 66688999999998776666666 45553 3
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 047682 356 -------------ETYDLFDDIILISEGQI 372 (1425)
Q Consensus 356 -------------~~~~~~D~vilL~~G~i 372 (1425)
.+.+.||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-16 Score=158.91 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCcCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 976 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia------~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+.|+|||+++|++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 047682 1050 FLMK 1053 (1425)
Q Consensus 1050 ~~l~ 1053 (1425)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-16 Score=180.20 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=102.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999975 222233 1346799999974 777899
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
+.|++.+.......... + ..+. ......++.+ .+..+..+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~----------~-------~~~~---------------~~~~~~L~~l--~~~~~~~~-----~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----------D-------AFDN---------------DLMHRTLKNI--VEGKTVEV-----P 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----------G-------GBCH---------------HHHHHHHHHH--HTTCCEEE-----C
T ss_pred HhHhhhhhccCCCCCCc----------c-------cccH---------------HHHHHHHHHH--HCCCCeec-----c
Confidence 99998775332111000 0 0000 0112223322 23333333 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHh-hcCeEEEEcCC
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD-LFDDIILISEG 370 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~-~~D~vilL~~G 370 (1425)
.+|+||+||+.+ ++++.+|++++||||....|.. +.++ .+ .+|+..+|+...+.+ +++++ ++|
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~-~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FH-LRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CS-EEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cC-eEEEEECCHHHHHHHHHHHHH---HcC
Confidence 699999999988 5888999999999988877753 1222 23 444444554444433 34444 556
Q ss_pred eEEEecChhHHHHHH
Q 047682 371 QIVFQGPREHVLEFF 385 (1425)
Q Consensus 371 ~iv~~G~~~~~~~~F 385 (1425)
+ +.+++.+.+
T Consensus 180 ~-----~~e~~~~~~ 189 (245)
T 2jeo_A 180 R-----DLEQILTQY 189 (245)
T ss_dssp ------CHHHHHHHH
T ss_pred C-----CHHHHHHHH
Confidence 4 566665433
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-18 Score=194.69 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=108.5
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 941 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~ 941 (1425)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 8999999999999999999999999964321 121 347999999999888 99999854211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 047682 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021 (1425)
Q Consensus 942 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l 1021 (1425)
.+.......+.+.++++.++ .+..+.. +..|||||+||+++|++++.+|+||+||||++.+|+.. ..+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 11222222344677788777 4443333 34699999999999999999999999999999998621 112
Q ss_pred HHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 1022 ~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+++. + .+|++.|+.+.......+|.+.+.+
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 2222 2 3455566554333334455554543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-17 Score=185.85 Aligned_cols=156 Identities=9% Similarity=-0.005 Sum_probs=98.3
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
+++.+|+|+|+++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3457999999999999999999999999999999999853 112222 2356689999986 6678999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
.|++.+........+ ......+.+.+.++.+ .+..+.. ...+|+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876543211111 1111112233444433 2333333 34699999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 047682 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1038 (1425)
|.. ++++ .+.||++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 763 2222 378999999974
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-16 Score=209.72 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=112.7
Q ss_pred eeeeeceeEEEeC-------CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~-------Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~ 924 (1425)
..+++|+++.+++ |++++|+|||||||||||+++ |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4699999999987 999999999999999999999 85420 1122239999753
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDE 1004 (1425)
.+||.|++. .+. |+.+.... +.+.+|+|+++ +++|++++++|++++|||
T Consensus 828 -~l~v~d~I~----~ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVF----TRL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEE----EEC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHH----HHc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 456655542 011 11111110 12357777665 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE--EECC
Q 047682 1005 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI--YVGP 1063 (1425)
Q Consensus 1005 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~--y~G~ 1063 (1425)
||+|+|+.. ...++.+|+.+.+. |+++|++||+++ .+...+|++.++. |++. +.|+
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecC
Confidence 999999987 46678899999876 999999999986 3556789988874 5666 4454
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=197.19 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=106.7
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc--------CCCCCceEEEEEEEcCccCCcccccceEEEeecCCC
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNIKISGYPKKQETFARISGYCEQNDI 922 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~ 922 (1425)
...+++|+|+.+.+|++++|+|||||||||||++++ |..-+ ..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHH---HH
Confidence 346899999999999999999999999999999994 32111 0110 01110 00
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHH--hhCCcEE
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 1000 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L--~~~p~il 1000 (1425)
. +..+|+. |.. .+++|++++++..+|++| +.+|+++
T Consensus 708 i----------------------------------~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 I----------------------------------LARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp E----------------------------------EEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred H----------------------------------HHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 0 0111111 111 235888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1001 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1001 lLDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+|||||+|+|+.....+ +.+++.+.+ .|+|+|++||++ ++.+++|++..+++ |++.+.+..
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 99999999999988877 667777876 499999999996 46789999999987 687777664
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=196.55 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=70.4
Q ss_pred ccCChhhhhhHHHHHHH--hcCCcEeEEecCCCCCChHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 291 RGISGGQRKRVTTGEML--VGPALALFMDEISTGLDSSTTFQI-VTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al--~~~p~illLDEptsgLD~~t~~~i-~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+.+..+.++++ ++|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~-aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF-ATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE-EESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE-EcCc-HHHHHHhccccee
Confidence 46888888888888888 999999999999999999998888 55666665434555555 5666 5677899999999
Q ss_pred cCCeEEEecChhHH
Q 047682 368 SEGQIVFQGPREHV 381 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~ 381 (1425)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-16 Score=176.34 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=96.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceE-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.+.. |++|+...+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3788999 89999999999999999999999999643 22 588988886532 233321100
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
.. . +.+++.. ..+ |++||++|..+|++|++|||| |+
T Consensus 75 -------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0122211 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 1012 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
.+...+ ++. ++.|.+|++|+|+++ ..+.+|+++.|..
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 886544 443 356999999999986 5678899988864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-15 Score=185.24 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=111.5
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhh
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSA 220 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 220 (1425)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5689999999999999999999999999987653 42 12455666531 02222211
Q ss_pred hhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhh
Q 047682 221 RCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300 (1425)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 300 (1425)
++ + .+. +. +...|+....+. .+..|||||+||
T Consensus 330 ~~-g-----------------------~~~------------------~~-~~~~g~~~~~~~-----~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 SW-G-----------------------MDF------------------EE-MERQNLLKIVCA-----YPESAGLEDHLQ 361 (525)
T ss_dssp TT-S-----------------------CCH------------------HH-HHHTTSEEECCC-----CGGGSCHHHHHH
T ss_pred Hc-C-----------------------CCH------------------HH-HHhCCCEEEEEe-----ccccCCHHHHHH
Confidence 00 0 000 01 123455444443 345699999999
Q ss_pred HHHHHHHhcCCcEeEEecCCCCCChH-----HHHHHHHHHHHHHHhcCCEEEEEEecCh----------hhHHhhcCeEE
Q 047682 301 VTTGEMLVGPALALFMDEISTGLDSS-----TTFQIVTSLRQIIHILNGTAVISLLQPA----------PETYDLFDDII 365 (1425)
Q Consensus 301 vsia~al~~~p~illLDEptsgLD~~-----t~~~i~~~L~~~~~~~~~t~ii~~~q~~----------~~~~~~~D~vi 365 (1425)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.+ .+.|++++ +|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilv-sh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFT-NTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEE-EECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEE-ECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 89999998888754 45566664 5554 66778999999
Q ss_pred EEcCCe
Q 047682 366 LISEGQ 371 (1425)
Q Consensus 366 lL~~G~ 371 (1425)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-16 Score=183.81 Aligned_cols=181 Identities=12% Similarity=0.110 Sum_probs=123.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC----------CccceEEEEcc
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF----------VPQRTAAYISQ 202 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 202 (1425)
...+|+++ +.|.+|++++|+||||||||||+++|+|..+|+ .|.|.+.|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999998 89999988642111 01245677776
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
.+. ...+.+.-.... ..+ .+ .....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~~----------~~~--------------------------------ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTA----------TTI--------------------------------AE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHhcc----cc
Confidence 432 222222111000 000 00 000001 01
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCE-----EEEEEecChhhH
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGT-----AVISLLQPAPET 357 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t-----~ii~~~q~~~~~ 357 (1425)
..+--+.+..+|+|| |||++| +++|++ |+|||+....++.+.++++.+..+++ +|+..+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000002244699999 899999 688877 99999999999999998874312344 5555667765
Q ss_pred HhhcCeEEEEcCCeEEEecChhHH
Q 047682 358 YDLFDDIILISEGQIVFQGPREHV 381 (1425)
Q Consensus 358 ~~~~D~vilL~~G~iv~~G~~~~~ 381 (1425)
..+||++++|.+|+++..|+.++.
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 678999999999999999987765
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-16 Score=184.59 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=121.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----------ccccceEEEeecCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----------ETFARISGYCEQND 921 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~~ 921 (1425)
..+|+++ +.|.+||+++|+||||||||||+++|+|...++ .|.+.+.|.+..+ ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4589999 999999999999999999999999999976543 6888888864211 12345677887754
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEE
Q 047682 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001 (1425)
Q Consensus 922 ~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ill 1001 (1425)
. ...+.+.-.. ....+.+.....+ .+...-...+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 2222221100 0000111111111 01000001245799999 899999 688887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+|||+.....+.+.++++.+ .|. ||++++|+.+ ...+|+++++.+ |+++..|++
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999874 477 8999999987 356899999986 788887764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-15 Score=169.39 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=92.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC----CcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL----KLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~----~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
+-+++|++++|+||||||||||++.|+|...+.. .-.|.+.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 4699999999999999999999999999654420 01345666654210 01233344443222222 3333332
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh-
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG- 296 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG- 296 (1425)
+.. ..+++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 211 12222
Q ss_pred hhhhHHHHHHHh-------cCCcEeEEecCCCCCChHH------------HHHHHHHHHHHHHhcCCEEEEEEecChh--
Q 047682 297 QRKRVTTGEMLV-------GPALALFMDEISTGLDSST------------TFQIVTSLRQIIHILNGTAVISLLQPAP-- 355 (1425)
Q Consensus 297 qrqRvsia~al~-------~~p~illLDEptsgLD~~t------------~~~i~~~L~~~~~~~~~t~ii~~~q~~~-- 355 (1425)
+++++..+++++ .+|+++++||||+++|+.. ..++++.|+++++..+.|+|+ ++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~-vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV-TNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEE-EEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEE-EeecccCc
Confidence 222233343333 4899999999999999842 237888888887766555555 677444
Q ss_pred --hHHhhcCeEEEEcCCe
Q 047682 356 --ETYDLFDDIILISEGQ 371 (1425)
Q Consensus 356 --~~~~~~D~vilL~~G~ 371 (1425)
.+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 3788999999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-15 Score=192.53 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=97.9
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
++.+++|||+.+++|++++|+|||||||||||+++++...... .|...+.. ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 3579999999999999999999999999999999975211000 01101100 0011111 1111122211
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD 1010 (1425)
+++ .. +.+.+|+|++|++.|+++ +.+|++++|||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 134689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCccHHHHHhcCE
Q 047682 1011 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 1011 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
+.....+. .+++.+.+ .|+|||++||+++ +.+++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99988887 67777765 5999999999975 4555554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-16 Score=171.14 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=93.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC--CCCCc---eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g--~~~~~---~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+-+++|++++|+||||||||||+++|+| ..+++ ...+.+.+++..... .+.++++.|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5699999999999999999999999998 33211 123456666543100 0112223332222211 2222211
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH-HHHHHHHHHHHhh-------CCcEEEEeCCC
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1006 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG-qrqRl~ia~~L~~-------~p~illLDEPT 1006 (1425)
+. ...+.+ +++++..+.+++. +|+++++||||
T Consensus 96 ----------------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 ----------------------------VA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ----------------------------EE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ----------------------------EE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 113333 3344566666666 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCccH---HHHHhcCEEEEEeCC
Q 047682 1007 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1007 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~fD~v~~l~~G 1055 (1425)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999983 2 2367777877764 49999999995431 266788999999874
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-17 Score=178.63 Aligned_cols=145 Identities=15% Similarity=0.141 Sum_probs=111.2
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHHhhc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS--PNVTVYESLLYSAWL 939 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv~E~l~~~~~l 939 (1425)
.++|+++||+||||||||||+++|+|...+ .++|++|++.++ ..+|++|++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999986421 368999998776 5689998865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------
Q 047682 940 RLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1008 (1425)
Q Consensus 940 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq----rqRl~ia~~L~~~p~illLDEPTsg------- 1008 (1425)
..+... ..+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123466777887776655443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCc
Q 047682 1009 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1038 (1425)
Q Consensus 1009 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1038 (1425)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-16 Score=170.95 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=104.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCC--CCCCHHHHHHhhhh
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHI--GEMTVRETLAFSAR 221 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 221 (1425)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 488999987665 56799988765321
Q ss_pred hcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh----
Q 047682 222 CQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ---- 297 (1425)
Q Consensus 222 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq---- 297 (1425)
.. . ..........++.+++.+..+.. ...+|+||
T Consensus 61 ~~---~----------------------------------~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---D----------------------------------AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG---G----------------------------------GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch---h----------------------------------hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 0 00011234456667776544432 34589996
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCC-------CChHHHHHHHHHHHHHHHhcCCEEEEEEe
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTG-------LDSSTTFQIVTSLRQIIHILNGTAVISLL 351 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsg-------LD~~t~~~i~~~L~~~~~~~~~t~ii~~~ 351 (1425)
+||+++|++++.+|+++++||||++ ||+.....+.+.+++..+..+.|++.+.|
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4789999999999999999999999 99999999999888764444555554334
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-15 Score=199.34 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=110.6
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEE-EEccCCC
Q 047682 134 FTILKDVNGIVKP-------SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAA-YISQHDV 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~ 205 (1425)
..+++|+|+.+++ |++++|+||||||||||||.+ |.+.+ ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 98753 12344 9999753
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
.+||.|+|.. + +|+.+..+
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4555554421 0 01100000
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHH-HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTT-FQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~-~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.+...+|++++ ++++|++++.+|+++|||||++|+|+... ..++..|+.+.+..+.+ ++.++|..+.+...+|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~-vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCR-TLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCE-EEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHhCCcc
Confidence 11124677666 49999999999999999999999999885 44678888886543444 455688888888889998
Q ss_pred EEEcCCeEE--EecChhH
Q 047682 365 ILISEGQIV--FQGPREH 380 (1425)
Q Consensus 365 ilL~~G~iv--~~G~~~~ 380 (1425)
.++ +|++. +.|+.++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5565443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-16 Score=169.75 Aligned_cols=159 Identities=22% Similarity=0.253 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhhcCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 225 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 225 (1425)
|++++|+||||||||||+++|+|.++ + +| |.++|.+..+.. .++.++|++|+. .. + ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g--~-~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SG--T-RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TS--C-EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--cc--c-eehh---hcccc-
Confidence 78999999999999999999999987 6 89 999887764432 257799999963 11 1 1111 00000
Q ss_pred CCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH-HH
Q 047682 226 GSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT-TG 304 (1425)
Q Consensus 226 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs-ia 304 (1425)
.++ +...+..+|.. ...+|||||+++. ++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~~~-~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVGQY-VVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESSSS-EECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccceE-EEcchHHHHHHHHHHh
Confidence 000 00012244433 3459999999984 44
Q ss_pred H---HHhcCCcEeEEec--CCCCCChHHHHHHHHHHHHHHHhcCCEEEE---EEecChhhHHhhcCeEEEEcCCeEEEec
Q 047682 305 E---MLVGPALALFMDE--ISTGLDSSTTFQIVTSLRQIIHILNGTAVI---SLLQPAPETYDLFDDIILISEGQIVFQG 376 (1425)
Q Consensus 305 ~---al~~~p~illLDE--ptsgLD~~t~~~i~~~L~~~~~~~~~t~ii---~~~q~~~~~~~~~D~vilL~~G~iv~~G 376 (1425)
+ |+..+|++++||| |+..+|.... +.|+++.+. ..++|+ +++|..+ ..+.|+|..+.+|+|+...
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~----~~l~~~l~~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFI----QAVRQTLST-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHH----HHHHHHHHC-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHH----HHHHHHHhC-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5889999999999 8988998764 444444432 345553 2335543 3567888888889987643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-15 Score=188.79 Aligned_cols=133 Identities=20% Similarity=0.131 Sum_probs=97.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..+++|+|+. |++++|+|||||||||||++|+|..... ..|.+ ... .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~------vpa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSF------VPA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCC------BSS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCce------eeh--hccceeeHHH---hhccCCHHH
Confidence 5699999999 9999999999999999999999843100 01211 111 1234677766 445556555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1006 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L--~~~p~illLDEP---T 1006 (1425)
++. .++|+|+++++.+|+++ +.+|++++|||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCccHHHHHhc
Q 047682 1007 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1046 (1425)
Q Consensus 1007 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~f 1046 (1425)
++||..+. ..+++.|++ .|+|+|++||+++ ..+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 99999875 567777766 4899999999964 44443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-15 Score=178.37 Aligned_cols=169 Identities=19% Similarity=0.191 Sum_probs=100.4
Q ss_pred eeeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCC-CcccE-EEECCccCCCCCccceEEEEccCCCCCCC
Q 047682 135 TILKDV-NGIVKPSRLTLLLGPPASGKTTLLLALAGKL--DPSL-KLSGR-VTYNGHNMDEFVPQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 135 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~-~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 209 (1425)
+.|+++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|+ |++++.+.- .++++++++|+..+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 346665 6899999999999999999999999999987 4440 11367 888886431 13456667775443333
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555554432100
Q ss_pred cccCChhhhhhHHHHHHHh-------cCCcEeEEecCCCCCChHH------------HHHHHHHHHHHHHhcCCEEEEEE
Q 047682 290 LRGISGGQRKRVTTGEMLV-------GPALALFMDEISTGLDSST------------TFQIVTSLRQIIHILNGTAVISL 350 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~-------~~p~illLDEptsgLD~~t------------~~~i~~~L~~~~~~~~~t~ii~~ 350 (1425)
-|++|++++.++++++ .+|+++++||||+++|+.. ..++++.|+++++..+.|+|+ +
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii-~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV-T 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEE-E
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEE-E
Confidence 0223333333333333 7899999999999999852 356677777777665555555 5
Q ss_pred ecChhhHHhhcCeEEEEcCCeEEEecCh
Q 047682 351 LQPAPETYDLFDDIILISEGQIVFQGPR 378 (1425)
Q Consensus 351 ~q~~~~~~~~~D~vilL~~G~iv~~G~~ 378 (1425)
+|........+++......|+++.++..
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EECC---------------CCCCCTTCS
T ss_pred cccccccccccCCccccCCcceEeecCc
Confidence 6666555555666777778887766553
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-16 Score=181.06 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=85.5
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC-CCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
++.+++++++.| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|++.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 457999999998 99999999999999999985 33 2356 77777654332223457899998888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-C
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-G 1008 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs-g 1008 (1425)
.|+.-+..... . .+..+..++.+. +..+.. .+++|||||||+.+||+++ ++++||||+ |
T Consensus 81 ~Dt~g~~~~~~-~----~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAIN-C----RDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcC-c----HHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 99887653221 0 011011122221 112222 3469999999999988875 999999998 4
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCcc
Q 047682 1009 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1039 (1425)
Q Consensus 1009 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1039 (1425)
||+... +.++++.+. +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 555666543 788999999964
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=144.60 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=68.9
Q ss_pred CcccccCChhhhhhHHHH------HHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 047682 287 DEMLRGISGGQRKRVTTG------EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia------~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~ 360 (1425)
++.+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.|+|+ ++|+. +..+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii-vsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVIL-VSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEE-EESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEE-EEChH-HHHHh
Confidence 445677999999999876 8999999999999999999999999999999987542 455555 56666 67899
Q ss_pred cCeEEEE--cCCeE
Q 047682 361 FDDIILI--SEGQI 372 (1425)
Q Consensus 361 ~D~vilL--~~G~i 372 (1425)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-15 Score=175.35 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=79.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK-LDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 210 (1425)
+++.+++|+++.| +|+||||||||||++.|.|. ..|+ +| |.++|.++..-...+.++|++|++.....+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 4567999999998 99999999999999999997 7776 78 888887664322235689999988878889
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||.||..++..... ..+++ ...+.+.+. .+ ...
T Consensus 79 tv~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~ 111 (301)
T 2qnr_A 79 TVVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYL 111 (301)
T ss_dssp EEEEEC------------CT-----------------------------------THHHHHHHH------HH-----HHH
T ss_pred chhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHH
Confidence 99999887532110 00000 001111111 11 234
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCC-CChHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTG-LDSSTTFQIVTSLRQIIHILNGTAVISLLQPA 354 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsg-LD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~ 354 (1425)
+++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ..+.+++...|+.
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 569999999999998885 9999999985 999872 45555532 1234445445544
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-15 Score=166.24 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=93.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
++|+|+| +++|++++|+||||||||||+++|+|.++|+ .+|+|.++|.++. |++|+...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~-------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKS-------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSS--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCcce--------
Confidence 4899999 8999999999999999999999999998763 1799999987642 33332100
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
+. .+ +.+|++. ..+
T Consensus 74 ---~v--~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 74 ---IV--NQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp ---EE--EE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred ---ee--eH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 00 00 0011210 012
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
|++||++|..+|+++++|||| |..+...++ +. +. .+.++++ ++|... ..+.+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~-t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFG-TLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEE-EECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEE-EeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 988865544 33 22 3555544 555544 6788999988854
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-14 Score=188.13 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=102.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
+.+++|+|+. ++|++++|+|||||||||||++|+|....+. .|...+.. ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 9999999999999999999999998421000 12111111 123555555 444555555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
++... .+.+|+|+++ +..+..++.+|++++|||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 54210 1235666654 4555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 1012 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 1012 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
.....+ +.+++.+.+ .|+|+|++||+++ +.+.+|++..+.+ |++.+.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 776665 778888887 4999999999985 4567787655654 454443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-14 Score=183.86 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=59.3
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHH-HHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE-Ec
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIV-TSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL-IS 368 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~-~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil-L~ 368 (1425)
..+|+|++|++.++++ +.+|+++||||||+|||+.....+. ..++.+.+..+.++++ ++|.. ++.+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~-vTH~~-el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF-VTHYP-PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEE-EeCcH-HHHHHHhhcccceE
Confidence 4589999999999998 8999999999999999999999887 6667665544555555 56664 55567765421 33
Q ss_pred CCeEE
Q 047682 369 EGQIV 373 (1425)
Q Consensus 369 ~G~iv 373 (1425)
++++.
T Consensus 811 n~~~~ 815 (918)
T 3thx_B 811 NYHMG 815 (918)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=167.37 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=63.1
Q ss_pred ccCChhhhhhHHHHHHHh----cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 291 RGISGGQRKRVTTGEMLV----GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~----~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.. .++.++.++|+ .+..+.||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999988642 23444445666 567889999999
Q ss_pred Ec
Q 047682 367 IS 368 (1425)
Q Consensus 367 L~ 368 (1425)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-15 Score=172.72 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=101.9
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TF--ARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999996443 257899999875321 11 245899999998889999999987
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~ 1014 (1425)
+...-. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~--~d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG--YD----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT--CS----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC--CC----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 642110 00 012222333322221 2455669999999999999994333 3444444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCcc
Q 047682 1015 AIVMRTVRNTVDT-GRTVVCTIHQPS 1039 (1425)
Q Consensus 1015 ~~i~~~l~~~~~~-g~tvi~~~H~~~ 1039 (1425)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4556666666544 899999999853
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-15 Score=169.28 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=103.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHHHH
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---------QRTAAYISQHDVHIGEMTVRETL 216 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 216 (1425)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+...... ++.++|++|+....|..||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 78999999999999999999999999987 9999999988754321 24589999998888889999999
Q ss_pred HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 047682 217 AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296 (1425)
Q Consensus 217 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 296 (1425)
.++... + ++. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~----~d~--------------------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-G----YDL--------------------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-T----CSE--------------------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-C----CCE--------------------------------------EEecCCCCCCchH--------HHHHHH
Confidence 875321 1 000 0011122221111 124455
Q ss_pred hhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 047682 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353 (1425)
Q Consensus 297 qrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~ 353 (1425)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.|.++ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 58999999999999995554 566665566677777776555666665 4554
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-15 Score=188.73 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=109.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCCcccEEEECCccCC------CCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 150 TLLLGPPASGKTTLLLALAGKLDP-SLKLSGRVTYNGHNMD------EFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
++|+|||||||||||++|+|...| + +|.|+++|.++. ....++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 6 899999998852 112357899999999999999999999876432
Q ss_pred cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH
Q 047682 223 QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302 (1425)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 302 (1425)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 12222
Q ss_pred HHHHHhcCCcEeEEecC------CCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh----hHHh---hc-----CeE
Q 047682 303 TGEMLVGPALALFMDEI------STGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP----ETYD---LF-----DDI 364 (1425)
Q Consensus 303 ia~al~~~p~illLDEp------tsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~----~~~~---~~-----D~v 364 (1425)
++.+....|+++++||| |+|||+....++.+.++++.....+.+++.++|+.+ +..+ .. ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22333458999999999 999999999999999998755444555566666544 2222 22 457
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8899998888887655543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-15 Score=177.43 Aligned_cols=164 Identities=19% Similarity=0.148 Sum_probs=97.1
Q ss_pred eeece-eEEEeCCeEEEEEcCCCCChhhHHhhhcCCC--C--CceEEEE-EEEcCccCCcccccceEEEeecCCCCCCCC
Q 047682 854 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--T--GGYITGN-IKISGYPKKQETFARISGYCEQNDIHSPNV 927 (1425)
Q Consensus 854 iL~~v-s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~--~--~~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 927 (1425)
.|+++ ++.+++|++++|+||||||||||++.|++.. . .|...|. +++++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 34444 5889999999999999999999999999853 2 1111255 778775421 11233444444332221
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh-------hCCcEE
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1000 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~-------~~p~il 1000 (1425)
++.||+.+. +. --|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 222222110 00 01567778888888887 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 1001 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 1001 lLDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|... +.-..|+...... ||+++.++
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~ 308 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHS 308 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTT
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeec
Confidence 9999999999852 3566667777765 4899999999865 3333444444444 45544333
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-14 Score=182.73 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=94.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4688999998 99999999999999999999999863 33 45532 1 01245677766 3444555
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55432 14
Q ss_pred CChhhhhhHHHHHHH--hcCCcEeEEecC---CCCCChHHH-HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhc
Q 047682 293 ISGGQRKRVTTGEML--VGPALALFMDEI---STGLDSSTT-FQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361 (1425)
Q Consensus 293 LSGGqrqRvsia~al--~~~p~illLDEp---tsgLD~~t~-~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~ 361 (1425)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.++++ ++|.. +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~-~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYF-ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCH-HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCH-HHHHhh
Confidence 899999999999999 999999999999 999998875 567777765 2556555 56654 334444
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=157.57 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=102.0
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
-+++|++++|+||||||||||++.+++.... |.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4889999999999999999999999974322 333 22433211 2346777665532 11112211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHHH---H
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 1015 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs--gLD~~~~---~ 1015 (1425)
.+... ...+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 12222 2246677888887765543 456999998865 68889999999999999 9997544 7
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCcc
Q 047682 1016 IVMRTVRNTV-DTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1016 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1039 (1425)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-14 Score=168.76 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=84.8
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
...+|++++|+|||||||||||++|+|..... ..|.|...+.+... ......+++.|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecccc--------------
Confidence 67899999999999999999999999954311 02333322222111 111112333333221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~ 1020 (1425)
++..+ +||++|..+|++|++|||| |..+...
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~---- 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIRL---- 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH----
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH----
Confidence 22222 8999999999999999999 6665443
Q ss_pred HHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1021 l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+.+++.+|.||++|+|+.+. . +.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 34456679999999999873 3 789999988653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-14 Score=159.19 Aligned_cols=168 Identities=12% Similarity=0.119 Sum_probs=103.7
Q ss_pred eeeeceeE-EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~-~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+. +..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~----------------------~~~~ 65 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE----------------------SRDS 65 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS----------------------CHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc----------------------CHHH
Confidence 46778875 8999999999999999999999999974321 112333322211 1111
Q ss_pred HHHHHhhccCCCCCCHHHHH--HHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEEeCCCC
Q 047682 932 SLLYSAWLRLPPDVDSETRR--MFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTS 1007 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illLDEPTs 1007 (1425)
.......+. ......... ..++...+.++ ... .....|.+|.++...+.....+|+ ++++||||+
T Consensus 66 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 66 IIRQAKQFN--WDFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp HHHHHHHTT--CCCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred HHHHHHHhc--chHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 110000000 000000000 00000000000 000 012359999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCcc-------HHHHHhcCEEEEEeCC
Q 047682 1008 GL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1008 gL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~fD~v~~l~~G 1055 (1425)
++ |+.....+++.|+++++ .|.|||+++|+.. ..+...+|++++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 99999999999999864 5899999999973 2367789999999863
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-13 Score=149.21 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=62.4
Q ss_pred CChhhhhhHHHHHHHhcCCc--EeEEecCCCCC--ChHHHHHHHHHHHHHHHhcCCEEEEEEecCh--------hhHHhh
Q 047682 293 ISGGQRKRVTTGEMLVGPAL--ALFMDEISTGL--DSSTTFQIVTSLRQIIHILNGTAVISLLQPA--------PETYDL 360 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~--illLDEptsgL--D~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~--------~~~~~~ 360 (1425)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+ .+++.++|.. +.+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccCcccccccccchhee
Confidence 58999988888877778999 99999999888 99999999999999987655 4555566766 568889
Q ss_pred cCeEEEEcCC
Q 047682 361 FDDIILISEG 370 (1425)
Q Consensus 361 ~D~vilL~~G 370 (1425)
+|+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-15 Score=164.40 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~ 943 (1425)
|++++|+||||||||||+++|+|... . +| |.++|....+ ...++.+||++|+.. ... +++ +.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~~- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGLE- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hccccc-
Confidence 78999999999999999999999653 1 35 7777765533 235678899999751 111 111 111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHHH
Q 047682 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1017 (1425)
Q Consensus 944 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl-~ia~---~L~~~p~illLDE--PTsgLD~~~~~~i 1017 (1425)
.+ ....+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......+
T Consensus 68 -~~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 68 -PP-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp -CC-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred -CC-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 00 00011233332 235999999988 4444 5789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1018 MRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1018 ~~~l~~~~~~g~tvi~----~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
.+++ +...++|+ ++|+.+ ....|+|..+. +|+++...+-
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSS
T ss_pred HHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChH
Confidence 5444 34445543 238864 13456666665 4676665543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.5e-13 Score=153.05 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=99.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
.+++|++++|+||||||||||++.+++.+. .|++ +.|.+.. ....+.|+..++. . +.+.- +.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~~--r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIHH--RL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHHH--HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHHH--HH
Confidence 489999999999999999999999998654 3554 3344321 1346888877543 1 11110 00
Q ss_pred cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH
Q 047682 223 QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302 (1425)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 302 (1425)
...+. + . .....+.+++.+++.+..+. .+..+|+||++++
T Consensus 88 ~~~g~-------------~------~---------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALGA-------------H------L---------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp HHHHT-------------T------S---------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred HHHHh-------------h------c---------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 00000 0 0 01123445677777665443 3446999998876
Q ss_pred HHHHHhcCCcEeEEecCCC--CCChHHH---HHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 303 TGEMLVGPALALFMDEIST--GLDSSTT---FQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 303 ia~al~~~p~illLDEpts--gLD~~t~---~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|+ ++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~-i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE-EecCCCc
Confidence 67888999999999999 9998654 78888999987666666555 5665543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=178.72 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=101.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
..+++|+|+. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| .+..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974211 012 11100 1123555544 34444555
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 544321 1125
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQI-VTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i-~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|+|++ +++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+.++++ ++|.. +..+++|++..+.+|++
T Consensus 671 ~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~-~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF-ATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE-EeCCH-HHHHHhhhhhceEEEEE
Confidence 66665 44444556899999999999999999887775 66777775533555555 56665 45678998877788887
Q ss_pred EEec
Q 047682 373 VFQG 376 (1425)
Q Consensus 373 v~~G 376 (1425)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=137.97 Aligned_cols=85 Identities=11% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCcCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE
Q 047682 976 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~----~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~ 1051 (1425)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999864 57899999996 46789999986
Q ss_pred Ee--CCcEEEEECC
Q 047682 1052 MK--RGGYEIYVGP 1063 (1425)
Q Consensus 1052 l~--~Gg~~~y~G~ 1063 (1425)
+. +|.-.++...
T Consensus 139 v~~~~g~s~~~~~~ 152 (173)
T 3kta_B 139 VSMRDGVSKVVSLS 152 (173)
T ss_dssp EEEETTEEEEEECC
T ss_pred EEecCCEEEEEEEE
Confidence 54 4433444433
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-14 Score=155.51 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=93.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC---CceEEEEEEEcCc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISGY 903 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~---~~~~~G~i~i~g~ 903 (1425)
++++|+++.+. ..++++ +.+++|..++|+|+||||||||++.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56777777663 135666 7889999999999999999999999999651 0122343322110
Q ss_pred c-CC-cccccceEEEeecCCCCCCCCC---HHHHHHHHhh-ccC----------CCCCCHHHHHHHHHHHHHHcCCcccc
Q 047682 904 P-KK-QETFARISGYCEQNDIHSPNVT---VYESLLYSAW-LRL----------PPDVDSETRRMFLEEIMELVELNPLR 967 (1425)
Q Consensus 904 ~-~~-~~~~~~~~gyv~Q~~~~~~~lT---v~E~l~~~~~-lr~----------~~~~~~~~~~~~v~~~l~~l~l~~~~ 967 (1425)
- .. ...+....|+..++ .+... .+..+..... .+. ...... .+..+.+.++..++....
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE
Confidence 0 00 00000001111100 00000 1111111110 000 001111 122344555556654321
Q ss_pred ccccCCCCCCcCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 047682 968 QSLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030 (1425)
Q Consensus 968 ~~~~g~~~~~~lSgGqrqR-l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1030 (1425)
+++. ...+|+||||| +..+++++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 143 ---v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 ---LLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ---EEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ---EEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 1111 34589999999 89999999999999999999999999999999999998766644
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-14 Score=170.55 Aligned_cols=162 Identities=11% Similarity=0.101 Sum_probs=93.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
+.++|++..+. ++.+++|+|+.| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-- 70 (418)
T 2qag_C 12 VGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-- 70 (418)
T ss_dssp ---CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------
T ss_pred EEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--
Confidence 66777766542 346899999998 999999999999999999964311112222222211
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
....+.++|++|++.+.+.+||.|++.+..... .... ...+.+.+ + ..++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHHH
Confidence 112345799999988888899999987754321 0110 11111111 1 1366778889
Q ss_pred HHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 047682 987 LTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038 (1425)
Q Consensus 987 l~ia~~L~~~p~---illLDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1038 (1425)
+.||++++.+|+ +|++|||| +|||+... +.++.+. .+.+||+++|.-
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~ 177 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKA 177 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEEST
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEcc
Confidence 999999999999 99999999 69998873 3444554 378888888753
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=163.61 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=70.5
Q ss_pred CcC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 977 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 977 ~~l-SgGqrqRl~ia~~L~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
..| |||||||++||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ |+|||++||+|. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 899999999985 556799999997
Q ss_pred CC
Q 047682 1054 RG 1055 (1425)
Q Consensus 1054 ~G 1055 (1425)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-14 Score=176.05 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=103.4
Q ss_pred EEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHHHHHHhhccC
Q 047682 868 TALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK------QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 941 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~ 941 (1425)
+||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999997542 14799999997731 13456789999999999999999999976432110
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHH
Q 047682 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1015 (1425)
Q Consensus 942 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP------TsgLD~~~~~ 1015 (1425)
. .. .++| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~---------------------~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 G---------------------EG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp C---------------------SS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred C---------------------Cc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0 00 0111 1112222223458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCcc------HHHHHhc-----CEEEEEeCCcEEEEECC
Q 047682 1016 IVMRTVRNTVDT--GRTVVCTIHQPS------IDIFEAF-----DELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 1016 ~i~~~l~~~~~~--g~tvi~~~H~~~------~~~~~~f-----D~v~~l~~Gg~~~y~G~ 1063 (1425)
.+.+.++++.++ +.++++++|+.. ..+.... ..|+++.++ -.+..|.
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~-Dlv~~g~ 231 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP-DLVDKGT 231 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG-GGSSSSS
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch-hhcCccc
Confidence 999999997543 567888999865 2233333 346777764 3344443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-15 Score=178.10 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=98.0
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----cEEEEC----CccCCCCCcc--ceEEEEccC
Q 047682 136 ILKDVNGIVKP--SRLTLLLGPPASGKTTLLLALAGKLDPSLKLS----GRVTYN----GHNMDEFVPQ--RTAAYISQH 203 (1425)
Q Consensus 136 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~----G~~~~~~~~~--~~~~yv~Q~ 203 (1425)
+.+.|++.|++ |+.++|+||||||||||+++|+|.++|+ + |++.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45679999999 9999999999999999999999999987 6 777653 2221 10000 112222221
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
.. ....|++||+.+. + ....++
T Consensus 233 ~~-~~~~t~~~nl~~~---------------------------~------------------------------~~~~~~ 254 (365)
T 1lw7_A 233 YI-DYAVRHSHKIAFI---------------------------D------------------------------TDFITT 254 (365)
T ss_dssp HH-HHHHHHCSSEEEE---------------------------S------------------------------SCHHHH
T ss_pred HH-HHHHhccCCEEEE---------------------------e------------------------------CCchHH
Confidence 10 0011111111110 0 000001
Q ss_pred cccCcccccCChhhhhhHHHHHHHh-cCCcEeEEec---CC------CCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLV-GPALALFMDE---IS------TGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~-~~p~illLDE---pt------sgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~ 353 (1425)
....+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++ +.++
T Consensus 255 -----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~ 328 (365)
T 1lw7_A 255 -----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP 328 (365)
T ss_dssp -----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS
T ss_pred -----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC
Confidence 11236677788888888775 5999999999 65 5899999999999998876544555555 4555
Q ss_pred hhhHHhhcCeEEEEc
Q 047682 354 APETYDLFDDIILIS 368 (1425)
Q Consensus 354 ~~~~~~~~D~vilL~ 368 (1425)
.+..+++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 35556666555443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=135.87 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=98.2
Q ss_pred eeecee-EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 047682 854 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 854 iL~~vs-~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+ |+..++. .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~-----------------~i~~~~~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVA-----------------YVDTEGG----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEE-----------------EEESSCC----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEE-----------------EEECCCC----CCH-HH
Confidence 466665 4799999999999999999999999998 221 1222 3322221 111 11
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH--HHHHHHHHHHHhhC-CcEEEEeCCCCCC
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1009 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG--qrqRl~ia~~L~~~-p~illLDEPTsgL 1009 (1425)
+.-... . ...+. +++++.+.+ ...|++ +++++..+++++.+ |+++++||||+++
T Consensus 62 ~~~~~~-~--~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMAE-T--RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHH-T--TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHH-h--cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110000 0 01111 122222211 123344 46788889999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCccH------------HHHHhcCEEEEEeCC
Q 047682 1010 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1010 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~fD~v~~l~~G 1055 (1425)
|... ...+++.|++++++ |+|||+++|.... .+...+|.+++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24566668887654 8999999998641 366789999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-13 Score=150.12 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=97.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH----HHHHHh
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV----RETLAF 218 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~f 218 (1425)
..++|++++|+||||||||||+++|+|..+|+ ..+|.|.+++.+.... .++.++|++|++..++.+|+ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 57899999999999999999999999999863 3589999998776432 23568999997554443333 122111
Q ss_pred hhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhh
Q 047682 219 SARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298 (1425)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 298 (1425)
. |+ +.|-.+
T Consensus 90 ~------------------------------------------------------------------~~-----~yg~~~ 98 (219)
T 1s96_A 90 F------------------------------------------------------------------GN-----YYGTSR 98 (219)
T ss_dssp T------------------------------------------------------------------TE-----EEEEEH
T ss_pred H------------------------------------------------------------------hc-----cCCCCH
Confidence 1 10 111111
Q ss_pred hhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecCh
Q 047682 299 KRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPR 378 (1425)
Q Consensus 299 qRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~ 378 (1425)
++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+.++|...++.+ |+ +..| .|+.
T Consensus 99 ~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~ 155 (219)
T 1s96_A 99 EA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDSE 155 (219)
T ss_dssp HH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSCH
T ss_pred HH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCCH
Confidence 11 23344557999999 99999999988765 25566666777666654 43 6777 6788
Q ss_pred hHHHHHHH
Q 047682 379 EHVLEFFK 386 (1425)
Q Consensus 379 ~~~~~~F~ 386 (1425)
+++...+.
T Consensus 156 e~i~~rl~ 163 (219)
T 1s96_A 156 EVIAKRMA 163 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87765543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-13 Score=160.10 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=86.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 211 (1425)
..+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|++|++...+.+|
T Consensus 22 ~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 22 YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEE
T ss_pred CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 3456999999998 99999999999999999999865311 2222222111 111246899999888888899
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|.||+.++...... ... ....+++ + .
T Consensus 92 v~Dt~g~~~~~~~~----------------------~~~--------------~~i~~~i-~-----------------~ 117 (418)
T 2qag_C 92 IVDTPGFGDAVDNS----------------------NCW--------------QPVIDYI-D-----------------S 117 (418)
T ss_dssp EEECC---------------------------------C--------------HHHHHHH-H-----------------H
T ss_pred eeechhhhhhccch----------------------hhH--------------HHHHHHH-H-----------------H
Confidence 99998875321100 000 0011111 0 1
Q ss_pred cCChhhhhhHHHHHHHhcCCc---EeEEecCC-CCCChHHHHHHHHHHHHHHHhcCCEEEEEEe
Q 047682 292 GISGGQRKRVTTGEMLVGPAL---ALFMDEIS-TGLDSSTTFQIVTSLRQIIHILNGTAVISLL 351 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~---illLDEpt-sgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~ 351 (1425)
.++.+.++|++|||+++.+|+ ++++|||| +|||+... ++++.+.. +.++|++++
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEE
Confidence 366788899999999999999 99999999 69998762 44444432 455555443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-13 Score=157.44 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=43.0
Q ss_pred HHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 302 TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 302 sia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+||++|..+|+++++|||| |..+...+ .+.+. .|.++ ++++|..... +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~-~G~~v-l~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLA----LTAAE-TGHLV-FGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHH-TTCEE-EEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHh-cCCEE-EEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 76664433 33333 35664 4455665555 889999988655
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.8e-14 Score=152.83 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=86.2
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV----YESLLY 935 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv----~E~l~~ 935 (1425)
-..++|++++|+||||||||||+++|+|..++....|.|.+++.+.... .++.++|++|++..++.+|+ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 3578999999999999999999999999654223678999988765432 23457899987654443333 222211
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~ 1015 (1425)
.+. . .+.| +++ ..+++..+++++|| ||+.++.
T Consensus 90 ~~~-------------------------------~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 FGN-------------------------------Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp TTE-------------------------------E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred Hhc-------------------------------c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 100 0 0112 111 34455668999999 9999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCcc
Q 047682 1016 IVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1016 ~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
.+.+.+. ++.||++++|+++
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998876 5899999999975
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-13 Score=162.48 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=110.2
Q ss_pred eeceeEEEeCCeE--EEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 047682 855 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 855 L~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
|+++|+++++|++ +||+||||||||||+|+|+|..- .|.. +... .....++.++|++|++.+++.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 1211 1111 111224578999999988889999999
Q ss_pred HHHHhhccCCCCCCHH--------HHHHHHHHHHHHc-CCc----cccccc----cC--CCCCCcCCHHHHHHHHHHHHH
Q 047682 933 LLYSAWLRLPPDVDSE--------TRRMFLEEIMELV-ELN----PLRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 993 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~--------~~~~~v~~~l~~l-~l~----~~~~~~----~g--~~~~~~lSgGqrqRl~ia~~L 993 (1425)
+.|+.. .+.. ..++..++.++.. ++. ...|.. +. .+...+++-.+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 865421 1211 1123344555544 443 112222 11 12224677776 7899999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 047682 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1037 (1425)
Q Consensus 994 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1037 (1425)
..+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999986 77779999887754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-14 Score=155.05 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=107.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 226 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 226 (1425)
|++++|+||||||||||+++|++ +. +|.+.++|.++.+. ...++++|.....+..|+++++.+.++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999997 33 78999999765432 23467777654455668888887654321000
Q ss_pred CcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC---cccccC--ChhhhhhH
Q 047682 227 SRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD---EMLRGI--SGGQRKRV 301 (1425)
Q Consensus 227 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~L--SGGqrqRv 301 (1425)
. .. ...+...+. +..+.+ |+|+++|+
T Consensus 73 ~------------~~-------------------------------------~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 73 Q------------ND-------------------------------------VVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp T------------CE-------------------------------------EEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred C------------Cc-------------------------------------EEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 00 000000000 001224 89999998
Q ss_pred HHHH------HHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC-hhhHHhhcCeEEEEcCCeEEE
Q 047682 302 TTGE------MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP-APETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 302 sia~------al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~-~~~~~~~~D~vilL~~G~iv~ 374 (1425)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+.+ ++..+|. ..++.+.+|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~-ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERY-FYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTS-EEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccE-EEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8999998888884 899988777 777776532 2344 4445565 678899999998 9999999
Q ss_pred ecChhHH
Q 047682 375 QGPREHV 381 (1425)
Q Consensus 375 ~G~~~~~ 381 (1425)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=128.34 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=68.6
Q ss_pred cccCChhhhhhHHHHHHHh----cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 290 LRGISGGQRKRVTTGEMLV----GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~----~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.+ ++++|+ ++|+. .+.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~iv-ith~~-~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIV-ITLRD-VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSCH-HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEE-EEecH-HHHHhCCEEE
Confidence 4579999999999999996 56799999999999999999999999998753 345444 55554 5778999998
Q ss_pred EE--cCCeE-EEecChhHHH
Q 047682 366 LI--SEGQI-VFQGPREHVL 382 (1425)
Q Consensus 366 lL--~~G~i-v~~G~~~~~~ 382 (1425)
.+ .+|.. +.....++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 66 46743 3344444443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-12 Score=141.50 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=88.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +..||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 679999999999999999999999998 44 799999998753221 1234678887543 467899998775432
Q ss_pred cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH
Q 047682 223 QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302 (1425)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 302 (1425)
...... . ...+.. +..++++.... . +..+..+|+|++||+.
T Consensus 79 ~~~~~~-~---------~~~~~~--------------------------~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 79 YAKEGY-F---------VILDGV--------------------------VRPDWLPAFTA--L-ARPLHYIVLRTTAAEA 119 (191)
T ss_dssp HHHTSC-E---------EEECSC--------------------------CCTTTTHHHHT--T-CSCEEEEEEECCHHHH
T ss_pred HhccCC-e---------EEEecc--------------------------CcHHHHHHHHh--c-CCCeEEEEecCCHHHH
Confidence 100000 0 000000 00001110000 0 1112359999999999
Q ss_pred HHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHH
Q 047682 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQ 337 (1425)
Q Consensus 303 ia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~ 337 (1425)
++|++.++|+++ +|+.....+.+.++.
T Consensus 120 ~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 120 IERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 999999999876 687766655554443
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-13 Score=140.68 Aligned_cols=78 Identities=18% Similarity=0.060 Sum_probs=66.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
..+++++|+.+++|++++|+||||||||||+|+|+|.+ |+ +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 45899999999999999999999999999999999999 77 899999998774211111 2899987777 89999
Q ss_pred HHHHh
Q 047682 214 ETLAF 218 (1425)
Q Consensus 214 E~l~f 218 (1425)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=135.32 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=57.8
Q ss_pred CChhh--hhhHHHHHHHhcC-CcEeEEecCCCCCChHH--------HHHHHHHHHHHHHhcCCEEEEEEecChh------
Q 047682 293 ISGGQ--RKRVTTGEMLVGP-ALALFMDEISTGLDSST--------TFQIVTSLRQIIHILNGTAVISLLQPAP------ 355 (1425)
Q Consensus 293 LSGGq--rqRvsia~al~~~-p~illLDEptsgLD~~t--------~~~i~~~L~~~~~~~~~t~ii~~~q~~~------ 355 (1425)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899986 99999999999999743 245667788888766666665 555443
Q ss_pred -------hHHhhcCeEEEEcCC
Q 047682 356 -------ETYDLFDDIILISEG 370 (1425)
Q Consensus 356 -------~~~~~~D~vilL~~G 370 (1425)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467899999999754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-12 Score=154.61 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=93.9
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l 933 (1425)
+|++++ +++|++++|+||||||||||+++|+|...+. .+|.|.+.|.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee------------
Confidence 577776 7899999999999999999999999964311 14777666555431 2344567777741
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 047682 934 LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013 (1425)
Q Consensus 934 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~ 1013 (1425)
+|+. ...+ +.+|+.+|..+|++|++|||| |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1211 1124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
.. .+++. +..|.+|++|+|..+ ..+.+||++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 34443 456999999999975 567788887664
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-14 Score=155.85 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~ 944 (1425)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...|+++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 7899999999999999999999732 35678887653221 1346777765444556788887664321100
Q ss_pred CCHHHHHHHHHHHHHHcCCccccccccCC---CCCCcC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHH
Q 047682 945 VDSETRRMFLEEIMELVELNPLRQSLVGL---PGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 1013 (1425)
Q Consensus 945 ~~~~~~~~~v~~~l~~l~l~~~~~~~~g~---~~~~~l--SgGqrqRl~ia~------~L~~~p~illLDEPTsgLD~~~ 1013 (1425)
-+...+.+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ |||+..
T Consensus 72 ----------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 72 ----------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ----------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ----------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0000011110000 001124 888888888888 9999999888884 899988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecC-ccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1014 AAIVMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
... ++.++++.+.+.+||.++|+ ++ ++.+.+|+|+ + .|++++.|++.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 888 88888776567899999998 76 5778899998 5 57888888764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-13 Score=152.66 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 146 PSRLTLLLGPPASGKTTLLLALA---GKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+...++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998887 8999888754321 1123455667777778888999999864321
Q ss_pred -cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH--HhCCcccc-------cccccCccccc
Q 047682 223 -QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIK--VLGLDVCA-------DTMVGDEMLRG 292 (1425)
Q Consensus 223 -~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~lgL~~~~-------~t~vg~~~~~~ 292 (1425)
.+.+-..+ -.+. ..+. .+.+.+ ..++-... -..+.++.+..
T Consensus 102 ~~~~~~il~-------------g~~~-~~~~---------------~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 RRGQHWLLD-------------GFPR-TLGQ---------------AEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp CTTSCEEEE-------------SCCC-SHHH---------------HHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred cCCCeEEEE-------------CCCC-CHHH---------------HHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000000 0000 0000 000000 00000000 00111233445
Q ss_pred CChhhhhhHHHHHHH-hcCCcEeEEe----cCCCCCChHHHHHHHHHHHHHHH
Q 047682 293 ISGGQRKRVTTGEML-VGPALALFMD----EISTGLDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 293 LSGGqrqRvsia~al-~~~p~illLD----EptsgLD~~t~~~i~~~L~~~~~ 340 (1425)
+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.+
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 998 66 677 9999999999 99999999999999999988754
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-13 Score=143.57 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------cc-ceEE----EEccCCCCCCCCCHHHHH
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQ-RTAA----YISQHDVHIGEMTVRETL 216 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 216 (1425)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875333699999998855432 12 2455 788865543 000
Q ss_pred HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 047682 217 AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296 (1425)
Q Consensus 217 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 296 (1425)
+ . .+.. ...+..++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~----------~~~~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S----------EEEG------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C----------HHHH------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C----------hhhh------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 0000 001223333 133 57899987 59999
Q ss_pred hhhhHHHHHHHhcCCcEe-------EEecCCCC---CChHHHHHHHHHHHHHHH
Q 047682 297 QRKRVTTGEMLVGPALAL-------FMDEISTG---LDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 297 qrqRvsia~al~~~p~il-------lLDEptsg---LD~~t~~~i~~~L~~~~~ 340 (1425)
||||++|||+++++|++. .=|.|..+ +|......+.+++.+...
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 999999999999999874 22444322 344556677777766544
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-12 Score=150.67 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=52.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEc-cC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYIS-QH 203 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~ 203 (1425)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~ 230 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSE 230 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC--
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCc
Confidence 349999999999999999999999999999999999998 999999985311111 345688888 54
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-13 Score=149.44 Aligned_cols=142 Identities=14% Similarity=0.041 Sum_probs=89.6
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+..+|++|+.. +..|+.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 67999999999999999999999999743 47789998653221 11234577777543 4678899887654221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~ 1020 (1425)
...... ..++.+++..++...... +. .+..+|+|++||+.++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000000 000111111111111100 11 12459999999999999999999887 688777777776
Q ss_pred HHHHH
Q 047682 1021 VRNTV 1025 (1425)
Q Consensus 1021 l~~~~ 1025 (1425)
++.+.
T Consensus 144 ~~~l~ 148 (191)
T 1zp6_A 144 FADLG 148 (191)
T ss_dssp TTCCG
T ss_pred HhccC
Confidence 65543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=142.85 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.1
Q ss_pred CCcCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCE
Q 047682 976 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 976 ~~~lSgGqrqRl------~ia~~L~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
+..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||+|. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 457999999988 567888999 99999999999999999999999999874 3579999999985 5688999
Q ss_pred EEEEeCCc
Q 047682 1049 LFLMKRGG 1056 (1425)
Q Consensus 1049 v~~l~~Gg 1056 (1425)
+++|++.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-13 Score=146.23 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=52.8
Q ss_pred HHHHHhCCcccccccccCcccccCChhhhhh-HHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHH
Q 047682 270 YVIKVLGLDVCADTMVGDEMLRGISGGQRKR-VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 270 ~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR-vsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~ 340 (1425)
..++..+++.. .++++ ...+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.++..
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34455666532 22322 23499999999 8999999999999999999999999999999999988754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-12 Score=151.93 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=99.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC-cccccceEEEee-cCCCCCCCCCHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK-QETFARISGYCE-QNDIHSPNVTVYE 931 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~-~~~~~~~~gyv~-Q~~~~~~~lTv~E 931 (1425)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999997653 3689999985321 122456678887 54321
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
+++++...|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012223456666777777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1012 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..+.+.|+.+.....|++.++|..+ ....+||+..|..++
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2355667666544458899999975 567889999998753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-14 Score=169.88 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCCC------ceEEEEEEEcCccCCcc------------------cccceEEEe---e
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNIKISGYPKKQE------------------TFARISGYC---E 918 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 918 (1425)
++++|+|+||||||||||.|.|...+ ....|+|.+||.+.... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986421 01357788888764321 223345556 5
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCC--CHH-HHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhh
Q 047682 919 QNDIHSPNVTVYESLLYSAWLRLPPDV--DSE-TRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995 (1425)
Q Consensus 919 Q~~~~~~~lTv~E~l~~~~~lr~~~~~--~~~-~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~ 995 (1425)
|+..+.+..++.|+..++......... ..+ ..+..++.++..+++.+..+.. .++|+|||||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 665555666777765432000000000 000 0000111122233333333332 2589999999999899999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD 1047 (1425)
+|+++ ||| ..+.+.|+++. .+.||++++|.+. +.-..+|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 99987 999 67888888875 5899999999864 3333443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-12 Score=150.12 Aligned_cols=164 Identities=14% Similarity=0.072 Sum_probs=99.2
Q ss_pred cceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRL--TLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 210 (1425)
..+ |+|+|+.+++|++ ++|+||||||||||+|+|+|..- .|..... ......++.++|++|++.+++.+
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH---TQPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC---CCccceEeeEEEEeecCcccccc
Confidence 345 9999999999999 99999999999999999999841 2321110 00111235799999998888899
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-CCc----ccccccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL-GLD----VCADTMV 285 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~~t~v 285 (1425)
||.||+.|+..... +.+.. .+. .......+..|... ++. ...|+.|
T Consensus 98 tv~D~~~~g~~~~~---------~~~~~-------------~i~-------~~i~~q~~~~L~e~~~i~r~l~~~~d~rV 148 (427)
T 2qag_B 98 TIVSTVGFGDQINK---------EDSYK-------------PIV-------EFIDAQFEAYLQEELKIRRVLHTYHDSRI 148 (427)
T ss_dssp EEEEEECCCC-CCH---------HHHSH-------------HHH-------HHHHHHHHHHHHHC--CCCCCCCSCC--C
T ss_pred chhhhhhhhhcccc---------chhhh-------------HHH-------HHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 99999987632110 00000 000 01112233344443 443 1123221
Q ss_pred ----c--CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHH
Q 047682 286 ----G--DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQ 337 (1425)
Q Consensus 286 ----g--~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~ 337 (1425)
. ....++|+-.+ +.++++|..+++++++|||+..|.......+.+.+++
T Consensus 149 h~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 149 HVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp CEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 0 01113566665 7899999999999999999999999888888888876
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-11 Score=134.37 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=40.1
Q ss_pred cCCcEeEEecCCCCCChH-------H-----HHHHHHHHHHHHHhcCCEEEEEEecChhhHH------------------
Q 047682 309 GPALALFMDEISTGLDSS-------T-----TFQIVTSLRQIIHILNGTAVISLLQPAPETY------------------ 358 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~~-------t-----~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~------------------ 358 (1425)
.+|+++++|||++.+|+. + ..++++.|+++++..+.++++ ++|...+..
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~-~~h~~~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI-TNQVVAQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EC-------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeeeecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 345677777777766666555 566544432
Q ss_pred -hhcCeEEEEcCC
Q 047682 359 -DLFDDIILISEG 370 (1425)
Q Consensus 359 -~~~D~vilL~~G 370 (1425)
.++|.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 279999999865
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-11 Score=135.40 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=84.7
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCC--CCC---ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+-+++|++++|+||||||||||++.|++. ... +...|.+.+++... ....+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~---------------------~~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT---------------------FRPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------------CCHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC---------------------cCHHHHHH
Confidence 56899999999999999999999999982 211 11235566655321 01111111
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH-HHHHHHHh--hCCcEEEEeCCCCCCCH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR-l~ia~~L~--~~p~illLDEPTsgLD~ 1011 (1425)
....+. ... +++++.+.+ ....+..+... +.-+.+++ .+|+++++||||+.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 111111 111 112221110 01245554332 33334444 47999999999999997
Q ss_pred H-------H-----HHHHHHHHHHHHhC-CCEEEEEecCccHH------------------HHHhcCEEEEEeCC
Q 047682 1012 R-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 1055 (1425)
Q Consensus 1012 ~-------~-----~~~i~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~fD~v~~l~~G 1055 (1425)
. + ...+++.|++++++ |+|||+++|..... +...+|.+++|+++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 34566666666644 99999999965421 11168999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-13 Score=157.34 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=100.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
+|++++ +++|++++|+||||||||||+++|+|.++++ -+|+|.+.|.++. ...+..++||+|...-....+.+..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeecCCCHHHHHHH
Confidence 677776 7999999999999999999999999998763 1699988776654 3345678999993211111122333
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHH---HHHHhhh--------hhhhhHHHHHHHHHh---------
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF---MKALATE--------GQEASVVTDYVIKVL--------- 275 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~l~~l--------- 275 (1425)
|.-+.+.. + . .=.+.|.. |.+.+ .+++... ........+.++...
T Consensus 202 l~~~L~~~-p-d-~illdE~~------------d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~ 266 (372)
T 2ewv_A 202 LRAALRED-P-D-VIFVGEMR------------DLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVR 266 (372)
T ss_dssp HHHHTTSC-C-S-EEEESCCC------------SHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHH
T ss_pred HHHHhhhC-c-C-EEEECCCC------------CHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHH
Confidence 33322221 1 0 00000000 11111 1111000 000111222222211
Q ss_pred -CCcccccccccCcccccCChhhhhhHHHHHHHhcCCcE--eEEecCCCCCChH
Q 047682 276 -GLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA--LFMDEISTGLDSS 326 (1425)
Q Consensus 276 -gL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~i--llLDEptsgLD~~ 326 (1425)
-|....++.|+.+.++ +||| ||++++|+++.+|++ +++||.|+.||+.
T Consensus 267 ~~l~~~l~~vv~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 267 IVLSFILQGIISQRLLP-KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp HHHHHSCCEEEEEEEEE-CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhhhEEEEEEeEe-cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 1345567888876665 7888 889999999999999 9999999999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-12 Score=152.91 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=69.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC------C---ccceEEEEccCCCCC
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF------V---PQRTAAYISQHDVHI 207 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 207 (1425)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999887 89999987665331 1 135689999988778
Q ss_pred CCCCHHHHHHhhh
Q 047682 208 GEMTVRETLAFSA 220 (1425)
Q Consensus 208 ~~lTV~E~l~f~~ 220 (1425)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-11 Score=145.31 Aligned_cols=122 Identities=18% Similarity=0.099 Sum_probs=80.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEEC-CccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-PSLKLSGRVTYN-GHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666654 4899999999999999999999999998 87 9999987 765432 2346799999998888888998
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
|+ +. .+. ... +.....+++++.+|+....|... .++
T Consensus 280 e~---~l--~~l----------~~~------------------------e~~~~~~e~l~~~gl~~f~~~~~-----~~l 315 (358)
T 2rcn_A 280 EF---GL--WHL----------EPE------------------------QITQGFVEFHDYLGHCKYRDCKH-----DAD 315 (358)
T ss_dssp TC---CC--CCC----------CHH------------------------HHHHTSGGGGGGTTCSSSTTCCS-----SSC
T ss_pred Hh---hh--cCC----------CHH------------------------HHHHHHHHHHHHcCCchhcCCCc-----ccC
Confidence 83 21 000 000 01122345667788876666554 359
Q ss_pred ChhhhhhHHHHHHH
Q 047682 294 SGGQRKRVTTGEML 307 (1425)
Q Consensus 294 SGGqrqRvsia~al 307 (1425)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999864
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-13 Score=161.91 Aligned_cols=162 Identities=11% Similarity=0.070 Sum_probs=94.9
Q ss_pred eeceeEEEeC--CeEEEEEcCCCCChhhHHhhhcCCCCCceEE----EEEEEc----CccCC--cccccceEEEeecCCC
Q 047682 855 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNIKIS----GYPKK--QETFARISGYCEQNDI 922 (1425)
Q Consensus 855 L~~vs~~i~~--Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~Q~~~ 922 (1425)
.+.|++.|++ |++++|+||||||||||+++|+|...+ .. |++.++ |.+.. ...+ +.++|++|+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 4578899999 999999999999999999999997542 34 444442 11110 0000 11222222110
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh-hCCcEEE
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIF 1001 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~-~~p~ill 1001 (1425)
.+ ..|+.||+.+ ++ .+..+.. ...+|+|++||..+++++. .+|++++
T Consensus 235 ~~-~~t~~~nl~~-------------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DY-AVRHSHKIAF-------------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HH-HHHHCSSEEE-------------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HH-HHhccCCEEE-------------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 00 0011111100 00 0000110 1235677788888888775 5999999
Q ss_pred EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 1002 MDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 1002 LDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
||| |+ +++|...+..+.+.|+++.+ .|.+|++++|. + +....+|++.+++
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 999 65 68999999999999988764 38899999875 3 3455666665554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-13 Score=154.17 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCChhhHHhhhc---CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
++++++|+||||||||||+++|+ |... +..|++.++|.+... ...+.+++++|+..+.+..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8654 345777776654221 12233455677777788889999997643100
Q ss_pred CC-----CCCCHHHHHHHHHHHHH--HcC------------CccccccccCCCCCCcCCHHHHHHHHHHHHH-hhCCcEE
Q 047682 941 LP-----PDVDSETRRMFLEEIME--LVE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 1000 (1425)
Q Consensus 941 ~~-----~~~~~~~~~~~v~~~l~--~l~------------l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L-~~~p~il 1000 (1425)
.. ....... ..++.+.+ .++ +....+.. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0111111 11222221 112 11222222 335888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 047682 1001 FMD----EPTSGLDARAAAIVMRTVRNTVDT 1027 (1425)
Q Consensus 1001 lLD----EPTsgLD~~~~~~i~~~l~~~~~~ 1027 (1425)
+|| |||+|||..+...+.+.++++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999988654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-11 Score=141.78 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=93.0
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKIS-GYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
++++.. .+|++++|+||||||||||+|+|+|.... ...|+|.++ |.... ....+.+++++|+..++++.|++|+.
T Consensus 207 ~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~- 282 (358)
T 2rcn_A 207 KPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG- 282 (358)
T ss_dssp HHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC-
T ss_pred HHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-
Confidence 344443 37999999999999999999999996540 246888876 65432 23456789999998888888998841
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~ 1014 (1425)
+ ...+.++..+.+.++++.+++.+..+... .++| ||+||++||+++ ++..-.
T Consensus 283 ----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl---------------i~~~R~ 334 (358)
T 2rcn_A 283 ----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA---------------IAETRF 334 (358)
T ss_dssp ----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS---------------SCHHHH
T ss_pred ----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC---------------CCHHHH
Confidence 1 13455566667788899999988777663 4699 999999999864 344444
Q ss_pred HHHHHHHHHHH
Q 047682 1015 AIVMRTVRNTV 1025 (1425)
Q Consensus 1015 ~~i~~~l~~~~ 1025 (1425)
....++++++.
T Consensus 335 ~~y~~l~~e~~ 345 (358)
T 2rcn_A 335 ENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55555666654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-11 Score=141.01 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=84.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 224 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 224 (1425)
+++.+++|.||+|||||||.+.|++.+.+ .| . .++.+.+|+|++.+++ .++++++.++....+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 36789999999999999999999999865 23 1 0234666699887775 489999987631100
Q ss_pred CCCcchhhhHhhHHhhhcCCCCCC-ChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc----cccccccCcccccCChhhhh
Q 047682 225 VGSRYDMLVELSRREKDANIKPDP-DIDVFMKALATEGQEASVVTDYVIKVLGLDV----CADTMVGDEMLRGISGGQRK 299 (1425)
Q Consensus 225 ~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~~t~vg~~~~~~LSGGqrq 299 (1425)
.-.. .+ .|+. |.+ .....++.+.-.. .....+. .+...+||||+|
T Consensus 92 l~~~-------------~g-~p~a~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 LLQG-------------RG-LPGTHDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGD 141 (290)
T ss_dssp GGSS-------------SC-STTSBCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCE
T ss_pred hhhh-------------cc-CcchhHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccCCcccc
Confidence 0000 00 0111 111 1223444443220 0111122 233579999999
Q ss_pred hHHHH--HHHhcCCcEeEEecCCCCCChHH
Q 047682 300 RVTTG--EMLVGPALALFMDEISTGLDSST 327 (1425)
Q Consensus 300 Rvsia--~al~~~p~illLDEptsgLD~~t 327 (1425)
|+.+| +++ +|+|+|+||+++++|+..
T Consensus 142 R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccceEc--CCCEEEEeCccccCCccc
Confidence 99997 555 999999999999999864
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-13 Score=159.30 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=94.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC--------CCCCCcccEEEECCccCCCCCc------------------cceEEEE
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKL--------DPSLKLSGRVTYNGHNMDEFVP------------------QRTAAYI 200 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 200 (1425)
=++++|+|+||||||||||.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999988754321 1234455
Q ss_pred ---ccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHH-hhhhhhhhHHHHHHHHHhC
Q 047682 201 ---SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKAL-ATEGQEASVVTDYVIKVLG 276 (1425)
Q Consensus 201 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lg 276 (1425)
+|+....+..||.||..++... .+.+.. ..........++.++..++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-----------------------------~~~~~~~~~~~~~~~~~l~~~l~~vd 131 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-----------------------------PIIQTFFSHEVLCQRYLLDGVIALVD 131 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-----------------------------HHHHHHHHSHHHHHHEEEEEEEEEEE
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-----------------------------HHHHHHhcCccccCeEEECCEEEEEE
Confidence 4544444555666655443110 000000 0000000000111122233
Q ss_pred CcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 277 LDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 277 L~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
+.+..+.. ..+|||||||+..+++++.+|+++ ||| ..+.+.++++. . +++|+.++|...+
T Consensus 132 ~~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~-~~~ii~~sh~~~~ 191 (318)
T 1nij_A 132 AVHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--A-RAPVYTVTHGDID 191 (318)
T ss_dssp TTTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--S-SSCEEECCSSCCC
T ss_pred HHHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--C-CCeEEEecccCCC
Confidence 33322222 148999999998888888888877 888 66777777763 2 3444445565444
Q ss_pred HHhhcC
Q 047682 357 TYDLFD 362 (1425)
Q Consensus 357 ~~~~~D 362 (1425)
...++|
T Consensus 192 ~~~l~~ 197 (318)
T 1nij_A 192 LGLLFN 197 (318)
T ss_dssp GGGGSC
T ss_pred HHHHhC
Confidence 444443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=140.79 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=69.2
Q ss_pred CcCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 047682 977 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l 1052 (1425)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|+|++ +..+.+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 58999999999999999999999999999865688999999996 467889999999
Q ss_pred eC
Q 047682 1053 KR 1054 (1425)
Q Consensus 1053 ~~ 1054 (1425)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-11 Score=141.65 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHH
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---------QRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.+++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3689999999999999999999999999887 8999999988654321 123569999988899999999
Q ss_pred HHHhhh
Q 047682 215 TLAFSA 220 (1425)
Q Consensus 215 ~l~f~~ 220 (1425)
++.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-10 Score=120.78 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.2
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCcc
Q 047682 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 1039 (1425)
Q Consensus 994 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~~ 1039 (1425)
+.+|++|++|||++ +|...+..+.+.++++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 46799999999998 5555588899999988877888 889999653
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-12 Score=150.43 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=97.2
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 378999999999999999999999999999999642 23333321 12234566665541 1111111110
Q ss_pred HHhhccCCCCCCHHHHH--HHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 935 YSAWLRLPPDVDSETRR--MFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+...............+ +.++.++..+++. ......+|+|++||+.+|++|+.+|.||++ |++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111100 0011122222222 112356999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEEecCccHHHHHhcCEE
Q 047682 1013 AAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 1013 ~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
.+ ..++.+++. .+.|.+++.+|..-...+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 77 444444444 4457776655543233466666554
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-11 Score=146.90 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=100.2
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-------cc--ccceEEEeecCCCCCCC
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-------ET--FARISGYCEQNDIHSPN 926 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~~~~~~~ 926 (1425)
+++|+.+++|++++|+|+||||||||+++|+|.... ..|+|.++|.+... .. .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 578999999999999999999999999999996432 24788887665422 11 24568999999888888
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh-hCC-cEEEEeC
Q 047682 927 VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANP-SIIFMDE 1004 (1425)
Q Consensus 927 lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~-~~p-~illLDE 1004 (1425)
.|+++++.+...-. .+. -+++..|+.+... .+-..-+|++.+++++. ..| .+||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 99999998764211 000 0112222211111 12223457888888664 457 3565555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 047682 1005 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1037 (1425)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1037 (1425)
||+|.|.. +.++.+.+ .|.|.|++||-
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 89886554 22333332 38899999993
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-11 Score=146.71 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=101.6
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHH
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETL 216 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 216 (1425)
-+++|+++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..++++.+++. ..+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999843 23444443322 34666766541 111222211
Q ss_pred Hh---hhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 217 AF---SARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 217 ~f---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
-+ +....+.+. .+.+. ..+++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 00000 00011122223332 2334569
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
|+||+||+.+|++|...|.++++ |++|...+ ..++.+++..+..+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999877 55555555544444566655555555566665544
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-11 Score=128.69 Aligned_cols=78 Identities=23% Similarity=0.115 Sum_probs=64.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
+.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.+.......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999965 3 3689999998764321111 2789988788 899999
Q ss_pred HHHH
Q 047682 932 SLLY 935 (1425)
Q Consensus 932 ~l~~ 935 (1425)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-12 Score=136.34 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCCC-ceEEEEEEEcCccCC------ccccc-ceEE----EeecCCCCCCCCCHHHHH
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKISGYPKK------QETFA-RISG----YCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~~~~~~~lTv~E~l 933 (1425)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 58999999999999999999996432 233699999998732 12333 3456 788876554 0
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEE-------EEeCC
Q 047682 934 LYSAWLRLPPDVDSETRRMFLEEIMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1005 (1425)
Q Consensus 934 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~il-------lLDEP 1005 (1425)
+. .+.+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 75 ------~~---~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RR---VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EE---CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ec---CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 10 0111 11124555554 43 24666653 59999999999999999999873 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 047682 1006 TSG---LDARAAAIVMRTVRNTVDTGR 1029 (1425)
Q Consensus 1006 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1029 (1425)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445666777766555543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.8e-12 Score=149.51 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=109.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-------CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-------VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 206 (1425)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.+.... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999999887 89999998876432 124678999998776
Q ss_pred CCCC---------C---HHHHHHhh-h---h-----hcCCCCcchhhhHhhHHhhhcCC---CCCC-ChHHHHHHHhhhh
Q 047682 207 IGEM---------T---VRETLAFS-A---R-----CQGVGSRYDMLVELSRREKDANI---KPDP-DIDVFMKALATEG 261 (1425)
Q Consensus 207 ~~~l---------T---V~E~l~f~-~---~-----~~~~~~~~~~~~~~~~~e~~~~~---~~~~-~~~~~~~~~~~~~ 261 (1425)
+... | ++|.+... . . .-|.......+ +..++. .-++ ..+.. +.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v------~~~~d~vl~v~d~~~~~~~-~~----- 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV------ADLTDFFLVLMLPGAGDEL-QG----- 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH------HTTSSEEEEEECSCC------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH------HhhCCEEEEEEcCCCcccH-HH-----
Confidence 6532 2 33333110 0 0 00111100000 001100 0000 00000 00
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhc------CCcEeEEecCCCCCChHHHHHHHHHH
Q 047682 262 QEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG------PALALFMDEISTGLDSSTTFQIVTSL 335 (1425)
Q Consensus 262 ~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~------~p~illLDEptsgLD~~t~~~i~~~L 335 (1425)
...........+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|......+++.|
T Consensus 187 --i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 187 --IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp --CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred --HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 00001111112222 112210 123589999999999999887 578876 9999999999999988
Q ss_pred HHHHH
Q 047682 336 RQIIH 340 (1425)
Q Consensus 336 ~~~~~ 340 (1425)
.+...
T Consensus 256 ~~~~~ 260 (337)
T 2qm8_A 256 EDHRS 260 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-12 Score=156.28 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=66.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
.+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|+++|.+--.......++++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999988 8999999865222222345777777654334568888
Q ss_pred HHHhhhh
Q 047682 215 TLAFSAR 221 (1425)
Q Consensus 215 ~l~f~~~ 221 (1425)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8876655
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-11 Score=148.46 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=90.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEc-----
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYIS----- 201 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~----- 201 (1425)
..+|+++ + .++|++++|+|||||||||||++|+|.+.++ +|+|.+.|.++.... ..+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 4899999999999999999999999999887 899999998874211 112344443
Q ss_pred ----cCCCC--CCC----CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHH
Q 047682 202 ----QHDVH--IGE----MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYV 271 (1425)
Q Consensus 202 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1425)
|++.. +++ .|+++++.++..-... +. .+ .. .+ .....+ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv---~~---tl---------h~-~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLV---MS---TL---------HT-NT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEE---EE---EE---------CC-SS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCc---cc---cc---------ch-hh--------------HHHHHH-H
Confidence 76544 344 5788888765321100 00 00 00 00 011122 3
Q ss_pred HHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeE
Q 047682 272 IKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALF 315 (1425)
Q Consensus 272 l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~ill 315 (1425)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667876532 224699999999 9999999999875
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-10 Score=133.78 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=78.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---CCccCCCCCc--c-ceEEEEccCCCCC-----CCCCHH
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY---NGHNMDEFVP--Q-RTAAYISQHDVHI-----GEMTVR 213 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 213 (1425)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+.... + +.++|++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 98887 999999 8987754321 1 2589999987543 68899
Q ss_pred HHH--HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-cccccccCccc
Q 047682 214 ETL--AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV-CADTMVGDEML 290 (1425)
Q Consensus 214 E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~ 290 (1425)
|++ .|+. .. ... |+.. . ..+. .+....++++++.+||+. .++.. .
T Consensus 238 e~l~~~f~~-~~-------~~~--c~~~-~--~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~-----~ 285 (302)
T 2yv5_A 238 REVRNYFRE-FL-------RYQ--CKYP-D--CTHT--------------NEPGCAVKEAVKNGEISCERYKSY-----L 285 (302)
T ss_dssp GGGGGGCGG-GH-------HHH--HHST-T--CCSS--------------SCTTCHHHHHHHTTSSCHHHHHHH-----H
T ss_pred HHHHHHHHH-HH-------Hcc--CCCC-C--CCCC--------------CCCCCHHHHHHHcCCCCHHHHHHH-----H
Confidence 888 4431 00 000 1100 0 0000 011224677888899975 55544 3
Q ss_pred ccCChhhhhhHHHHH
Q 047682 291 RGISGGQRKRVTTGE 305 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~ 305 (1425)
+.|||.++|++.|||
T Consensus 286 ~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 469999999999986
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=130.06 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=73.6
Q ss_pred HHHHHHHHhCCccc-------ccccccC----cccccCChhhhhhH------HHHHHHhcC-CcEeEEecCCCCCChHHH
Q 047682 267 VTDYVIKVLGLDVC-------ADTMVGD----EMLRGISGGQRKRV------TTGEMLVGP-ALALFMDEISTGLDSSTT 328 (1425)
Q Consensus 267 ~~~~~l~~lgL~~~-------~~t~vg~----~~~~~LSGGqrqRv------sia~al~~~-p~illLDEptsgLD~~t~ 328 (1425)
.++..++.+++++. .+..+.+ ..+..+|||||||+ ++|+++.++ |++++|||||+|||+.++
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556777777651 1222222 34567999999988 567899999 999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 329 FQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 329 ~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
..+.+.|+++. .++++++ ++|+. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~--~~~~vi~-~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVK--SIPQMII-ITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCC--SCSEEEE-EESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhc--cCCeEEE-EEChH-HHHhhCCEEEEEE
Confidence 99999998753 2346554 55554 5789999999997
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-12 Score=150.58 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=102.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TFARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~~ 924 (1425)
+.+|+++|+.+++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3589999999999999999999999999999999985431 246777777654221 2345689999988776
Q ss_pred CCC------------CHHHHHHHHh-------------------hccCCC-------CCC-HHHHHHHHHHHHHHcCCc-
Q 047682 925 PNV------------TVYESLLYSA-------------------WLRLPP-------DVD-SETRRMFLEEIMELVELN- 964 (1425)
Q Consensus 925 ~~l------------Tv~E~l~~~~-------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~l~- 964 (1425)
+.. +++|.+...- .+.... +.. ..........+.+...+-
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 532 2333331100 000000 000 000000000111221111
Q ss_pred -cccccccCCCCCCcCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 047682 965 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025 (1425)
Q Consensus 965 -~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1025 (1425)
+..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.
T Consensus 200 lNK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 200 VNKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EEchhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 111210 123589999999999999987 688887 99999999999999998765
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-10 Score=120.66 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=42.7
Q ss_pred HhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 047682 993 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040 (1425)
Q Consensus 993 L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 1040 (1425)
.+.+|++|+||||++ ++|+.....+.+++++..+.|+++|+|||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 355999999999995 999999999999999887789999999998753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-11 Score=137.02 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=83.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhh----
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW---- 938 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~---- 938 (1425)
+++.++||.|+||||||||.+.|++.... . |. . ++.+.+|+||+.+++. ++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~------g~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---K------YG-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---H------HG-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---c------CC-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 37889999999999999999999985431 0 10 0 2345666999988764 88899887521
Q ss_pred cc---CCCCCCHHHHHHHHHHHHHHcCCc--cc--cccccCCCCCCcCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCC
Q 047682 939 LR---LPPDVDSETRRMFLEEIMELVELN--PL--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 939 lr---~~~~~~~~~~~~~v~~~l~~l~l~--~~--~~~~~g~~~~~~lSgGqrqRl~ia--~~L~~~p~illLDEPTsgL 1009 (1425)
+. .|...+. +...+.++.+... .. ....+. .....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 1222222 2344555555332 00 000011 11246999999999997 555 99999999999999
Q ss_pred CHHH
Q 047682 1010 DARA 1013 (1425)
Q Consensus 1010 D~~~ 1013 (1425)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9853
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-11 Score=140.98 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cccc--eEEEeecCCCCCCCCCHHHH
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TFAR--ISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~--~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
.++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++ .+.|++|+..+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 368999999999999999999999995432 257888888765321 1122 34599999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+.++..... +. -+++..|+.+..+.. .++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 976532110 00 011112222211111 122234889998888888888555 4
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCc
Q 047682 1013 AAAIVMRTVRNTVD-TGRTVVCTIHQP 1038 (1425)
Q Consensus 1013 ~~~~i~~~l~~~~~-~g~tvi~~~H~~ 1038 (1425)
..+++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 344555566553 489999999954
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-10 Score=124.19 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=36.6
Q ss_pred hcCCcEeEEecCCC-CCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 308 VGPALALFMDEIST-GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 308 ~~~p~illLDEpts-gLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
+.+|++|+||||++ ++|......+.+.+..... .++++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999888888877643 456777765555444
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-13 Score=144.88 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHH-HHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 303 TGE-MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 303 ia~-al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7888999999999999999999999999988775532 1122 1 2 67899988764
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-10 Score=132.90 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=86.6
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhh--cCCCC---CceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+-|++|++++|+||||||||||++.| .+..+ ++.-.+.+++++... ........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~---------------------~~~~rl~~ 231 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT---------------------FRPVRLVS 231 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------------CCHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc---------------------cCHHHHHH
Confidence 56899999999999999999999955 44332 111234566665321 01100000
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH-HHHHHHHHHHHHh--hCCcEEEEeCCCCCCCH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg-GqrqRl~ia~~L~--~~p~illLDEPTsgLD~ 1011 (1425)
....+. ... +++++.+-+ . +..+. .+.+.+.-+.+++ .+|+++++||||+.+|.
T Consensus 232 ~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 232 IAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 111111 111 112221111 0 11222 2334444444443 46999999999999996
Q ss_pred HHH------------HHHHHHHHHHHhC-CCEEEEEecCcc------------------HHHHHhcCEEEEEeCC
Q 047682 1012 RAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1012 ~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~fD~v~~l~~G 1055 (1425)
... ..+++.|++++++ |.|||+++|..+ ..+...+|.++.|+++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 433 6678888888765 999999999821 1234567999999864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-12 Score=155.71 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=104.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..+++++++.+++|+.++|+|||||||||||++|+|..++ ..|.|.++|.+.-...-...+++..|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3578999999999999999999999999999999997653 36888998864211111234556655443222345555
Q ss_pred HHHHHhhccCCC------CCCHHHHHHH------------------HHHHHHHcCCcc--ccccccC-C----CCCCcCC
Q 047682 932 SLLYSAWLRLPP------DVDSETRRMF------------------LEEIMELVELNP--LRQSLVG-L----PGVSGLS 980 (1425)
Q Consensus 932 ~l~~~~~lr~~~------~~~~~~~~~~------------------v~~~l~~l~l~~--~~~~~~g-~----~~~~~lS 980 (1425)
.+.-. +|+.+ .+...+.... ++++++.+...+ ....... . .....+|
T Consensus 325 ~l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 54322 22211 1111111111 122333322211 0000000 0 0023479
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCccHHHHHhc
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1046 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~f 1046 (1425)
+|||||.+++. + | |+|||+.+...+++.|.++.+.|+|+++ ++|+.+ ++...+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999887752 1 7 9999998777777777666556888875 888765 454444
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-11 Score=130.35 Aligned_cols=30 Identities=40% Similarity=0.488 Sum_probs=28.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-10 Score=134.62 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=79.7
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCHH
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PNVTVY 930 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~lTv~ 930 (1425)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3469999999999999999999999 654 34688888 88765321 112 2479999998653 68899
Q ss_pred HHH--HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHHHHHHHHHH
Q 047682 931 ESL--LYSA----WLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 992 (1425)
Q Consensus 931 E~l--~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqrqRl~ia~~ 992 (1425)
|++ .|.. .++........+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4431 0111111111222345889999999986 555543 4699999999999874
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-09 Score=127.18 Aligned_cols=164 Identities=15% Similarity=0.051 Sum_probs=84.7
Q ss_pred EEEEcCCCCChhhHHhhhcCC-CCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR-KTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDV 945 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~-~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~ 945 (1425)
+.|.||||+|||||+++|++. ... ..|.+.++|.+... ....+.+++++|.+.+..... + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 899999999999999999983 322 24777777765321 112345678888664321110 0 0001
Q ss_pred CHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 047682 946 DSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025 (1425)
Q Consensus 946 ~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1025 (1425)
.... +.+.++.+......+... .+|| +..+|+++++|||++ ||..+...+.+.+++..
T Consensus 105 ~~~~----~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRIV----IQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHHH----HHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chHH----HHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 1111 233333321111011110 3566 788999999999999 99999999999998764
Q ss_pred hCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhh
Q 047682 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEA 1077 (1425)
Q Consensus 1026 ~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~ 1077 (1425)
.++++|+++|+|+. +... +.++ ...+.+.|+.. .++.++...
T Consensus 163 -~~~~~Il~t~~~~~-l~~~-----l~sR-~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP-IIAP-----IKSQ-CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCS-SCHH-----HHTT-SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHH-HHHH-----HHhh-ceEEecCCcCH--HHHHHHHHH
Confidence 46899999999863 2111 1123 24566677653 455555554
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-08 Score=120.15 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=44.4
Q ss_pred cCCcEeEEecCCCCCChHHH------------HHHHHHHHHHHHhcCCEEEEEEecCh-------------------hhH
Q 047682 309 GPALALFMDEISTGLDSSTT------------FQIVTSLRQIIHILNGTAVISLLQPA-------------------PET 357 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~~t~------------~~i~~~L~~~~~~~~~t~ii~~~q~~-------------------~~~ 357 (1425)
.+|+++++|||++.+|.... .++++.|+++++..+.|+|++ +|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv-~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT-NQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-EeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 678888999988777676665 4441 224
Q ss_pred HhhcCeEEEEcCCe
Q 047682 358 YDLFDDIILISEGQ 371 (1425)
Q Consensus 358 ~~~~D~vilL~~G~ 371 (1425)
.+.+|.++.|+.|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999998653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-11 Score=140.52 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=92.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 209 (1425)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998763 789999987644321 23466666652 34445
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+++.|++......++ ..+ .+ .+.... +..
T Consensus 106 i~~~Deid~~~~~r~--------------~~~--------------------------~~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRE--------------------------TG------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccC--------------CCc--------------------------ch------HHHHHH-----HHH
Confidence 555555543211000 000 00 000001 122
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCC------------CCChHHHHHHHHH
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEIST------------GLDSSTTFQIVTS 334 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEpts------------gLD~~t~~~i~~~ 334 (1425)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 3459999999999999999999985 98864 2355566666543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=109.90 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 8999999999999999999999998865
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.9e-12 Score=148.93 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=113.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcC------------CCCCCCcccEEEECCccCCC----CCccceE---EEEccC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGK------------LDPSLKLSGRVTYNGHNMDE----FVPQRTA---AYISQH 203 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~------------~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 203 (1425)
.+++|..++|+|+||||||||+|+|+|. .+|+ +|.|.++|..++. ..+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999999993 3454 8999999854321 1223333 467777
Q ss_pred CCCCCCCCHHHHH--HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc
Q 047682 204 DVHIGEMTVRETL--AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCA 281 (1425)
Q Consensus 204 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 281 (1425)
+-+....+..|++ .|-+.++.. + .++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~----d---------------------------------------~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV----D---------------------------------------AIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC----S---------------------------------------EEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH----H---------------------------------------HHHHHHhcc---
Confidence 7777777766555 332222110 0 000111111
Q ss_pred cccccCcccccCChhhhhhHHHHHHHhcCC--cEeEEecCCCCCChHHHHHHHHHHHHH-HHhcCCEEEEEEecChhhHH
Q 047682 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPA--LALFMDEISTGLDSSTTFQIVTSLRQI-IHILNGTAVISLLQPAPETY 358 (1425)
Q Consensus 282 ~t~vg~~~~~~LSGGqrqRvsia~al~~~p--~illLDEptsgLD~~t~~~i~~~L~~~-~~~~~~t~ii~~~q~~~~~~ 358 (1425)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. ++++++ .|...++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHH
Confidence 112222366653 88 999999999999999998888888876 33 233333 77888899
Q ss_pred hhcCeEE-EEcCC-eEEEecChh
Q 047682 359 DLFDDII-LISEG-QIVFQGPRE 379 (1425)
Q Consensus 359 ~~~D~vi-lL~~G-~iv~~G~~~ 379 (1425)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 888777643
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-11 Score=148.74 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=88.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEee------
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-------ETFARISGYCE------ 918 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------ 918 (1425)
..+|+++ + .++|++++|+|||||||||||++|+|.... ..|+|.+.+.+... ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3478888 4 489999999999999999999999995432 24777777766421 12223345544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 919 ---QNDIH--SPN----VTVYESLLYSAWLRL----PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 919 ---Q~~~~--~~~----lTv~E~l~~~~~lr~----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
|++.. .+. .|+.+++.++..-.. ....+.. +.++ .+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~~i~-rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---GAVT-RLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---HHHH-HHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---HHHH-HHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 77654 233 689999887542110 0011111 2223 45677887643 2 3469999999
Q ss_pred HHHHHHHHhhCCcEEE
Q 047682 986 RLTIAVELVANPSIIF 1001 (1425)
Q Consensus 986 Rl~ia~~L~~~p~ill 1001 (1425)
| ||++|+.+|++..
T Consensus 301 R--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPY 314 (418)
T ss_dssp E--EEEEECTTTCEEE
T ss_pred H--hhhhhcCCCCccC
Confidence 9 9999999999875
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-11 Score=139.51 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=96.4
Q ss_pred ceeeeceEEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCccCCCC---CccceEEEEcc
Q 047682 134 FTILKDVNGIVKPS-------RLTLLLGPPASGKTTLLLALAGKLDPSL-KLSGRVTYNGHNMDEF---VPQRTAAYISQ 202 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~Q 202 (1425)
..+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35788888888776 8899999999999999999999873211 1266666655544221 11356999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
.+.+.+ ++.|++....+..+. +.+. ... .....++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~----~i~~--~~~------------------------~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQI----DIMI--GKG------------------------PSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhccc----ceee--ccC------------------------cccccccccCCCeEEEE-ec
Confidence 766554 788888543221100 0000 000 00011222334445543 44
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
+..+ .||+|+|+|+.++ .+||+.+..++.+.|++.++..+
T Consensus 158 ~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 158 TRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp SCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 4443 5999999998554 78999999999999998876543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.7e-11 Score=129.99 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=77.8
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCC-ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
.++|++++|+||||||||||+++|+|...+ |...|.|.++|. ++.. +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~-------------------~~~~-~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF-------------------HLDN-RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG-------------------BCCH-HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC-------------------cCCH-HHHHHhcccccCC
Confidence 469999999999999999999999996431 112344444443 3221 1111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1019 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia-~~L~~~p~illLDEPTsgLD~~~~~~i~~ 1019 (1425)
.+...+... ..+.++.+...+..+...... ..++|+||+||+++| +.++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 111112121 122232221111111111211 235899999999998 78888888888888841 1
Q ss_pred HHHHHHhCCCEEEEEecCccHHHHHhcCE
Q 047682 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 1020 ~l~~~~~~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
.+++. --.+|++.+.....+.....|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 12222 235677777665434455555
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-10 Score=132.00 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=59.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEE---CCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTY---NGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 219 (1425)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ..++.++++ |+..+.+.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999987 77 899999 8876432 123457788 777777889999999886
Q ss_pred hhh
Q 047682 220 ARC 222 (1425)
Q Consensus 220 ~~~ 222 (1425)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-09 Score=125.70 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=50.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---CCccCCCCCc---cceEEEEccCCC-----------
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY---NGHNMDEFVP---QRTAAYISQHDV----------- 205 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 205 (1425)
.+.+|++++|+||||||||||||+|+|+..|+ +|+|.+ +|++++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999998 999999 8988764332 135899999864
Q ss_pred -----CCCCCCHHHHHHhh
Q 047682 206 -----HIGEMTVRETLAFS 219 (1425)
Q Consensus 206 -----~~~~lTV~E~l~f~ 219 (1425)
+++++|+ ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788888 888775
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.6e-09 Score=122.56 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCC
Q 047682 150 TLLLGPPASGKTTLLLALAG-KLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 227 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 227 (1425)
++|.||||+|||||+++|+| ...++ .|++.++|.+..... .+..++|++|.+.+....+ + .+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~-- 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGN-- 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCC--
Confidence 89999999999999999999 56776 899999987664322 1356778888653211100 0 000
Q ss_pred cchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHH
Q 047682 228 RYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307 (1425)
Q Consensus 228 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al 307 (1425)
.+ ...+...++.+......+..+ .+|| +
T Consensus 104 --------------------~~---------------~~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 104 --------------------ND---------------RIVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp --------------------CC---------------HHHHHHHHHHHTTTTC---------------------------
T ss_pred --------------------cc---------------hHHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 00 000111222211110001111 3566 7
Q ss_pred hcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 308 ~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
.++|+++++|||++ ||..+...+.+.+++.. .++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 88999999999999 99999999998888752 3455555555543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-11 Score=140.90 Aligned_cols=171 Identities=10% Similarity=0.064 Sum_probs=114.9
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC----------CCceEEEEEEEcCccCCc----ccccce---EEEeecCCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNIKISGYPKKQ----ETFARI---SGYCEQNDIH 923 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~Q~~~~ 923 (1425)
.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45789999999999999999999999932 112457999998843210 011122 2467777777
Q ss_pred CCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCC--cE
Q 047682 924 SPNVTVYESL--LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 999 (1425)
Q Consensus 924 ~~~lTv~E~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p--~i 999 (1425)
.+..+..|.+ .|.+.++.. +.++..++..+ ...+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 7777766655 443333311 11111111111 11123355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCccHHHHHhcCEEE-EEeCCcEEEEECCCC
Q 047682 1000 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1000 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~fD~v~-~l~~Gg~~~y~G~~~ 1065 (1425)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.||++. +|.+|.+.++.|...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999988 66678865 99875 6888999999 888641667777764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-09 Score=121.94 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=66.8
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCc-ccccce-EEEeecCCCCCC----CCCHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQ-ETFARI-SGYCEQNDIHSP----NVTVY 930 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~-~~~~~~-~gyv~Q~~~~~~----~lTv~ 930 (1425)
+.+.+|++++|+||||||||||+|+|+|... ...|+|.+ +|..... ....+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999654 34788888 7765432 112222 699999987765 6899
Q ss_pred HHHH--HH------hhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 931 ESLL--YS------AWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 931 E~l~--~~------~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
|++. |. ..++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 32 11222211111122345789999999976443221 246677765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.5e-09 Score=119.53 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---CCccCCCCCcc-ce-EEEEccCCCCCC----CCCH
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY---NGHNMDEFVPQ-RT-AAYISQHDVHIG----EMTV 212 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 212 (1425)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+..... +. .+|+.|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999999887 999998 88766543211 22 799999876654 6899
Q ss_pred HHHHH
Q 047682 213 RETLA 217 (1425)
Q Consensus 213 ~E~l~ 217 (1425)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8884
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-10 Score=132.80 Aligned_cols=149 Identities=16% Similarity=0.073 Sum_probs=92.1
Q ss_pred eeeeceeEEEeCC-------eEEEEEcCCCCChhhHHhhhcCCCCC--ceEEEEEEEcCccCCc---ccccceEEEeecC
Q 047682 853 VLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNIKISGYPKKQ---ETFARISGYCEQN 920 (1425)
Q Consensus 853 ~iL~~vs~~i~~G-------e~~al~G~sGaGKTTLl~~l~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~ 920 (1425)
.+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4777888888776 88999999999999999999985421 1234544444433211 1123568999998
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 047682 921 DIHSPNVTVYESLLYSAWLRLPPDV--DSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 998 (1425)
Q Consensus 921 ~~~~~~lTv~E~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ 998 (1425)
+.+.+ ++.|++........ .+. ......+.++..++.+++.. +++. ...||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE--------
T ss_pred hhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce--------
Confidence 87765 78888854332111 010 01111223444444455543 3333 246999999998655
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 047682 999 IIFMDEPTSGLDARAAAIVMRTVRNTVD 1026 (1425)
Q Consensus 999 illLDEPTsgLD~~~~~~i~~~l~~~~~ 1026 (1425)
.+||+.+...+.++|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 78889899999999998764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-11 Score=136.99 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=85.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQND-IHSPNV 927 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~l 927 (1425)
..+++++++.+++| ++|+||||+|||||+++|+|.... |.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45889999999999 999999999999999999996542 6788998765321 1233456777763 445666
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
++.|++...+..|. ... .+ .+....+.. ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DRE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CCc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 000 00 011222222 2369999999999999999999986 88864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=7.8e-12 Score=135.74 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 989 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 989 ia~-~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+++ +++.+|++++|||+|+++|..+.+.|.+.|++..+. +...|.+ ..||++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999998877542 2335632 4689998876
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-08 Score=123.33 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=49.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 191 (1425)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 3579999999999 999999999999999999999999998 99999999887543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-08 Score=112.49 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 047682 140 VNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 140 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 219 (1425)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r------~-------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR------A-------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC------H-------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc------H-------------HHHHHH---
Confidence 44556789999999999999999999999998765 6777765532110 0 001111
Q ss_pred hhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhh
Q 047682 220 ARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRK 299 (1425)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 299 (1425)
...++.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233455542 1 237899999
Q ss_pred hH---HHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHH
Q 047682 300 RV---TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 300 Rv---sia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~ 340 (1425)
++ ++++++..+++++++|||.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999963 4555666766766544
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-07 Score=103.21 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=43.8
Q ss_pred cCCcEeEEecCCCCC--ChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh--------HHhhcCeEEEEcC
Q 047682 309 GPALALFMDEISTGL--DSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE--------TYDLFDDIILISE 369 (1425)
Q Consensus 309 ~~p~illLDEptsgL--D~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~--------~~~~~D~vilL~~ 369 (1425)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655667777777777766666666 4554443 4678899999964
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-07 Score=104.65 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=44.0
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCccHH-------HHHhcCEEEEEeC
Q 047682 995 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1054 (1425)
Q Consensus 995 ~~p~illLDEPTsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~fD~v~~l~~ 1054 (1425)
.+|+++++|||++.+ |......++..+.+++ +.|+|||+++|..... +.+.+|.++.|++
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 5544455555555554 5689999999986531 3567899999975
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=114.10 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=106.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..|+++++-+++|+++.|.|++|+|||||+..+++..... .| .+.+-+.+ ++..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E----------------------~s~~~ 246 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE----------------------MSAQQ 246 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS----------------------SCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC----------------------CCHHH
Confidence 4577888889999999999999999999999988742100 01 12222111 12111
Q ss_pred HHHH--Hh-------hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEE
Q 047682 932 SLLY--SA-------WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSII 1000 (1425)
Q Consensus 932 ~l~~--~~-------~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~il 1000 (1425)
...- +. .++. .....++ ...+.+.++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++
T Consensus 247 l~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~li 317 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMI 317 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEE
T ss_pred HHHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEE
Confidence 1100 00 0111 1223322 23345555555443322111 2368999987 5667776 689999
Q ss_pred EEeCCCCCCCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--ccH-------HHHHhcCEEEEEe
Q 047682 1001 FMDEPTSGLDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMK 1053 (1425)
Q Consensus 1001 lLDEPTsgLD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~fD~v~~l~ 1053 (1425)
++|+++...+. .....+.+.|+.++++ |++||+++| + |.. .+...+|.|++|.
T Consensus 318 vID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~ 397 (454)
T 2r6a_A 318 VIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLY 397 (454)
T ss_dssp EEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEE
T ss_pred EEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEe
Confidence 99999987742 3346777888888755 999999999 2 431 3566799999998
Q ss_pred CCc
Q 047682 1054 RGG 1056 (1425)
Q Consensus 1054 ~Gg 1056 (1425)
++.
T Consensus 398 r~~ 400 (454)
T 2r6a_A 398 RDD 400 (454)
T ss_dssp ETT
T ss_pred ccc
Confidence 754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-09 Score=125.76 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=64.7
Q ss_pred eeeeceeEEE-------------------eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCcccc
Q 047682 853 VLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQETF 910 (1425)
Q Consensus 853 ~iL~~vs~~i-------------------~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~~~ 910 (1425)
++++++|+.+ ++|+++||+||||||||||+++|+|.....+..|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3677777776 89999999999999999999999995320012578888 88765332 2
Q ss_pred cceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 911 ~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
++.+|++ |+..+.+.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3446788 7777778899999998766554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-08 Score=129.06 Aligned_cols=159 Identities=20% Similarity=0.233 Sum_probs=98.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCC--------
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHD-------- 204 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-------- 204 (1425)
...+++++++.+++|+.++|+||||+|||||+++|+|.+.+. .-|.+.+++.+.+... ..++|++|..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHH
Confidence 345789999999999999999999999999999999999875 2388999888776543 4688988742
Q ss_pred --------------CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHH
Q 047682 205 --------------VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDY 270 (1425)
Q Consensus 205 --------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1425)
+.+..+++.+|+.... +.. .+.+... .. . ..
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~--------------------~~~~~v~-------~~----~---~~ 166 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGR--------------------TKAPFID-------AT----G---AH 166 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECC-TTC--------------------SSCCEEE-------CT----T---CC
T ss_pred HHhhccchhhhhhcccccccccccceeecc-ccC--------------------CCCCEEE-------cC----C---CC
Confidence 1111222222211100 000 0000000 00 0 00
Q ss_pred HHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHH
Q 047682 271 VIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLR 336 (1425)
Q Consensus 271 ~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~ 336 (1425)
.-+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|+
T Consensus 167 ~~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 167 AGALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp HHHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred HHhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 111223211111 1123699999999999999999999999999998 88887666666654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=107.96 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=86.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 224 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 224 (1425)
++|++++++|||||||||+++.|++.+.+. +| +++.++.++.. ..+..|.+...++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~-- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAEL-- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHHh--
Confidence 479999999999999999999999998754 45 24667776432 34556665542211
Q ss_pred CCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHH
Q 047682 225 VGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304 (1425)
Q Consensus 225 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia 304 (1425)
+|++.. . ..+ ++.-+.+++
T Consensus 160 --------------------------------------------------~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 160 --------------------------------------------------LQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp --------------------------------------------------TTCCCC----B------CSS-HHHHHHHHH
T ss_pred --------------------------------------------------cCCCeE----e------cCC-HHHHHHHHH
Confidence 122110 0 011 222355555
Q ss_pred HHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHh--cCCEEEEE-EecChhhHHhhcCeEEEEcCCeEEE
Q 047682 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI--LNGTAVIS-LLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 305 ~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~--~~~t~ii~-~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
+ +.+++++|+| |+|+|+.....+.+. .++... ...++++. .+|...++.+.+|++..+..|.++.
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el-~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDEL-KETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHH-HHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHH-HHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 4 4899999999 999998776544433 333210 11223332 3566667777777766666677765
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-08 Score=118.59 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=63.5
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCcc--cc-cceEEEeecCCC-------------
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQE--TF-ARISGYCEQNDI------------- 922 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~-~~~~gyv~Q~~~------------- 922 (1425)
+.+|++++|+||||||||||||+|+|... +..|+|.+ +|.+.... .+ .+.+||++|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 45799999999999999999999999765 34799998 78765321 11 134799999874
Q ss_pred ---CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 047682 923 ---HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSL 970 (1425)
Q Consensus 923 ---~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~ 970 (1425)
++|.+|+ ||+.|.. ++. ..+.+..+.++++.++|. +..+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788899 8887752 111 112234578999999995 555544
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-07 Score=107.81 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCccH-----
Q 047682 985 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1040 (1425)
Q Consensus 985 qRl~ia~~L~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1040 (1425)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||++.|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555554 3459999999996431
Q ss_pred ----------HHHHhcCEEEEEeCCcEEEEECC
Q 047682 1041 ----------DIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 1041 ----------~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
.+...+|.++.+.++ +++-.|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~-~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI-ETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE-EEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEe-eeeecCc
Confidence 144578988888863 4444444
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.9e-08 Score=111.88 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=72.8
Q ss_pred eeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHh
Q 047682 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSA 937 (1425)
Q Consensus 858 vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~ 937 (1425)
+++..++|++++|+|+|||||||++..|++.... ..|+|.+.+.+.. | + ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~-----r------------~--~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTF-----R------------A--AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTT-----C------------H--HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccc-----c------------H--HHHHH-----
Confidence 4555679999999999999999999999985421 1234554433210 0 0 00111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 047682 938 WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1014 (1425)
Q Consensus 938 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl---~ia~~L~~~p~illLDEPTsgLD~~~~ 1014 (1425)
+....+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 223344455532 124688999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHH
Q 047682 1015 AIVMRTVRNT 1024 (1425)
Q Consensus 1015 ~~i~~~l~~~ 1024 (1425)
..+++.|+++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-08 Score=118.61 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=108.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.+.|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|+.-+ ++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~~ 245 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSAQ 245 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCHH
Confidence 45789999889999999999999999999999999876432 22 135555542 3433
Q ss_pred HHHHhh-hhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 214 ETLAFS-ARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+...-. +...+.. .+ .+ . .+... .+. ..++...++.++.... .+-+ ..+
T Consensus 246 ~l~~r~~~~~~~~~--~~---~l----~-~g~l~---~~~------------~~~~~~a~~~l~~~~l---~i~d--~~~ 295 (454)
T 2r6a_A 246 QLVMRMLCAEGNIN--AQ---NL----R-TGKLT---PED------------WGKLTMAMGSLSNAGI---YIDD--TPS 295 (454)
T ss_dssp HHHHHHHHHHHTCC--HH---HH----H-TSCCC---HHH------------HHHHHHHHHHHHSSCE---EEEC--CTT
T ss_pred HHHHHHHHHHcCCC--HH---HH----h-cCCCC---HHH------------HHHHHHHHHHHhcCCE---EEEC--CCC
Confidence 322110 0000110 00 00 0 00000 000 1112233344433221 1211 235
Q ss_pred CChhhhhhHHHHHHHh--cCCcEeEEecCCCCCChH--------HHHHHHHHHHHHHHhcCCEEEEEEec----------
Q 047682 293 ISGGQRKRVTTGEMLV--GPALALFMDEISTGLDSS--------TTFQIVTSLRQIIHILNGTAVISLLQ---------- 352 (1425)
Q Consensus 293 LSGGqrqRvsia~al~--~~p~illLDEptsgLD~~--------t~~~i~~~L~~~~~~~~~t~ii~~~q---------- 352 (1425)
+|++|.+ +.++.++ .+|+++++|+++...+.. ....+.+.|+.+++..+.++|+ ++|
T Consensus 296 ~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~~ 372 (454)
T 2r6a_A 296 IRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQD 372 (454)
T ss_dssp CCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC--
T ss_pred CCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCCC
Confidence 8999986 5666666 689999999999987532 3367788899998877666555 555
Q ss_pred --Ch-------hhHHhhcCeEEEEcCCeE
Q 047682 353 --PA-------PETYDLFDDIILISEGQI 372 (1425)
Q Consensus 353 --~~-------~~~~~~~D~vilL~~G~i 372 (1425)
|. ..+...+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-07 Score=105.88 Aligned_cols=118 Identities=20% Similarity=0.125 Sum_probs=78.9
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLY 935 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~ 935 (1425)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~------------------~~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRP------------------AAR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCH------------------HHH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccH------------------hHH-HHH--
Confidence 578887 9999999999999999999999985321 124566655432110 000 111
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHH
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1014 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP-TsgLD~~~~ 1014 (1425)
..+.+..++..+... .+-+..+.+|..|+.+...+++++++||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 112233454332110 11344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 047682 1015 AIVMRTVRNT 1024 (1425)
Q Consensus 1015 ~~i~~~l~~~ 1024 (1425)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887777655
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-08 Score=109.01 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=49.2
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHHHH
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|+.+++|++++|+||||||||||+++|+|.++ .+.++|....... .+..++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2455555443221 1346789999877666666665544
Q ss_pred h
Q 047682 218 F 218 (1425)
Q Consensus 218 f 218 (1425)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-09 Score=124.87 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=54.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC-CCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 210 (1425)
.+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.++.+... .+.+++++|+. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4799999999999 99999999999999999999875 6889998876532211 12345555542 234445
Q ss_pred CHHHHHH
Q 047682 211 TVRETLA 217 (1425)
Q Consensus 211 TV~E~l~ 217 (1425)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 5555553
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-07 Score=101.56 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=36.3
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHH
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQ 337 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~ 337 (1425)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4443445688999999999999999 999999999999988765
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-09 Score=121.45 Aligned_cols=47 Identities=30% Similarity=0.512 Sum_probs=42.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 188 (1425)
.+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 4789999999999 99999999999999999999875 68899988764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-06 Score=100.56 Aligned_cols=45 Identities=24% Similarity=0.099 Sum_probs=39.4
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
+++++. +|++++++|+|||||||++..|+|.+.+. .|+|.+.+.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d 135 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCC
Confidence 678887 99999999999999999999999998765 7888877654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.2e-09 Score=125.70 Aligned_cols=165 Identities=11% Similarity=0.071 Sum_probs=91.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcC----CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC-C-CCCHH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS-P-NVTVY 930 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~-~lTv~ 930 (1425)
.+++.+..+..++|.|++||||||++++|.. ..++ |++.+.+.+.+...+... ..-+.+. + --.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhhh----ccCCcccceeecCHH
Confidence 3677788899999999999999999999864 2222 233333333221111100 0001110 0 01122
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHH----------HHHHHHhhCCc-E
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-I 999 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl----------~ia~~L~~~p~-i 999 (1425)
+....-.++ .++.+++ .+.++..|+.++.+..-.. ...+|+||+||. .+++++...|. +
T Consensus 231 ~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 231 DAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 222111111 1222223 3677788877654321000 124678877652 35566677898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCccH
Q 047682 1000 IFMDEPTSGLDARAAAIVMRTVRNTVDT----GRTVVCTIHQPSI 1040 (1425)
Q Consensus 1000 llLDEPTsgLD~~~~~~i~~~l~~~~~~----g~tvi~~~H~~~~ 1040 (1425)
+++||++.-+|.. ...+.+.+.++++. |.++|+++|+|+.
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 8999999998843 34556666655433 6799999999983
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.6e-07 Score=103.45 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=89.2
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
++|++++++|+||+||||++..|++..... .| +.+.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 479999999999999999999999853210 12 13456666542 3455565543221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1022 (1425)
..++... ...+. ..-+.+|+ .+.+|+++++| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1222110 01222 22344454 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCccHHHHHhcCEEEEEeCCcEEEEECCCC-CCchhHHHHHhhC
Q 047682 1023 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG-RHSSHLISYFEAI 1078 (1425)
Q Consensus 1023 ~~~---~~g~tvi~-~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~-~~~~~~~~yf~~~ 1078 (1425)
-+. ..+.++|+ ++|... ++.+.+|++-.+..+| ++...-.+ .....+++.-...
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVltk~D~~~~~g~~~~~~~~~ 265 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFTKIDETTSLGSVFNILAES 265 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEECTTTCSCCHHHHHHHHTC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEeCCCcccchhHHHHHHHHH
Confidence 322 11334444 478764 5666677665566554 44433211 1123455555444
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.2e-08 Score=103.57 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~ 1024 (1425)
+...+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-07 Score=114.88 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=89.9
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCC--CHHHH
Q 047682 140 VNGIVKPSRLTLLLGPPASGKTTLLLALAG--KLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM--TVRET 215 (1425)
Q Consensus 140 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 215 (1425)
+++.+..+..++|.|++||||||+|+.|.. ....+ .|+|.+.+.+...... +.-..+|.+ +|.++
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeecC
Confidence 677888899999999999999999999875 33333 4666655444322100 000001111 11112
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc--cccCcccccC
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT--MVGDEMLRGI 293 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t--~vg~~~~~~L 293 (1425)
...+. +++.....+.+.+. ..++..|+.+..+. .+. ..+
T Consensus 229 ~~~a~----------------------------------~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~ 269 (512)
T 2ius_A 229 MKDAA----------------------------------NALRWCVNEMERRY-KLMSALGVRNLAGYNEKIA----EAD 269 (512)
T ss_dssp HHHHH----------------------------------HHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHH
T ss_pred HHHHH----------------------------------HHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHh
Confidence 21111 11111111223332 45677777654321 121 248
Q ss_pred ChhhhhhH----------HHHHHHhcCCc-EeEEecCCCCCChHHHHHHHHHHHHHHHhcC--CEEEEEEecChh
Q 047682 294 SGGQRKRV----------TTGEMLVGPAL-ALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISLLQPAP 355 (1425)
Q Consensus 294 SGGqrqRv----------sia~al~~~p~-illLDEptsgLD~~t~~~i~~~L~~~~~~~~--~t~ii~~~q~~~ 355 (1425)
||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++..+ +..++..+|...
T Consensus 270 s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 270 RMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999874 24556677887 89999999998843 3455566666554322 334444555543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=103.39 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999888886543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-09 Score=124.99 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=80.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQNDI-HSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~lT 928 (1425)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ...+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5788999999999 99999999999999999998653 46778887543211 11233456677643 456778
Q ss_pred HHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 047682 929 VYESLLYSAWLRLPP-DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 999 (1425)
Q Consensus 929 v~E~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~i 999 (1425)
+.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 888775332211100 001122222333332 24899999999999999999876
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.7e-07 Score=103.48 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=33.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEE-EECCc
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRV-TYNGH 186 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G~ 186 (1425)
+-+++|+++.|.||||||||||+..+++...+. .|.| ++++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 368999999999999999999999999887543 4544 44443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-08 Score=106.16 Aligned_cols=67 Identities=24% Similarity=0.168 Sum_probs=42.4
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
|+.+++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56678999999999999999999999999642 24444433221 112345688888765444444433
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-09 Score=122.13 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=80.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQND-IHSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~lT 928 (1425)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|.. ...+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4788999999999 99999999999999999998653 45677877543211 1122345666654 3456777
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 047682 929 VYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1425)
Q Consensus 929 v~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP 1005 (1425)
+.|++......+.. .....++..+.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 77777433222211 0011122223333333 24789999999999999999987 4543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-08 Score=126.57 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=97.4
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCC--------
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDI-------- 922 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-------- 922 (1425)
...++++++..+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 345889999999999999999999999999999999965432 23778887766432 3345788876431
Q ss_pred --------------CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHH
Q 047682 923 --------------HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 988 (1425)
Q Consensus 923 --------------~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ 988 (1425)
.+..+++.+|+.....-..+...-.+ . ....-+.+|........ ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 11112222221100000000000000 0 00011122221111111 1469999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 047682 989 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023 (1425)
Q Consensus 989 ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1023 (1425)
.++...+++.+|||||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999998 899888888888864
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-07 Score=100.46 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=23.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALA-GKLDP 173 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 173 (1425)
+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4789999999999999999999999999999999 99753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-07 Score=113.05 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=44.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
.+|+|+|++|++ ++++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 479999999999 99999999999999999999996542 3688999998753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.7e-08 Score=105.85 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=40.6
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-----------ccceEEEEccC
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-----------PQRTAAYISQH 203 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 203 (1425)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999998 899999998763211 13568888873
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-06 Score=100.27 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-------C-CcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH---HHHH
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPS-------L-KLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR---ETLA 217 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~-------~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 217 (1425)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. ...+.|++.|.+. ..|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 48999999999999999999986411 0 23789999886431 1123455544221 1121 1111
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
..... +.+..+. | . .+++.+. .+....+..+++.+++.+..--.|+++. .-+|+|+
T Consensus 254 ~~~~a-------D~il~Vv----D--~-s~~~~~~---------~~~~~~~~~~L~~l~~~~~p~ilV~NK~-Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYS-------DALILVI----D--S-TFSENLL---------IETLQSSFEILREIGVSGKPILVTLNKI-DKINGDL 309 (364)
T ss_dssp GGGGS-------SEEEEEE----E--T-TSCHHHH---------HHHHHHHHHHHHHHTCCSCCEEEEEECG-GGCCSCH
T ss_pred HHHhC-------CEEEEEE----E--C-CCCcchH---------HHHHHHHHHHHHHhCcCCCCEEEEEECC-CCCCchH
Confidence 11000 0000000 0 0 0010000 0111234567788887665433445442 2378888
Q ss_pred hhhHHHH----HHH-hcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHh
Q 047682 298 RKRVTTG----EML-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341 (1425)
Q Consensus 298 rqRvsia----~al-~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~ 341 (1425)
++|+.++ +.+ ..++++ +|+|++|......+.+.|.+....
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 8888887 555 334444 899999999999999988876543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.2e-06 Score=103.03 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCcc
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1039 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1039 (1425)
+++++|-.++.+....|.|||+||+ ++|.|......+.++++.+- +.+..||+++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777777663 24678999999985
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-06 Score=92.32 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1025 (1425)
...|++++.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999988887653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.1e-07 Score=98.52 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=50.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCCHHHHHHhh
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 219 (1425)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 556789999999999999999999999975 77889987764321 112457888876555566677766543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=6.5e-06 Score=88.68 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=33.1
Q ss_pred hHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHH
Q 047682 300 RVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQII 339 (1425)
Q Consensus 300 Rvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~ 339 (1425)
....|++++.+|++.++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999 99999999999998887653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-06 Score=94.58 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc-CCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 890 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~-g~~~ 890 (1425)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999 8753
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.7e-06 Score=95.42 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999999999874
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.92 E-value=4.4e-06 Score=98.84 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=85.9
Q ss_pred CCeE-EEEEcCCCCChhhHHhhhcCCCCC---------ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH--
Q 047682 864 PGVL-TALMGVSGAGKTTLMDVLAGRKTG---------GYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE-- 931 (1425)
Q Consensus 864 ~Ge~-~al~G~sGaGKTTLl~~l~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E-- 931 (1425)
.|-. ++|+|++|||||||+|.|+|.... +...|.+.++|.+.. +....|++.+.+ ...|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHH
Confidence 3444 999999999999999999995421 134688888885431 122345544322 111211
Q ss_pred -HHHHHh--h--c--cCCCCCC--HHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHH----HHH-hhCC
Q 047682 932 -SLLYSA--W--L--RLPPDVD--SETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANP 997 (1425)
Q Consensus 932 -~l~~~~--~--l--r~~~~~~--~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia----~~L-~~~p 997 (1425)
.+.... . + .-..+.. ..+..+.+.++++.+++.+..--.+++. ..-+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 111100 0 0 0001111 1222334567788777655432222322 334788888888887 444 3344
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 047682 998 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026 (1425)
Q Consensus 998 ~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1026 (1425)
++ +|||++|......+.+.|.+...
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 44 89999999999999999887653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=96.87 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=38.4
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecC----------CCCCChHHHHHHHHHHHHHHH--hcCCEEEEEEecCh
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEI----------STGLDSSTTFQIVTSLRQIIH--ILNGTAVISLLQPA 354 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEp----------tsgLD~~t~~~i~~~L~~~~~--~~~~t~ii~~~q~~ 354 (1425)
|+++.|..+++|....|.|+|+||+ ++|.|......+.+.|..+-. ...+.+||..++..
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5678888899999999999999999 346776665555555555421 12355666666654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.82 E-value=7.3e-06 Score=86.94 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=33.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987664
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.3e-07 Score=96.07 Aligned_cols=40 Identities=30% Similarity=0.264 Sum_probs=31.3
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
...++|++++|+||||||||||+++|++.. |.+.++|.+.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 456789999999999999999999999853 5677887654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.6e-06 Score=106.81 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=58.6
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCccHHHHHhcCEEEEE
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~fD~v~~l 1052 (1425)
+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++. ++.+.+++.-++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 34589999999999999999999999999996 999887777766666554445677775 88764 566777643333
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.7e-05 Score=92.25 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=79.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l 933 (1425)
-|+.+.+-++||+++.|.|++|+|||||+.-++..... .|. .+.|+. ..++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~---------~Vl~fS------lEms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDR---------GVAVFS------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTC---------EEEEEE------SSSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCC---------eEEEEe------CCCCHHHHH
Confidence 45666667899999999999999999998888753110 111 123322 123333322
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 047682 934 LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013 (1425)
Q Consensus 934 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~ 1013 (1425)
.++......+++.++++ | .||.++.+|+..|...+.++++.+.|+|...+
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si---- 140 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI---- 140 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH----
T ss_pred ------------------HHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH----
Confidence 11111222222222222 1 49999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHhC--CCEEEEE
Q 047682 1014 AAIVMRTVRNTVDT--GRTVVCT 1034 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~--g~tvi~~ 1034 (1425)
..|...++++.++ |..+|++
T Consensus 141 -~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 141 -EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp -HHHHHHHHHHHHHCTTEEEEEE
T ss_pred -HHHHHHHHHHHHhcCCCCEEEE
Confidence 3555666666543 5666666
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.75 E-value=8.2e-06 Score=88.31 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=28.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
++++|++++|+||||||||||+++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.71 E-value=4.8e-06 Score=96.67 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=62.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------c-----cceEEEE-cc
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------P-----QRTAAYI-SQ 202 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~-----~~~~~yv-~Q 202 (1425)
+++++|+.+++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998776 789998877653211 1 3468889 77
Q ss_pred CCCCCCCCCHHHHHHhh
Q 047682 203 HDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~ 219 (1425)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555677777654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-06 Score=98.81 Aligned_cols=75 Identities=17% Similarity=0.079 Sum_probs=52.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEE--------ECCccCCCCC----ccceEEEE
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALA---GKLDPSLKLSGRVT--------YNGHNMDEFV----PQRTAAYI 200 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 200 (1425)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.+. .+|.++.+.. ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 445544 789999999999999999999999 988877 89998 8898774322 13567888
Q ss_pred ccCC-----CCCCCCCHHHHH
Q 047682 201 SQHD-----VHIGEMTVRETL 216 (1425)
Q Consensus 201 ~Q~d-----~~~~~lTV~E~l 216 (1425)
+|.+ ..+...+|.+++
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 8743 233444555543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.71 E-value=3e-05 Score=90.25 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=82.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+-|+.+.+-++||+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34568888888999999999999999999999988865431 11 24556543 3444
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
.+-.. |+. . ....+.+....+ | .
T Consensus 87 ~ql~~---Rll-------------s---------------------------------~~~~v~~~~l~~---g-----~ 109 (338)
T 4a1f_A 87 EQLAL---RAL-------------S---------------------------------DLTSINMHDLES---G-----R 109 (338)
T ss_dssp HHHHH---HHH-------------H---------------------------------HHHCCCHHHHHH---T-----C
T ss_pred HHHHH---HHH-------------H---------------------------------HhhCCCHHHHhc---C-----C
Confidence 43322 100 0 000000100000 2 3
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii 348 (1425)
||+++++|++.|...+.++++++.|+|... ..+|...++++.+..++..+|
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999999999999998643 336666777776554244444
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.70 E-value=8.4e-05 Score=87.86 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.7
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCcc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1039 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1039 (1425)
..+|++|+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55556677789999 99999999988888887776643 67777777 7653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.1e-05 Score=87.42 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
-|+++.+-+++|+++.|.|++|+|||||+.-++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666777799999999999999999999887774
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.8e-07 Score=108.57 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=42.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE 190 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 190 (1425)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.+.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 3688999999999 99999999999999999999874 6889999877643
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.66 E-value=7.8e-07 Score=97.83 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=37.6
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-----------ccccceEEEeecC
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-----------ETFARISGYCEQN 920 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 920 (1425)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 89999999999999999999996442 24677777765411 1134568898884
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.4e-06 Score=92.38 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=42.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEE--EECCccCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRV--TYNGHNMD 189 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~~ 189 (1425)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445566677778999999999999999999999999986 3 6777 88876553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.56 E-value=2.7e-05 Score=84.03 Aligned_cols=39 Identities=28% Similarity=0.088 Sum_probs=25.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
...+++|||+.+++|+.++|+|||||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999876
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.1e-05 Score=98.53 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=55.8
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCC-CCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEIST-GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEpts-gLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ..++++++.+++...+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 3489999999999999999999999999996 9998877666666554321 22455566677777777788753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.50 E-value=6.3e-06 Score=92.13 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=35.3
Q ss_pred eEEEecc-eeeeecchhhhhccccCCceeeeeceeEEEeC---CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 826 SLTFEDV-VYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 826 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+.++|+ ++.++ +...+|+|+|+.|++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3677887 76551 124589999999999 9999999999999999999999743
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=3.2e-05 Score=82.08 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 184 (1425)
+|++++|+||||||||||++.|++.+++. ..|.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987642 25655443
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=7.6e-07 Score=109.13 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=80.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQNDI-HSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~lT 928 (1425)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.++.++|... ..|.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3678899999999 99999999999999999998643 35677887653221 01122344555432 344555
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 929 VYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 929 v~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
+.|++......+.. .....++..+.+.+++. .+||||+|+..|+++...+|++ |||+.-
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55555321111110 00112333334444443 3678888888888888889987 788764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=2.4e-05 Score=84.71 Aligned_cols=70 Identities=6% Similarity=0.043 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHH-HHHhcCEEEEEe
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 1053 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~fD~v~~l~ 1053 (1425)
+.|+.+|..++..+..+|+.+.++ ++.+++.....+.+.+++. .+.+||+.+|..... ....||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678888999998888888654333 3345666555555544432 356888888875421 245789998886
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00016 Score=83.33 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~ 944 (1425)
+..++|+|++|+|||||++.|.|.... + ..+.+ +.+..+..|++.+++..+ ++.| .| .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i---~~iD---------Tp-G 65 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQA---IYVD---------TP-G 65 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEE---EEES---------SS-S
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeE---EEEE---------Cc-C
Confidence 348999999999999999999986420 1 11222 122345667777764321 1000 11 1
Q ss_pred CCHHHHHHHHHHHH-----HHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHH
Q 047682 945 VDSETRRMFLEEIM-----ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAI 1016 (1425)
Q Consensus 945 ~~~~~~~~~v~~~l-----~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~illLDEPTsgLD~~~-~~~ 1016 (1425)
...+.. ...++.+ +.+.-.+..-..+ +... +|.|++ .+++.+. ..|.++++ |.+|... ...
T Consensus 66 ~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vv--d~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 66 LHMEEK-RAINRLMNKAASSSIGDVELVIFVV--EGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp CCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEE--ETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred CCccch-hhHHHHHHHHHHHHHhcCCEEEEEE--eCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 110000 0111111 0111111111111 1123 899887 4566666 67999998 8999876 667
Q ss_pred HHHHHHHHHhC-CC--EEEEEecCccHHHHHhcCEE
Q 047682 1017 VMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 1017 i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+.+.++++.+. |. ++.+++|+-. .+.+++|.+
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 77888887654 43 4555666543 344444443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00026 Score=84.19 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCcc
Q 047682 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1039 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1039 (1425)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776655 5778999999974
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00027 Score=81.96 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=79.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+-|+++.+-+++|+++.|.|+||+|||||+.-++...-. .| ..+.|++-+ ++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND---------------DVVNLHSLE------MGK 108 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---------------CEEEEEESS------SCH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---------------CeEEEEECC------CCH
Confidence 34568888888999999999999999999999888754321 12 146666542 444
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc--ccccccccCccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD--VCADTMVGDEML 290 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~ 290 (1425)
.+...-.... ..|++ +..+ |.
T Consensus 109 ~~l~~R~~~~---------------------------------------------------~~~i~~~~l~~---~~--- 131 (315)
T 3bh0_A 109 KENIKRLIVT---------------------------------------------------AGSINAQKIKA---AR--- 131 (315)
T ss_dssp HHHHHHHHHH---------------------------------------------------HTTCCHHHHHS---CH---
T ss_pred HHHHHHHHHH---------------------------------------------------HcCCCHHHHhc---CC---
Confidence 4433210000 00110 0000 00
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
..||+++++|+..|...+.++++++.|+|... ..++.+.++++.+..+
T Consensus 132 ~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~ 179 (315)
T 3bh0_A 132 RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNP 179 (315)
T ss_dssp HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcC
Confidence 13899999999999888888999999988632 3456666676655444
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.37 E-value=5.9e-05 Score=81.30 Aligned_cols=39 Identities=28% Similarity=0.132 Sum_probs=24.3
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
....++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=5e-05 Score=97.02 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+++|..++|+|++|+|||||++.|++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 45678999999999999999999999963
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=2.3e-05 Score=92.83 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=31.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccEEE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK--LDPSLKLSGRVT 182 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~ 182 (1425)
..+|+++++.++ .++|+|++|||||||+++|+|. ++.. +|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCccc
Confidence 358999999998 8999999999999999999994 4544 55544
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.32 E-value=1.6e-05 Score=88.95 Aligned_cols=40 Identities=40% Similarity=0.413 Sum_probs=36.3
Q ss_pred cceeeeceEEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 133 KFTILKDVNGIVKP---SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
..++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999 99999999999999999999998753
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=6.8e-05 Score=82.84 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=34.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 188 (1425)
..++|++++|.|+||||||||+++|+|. .|+|.+.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4578999999999999999999999997 47788887654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.29 E-value=8e-05 Score=78.82 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.3
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999 9999999999999999999863
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00081 Score=77.03 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCcc---HHH
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1042 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1042 (1425)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998776532 22233333333211 2346788999764 234
Q ss_pred HHhcCEE
Q 047682 1043 FEAFDEL 1049 (1425)
Q Consensus 1043 ~~~fD~v 1049 (1425)
...||+.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4455543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0003 Score=83.23 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1036 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1036 (1425)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| +||++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 44456666665555 57766665
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00084 Score=78.73 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=74.8
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhc
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWL 939 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~l 939 (1425)
+-+++|+++.|.||+|+|||||+..++....-... .+|. ...+.|+.-+..+ ....-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-----~gg~-------~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-----GGYP-------GGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-----TTBC-------CCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-----cCCC-------CCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 56899999999999999999999988763110000 0000 0123344333221 222222222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH-HHHHHHHHHHHh----hCCcEEEEeCCCCCCCHH--
Q 047682 940 RLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV----ANPSIIFMDEPTSGLDAR-- 1012 (1425)
Q Consensus 940 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG-qrqRl~ia~~L~----~~p~illLDEPTsgLD~~-- 1012 (1425)
. .+. +++++.+-+ .+ ..++. +.+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~---~~---------~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLY---AR---------AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEE---EE---------CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeE---ee---------cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 123332211 11 12333 234555666666 568999999999866432
Q ss_pred ----------HHHHHHHHHHHHHhC-CCEEEEEecCc
Q 047682 1013 ----------AAAIVMRTVRNTVDT-GRTVVCTIHQP 1038 (1425)
Q Consensus 1013 ----------~~~~i~~~l~~~~~~-g~tvi~~~H~~ 1038 (1425)
....+++.|++++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 124555566666644 88999988854
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00014 Score=79.05 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=7.8e-05 Score=80.52 Aligned_cols=41 Identities=24% Similarity=0.105 Sum_probs=34.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4688999999999999999999999998765 6777766543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.18 E-value=2.8e-05 Score=87.25 Aligned_cols=57 Identities=23% Similarity=0.138 Sum_probs=42.9
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhc---CCCCCceEEEEEE--------EcCccCCc----ccccceEEEeecCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIK--------ISGYPKKQ----ETFARISGYCEQND 921 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 921 (1425)
++|++++|+|||||||||++++|+ |... +..|.+. .+|.+... ...++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 7643 3457777 77776532 23445678888754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00066 Score=73.30 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=36.7
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH--HhhcCeEEEEc
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPET--YDLFDDIILIS 368 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~--~~~~D~vilL~ 368 (1425)
.+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .++.+|+ -.+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 3678899999999988888654333 3345555544444433321 2344444 33444343 56788887773
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.18 E-value=4.3e-05 Score=88.66 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=38.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34689999999999999999999999999999985321 135666665543
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00013 Score=78.23 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999875
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00012 Score=79.06 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
++++|++++|+|||||||||++++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.16 E-value=5.2e-05 Score=89.68 Aligned_cols=44 Identities=34% Similarity=0.362 Sum_probs=39.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY 183 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 183 (1425)
..+|+++|+.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 35899999999999999999999999999999999864 577655
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=6.2e-05 Score=83.19 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
++..++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344579999999999999999999999986 24577777653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00012 Score=77.62 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI 900 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i 900 (1425)
+|++++|+||||||||||++.|++.... ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 7899999999999999999999985432 13444444
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00013 Score=76.57 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=30.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999874 667777654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00088 Score=79.08 Aligned_cols=56 Identities=5% Similarity=0.131 Sum_probs=41.4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEe-cCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEE
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMD-EISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLD-EptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~ 350 (1425)
.+|+||++++. +.+...++-++++| ++.+|+|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999988876 55556788899999 99999999888777776665432 44555543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0016 Score=75.73 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.7
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 136 ILKDVN-GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 136 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344432 579999999999999999999999988753
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00094 Score=77.71 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=74.9
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCC-CCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhh
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW 938 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~ 938 (1425)
+-+++|+++.|.||+|+|||||...++... .+.. . .|. ...+.|+.-+..+ ...+-......
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~-----gg~-------~~~vlyi~~e~~~----~~~~l~~~~~~ 164 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-K-----GGL-------SGKAVYIDTEGTF----RWERIENMAKA 164 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-G-----TCC-------SCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-c-----CCC-------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 568999999999999999999998887521 1100 0 000 0123344333221 12211111111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH-HHHHHHHHHHHh---hCCcEEEEeCCCCCCCH---
Q 047682 939 LRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA--- 1011 (1425)
Q Consensus 939 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG-qrqRl~ia~~L~---~~p~illLDEPTsgLD~--- 1011 (1425)
+. .+. +++++.+- +. +..+.. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 165 ~g----~~~-------~~~~~~l~---~~---------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~ 221 (324)
T 2z43_A 165 LG----LDI-------DNVMNNIY---YI---------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP 221 (324)
T ss_dssp TT----CCH-------HHHHHTEE---EE---------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC
T ss_pred hC----CCH-------HHHhccEE---EE---------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc
Confidence 11 111 12222110 11 113433 345677778887 57999999999986532
Q ss_pred -----HH----HHHHHHHHHHHHhC-CCEEEEEecCc
Q 047682 1012 -----RA----AAIVMRTVRNTVDT-GRTVVCTIHQP 1038 (1425)
Q Consensus 1012 -----~~----~~~i~~~l~~~~~~-g~tvi~~~H~~ 1038 (1425)
.. ...+++.|++++++ |++||++.|-.
T Consensus 222 ~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 222 GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 11 24455556666543 89999988753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0028 Score=72.49 Aligned_cols=27 Identities=44% Similarity=0.683 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999865
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=7.9e-05 Score=95.16 Aligned_cols=48 Identities=33% Similarity=0.330 Sum_probs=35.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 191 (1425)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|....+.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 456789999999999999999999999765431 226777 566555443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0026 Score=74.50 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=29.1
Q ss_pred eeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 137 LKDVN-GIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 137 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 57999999999999999999999999875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00031 Score=75.97 Aligned_cols=43 Identities=30% Similarity=0.238 Sum_probs=35.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIG 208 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 208 (1425)
.+++|++++|+|+||||||||++.|++.++ .+.+++|++.+++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccC
Confidence 467899999999999999999999999863 2678888766654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00012 Score=90.89 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=36.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEE-ECCcc
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG-RVT-YNGHN 187 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 187 (1425)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47899999999999999999999999999876 65 674 78754
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00011 Score=79.33 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=36.4
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEE--EEcCcc
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--KISGYP 904 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i--~i~g~~ 904 (1425)
..+.++...++|++++|+|||||||||+.++|++.... .|.+ .++|.+
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~ 63 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDN 63 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCch
Confidence 44556666789999999999999999999999986421 2334 676654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00012 Score=86.66 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+|+++|+.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5889999999999999999999999999999999853
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.90 E-value=7.1e-05 Score=86.48 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=30.1
Q ss_pred eeeceEEEEeCCe------EEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 136 ILKDVNGIVKPSR------LTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 136 iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.|++++..+..++ +++|+||||||||||+++|.+.+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4555555554444 8999999999999999999998863
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00032 Score=76.08 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.8
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKT 890 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~ 890 (1425)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0028 Score=72.88 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=41.7
Q ss_pred CChhhhhhHHHHHHHh--cCCcEeEEecCCCCCChHH-HHHHHHHHHHHHHhcCC-EEEEEEecChhhHHhhcCeE
Q 047682 293 ISGGQRKRVTTGEMLV--GPALALFMDEISTGLDSST-TFQIVTSLRQIIHILNG-TAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 293 LSGGqrqRvsia~al~--~~p~illLDEptsgLD~~t-~~~i~~~L~~~~~~~~~-t~ii~~~q~~~~~~~~~D~v 364 (1425)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+.++++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 5666676 78999999 8999877 66777777777654442 23333333344444455443
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00052 Score=70.28 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=24.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00051 Score=74.27 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+++|++++|+|+|||||||+.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999864
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00038 Score=72.77 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0015 Score=79.46 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=92.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l 933 (1425)
-|+.+.+-+++|+++.|.|++|+|||||..-++...... . |. .+.|+.= .++..+-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~------g~---------~vl~~sl------E~~~~~l~ 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--E------GV---------GVGIYSL------EMPAAQLT 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--T------CC---------CEEEEES------SSCHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--C------CC---------eEEEEEC------CCCHHHHH
Confidence 456666669999999999999999999988777521100 0 00 1222211 12222211
Q ss_pred H--HHhhccCCC------CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEEEEe
Q 047682 934 L--YSAWLRLPP------DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMD 1003 (1425)
Q Consensus 934 ~--~~~~lr~~~------~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~illLD 1003 (1425)
. .+.....+. ..+.++. ..+.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+++++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 1 011111110 1222222 2233334333222211 111 125777765 34556565 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------ccH-------HHHHhcCEEEEEeC
Q 047682 1004 EPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLMKR 1054 (1425)
Q Consensus 1004 EPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~~~~~fD~v~~l~~ 1054 (1425)
..+.=.+. .....+.+.|+.++++ +++||+++|- |.. .+...+|.|+.|.+
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98753322 1234677778888765 8999999983 210 24457899999874
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.001 Score=80.80 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=48.6
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE-EeCCcEEEEECCCC
Q 047682 995 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGYEIYVGPLG 1065 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~-l~~Gg~~~y~G~~~ 1065 (1425)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.|..++....+++.- +. .|.++..+|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887764 6777888999888878999999999865332112222221 22 35667777765
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0044 Score=73.52 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 146 PSR--LTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 146 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345 89999999999999999999987653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00063 Score=69.64 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.5
Q ss_pred eeEEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 858 vs~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 44555565 99999999999999999986
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=80.50 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=40.0
Q ss_pred cCCcEeEEecCCCCCCh-HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE-EcCCeEEEecC
Q 047682 309 GPALALFMDEISTGLDS-STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL-ISEGQIVFQGP 377 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~-~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil-L~~G~iv~~G~ 377 (1425)
.++++|++||+..-.+. .+...+.+.+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 37899999999887765 566777788777643 3556666544444433222222222 33455544443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00039 Score=82.47 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999974
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00061 Score=72.92 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+|++++|+||||||||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999999999754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0042 Score=71.36 Aligned_cols=29 Identities=41% Similarity=0.519 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45678999999999999999999987553
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=75.68 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.6
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++++.-+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35688899999999999999999999754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00055 Score=80.49 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=33.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987765 6777666544
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.01 Score=72.06 Aligned_cols=38 Identities=32% Similarity=0.549 Sum_probs=32.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777789999999999999999999999888754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00074 Score=70.78 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=28.5
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY 903 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~ 903 (1425)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCc
Confidence 479999999999999999999999753 34556654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00023 Score=83.46 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=39.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 185 (1425)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4677888888999999999999999999999999988654 55555433
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00061 Score=71.81 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=31.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEECCccC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG--RVTYNGHNM 188 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~~ 188 (1425)
++|++++|.|++||||||+.+.|++.+.+ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998754 34 566665443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0043 Score=74.44 Aligned_cols=35 Identities=29% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY 183 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 183 (1425)
++.+++++|||||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68999999999999999999999988654 445543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0028 Score=76.04 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHHHhhCCcEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 047682 988 TIAVELVANPSIIFMDEPT-SG--LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037 (1425)
Q Consensus 988 ~ia~~L~~~p~illLDEPT-sg--LD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1037 (1425)
+++.+...+++++++|+|. .+ .|.....++.++++.+......+|+.+|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 4555555689999999997 45 78877777777665553333444555553
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0059 Score=70.13 Aligned_cols=29 Identities=41% Similarity=0.673 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++++.-++|.||||+|||||+++|++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 56788899999999999999999998764
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.022 Score=66.72 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=26.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+-+++|+++.|.||||||||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0012 Score=78.12 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0011 Score=73.02 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=27.7
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 136 ILKDVNGIVK---PSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 136 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
=|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4778888876 9999999999999999999999998753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0026 Score=77.19 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC------C---CCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHH
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDP------S---LKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~------~---~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|+++.-.+ .++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999998531 0 023789999997642211 12333444443333444444555
Q ss_pred HHh
Q 047682 216 LAF 218 (1425)
Q Consensus 216 l~f 218 (1425)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00095 Score=69.69 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.|++++|+|+|||||||++++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00034 Score=76.74 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcccEEEE
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKL---DPSLKLSGRVTY 183 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~ 183 (1425)
+.+++|+|||||||||+.+.|++.+ .++ +|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---Ccceee
Confidence 4689999999999999999999876 344 677765
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00031 Score=81.12 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.2
Q ss_pred eeeeeceeEEEeCCe------EEEEEcCCCCChhhHHhhhcCCC
Q 047682 852 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge------~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
++.|++++..+..++ ++||+||||||||||+++|.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346667777776665 99999999999999999999853
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0031 Score=65.87 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999974
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00063 Score=79.20 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=30.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00057 Score=85.25 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=39.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 185 (1425)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3566667666 89999999999999999999999998765 67776655
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00086 Score=72.78 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=34.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEECCcc
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG--RVTYNGHN 187 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 187 (1425)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4678999999999999999999999998754 67 77777643
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.005 Score=67.21 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CccHHHHHhcCEEEEEe
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~fD~v~~l~ 1053 (1425)
+++++++||.-. |+. .+.+.++.+++.|.+||++-| .++.++.+++|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355566777777999999999 66778999999999886
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0037 Score=65.29 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999985
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0015 Score=70.40 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=68.70 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=24.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
+.++.+.+ .+++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34455555 4999999999999999999864
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.029 Score=61.77 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
.++|+|++|+|||||++.|+|.....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 47999999999999999999976543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0058 Score=69.33 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++.-+.|.||+|+|||||.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998753
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=66.84 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=20.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 789999998887 5689999999999999999984
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0028 Score=68.40 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.3
Q ss_pred eeEEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 858 vs~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 44555565 99999999999999999885
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0046 Score=74.90 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=28.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555555689999999999999999999777764
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0013 Score=72.77 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD 1047 (1425)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-++++++.--+.....+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445554442 33578899999999966 6877766544444444332234666655444434444554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0011 Score=73.27 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=37.6
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCC-CCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEIST-GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEpts-gLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.|.-.+.. +..+.+-+++++||.-. ++|.......++.+..... .-++++++-+.+.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 34444432 33578889999999976 6777665444444433221 1235555556665555555543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0068 Score=64.92 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.-+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0028 Score=67.16 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999876
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0026 Score=68.60 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998764
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.00058 Score=80.67 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=35.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.....-.......+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 44778888876 999999999999999998875433 444433333221110011234444443333345666
Q ss_pred HHHHh
Q 047682 214 ETLAF 218 (1425)
Q Consensus 214 E~l~f 218 (1425)
||.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0051 Score=65.30 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999988877 7899999999999999999973
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0032 Score=69.33 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.6
Q ss_pred eeceeEEEe---CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 855 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 855 L~~vs~~i~---~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
|.++++++. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455666665 89999999999999999999999754
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.026 Score=66.20 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+-+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999999877764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.012 Score=68.03 Aligned_cols=46 Identities=4% Similarity=0.081 Sum_probs=34.6
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 047682 994 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 994 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
..++++||+||+-. .-|..+...+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 45799999999866 23447778888888887777777777777553
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0019 Score=69.25 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=29.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46788888777775 689999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0035 Score=65.84 Aligned_cols=40 Identities=28% Similarity=0.219 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865421224777776654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0028 Score=67.07 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=26.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
++|.++.|+|++||||||+.+.|++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.032 Score=61.50 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.0
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 047682 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1036 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1036 (1425)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888666665555543321 1258888888
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.025 Score=65.44 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999999887764
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.017 Score=62.98 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=38.6
Q ss_pred CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEe---------cChhhHHhhcCeEEEEc
Q 047682 310 PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL---------QPAPETYDLFDDIILIS 368 (1425)
Q Consensus 310 ~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~ 368 (1425)
+++++++||.-. |+.. +++.++.+++ .+..+|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999965 6653 4556666665 3566666544 46788999999999875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0055 Score=71.05 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.-+.|.||+|+|||||+++|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999998764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0033 Score=75.29 Aligned_cols=45 Identities=24% Similarity=0.099 Sum_probs=38.3
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998775 6777776543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.03 Score=65.88 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35567899999999999999999864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.004 Score=73.65 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.6
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 335567888999999999999999999997
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.016 Score=62.01 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhhHHhhhcCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.-+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999863
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0023 Score=79.40 Aligned_cols=42 Identities=36% Similarity=0.501 Sum_probs=32.2
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-EEE-EcCcc
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIK-ISGYP 904 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~i~-i~g~~ 904 (1425)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 3679999999999999999999999996432 122 453 66643
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0018 Score=75.84 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578888999999999999999999999999999874
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0032 Score=70.45 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 188 (1425)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 356788999999999999999999998874 24566777543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0045 Score=65.05 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999975
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0078 Score=73.00 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCC------C----ceEEEEEEEcCcc
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKT------G----GYITGNIKISGYP 904 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~------~----~~~~G~i~i~g~~ 904 (1425)
-.++|+|+||+|||||+|.|+|... + ....|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3699999999999999999999532 1 1345788888864
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0035 Score=73.00 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=31.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.022 Score=64.39 Aligned_cols=28 Identities=43% Similarity=0.691 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++.-++|.||+|+|||||+++++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998763
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0047 Score=67.50 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+++|+|||||||||+.++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999974
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.005 Score=66.33 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998644
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0054 Score=64.89 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778888999999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0023 Score=73.32 Aligned_cols=45 Identities=24% Similarity=0.130 Sum_probs=36.4
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCc
Q 047682 138 KD-VNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH 186 (1425)
Q Consensus 138 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~ 186 (1425)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777766 9999999999999999999999998764 566665543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0068 Score=65.05 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047682 149 LTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G 169 (1425)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.072 Score=62.56 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999865
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0018 Score=75.14 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=31.4
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 136 ILKDVNGIVKPSRL--TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 136 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++++++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666777778877 99999999999999999999764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0037 Score=66.84 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4778888888887 5799999999999999999974
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0091 Score=62.92 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+|..++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0073 Score=67.45 Aligned_cols=45 Identities=31% Similarity=0.565 Sum_probs=29.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.++++++..++| ++|.||||+|||||+++|++..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 355555555555 8899999999999999999986432 35566543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0033 Score=78.29 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=37.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY 903 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~ 903 (1425)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 4567777777 899999999999999999999998543 34567766654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=62.29 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0074 Score=70.82 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++.+++|+|++|||||||+|.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999984
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0026 Score=75.13 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 34677888876 99999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=60.77 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.++|+|+||+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.018 Score=67.91 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35668999999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.019 Score=60.20 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.016 Score=63.43 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC-CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g-~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
++..+.|.||+|+|||||++.++. ....+...-.+..+..........
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 99 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALL------------------------------- 99 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGG-------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH-------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH--HHHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA--AAIVMRT 1020 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~--~~~i~~~ 1020 (1425)
..+.+|.+|++|| ...++... ...+.+.
T Consensus 100 -------------------------------------------------~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~ 129 (242)
T 3bos_A 100 -------------------------------------------------EGLEQFDLICIDD-VDAVAGHPLWEEAIFDL 129 (242)
T ss_dssp -------------------------------------------------TTGGGSSEEEEET-GGGGTTCHHHHHHHHHH
T ss_pred -------------------------------------------------HhccCCCEEEEec-cccccCCHHHHHHHHHH
Q ss_pred HHHHHhCCCE-EEEEecCc
Q 047682 1021 VRNTVDTGRT-VVCTIHQP 1038 (1425)
Q Consensus 1021 l~~~~~~g~t-vi~~~H~~ 1038 (1425)
++...+.+.. +|++++.+
T Consensus 130 l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 130 YNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp HHHHHHHCSCEEEEEESSC
T ss_pred HHHHHHcCCCeEEEEcCCC
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0092 Score=63.98 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.011 Score=61.84 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.13 Score=59.53 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
.|..-+.|.||+|+|||||.+.++....+... +.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH---------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC-------CCCCCHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAAA 1015 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP-------TsgLD~~~~~ 1015 (1425)
.+....+| ...+.-|-.+..+-..+|.|||+||. .++.......
T Consensus 81 ----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HhCCCEEEEEecCc---cHHHHHhcCEEEEE
Q 047682 1016 IVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFEAFDELFLM 1052 (1425)
Q Consensus 1016 ~i~~~l~~~-----~~~g~tvi~~~H~~---~~~~~~~fD~v~~l 1052 (1425)
.+.+.+..+ ...+..||+++..| ...+...||+.+.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.013 Score=60.56 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.043 Score=75.69 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
-+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.0089 Score=64.12 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.11 Score=64.11 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=45.3
Q ss_pred HHHHHHHHHh--hCCcEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhC-CCEEEEEecCcc--------------
Q 047682 985 KRLTIAVELV--ANPSIIFMDEPTSGL-------DA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-------------- 1039 (1425)
Q Consensus 985 qRl~ia~~L~--~~p~illLDEPTsgL-------D~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-------------- 1039 (1425)
+.+..++.++ .+|+++++|=-+. + +. .....+++.|++++++ |++||+++|-..
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 3444555554 3699999995443 2 21 2334577778887755 999999998542
Q ss_pred -------HHHHHhcCEEEEEeC
Q 047682 1040 -------IDIFEAFDELFLMKR 1054 (1425)
Q Consensus 1040 -------~~~~~~fD~v~~l~~ 1054 (1425)
..+...+|-|+.|.+
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEEe
Confidence 135567899999964
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.013 Score=60.47 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0033 Score=73.58 Aligned_cols=41 Identities=32% Similarity=0.570 Sum_probs=35.2
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 134 FTILKDVNGIVKPSRL--TLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3477778888888988 9999999999999999999987543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.039 Score=66.77 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=32.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44577777779999999999999999999988887643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=66.03 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 185 (1425)
.|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467899999999999999999987653 24556665
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.053 Score=60.32 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 941 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~ 941 (1425)
+++..-+.|.||+|+|||||.+.++.... .--+.+++.......
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc--------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC-----------C
Q 047682 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 1010 (1425)
Q Consensus 942 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL-----------D 1010 (1425)
.-.+..+.+-.+..+.-..|.+|++||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEecCcc---HHHHH--hcCEEEEEe
Q 047682 1011 ARAAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDIFE--AFDELFLMK 1053 (1425)
Q Consensus 1011 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~~~--~fD~v~~l~ 1053 (1425)
......+.+++..+.. .+..||++++.|. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.0036 Score=72.62 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.4
Q ss_pred eeeeceeEEEeCCeE--EEEEcCCCCChhhHHhhhcCC
Q 047682 853 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++++++..+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367888888999988 999999999999999999974
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.013 Score=61.54 Aligned_cols=37 Identities=38% Similarity=0.380 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCC-CceEEEEEEEcC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNIKISG 902 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~-~~~~~G~i~i~g 902 (1425)
.+++|+|+||||||||++.|.+... .+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5899999999999999999987421 122345666554
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=61.45 Aligned_cols=27 Identities=48% Similarity=0.628 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.032 Score=59.38 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CccHHHHHhcCEEEEEe
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~fD~v~~l~ 1053 (1425)
+.+++++||.-- +|+. +++.++++++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 478999999654 6643 35667887777999999999 66678999999998876
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=60.66 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.013 Score=69.33 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=32.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC---------CceEEEEEEEcCc
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNIKISGY 903 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~---------~~~~~G~i~i~g~ 903 (1425)
-+.++.|..++|+|+||+|||||++.|+|... -.+..|.+.+++.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34567889999999999999999999998521 1233567766653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.018 Score=63.14 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999664
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.26 Score=60.72 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=30.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+-|+.+-+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 3566666669999999999999999999988776543
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.018 Score=63.43 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.018 Score=60.75 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999999753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.021 Score=60.02 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.014 Score=63.21 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.3
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+++|.+++|+|++||||||+.+.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999999754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=60.79 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.018 Score=60.60 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.021 Score=63.66 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998653
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.023 Score=58.68 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 047682 149 LTLLLGPPASGKTTLLLAL 167 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L 167 (1425)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.027 Score=60.43 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.021 Score=59.94 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.027 Score=58.72 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 047682 148 RLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G 169 (1425)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.24 Score=68.40 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=29.7
Q ss_pred eeeceE--EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 136 ILKDVN--GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 136 iL~~vs--~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-|+.+- +-+++|+++.|.||||+|||||...++...
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466654 469999999999999999999988877543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.019 Score=61.56 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.093 Score=61.65 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcC--CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWL 939 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~l 939 (1425)
+++|+++.|.|++|+|||||...++. ...++.+ +.++........+.+..|.-.++-......|+.+.+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v---lyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~----- 142 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC---AFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE----- 142 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE---EEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-----
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE---EEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHH-----
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCC--------
Q 047682 940 RLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL-------- 1009 (1425)
Q Consensus 940 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~illLDEPTsgL-------- 1009 (1425)
+++.++ .+++++++|..+.=.
T Consensus 143 -------------------------------------------------~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~ 173 (366)
T 1xp8_A 143 -------------------------------------------------IMELLVRSGAIDVVVVDSVAALTPRAEIEGD 173 (366)
T ss_dssp -------------------------------------------------HHHHHHTTTCCSEEEEECTTTCCCSTTC---
T ss_pred -------------------------------------------------HHHHHHhcCCCCEEEEeChHHhccccccccc
Q ss_pred --CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 047682 1010 --DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1036 (1425)
Q Consensus 1010 --D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1036 (1425)
|. ..++.+.+.++++ .+.+++||++.|
T Consensus 174 ~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 174 MGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.024 Score=59.41 Aligned_cols=26 Identities=46% Similarity=0.409 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999998554
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.024 Score=59.11 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
|.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.024 Score=60.06 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.027 Score=59.66 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.024 Score=58.60 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=60.22 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998754
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.096 Score=56.36 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
.+|.+..+.|+-||||||.+--++-+.. ..-++..-+-|.-|.-+..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~-----------------~~g~kVli~k~~~d~R~ge---------------- 72 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ-----------------FAKQHAIVFKPCIDNRYSE---------------- 72 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH-----------------HTTCCEEEEECC-----------------------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-----------------HCCCEEEEEEeccCCcchH----------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1022 (1425)
..+...+|+.-.+...-........-.+ +.+++++||.-- +| ...++.++
T Consensus 73 ------------~~i~s~~g~~~~a~~~~~~~~~~~~~~~-------------~~dvViIDEaQF-~~----~~~V~~l~ 122 (214)
T 2j9r_A 73 ------------EDVVSHNGLKVKAVPVSASKDIFKHITE-------------EMDVIAIDEVQF-FD----GDIVEVVQ 122 (214)
T ss_dssp ----------------------CCEEECSSGGGGGGGCCS-------------SCCEEEECCGGG-SC----TTHHHHHH
T ss_pred ------------HHHHhhcCCeeEEeecCCHHHHHHHHhc-------------CCCEEEEECccc-CC----HHHHHHHH
Q ss_pred HHHhCCCEEEEEec---------CccHHHHHhcCEEEEEe
Q 047682 1023 NTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 1023 ~~~~~g~tvi~~~H---------~~~~~~~~~fD~v~~l~ 1053 (1425)
++++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 123 ~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 123 VLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp HHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.032 Score=59.45 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998753
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.033 Score=60.35 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.16 Score=51.11 Aligned_cols=42 Identities=2% Similarity=0.078 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1038 (1425)
+..+||+||.- .|+......+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35789999965 5788888888888776533456677777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1425 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-23 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-19 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-20 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-17 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-15 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-17 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-17 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 6e-04 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.002 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.003 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.004 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.004 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 2e-28
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 18/213 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L+GVS + G +T ++G +G+GK+TL++V+ G + G + K + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFL----------EEIMELVE 962
Q +TV E+LL ++S + ++ +I+E ++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 963 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L+ L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G T + H+ + D L++M G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 98.9 bits (246), Expect = 2e-23
Identities = 54/255 (21%), Positives = 94/255 (36%), Gaps = 35/255 (13%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+F L V+ V +TL++GP SGK+TL+ + G L GRV + ++
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 193 P----QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
P Q + EMTV E L C G + + +++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
KA +++ L L D G+ +SGGQ K V G L+
Sbjct: 130 ------KAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368
+ MDE G+ I + ++ G + + + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224
Query: 369 EGQIVFQGPREHVLE 383
GQI+ +G E ++
Sbjct: 225 NGQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (282), Expect = 2e-28
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 12/216 (5%)
Query: 846 GVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISG 902
+ ++ + L V+ + G ++MG SG+GK+T+++++ + T G + NIK +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 903 YPKKQETFARIS--GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMEL 960
+ T R G+ Q P +T E++ + + E RR E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 961 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1021 VRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
++ + G+TVV H I++ + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 86.0 bits (213), Expect = 3e-19
Identities = 46/262 (17%), Positives = 89/262 (33%), Gaps = 57/262 (21%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
++ LK+VN +K ++GP SGK+T+L + P+ G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 188 MDEFVPQRTA-------AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 240
++ ++ Q I +T E + + G +S E+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG-------AMSGEER 121
Query: 241 DANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300
+AL + A+ +SGGQ++R
Sbjct: 122 RK------------RALECLK-----------MAELEERFANHKPNQ-----LSGGQQQR 153
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
V L + D+ + LDS T +I+ L+++ T V+ T+D+
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDI 206
Query: 361 -----FDDIILISEGQIVFQGP 377
+ II + +G++ +
Sbjct: 207 NVARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 111 bits (280), Expect = 5e-28
Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 17/206 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
+ G+ G + L+G +GAGKTT + +AG R G I N +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
+ P +TVYE+L+ A+ R + +R L + L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1033 CTIHQPSIDIFEAF---DELFLMKRG 1055
+ A ++++ G
Sbjct: 194 LVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 80.0 bits (197), Expect = 5e-17
Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 42/252 (16%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS-LKLSGRVTYNGHNMDEF 191
+K ++ V ++ L+G +GKTT L A+AG + K+ +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 192 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
+ + A + + E+TV E L A + +E
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL------------ 125
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
L + G +SGG+++ + G L+
Sbjct: 126 ----------------------FPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP 158
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
L MDE S GL ++ +++I GT ++ + Q A + ++ GQ
Sbjct: 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQ 216
Query: 372 IVFQGPREHVLE 383
IV +G +L+
Sbjct: 217 IVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (274), Expect = 4e-27
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 52/271 (19%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
FT + +N +K +LLGP GKTT L +AG +P+ GR+ + ++
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLP 74
Query: 193 P-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
P R + + Q MTV E +AF + + + E D +
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK----------FPKDEIDKRV------- 117
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
+ ++L ++ + +SGGQR+RV +V
Sbjct: 118 -----------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEP 155
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
L MDE + LD+ + ++++ L T + E + D I +++ GQ
Sbjct: 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQ 214
Query: 372 IVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
++ G V + P VA F+
Sbjct: 215 LLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (269), Expect = 2e-26
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 21/212 (9%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
+N ++ + G L+G SG GKTT + ++AG T G I + Y +
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK 76
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ R Q+ P++TVYE++ + ++ + + EL+++ L
Sbjct: 77 D---RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL 130
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1026
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 131 NRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 185
Query: 1027 TGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
T + H D EA D + +M RG
Sbjct: 186 LKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 103 bits (258), Expect = 4e-25
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 13/208 (6%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
++ Y + N+ E L + A S +E E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 88.1 bits (218), Expect = 8e-20
Identities = 58/276 (21%), Positives = 96/276 (34%), Gaps = 54/276 (19%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
K ILK ++ ++ + L+GP +GKTT L ++ + PS SG VT G N+ E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 193 PQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDI 250
+ + +Y+ + M E L F A S E + +
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA----------SSSSEIEEMV------ 114
Query: 251 DVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGP 310
+ ++ GL V S G +++ L+
Sbjct: 115 ------------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVN 151
Query: 311 ALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370
+DE ++GLD ++ L+Q G ++ E L D I LI G
Sbjct: 152 PRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNG 209
Query: 371 QIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVT 406
IV G E + E K + + + +EV
Sbjct: 210 TIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 103 bits (258), Expect = 6e-25
Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 27/218 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 912 RIS-----------GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMEL 960
Q+ ++TV E+++ + R + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKYLAK 135
Query: 961 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
++ + G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 81.0 bits (200), Expect = 3e-17
Identities = 53/287 (18%), Positives = 100/287 (34%), Gaps = 66/287 (22%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+LK V+ + + ++G SGK+T L + PS G + NG N++
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVR 70
Query: 193 PQ----------------RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELS 236
+ + QH MTV E + + ++ LS
Sbjct: 71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI---------QVLGLS 121
Query: 237 RREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296
+ + +K LA +G+D A + +SGG
Sbjct: 122 KHDARERA---------LKYLAK---------------VGIDERAQ----GKYPVHLSGG 153
Query: 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356
Q++RV+ L L DE ++ LD +++ ++Q+ G ++ +
Sbjct: 154 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGF 211
Query: 357 TYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQ 403
+ +I + +G+I +G E V F P+ + FL+
Sbjct: 212 ARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 102 bits (255), Expect = 3e-24
Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 23/203 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L ++ G + A+ G +G+GKT+L+ ++ G + G I + ++
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV------------ 99
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
+C Q P T+ E++++ + ++ + ++ + +++G
Sbjct: 100 --SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 154 -EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 1033 CTIHQPSIDIFEAFDELFLMKRG 1055
+ D++ ++ +G
Sbjct: 213 LVTSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.1 bits (226), Expect = 2e-20
Identities = 46/248 (18%), Positives = 87/248 (35%), Gaps = 52/248 (20%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
+LK++N ++ + + G SGKT+LL+ + G+L+ S G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--VSFCSQ- 104
Query: 196 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMK 255
I T++E + F K ++ D
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQQD-------- 140
Query: 256 ALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALF 315
+ +T++G+ + +SGGQR R++ + A
Sbjct: 141 ------------------ITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 316 MDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQ 375
+D LD T Q+ S + ++ I L+ E D I+++ +G F
Sbjct: 182 LDSPFGYLDVFTEEQVFESC--VCKLMANKTRI-LVTSKMEHLRKADKILILHQGSSYFY 238
Query: 376 GPREHVLE 383
G +
Sbjct: 239 GTFSELQS 246
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99.6 bits (248), Expect = 3e-24
Identities = 35/187 (18%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP 974
+ + I ++V + L A L + + + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK----- 122
Query: 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1033
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1034 TIHQPSI 1040
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 73.8 bits (181), Expect = 2e-15
Identities = 32/215 (14%), Positives = 74/215 (34%), Gaps = 47/215 (21%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
+L+ + ++ + GP GKTTLL ++ L P G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 195 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
++ + + +++V + L A GV + +++
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 255 KALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALAL 314
++ + + L +S G +RV L+ A
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 315 FMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVIS 349
+D+ +D + +++ S+ +I+ + S
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 182
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 100 bits (251), Expect = 4e-24
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
LN VS G + ++G SGAGK+TL+ + R T G + +++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 912 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
R G Q+ + TV+ ++ L + + + + E++ LV L S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY 137
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1029
S LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 P-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 1030 TVVCTIHQPSIDIFEAFDELFLMKRG 1055
T++ H+ + + D + ++ G
Sbjct: 193 TILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 51/280 (18%), Positives = 92/280 (32%), Gaps = 57/280 (20%)
Query: 128 PSRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187
+ L +V+ V ++ ++G +GK+TL+ + P+ G V +G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 188 MDEFVPQRTA------AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKD 241
+ I QH + TV +A + E
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PKDEVK 118
Query: 242 ANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRV 301
+ ++ ++GL D+ + +SGGQ++RV
Sbjct: 119 RRV------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 302 TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361
L L DE ++ LD +TT I+ L+ I L T ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRIC 208
Query: 362 DDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADF 401
D + +IS G+++ Q V F PK F
Sbjct: 209 DCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 4e-23
Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 23/231 (9%)
Query: 828 TFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887
TF ++ + D V+L+ ++ + + G + ++G SG+GK+TL ++
Sbjct: 3 TFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 888 RKTGGYITGNIKISGYP---KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944
+ I G+ R G Q D N ++ +++ +
Sbjct: 52 FYIPENGQ--VLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMS 105
Query: 945 VDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004
V+ L + + + + +GLS QR+R+ IA LV NP I+ DE
Sbjct: 106 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
TS LD + ++MR + + GRTV+ H+ S + D + +M++G
Sbjct: 166 ATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.7 bits (199), Expect = 3e-17
Identities = 52/257 (20%), Positives = 95/257 (36%), Gaps = 45/257 (17%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
+ IL ++N +K + ++G SGK+TL + P +G+V +GH++
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLA 68
Query: 190 EFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP 246
P R + Q D + ++ + ++ + V ++ K A
Sbjct: 69 LADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVE-------KVIYAAKLAGAH- 119
Query: 247 DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
+ + E G+SGGQR+R+
Sbjct: 120 --------------------------DFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 153
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366
LV L DE ++ LD + I+ ++ + I G VI + T D II+
Sbjct: 154 LVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIV 209
Query: 367 ISEGQIVFQGPREHVLE 383
+ +G+IV QG + +L
Sbjct: 210 MEKGKIVEQGKHKELLS 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.0 bits (244), Expect = 5e-23
Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 24/233 (10%)
Query: 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886
L F +V ++ ++ L ++ G AL+G SG+GK+T+ ++
Sbjct: 14 LEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 887 GRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
G+I + G+ ++ + QN +
Sbjct: 63 RFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 944 DVDSETRRMFLEEIMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002
++ R M+ + +++G G LS QR+R+ IA L+ + I+ +
Sbjct: 121 QIEEAARM---AYAMDFINKMDNGLDTIIGENG-VLLSGGQRQRIAIARALLRDSPILIL 176
Query: 1003 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
DE TS LD + + + + RT + H+ S E DE+ +++ G
Sbjct: 177 DEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 86.1 bits (213), Expect = 5e-19
Identities = 52/255 (20%), Positives = 104/255 (40%), Gaps = 42/255 (16%)
Query: 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE 190
++ L+++N + + L+G SGK+T+ + D G + +GH++ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 191 FVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248
+ R + +VH+ TV +A Y E SR + + +
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIA-----------YARTEEYSREQIEEAAR--- 127
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308
A A + + +D DT++G E +SGGQR+R+ L+
Sbjct: 128 ------MAYAMD------------FINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALL 168
Query: 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368
+ L +DE ++ LD+ + I +L + + + ++ T + D+I+++
Sbjct: 169 RDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVE 224
Query: 369 EGQIVFQGPREHVLE 383
+G IV +G +L
Sbjct: 225 DGIIVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (239), Expect = 1e-22
Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 25/210 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNIKISGYPKKQETFAR 912
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LAL 72
Query: 913 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
Y Q V+ L + TR L ++ + L+
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRSTN 124
Query: 973 LPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 125 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G +V + H + +L+K G
Sbjct: 180 QQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 80.4 bits (198), Expect = 3e-17
Identities = 48/261 (18%), Positives = 85/261 (32%), Gaps = 60/261 (22%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+ T L ++G V+ + L+GP +GK+TLL +AG + G + + G ++ +
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWS 66
Query: 193 PQRTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPD 249
+ A AY+SQ V L
Sbjct: 67 ATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---------------------------- 98
Query: 250 IDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG 309
+ + + + V L LD +SGG+ +RV +++
Sbjct: 99 -----------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQ 142
Query: 310 PALA-------LFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362
L +DE LD + + L + G A++ T
Sbjct: 143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAH 200
Query: 363 DIILISEGQIVFQGPREHVLE 383
L+ G+++ G RE VL
Sbjct: 201 RAWLLKGGKMLASGRREEVLT 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 96.0 bits (239), Expect = 2e-22
Identities = 48/239 (20%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 820 LPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 879
+ + + + V + + D++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 880 TLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYS 936
TL++++ T G I I + R Q D + TV E++L
Sbjct: 59 TLINLIPRFYDVTSGQILIDGHNIKDFLTG---SLRNQIGLVQQDNILFSDTVKENILLG 115
Query: 937 AWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 996
+V + + + P LS Q++RL+IA + N
Sbjct: 116 RPTATDEEVVEAAKMA---NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172
Query: 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
P I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 173 PPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 95.6 bits (238), Expect = 3e-22
Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 43/256 (16%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
+ ILKD+N ++ +G GK+TL+ + D + SG++ +GHN+
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIK 83
Query: 190 EFVPQRTAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+F+ I Q D + TV+E + G E+ K AN
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF 136
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
++ L DT VG E +SGGQ++R++ +
Sbjct: 137 --------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIF 169
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367
+ L +DE ++ LD + I +L + + T +I + T D I++I
Sbjct: 170 LNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVI 225
Query: 368 SEGQIVFQGPREHVLE 383
G IV G ++
Sbjct: 226 ENGHIVETGTHRELIA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.8 bits (233), Expect = 1e-21
Identities = 48/264 (18%), Positives = 103/264 (39%), Gaps = 45/264 (17%)
Query: 131 KKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE 190
+ +L+ + ++P +T L+GP SGK+T+ L P+ G++ +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 191 FVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+ + R A + Q + + +++E +A+ +
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
P ++ A G + + GL DT V E +SGGQR+ V L
Sbjct: 116 PTMEEITAAAVKSGAHS--------FISGLPQGYDTEVD-EAGSQLSGGQRQAVALARAL 166
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367
+ L +D+ ++ LD+++ Q+ L + + + ++ + D I+ +
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 368 SEGQIVFQGPREHVLE---FFKSM 388
G I G + ++E + +M
Sbjct: 225 EGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 21/234 (8%)
Query: 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 885
+ F+DV ++ ++ + L G++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 11 LVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 886 AG--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942
+ TGG + + Y + R Q + ++ E++ Y L
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQ-EPQVFGRSLQENIAY--GLTQK 115
Query: 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002
P ++ T + P S LS QR+ + +A L+ P ++ +
Sbjct: 116 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 175
Query: 1003 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
D+ TS LDA + V + + + + R+V+ S + E D + ++ G
Sbjct: 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGG 227
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 90.0 bits (223), Expect = 2e-20
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQET 909
++V+ ++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 910 FARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
A G Q+ P+++V E++ + L E + ++ E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD 125
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1027
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1028 GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
GRT++ H D EA D++ ++ G
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.1 bits (205), Expect = 3e-18
Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 52/271 (19%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+ + KD+N + + +GP GK+TLL +AG + SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 193 PQRTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDID 251
P + Q ++V E ++F + G + + +
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----------KKEVINQRV------- 111
Query: 252 VFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA 311
+ V +VL L D +SGGQR+RV G LV
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 312 LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371
+DE + LD++ Q+ + ++ L T + E L D I+++ G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 372 IVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
+ G + + P + VA F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.5 bits (222), Expect = 3e-20
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 27/234 (11%)
Query: 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886
L+ V ++ D D + +L +S +P + A G SG GK+T+ +L
Sbjct: 2 LSARHVDFAYD-----------DSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Query: 887 G--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943
+ T G IT I + + G+ Q+ T+ E+L Y L
Sbjct: 50 RFYQPTAGEITIDGQPIDNISLEN--WRSQIGFVSQDSAIMAG-TIRENLTY----GLEG 102
Query: 944 DVDSETRRMFLE--EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001
D E L+ VE P + + +S QR+RL IA + NP I+
Sbjct: 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+DE T+ LD+ + ++V + + + + GRT + H+ S D+++ +++G
Sbjct: 163 LDEATASLDSESESMVQKALDS-LMKGRTTLVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.1 bits (213), Expect = 4e-19
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 42/251 (16%)
Query: 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ 194
IL+D++ +P+ + GP GK+T+ L P+ +G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 195 RTAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+ I D I T+RE L + +++L+ PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
+T VG E ISGGQR+R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
L +DE + LDS + + +L ++ T ++ + T D I I +GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQI 215
Query: 373 VFQGPREHVLE 383
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.9 bits (215), Expect = 2e-19
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ 907
++ + +S + G L+G SG GKTT + ++AG + G I K+ P+K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 908 ETFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN 964
Q+ P++TVY+++ + LR V + + E+ EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLT 130
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1025 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1055
G T + H D EA D + +M RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 79.6 bits (196), Expect = 6e-17
Identities = 55/270 (20%), Positives = 99/270 (36%), Gaps = 44/270 (16%)
Query: 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV 192
+ T +++++ VK +LLGP GKTT L +AG +PS G++ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVA--- 68
Query: 193 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
++ D I + L + L ++ R+E D +
Sbjct: 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-------- 120
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
V ++LGL + + +SGGQR+RV G +V
Sbjct: 121 ----------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQ 159
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
MDE + LD+ ++ L+++ L T + E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVL 218
Query: 373 VFQGPREHVLEFFKSMGFECPKRKGVADFL 402
G + V ++ P VA F+
Sbjct: 219 QQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.3 bits (213), Expect = 4e-19
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 14/210 (6%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQE 908
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + ++ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 909 T--FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL 966
R G Q PN+T +E++ + + E R +EE+ ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 967 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1025
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G T++ H P+ DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.1 bits (197), Expect = 4e-17
Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 57/279 (20%)
Query: 130 RKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD 189
+K K L +VN ++ +LGP +GKTT + +AG PS +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 190 EFVPQ------RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDAN 243
R + Q +T E +AF + R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKR--- 120
Query: 244 IKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTT 303
+ V K+L + + R +SG Q++RV
Sbjct: 121 ------------------------VEEVAKILDIHHVLNHFP-----RELSGAQQQRVAL 151
Query: 304 GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363
LV L +DE + LD+ ++++ L T ++ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 364 IILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
+ ++ +G++V G E + ++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 78.2 bits (192), Expect = 2e-16
Identities = 57/275 (20%), Positives = 106/275 (38%), Gaps = 57/275 (20%)
Query: 131 KKKF--TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188
+K+ L +++ V+ ++LGP +GKT L +AG P SGR+ +G ++
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 189 DEFVPQR-TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPD 247
+ P++ A++ Q+ M V++ L F R + + +R D
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT----- 111
Query: 248 PDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307
+ L ++ D +SGG+++RV L
Sbjct: 112 ------------------------ARDLKIEHLLDRNP-----LTLSGGEQQRVALARAL 142
Query: 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367
V L +DE + LD T + + ++H N V+ + E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201
Query: 368 SEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
+G+++ G E + FE P VA F+
Sbjct: 202 MDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 74.3 bits (182), Expect = 3e-15
Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG-YPKKQETFARI 913
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
+ QN P++ V ++L + ++ + + +++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1032
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1033 CTIHQPSIDIFEAFDELFLMKRG 1055
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.4 bits (172), Expect = 9e-14
Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 55/252 (21%)
Query: 152 LLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTA-AYISQHDVHIGEM 210
LLGP +GK+ L +AG + P G V NG ++ P+R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDY 270
+V +A+ R R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 271 VIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQ 330
+ + D +SGG+R+RV LV L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 331 IVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGF 390
++ LR + + + E L D++ ++ G+IV +G + +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 391 ECPKRKGVADFL 402
K VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.9 bits (168), Expect = 3e-13
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Query: 864 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFARISGYCEQN 920
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 921 DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980
P+++VY ++ Y +V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1039
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1040 IDIFEAFDELFLMKRG 1055
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 22/201 (10%), Positives = 45/201 (22%), Gaps = 42/201 (20%)
Query: 869 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSP 925
+ G G GKTTL+ + ++ G+ T ++ K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1045
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1046 FDELFLMKRGGYEIYVGPLGR 1066
E+ + I + P R
Sbjct: 146 VKEIRRLPGAVL-IELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.1 bits (100), Expect = 7e-05
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 151 LLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 210
++ G P GKTTL+ + +L + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 211 TVRETLAFSARCQGVGSRYDML 232
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 6e-04
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 11/125 (8%)
Query: 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 994
+A L + + + + L + G V+ L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF---L 1051
+DE + LD + +R + + + +FE D L
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVYR 410
Query: 1052 MKRGG 1056
++
Sbjct: 411 QQQEN 415
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.1 bits (87), Expect = 0.002
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 147 SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVH 206
+L ++ GP GK+T LA +LD S + G + + P + ++ +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 207 IGEM 210
I ++
Sbjct: 62 ITDL 65
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 0.003
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 147 SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQR 195
SR ++ GP +GK+TLL L + S S T E +
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKD 49
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 37.7 bits (86), Expect = 0.004
Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 6/119 (5%)
Query: 147 SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQH--- 203
+R+ +L G ++GK+ ++ L L G + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 204 ---DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALAT 259
+ G D + ++ D+DV +
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.004
Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 22/150 (14%)
Query: 140 VNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAY 199
+ +V + L+ P +GK+ L L LA + + ++
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQ----------IAGGPDLLEVGELPTGPVI 71
Query: 200 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALAT 259
+ + R +G+ R+ + P I +A
Sbjct: 72 YLPAEDPPTAI--------HHRLHALGAHLS---AEERQAVADGLLIQPLIGSLPNIMAP 120
Query: 260 EGQEASVVTDYVIKVLGLDVCADTMVGDEM 289
E + +++ LD + +E
Sbjct: 121 EWFDGLKRAAEGRRLMVLDTLRRFHIEEEN 150
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1425 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.72 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.35 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.26 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.24 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.89 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.85 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.79 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.6 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.42 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.38 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.05 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.43 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.41 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.31 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.1 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.79 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.49 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.28 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.1 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.09 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.05 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.03 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.93 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.9 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.83 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.82 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.76 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.73 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.69 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.69 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.61 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.56 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.54 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.46 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.44 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.42 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.4 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.18 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.17 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.14 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.13 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.09 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.98 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.95 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.94 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.87 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.84 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.8 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.79 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.77 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.67 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.67 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.65 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.64 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.6 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.6 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.58 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.57 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.5 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.49 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.42 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.37 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.34 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.32 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.23 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.2 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.16 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.15 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.12 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.1 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.1 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.04 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.0 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.99 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.94 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.93 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.89 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.86 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.84 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.84 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.82 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.78 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.75 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.75 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.74 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.67 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.66 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.64 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.61 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.61 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.57 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.55 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.49 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.47 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.45 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.42 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.39 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.36 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.36 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.35 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.33 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.33 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.32 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.31 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.31 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.26 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.23 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.22 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.18 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.16 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.13 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.12 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.11 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.09 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.97 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.97 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.95 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.92 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.82 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.82 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.82 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.82 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.79 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.67 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.67 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.56 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.55 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.53 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.52 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.45 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.45 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.41 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.33 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.18 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.16 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.12 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.1 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.01 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.99 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.96 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.82 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.79 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.73 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.71 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.65 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.61 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.58 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.57 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.41 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.4 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.33 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.33 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.26 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.22 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.19 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.16 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.12 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.07 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.01 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.0 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.97 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.97 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.93 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.88 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.87 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.73 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.72 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.71 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.68 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.65 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.61 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.53 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 90.43 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.43 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.35 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.32 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.22 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.19 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.14 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.14 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.13 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.12 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.07 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.04 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.04 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.96 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.96 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.96 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.95 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.9 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.89 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.86 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.84 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.84 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.64 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.59 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.55 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.53 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.52 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.52 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.47 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.47 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.43 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.28 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.25 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.19 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.13 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.12 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 89.06 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.04 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.03 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.02 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.99 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.99 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.96 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.87 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.85 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.78 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.78 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.78 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.75 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.6 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.57 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.55 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.49 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.47 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.45 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.41 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.35 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.34 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.21 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.21 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.18 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.12 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.09 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.05 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.0 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.99 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.91 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.91 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.81 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.79 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.73 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.72 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.72 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.7 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.64 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.63 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.62 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.47 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.42 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.37 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.19 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.19 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 87.16 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.14 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.07 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.99 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.94 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.9 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.89 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.85 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.85 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 86.82 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.82 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.75 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.72 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.69 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.68 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.66 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.57 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.57 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.51 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.51 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.48 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.46 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.42 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.35 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.33 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.31 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.3 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.28 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.25 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.05 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.05 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.95 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.93 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.89 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 85.88 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.87 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.86 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.81 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.79 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.77 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.75 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.71 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.54 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.49 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.43 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.36 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.25 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.06 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 85.03 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 84.79 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.73 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.69 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.63 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 84.53 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.5 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.27 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.25 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.23 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.13 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.09 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.06 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 84.03 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.95 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.89 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.73 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 83.71 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.54 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.52 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.49 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.32 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.29 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.24 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.08 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.03 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.02 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.01 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 82.96 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 82.91 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 82.89 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.85 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 82.78 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.69 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.67 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.56 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.56 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.55 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.53 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.5 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.43 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 82.37 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 82.3 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 81.95 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 81.82 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.58 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.56 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.2 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.11 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.58 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 80.23 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.19 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.13 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-47 Score=411.73 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=151.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 211 (1425)
++++|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++.+..+ +|.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 457999999999999999999999999999999999999999 9999999999987654 467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.|+..+.+.. .++.+.+++++++.++|++..|..+.
T Consensus 89 v~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~----- 129 (232)
T d2awna2 89 VAENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKPK----- 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhCCChhhhhCChh-----
Confidence 999999987655421 12234568889999999988876664
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..+.| ++.++|+..++.++||||++|++|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~t-ii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCE-EEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCE
Confidence 599999999999999999999999999999999999999999999998765555 5557899999999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
|+++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.6e-46 Score=410.28 Aligned_cols=208 Identities=25% Similarity=0.391 Sum_probs=178.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 211 (1425)
++++|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.+++.+|
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 94 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 94 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccch
Confidence 356999999999999999999999999999999999999998 9999999999987654 467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.|+++.++.. ..+.+.+++++++.+||++..|..+ .
T Consensus 95 v~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 135 (239)
T d1v43a3 95 VYENIAFPLKIKKFP----------------------------------KDEIDKRVRWAAELLQIEELLNRYP-----A 135 (239)
T ss_dssp HHHHHHTTCC--CCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCT-----T
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhcCCh-----h
Confidence 999999987665421 1233456889999999998777554 5
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++++.++++.+..+.| ++.++|+..++.++||||++|++|+
T Consensus 136 ~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-ii~vTHd~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999998766555 5557999999999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
|+++|+++++.+
T Consensus 215 iv~~G~~~el~~ 226 (239)
T d1v43a3 215 LLQIGSPTEVYL 226 (239)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEcCHHHHHh
Confidence 999999999853
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-45 Score=404.56 Aligned_cols=208 Identities=27% Similarity=0.386 Sum_probs=183.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEccCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYISQHDV 205 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~ 205 (1425)
+.++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.
T Consensus 15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (240)
T d1g2912 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchh
Confidence 356999999999999999999999999999999999999998 999999999875432 1467999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+++.+||+||+.|+.+.++.. ..+.+.+++++++.+||++..|..+
T Consensus 92 L~~~ltV~eni~~~~~~~~~~----------------------------------~~e~~~~v~~~l~~~~l~~~~~~~p 137 (240)
T d1g2912 92 LYPHMTVYDNIAFPLKLRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKP 137 (240)
T ss_dssp CCTTSCHHHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCG
T ss_pred hcchhhhhHhhhhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhcCCh
Confidence 999999999999987765421 1223456889999999998877655
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+..+ ++++.++|+.+++.++||||+
T Consensus 138 -----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHd~~~~~~~~drv~ 211 (240)
T d1g2912 138 -----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIA 211 (240)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccC-CEEEEEcCCHHHHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999977655 555558999999999999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 047682 366 LISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~ 383 (1425)
+|++|++++.|+++++.+
T Consensus 212 vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 212 VMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999999853
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7e-46 Score=405.40 Aligned_cols=208 Identities=22% Similarity=0.299 Sum_probs=183.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------ccceEEEEccCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQRTAAYISQHDVH 206 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 206 (1425)
+.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 457999999999999999999999999999999999999998 999999999875422 14679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
+|.+||+||+.|+.+..+.. ..+.+.+++++++.+||++..|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMS----------------------------------KEEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cccccHHHHhhhhhHhhcCC----------------------------------HHHHHHHHHHHHhhcChHhhhhCChh
Confidence 99999999999987654321 12234568899999999888776654
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
.|||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.++.+.| ++.++|+..++.++||||++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~t-vi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCE-EEEEECCHHHHHHhCCEEEE
Confidence 599999999999999999999999999999999999999999999997765554 55589999999999999999
Q ss_pred EcCCeEEEecChhHHHH
Q 047682 367 ISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~~ 383 (1425)
|++|+|++.|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999853
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.7e-46 Score=405.95 Aligned_cols=214 Identities=22% Similarity=0.346 Sum_probs=185.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++.+++ ++.+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEEcceec
Confidence 478899988773 46799999999999999999999999999999999998763 589999999986
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...+|.+|||+|++.++|.+||+||+.|.+.++ ..+.++.+++++++++.++|.+.+|.. +..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 54 334567999999999999999999999877554 467788888999999999999988876 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++|||+. ++.++||||++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999755 999999999997 68899999999997 78999998
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-46 Score=406.56 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=154.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++++++ ++.+|+||||+|++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 46788888773 4679999999999999999999999999999999999876 35899999999875
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 QE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.. ..+|.+|||+|++.+++.+||+||+.|...++ ..+.++.+++++++++.++|.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 42 34577999999999999999999999987655 3455667788999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|.|||++||++. ++.++|||+++|++ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999999999999864 5999999999986 68889999999996 799999987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1e-45 Score=401.47 Aligned_cols=202 Identities=23% Similarity=0.352 Sum_probs=181.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+..+ ++.+|||+|++.+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 3899999999999999999999999999999999999998 9999999999987665 36799999999999999999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.|+.+.++... ..+++++++.+||.+..|..++ .|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GS
T ss_pred HHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCChh-----hC
Confidence 99999876554211 2246778899999988876654 59
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 373 (1425)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+..+ ++|+.++|+..++.++||||++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCC-cEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999977654 55555899999999999999999999999
Q ss_pred EecChhHHH
Q 047682 374 FQGPREHVL 382 (1425)
Q Consensus 374 ~~G~~~~~~ 382 (1425)
++|+++++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.1e-45 Score=402.38 Aligned_cols=214 Identities=26% Similarity=0.345 Sum_probs=192.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++++++ ++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 478899988873 4579999999999999999999999999999999999876 3589999999875
Q ss_pred Ccc-------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 906 KQE-------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 906 ~~~-------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
... ..+|.+|||+|++.++|.+||+||+.|...++ ..+.++.+++++++++.++|.+.++.. +..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhh
Confidence 321 12567999999999999999999999998776 456788888999999999999988876 457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||||||++|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |.|||++||+++ ++..+||||++|++ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999766 999999999986 68889999999996 79
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-45 Score=403.89 Aligned_cols=216 Identities=27% Similarity=0.397 Sum_probs=192.2
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++++++ .++..+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-----------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC--CCceEEECCEEe
Confidence 478899998884 1346799999999999999999999999999999999997663 589999999875
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 906 KQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 906 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
.. ...+|.+|||+|++.++|.+||+||+.|....+ ..+.++.+++++++++.+||++..|... ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 32 223567999999999999999999999986543 5677888899999999999999888874 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999655 999999999997 68899999999997 689
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEEcCH
Confidence 999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-45 Score=402.53 Aligned_cols=206 Identities=23% Similarity=0.323 Sum_probs=183.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDVH 206 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 206 (1425)
..++|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l 93 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCC
T ss_pred eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhcccccccccccc
Confidence 456999999999999999999999999999999999999998 9999999999876553 2579999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.|+.+..+... ++...+++++|+.+||++.+|..+
T Consensus 94 ~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~- 138 (240)
T d3dhwc1 94 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP- 138 (240)
T ss_dssp CTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB-
T ss_pred CCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999999887654311 123456788999999998877655
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.+.| ++.++|+..++..+||||++
T Consensus 139 ----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~t-vi~vTHdl~~~~~~~dri~v 213 (240)
T d3dhwc1 139 ----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAV 213 (240)
T ss_dssp ----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCE-EEEEBSCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCE-EEEEcCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999998765544 55589999999999999999
Q ss_pred EcCCeEEEecChhHH
Q 047682 367 ISEGQIVFQGPREHV 381 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~ 381 (1425)
|++|+|++.|+++++
T Consensus 214 l~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 214 ISNGELIEQDTVSEV 228 (240)
T ss_dssp EETTEEEEEEETTTT
T ss_pred EECCEEEEECCHHHH
Confidence 999999999999988
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-45 Score=400.43 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=191.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++++++.. ....++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 5788998877521 123468999999999999999999999999999999999876 35899999999853
Q ss_pred c---c---cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 Q---E---TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 ~---~---~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. . .++|.+|||+|++.+++.+||+||+.|...++ ..+.++.+++++++++.+||.+..|... ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1 24467999999999999999999999988765 3456677788999999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
|||||||+|||||+.+|++|||||||+|||+.++..|++.|+++.++ |.|||++|||+. ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999766 999999999986 57889999999997 7999
Q ss_pred EECCCC
Q 047682 1060 YVGPLG 1065 (1425)
Q Consensus 1060 y~G~~~ 1065 (1425)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
Confidence 999984
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.1e-45 Score=395.26 Aligned_cols=219 Identities=23% Similarity=0.354 Sum_probs=189.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++++|+.. .....+|+||||+|++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 5788998887532 123468999999999999999999999999999999999766 35899999999864
Q ss_pred cc---c---c-cceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCc
Q 047682 907 QE---T---F-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSG 978 (1425)
Q Consensus 907 ~~---~---~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~ 978 (1425)
.. . + ++.+|||+|++.++|.+||+||+.++...+.....+.+++++.+.++++.++|.+ ..+.. +..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-----hhh
Confidence 31 1 1 3469999999999999999999999988776666778888888999999999975 45654 457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
|||||||||+|||||+.+|++|+|||||||||+.++..|++.|+++.++ |+|||++||+++ +.++||||++|++ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 4589999999997 68
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9998864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-44 Score=393.19 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=184.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++++++ + .+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCCEEEEccEecc
Confidence 57788888773 1 389999999999999999999999999999999998663 5899999999875
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|++.++|.+||+||+.|+..++.. .. +++++++++.++|.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhccc---cH---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 4 23456799999999999999999999999877632 22 235889999999999988774 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|.|||++||++. ++.++||||++|++ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999865 4999999999997 68899999999997 689999986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.4e-44 Score=387.27 Aligned_cols=205 Identities=21% Similarity=0.275 Sum_probs=173.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc-------ceEEEEccCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ-------RTAAYISQHDV 205 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~d~ 205 (1425)
...+|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.....+ +.+|||+|++.
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~ 93 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecchh
Confidence 346899999999999999999999999999999999999998 99999999999876542 45999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV-CADTM 284 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~ 284 (1425)
+++.+||+||+.++...+..+.. +..+...++.+.|+.+||++ .++..
T Consensus 94 l~~~~tv~eni~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~L~~~~~~~~ 142 (230)
T d1l2ta_ 94 LIPLLTALENVELPLIFKYRGAM-------------------------------SGEERRKRALECLKMAELEERFANHK 142 (230)
T ss_dssp CCTTSCHHHHHHHHHHTCCSSCC-------------------------------CHHHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred hCcCccHHHHHhHHHHHhccCCC-------------------------------CHHHHHHHHHHHHHhhchhhhhhcCC
Confidence 99999999999998765432211 01122345677899999975 35544
Q ss_pred ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 285 VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 285 vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
+..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+..+.| +|.++|+..++ ++||||
T Consensus 143 -----p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~t-ii~vTHd~~~a-~~~drv 215 (230)
T d1l2ta_ 143 -----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKT-VVVVTHDINVA-RFGERI 215 (230)
T ss_dssp -----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE-EEEECSCHHHH-TTSSEE
T ss_pred -----hhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCE-EEEECCCHHHH-HhCCEE
Confidence 45699999999999999999999999999999999999999999999998765544 45467777654 899999
Q ss_pred EEEcCCeEEEecCh
Q 047682 365 ILISEGQIVFQGPR 378 (1425)
Q Consensus 365 ilL~~G~iv~~G~~ 378 (1425)
++|++|+|+++|+.
T Consensus 216 ~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 216 IYLKDGEVEREEKL 229 (230)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEECCEEEEeccC
Confidence 99999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-43 Score=388.50 Aligned_cols=214 Identities=24% Similarity=0.328 Sum_probs=192.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+..+|++.++ +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECcEec
Confidence 37788998877 346899999999999999999999999999999999998763 589999999986
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.+ ...++.+|||||++.+++++|+.||+.|.+.++ ..+..+.++.++++++.++|.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHH
Confidence 43 245678999999999999999999999988776 3456667788999999999999888874 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++|||+|+++|+||+|||||+|||+.++..++++|++++++|+|||++||+++ ++...||||++|++ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999989999999999997 68889999999996 78999998
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
+
T Consensus 217 ~ 217 (238)
T d1vpla_ 217 V 217 (238)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.4e-43 Score=384.22 Aligned_cols=210 Identities=25% Similarity=0.393 Sum_probs=181.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHH
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|||++++ +|+++|+||||||||||+++|+|+++|+ +|+|.+||+++....+ ++.+|||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999998 9999999999987655 477999999999999999999999
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
|+.+.. .+ .+.+.+++++++.+||++..|..+ +.|||||
T Consensus 93 ~~l~~~------------~~------------------------~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV------------ER------------------------VERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131 (240)
T ss_dssp TTCTTS------------CH------------------------HHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHH
T ss_pred hhhccc------------CH------------------------HHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHH
Confidence 975311 01 122346788999999998877655 4699999
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecC
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGP 377 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 377 (1425)
||||+|||||+.+|++|+|||||+|||+.++..+++.++++++..+.| ++.++|+..++.++||||++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t-vi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999998765555 5557999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCHHHHHH
Q 047682 378 REHVLEFFKSMGFECPKRKGVADFLQ 403 (1425)
Q Consensus 378 ~~~~~~~F~~~G~~~p~~~~~ad~l~ 403 (1425)
++++.+ |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHhc---------CCCHHHHHHhC
Confidence 999964 33445666654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-42 Score=382.61 Aligned_cols=209 Identities=25% Similarity=0.402 Sum_probs=169.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 209 (1425)
...+|+||||+|++||.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+| .
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-N 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-T
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-C
Confidence 346999999999999999999999999999999999999998 9999999999987764 47899999987654 6
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
.||+|||.++... .+.+...++....+. .. ..-.++...+|.+|+.+
T Consensus 91 ~Ti~eNi~~~~~~-------------------------~~~~~~~~~~~~~~~------~~--~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 91 RSIIDNISLANPG-------------------------MSVEKVIYAAKLAGA------HD--FISELREGYNTIVGEQG 137 (241)
T ss_dssp SBHHHHHCTTSTT-------------------------CCHHHHHHHHHHHTC------HH--HHTTSTTGGGSBCSTTT
T ss_pred ccccccccccCcc-------------------------ccHHHHHHHHHHHhh------HH--HHHhhhcchhhhcCCCC
Confidence 7999999986321 111111111111100 01 12345677889998765
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|+ ++|+.. ..+.||+|++|++
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~-~~~~~D~i~vl~~ 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVII-IAHRLS-TVKNADRIIVMEK 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEE-ECSSGG-GGTTSSEEEEEET
T ss_pred -CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEE-EECCHH-HHHhCCEEEEEEC
Confidence 56999999999999999999999999999999999999999999999854 555554 677665 4578999999999
Q ss_pred CeEEEecChhHHHH
Q 047682 370 GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 G~iv~~G~~~~~~~ 383 (1425)
|+|+++|+++++++
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999974
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-42 Score=385.38 Aligned_cols=214 Identities=21% Similarity=0.253 Sum_probs=186.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|++.+++ +..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEec
Confidence 78889987763 45799999999999999999999999999999999997763 5899999998763
Q ss_pred cc----------------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-ccc
Q 047682 907 QE----------------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQS 969 (1425)
Q Consensus 907 ~~----------------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~ 969 (1425)
.. ..++.+|||+|++.+++.+||.||+.+..... ...+..+.++++.++++.++|.+. .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 21 23467999999999999999999999864322 235667778889999999999764 344
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 970 ~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
. +..|||||||||+|||+|+.+|++|+|||||+|||+.++..|++.|++++++|+|||++|||+. ++..+||||
T Consensus 146 ~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 Y-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred C-----cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 3 3579999999999999999999999999999999999999999999999989999999999997 688899999
Q ss_pred EEEeCCcEEEEECCC
Q 047682 1050 FLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1050 ~~l~~Gg~~~y~G~~ 1064 (1425)
++|++ |++++.|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEEcCH
Confidence 99997 789999987
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.1e-42 Score=381.90 Aligned_cols=205 Identities=23% Similarity=0.351 Sum_probs=175.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc----ceEEEEccCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ----RTAAYISQHDVHIG 208 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 208 (1425)
.+++|+||||+|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.....+ ..++|++|+..+++
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCC
Confidence 456999999999999999999999999999999999999998 99999999998775432 34999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-CCcccccccccC
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL-GLDVCADTMVGD 287 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~ 287 (1425)
.+||+||+.+++...... ...+...+.+++.+ +|++..+..++
T Consensus 95 ~ltv~en~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDK-----------------------------------EGIKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp TSBHHHHHHGGGTTCCCS-----------------------------------SHHHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred cccHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHHHHHHhhChHHHHhCchh-
Confidence 999999999876432110 01122344455555 57777776665
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.++++++. +++|+.++|+.+++.++||||++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~--g~til~~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999653 455666899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 047682 368 SEGQIVFQGPREHVL 382 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~ 382 (1425)
++|++++.|+++++.
T Consensus 213 ~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 213 ETGQIVLEGKASELL 227 (240)
T ss_dssp ETTEEEEEEEHHHHH
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999999985
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-42 Score=380.67 Aligned_cols=210 Identities=25% Similarity=0.283 Sum_probs=183.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 209 (1425)
++++||+||||.|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.+.. .++.++||||++.++++
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCC
Confidence 4567999999999999999999999999999999999999998 999999999886532 24779999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.|.+.+.+.. ..+....++.+++.++|.+..+..++
T Consensus 90 ltv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 132 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYASS----------------------------------SSEIEEMVERATEIAGLGEKIKDRVS--- 132 (238)
T ss_dssp SBHHHHHHHHHHHHCCC----------------------------------HHHHHHHHHHHHHHHCCGGGGGSBGG---
T ss_pred ccHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHhCCCHHHHhhhhh---
Confidence 99999999987654321 11223457788999999988877665
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+|||||+++|+++||||||+|||+.++.+|.+.++++++. | ++|+.++|+.+++.++||||++|++
T Consensus 133 --~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g-~tii~~tH~l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 133 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-G-LTILVSSHNMLEVEFLCDRIALIHN 208 (238)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEEECCHHHHTTTCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-C-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998753 4 4555589999999999999999999
Q ss_pred CeEEEecChhHHHHHH
Q 047682 370 GQIVFQGPREHVLEFF 385 (1425)
Q Consensus 370 G~iv~~G~~~~~~~~F 385 (1425)
|++++.|+++++.+.|
T Consensus 209 G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 209 GTIVETGTVEELKERY 224 (238)
T ss_dssp TEEEEEEEHHHHHHHT
T ss_pred CEEEEEcCHHHHHhcc
Confidence 9999999999997643
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.8e-42 Score=382.30 Aligned_cols=215 Identities=23% Similarity=0.340 Sum_probs=184.5
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
.-++.+|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred eEEEEeeEEEEEC-------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEecccc
Confidence 3588999998773 46799999999999999999999999999999999997663 58999999998
Q ss_pred CCcc---cc-cceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCccccccccCCCCCCcC
Q 047682 905 KKQE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV-ELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 905 ~~~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~l 979 (1425)
.... .. +..++|++|+..+++.+||+||+.+.+..+. ..+..++.++++++.+ ++.+..+..+ ..|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCch-----hhC
Confidence 6532 12 3348999999999999999999988765432 2233445567777776 6777777764 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+.+ ++.++|||+++|++ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999988999999999986 68899999999997 7999
Q ss_pred EECCCC
Q 047682 1060 YVGPLG 1065 (1425)
Q Consensus 1060 y~G~~~ 1065 (1425)
+.|++.
T Consensus 219 ~~g~~~ 224 (240)
T d1ji0a_ 219 LEGKAS 224 (240)
T ss_dssp EEEEHH
T ss_pred EEcCHH
Confidence 999874
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.2e-42 Score=383.53 Aligned_cols=208 Identities=22% Similarity=0.294 Sum_probs=177.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC----------------ccce
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV----------------PQRT 196 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~~ 196 (1425)
..++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ 90 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcc
Confidence 346999999999999999999999999999999999999998 999999999985432 1257
Q ss_pred EEEEccCCCCCCCCCHHHHHHhhhh-hcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh
Q 047682 197 AAYISQHDVHIGEMTVRETLAFSAR-CQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL 275 (1425)
Q Consensus 197 ~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 275 (1425)
+|||+|++.+++.+||+||+.++.. ..+. ...+...++.++++.+
T Consensus 91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~ 136 (258)
T d1b0ua_ 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------------------------------SKHDARERALKYLAKV 136 (258)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------------------------------CHHHHHHHHHHHHHHT
T ss_pred eEEEEechhhccchhcchhhhhhHHHhcCC----------------------------------CHHHHHHHHHHHHHHc
Confidence 9999999999999999999998742 2111 0112234577889999
Q ss_pred CCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 276 GLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 276 gL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
||.+..+ ++.+..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+ .+ ++|+.++|+.+
T Consensus 137 ~l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~ 210 (258)
T d1b0ua_ 137 GIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMG 210 (258)
T ss_dssp TCCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHH
T ss_pred CCchhhh----ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cC-CceEEEeCCHH
Confidence 9976331 233456999999999999999999999999999999999999999999999975 34 55666899999
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 356 ETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 356 ~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
++..+||||++|++|+|+++|+++++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999854
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-42 Score=385.10 Aligned_cols=217 Identities=25% Similarity=0.268 Sum_probs=187.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++.+|++.+++ ..++|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 5 L~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 5 LRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDIT 69 (254)
T ss_dssp EEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC--CCcEEEECCEecc
Confidence 77889887763 46799999999999999999999999999999999998763 4899999999865
Q ss_pred ccc----ccceEEEeecCCCCCCCCCHHHHHHHHhhccC----------CCCCCHHHHHHHHHHHHHHcCCccccccccC
Q 047682 907 QET----FARISGYCEQNDIHSPNVTVYESLLYSAWLRL----------PPDVDSETRRMFLEEIMELVELNPLRQSLVG 972 (1425)
Q Consensus 907 ~~~----~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g 972 (1425)
... .++.++|++|++.+++.+||+||+.++...+. ......++..+++.++++.+++.+..|..+
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 148 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA- 148 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred chhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch-
Confidence 321 23459999999999999999999988654321 112234455667889999999999888875
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 047682 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 973 ~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l 1052 (1425)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+.+ ++.++||||++|
T Consensus 149 ----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm 223 (254)
T d1g6ha_ 149 ----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 223 (254)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred ----hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999888999999999998 688999999999
Q ss_pred eCCcEEEEECCCC
Q 047682 1053 KRGGYEIYVGPLG 1065 (1425)
Q Consensus 1053 ~~Gg~~~y~G~~~ 1065 (1425)
++ |++++.|++.
T Consensus 224 ~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 224 FN-GQIIAEGRGE 235 (254)
T ss_dssp ET-TEEEEEEESH
T ss_pred eC-CEEEEEecHH
Confidence 97 7899999874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-42 Score=384.35 Aligned_cols=220 Identities=25% Similarity=0.366 Sum_probs=183.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc----ceEEEEccCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ----RTAAYISQHDVHIG 208 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 208 (1425)
..++|+||||++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++....++ +.++|++|++..++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~ 92 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCC
Confidence 457999999999999999999999999999999999999998 99999999999876653 35999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
++||+||+.++....+..... .... ....+ ...+...+++.+++.+++.+..|+.+++
T Consensus 93 ~ltv~enl~~~~~~~~~~~~~----~~~~----~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 150 (254)
T d1g6ha_ 93 EMTVLENLLIGEICPGESPLN----SLFY----KKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAGE- 150 (254)
T ss_dssp GSBHHHHHHGGGTSTTSCHHH----HHHH----CSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CCeeeeeeeehhhhccccchh----hhhh----hcccc-------------cHHHHHHHHHHHHHhcCcchhccCchhh-
Confidence 999999999986543221100 0000 00000 1112234577889999999888877764
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.+++++. . +++|+.++|+.+++.++||||++|+
T Consensus 151 ----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 151 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred ----CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999865 3 5666668999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|+++++|+++|+.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEecHHHHhh
Confidence 999999999988753
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-42 Score=381.45 Aligned_cols=212 Identities=21% Similarity=0.361 Sum_probs=170.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 209 (1425)
+..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+| .
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~ 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-G 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-S
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhcccccccc-C
Confidence 346999999999999999999999999999999999999998 9999999999887654 47899999988766 5
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
.||+||+.++..... +.+...++... ....-...+|++..+|.+++.
T Consensus 102 ~tv~eni~~g~~~~~------------------------~~~~~~~~~~~--------~~~~~~i~~l~~g~~~~i~~~- 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKP------------------------TMEEITAAAVK--------SGAHSFISGLPQGYDTEVDEA- 148 (251)
T ss_dssp SBHHHHHHCSCSSCC------------------------CHHHHHHHHHH--------HTCHHHHHTSTTGGGCBCCSS-
T ss_pred cchhhhhhhhhcccc------------------------hHHHHHHHHHH--------HHHHHHHHhccccchhhHhcc-
Confidence 699999998743211 00011111000 000111235777788999864
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
...|||||||||+|||||+.+|+|++||||||+||+.++.+|++.|+++.+..++|+|+ ++|+.. ..+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l~-~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHLS-LVEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCHH-HHHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEE-EeCCHH-HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999886655555555 677775 5577999999999
Q ss_pred CeEEEecChhHHHH
Q 047682 370 GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 G~iv~~G~~~~~~~ 383 (1425)
|+|+++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999975
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.8e-42 Score=375.69 Aligned_cols=193 Identities=24% Similarity=0.380 Sum_probs=173.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLY 935 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~ 935 (1425)
|||+++. ||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...+|.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 689999999999999999999998763 58999999998654 3346779999999999999999999998
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~ 1015 (1425)
+. + ..+..+++++++++++.+||.+..+.. +..|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCC-----hhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 346677788899999999999988887 4579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1016 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1016 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
.+++.++++.++ |.|||++||+++ ++.++|||+++|++ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999765 999999999997 68899999999997 688999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.4e-42 Score=383.86 Aligned_cols=209 Identities=23% Similarity=0.357 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||++|+|||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+++.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 35899999999999999999999999999999999999998 9999999999887543 5789999998876654
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++...... .+...++... +...-....+++..+|.+|+.+
T Consensus 91 ti~eNi~~~~~~~~~------------------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT------------------------DEDLWQVLDL--------AFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp EHHHHTTSCTTSCSC------------------------HHHHHHHHHH--------HTCTTTTTSSTTGGGCEESTTS-
T ss_pred chhhheecccccccc------------------------hhhHHHHHHH--------HHhhhhhccCcccccccccCCC-
Confidence 999999876432110 0000000000 0000011345667789998765
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|+ ++|+...+ ..||+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~-~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLV-IAHRLSTI-VDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEE-ECCSHHHH-HHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEE-EECCHHHH-HhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999853 556555 67776555 679999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+|+++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9e-42 Score=378.80 Aligned_cols=229 Identities=23% Similarity=0.399 Sum_probs=182.6
Q ss_pred CCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCCcH
Q 047682 81 ISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGK 160 (1425)
Q Consensus 81 ~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 160 (1425)
++..+..++|+|+++.+.. .+.++|+|||++|++|+.++|+|||||||
T Consensus 10 l~~~~g~I~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGK 57 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYND--------------------------------NEAPILKDINLSIEKGETVAFVGMSGGGK 57 (255)
T ss_dssp CCCCSCCEEEEEEEECSCS--------------------------------SSCCSEEEEEEEECTTCEEEEECSTTSSH
T ss_pred CCCCCCEEEEEEEEEEeCC--------------------------------CCCcceeceEEEEcCCCEEEEECCCCCcH
Confidence 3445567999999986521 23458999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhH
Q 047682 161 TTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 237 (1425)
Q Consensus 161 STLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~ 237 (1425)
|||+++|+|+++|+ +|+|.++|+++++... ++.++||+|++.++ ..||+|||.|+...
T Consensus 58 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~--------------- 118 (255)
T d2hyda1 58 STLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPT--------------- 118 (255)
T ss_dssp HHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSS---------------
T ss_pred HHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-CCCHHHHHhccCcC---------------
Confidence 99999999999998 9999999999887653 47899999987655 67999999986321
Q ss_pred HhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEe
Q 047682 238 REKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMD 317 (1425)
Q Consensus 238 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLD 317 (1425)
.+.+.+.+++...+. .+ . ...|++..||.+|+.+ ..|||||||||+|||||+.+|++++||
T Consensus 119 ----------~~~~~~~~al~~~~l-----~~-~--i~~lp~gl~t~i~~~g-~~LSgGq~QRi~iARal~~~p~ililD 179 (255)
T d2hyda1 119 ----------ATDEEVVEAAKMANA-----HD-F--IMNLPQGYDTEVGERG-VKLSGGQKQRLSIARIFLNNPPILILD 179 (255)
T ss_dssp ----------CCHHHHHHHHHHTTC-----HH-H--HHTSTTGGGCBCCGGG-TTSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ----------CCHHHHHHHHHHhCC-----HH-H--HHhccccccchhcCCC-CCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111112222111110 01 1 1357778899999765 469999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 318 EISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 318 EptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
||||+||+.++..|++.|+++.+ ++|+|+ ++|... ....||+|++|++|+|++.|+++++++
T Consensus 180 Epts~LD~~t~~~i~~~l~~l~~--~~TvI~-itH~~~-~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 180 EATSALDLESESIIQEALDVLSK--DRTTLI-VAHRLS-TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp STTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHH-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998753 566555 566665 557899999999999999999999975
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-41 Score=377.56 Aligned_cols=230 Identities=22% Similarity=0.363 Sum_probs=181.4
Q ss_pred CCCCceeEEEeeeEEEEEEecCCCCCCCchhhHHHHHHhHhhhhccccCccccceeeeceEEEEeCCeEEEEEcCCCCcH
Q 047682 81 ISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASGK 160 (1425)
Q Consensus 81 ~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 160 (1425)
++.++.+++|+|+++.+.. ++.++|+|||++|++||+++|+|||||||
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~--------------------------------~~~~~L~~isl~i~~Ge~iaivG~sGsGK 54 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPG--------------------------------REVPALRNINLKIPAGKTVALVGRSGSGK 54 (253)
T ss_dssp CSCCCCCEEEEEEEECSSS--------------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSH
T ss_pred cCCCceEEEEEEEEEEeCC--------------------------------CCCceeeceEEEEcCCCEEEEECCCCChH
Confidence 4445668999999986521 23459999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhH
Q 047682 161 TTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 237 (1425)
Q Consensus 161 STLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~ 237 (1425)
|||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ ..|+++|+.++....
T Consensus 55 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~~~-------------- 116 (253)
T d3b60a1 55 STIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTEE-------------- 116 (253)
T ss_dssp HHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTSC--------------
T ss_pred HHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccC-CcchhhhhhhcCccc--------------
Confidence 99999999999998 9999999999987654 46799999976554 679999999863211
Q ss_pred HhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEe
Q 047682 238 REKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMD 317 (1425)
Q Consensus 238 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLD 317 (1425)
.+.+.+.+++...+ ....++ .|++..+|.+|+. ...|||||||||+|||||+.+|+||+||
T Consensus 117 ----------~~~~~i~~a~~~~~------l~~~i~--~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p~ililD 177 (253)
T d3b60a1 117 ----------YSREQIEEAARMAY------AMDFIN--KMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILILD 177 (253)
T ss_dssp ----------CCHHHHHHHHHTTT------CHHHHH--HSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ----------CCHHHHHHHHHHHh------HHHHHH--hccccchhhhcCC-CCCcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 11111122211111 011122 2566678999875 4579999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 318 EISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 318 EptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
||||+||+.++..|++.|+++.+ ++|+|+ ++|+... .+.||+|++|++|+|+++|+++++++
T Consensus 178 Epts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~-~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 178 EATSALDTESERAIQAALDELQK--NRTSLV-IAHRLST-IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGGG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHhcc--CCEEEE-EECCHHH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999853 555554 6777654 57899999999999999999999975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-41 Score=372.09 Aligned_cols=210 Identities=26% Similarity=0.421 Sum_probs=173.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++|+||+|.|+ .+.+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.++.
T Consensus 2 I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred eEEEEEEEEeC-----------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC--CCCEEEECCEEec
Confidence 78999999984 2345799999999999999999999999999999999998763 4899999999865
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------ccccccccCCCCC
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL-------NPLRQSLVGLPGV 976 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~~~~ 976 (1425)
. ..+++.+|||+|++.+++ .||+||+.+.. ...+.++ +.++++..++ ..-.++.+|.. .
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ-G 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-T
T ss_pred ccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCC-C
Confidence 4 456778999999998765 69999997642 2333333 2333333333 23345556544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|||++||+++ ..+.||+|++|++ |
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-G 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-T
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999996 4578999999996 7
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|+.
T Consensus 214 ~Iv~~G~~ 221 (241)
T d2pmka1 214 KIVEQGKH 221 (241)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7.9e-42 Score=377.70 Aligned_cols=210 Identities=27% Similarity=0.423 Sum_probs=172.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++||+|+|+ +.+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEec
Confidence 68999999884 234699999999999999999999999999999999998763 4899999999865
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-------cccccccCCCCC
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-------PLRQSLVGLPGV 976 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~~~~ 976 (1425)
. ..+++.+|||+|++.+++. ||+||+.+.. ....+.+. +++.++..++. +..++.+|.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheeccc----ccccchhh----HHHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 4567789999999988876 9999996542 12233332 33444444433 3345556543 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.+|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||++||+++ ....||+|++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 4899999999985 4467999999996 7
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
++++.|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
Confidence 99999987
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-41 Score=372.42 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=174.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++|+||+|+|+. ..++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CcCEEEECCEec
Confidence 5999999999852 1235699999999999999999999999999999999998763 589999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-----HHHHHHHcCCccccccccCCCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMF-----LEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~-----v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
.. ..+++.++||+|++.+++ .||+||+.++.. .........+. ..+.++ ++.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhc----ccchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-Cc
Confidence 54 346678999999998875 599999987532 22222222111 112222 3333445555533 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
.||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.++ |+|||++||+++ ..+.||||++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998754 899999999985 5578999999996 7
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999987
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.9e-40 Score=368.09 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=176.8
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+||+|+|+. +.+.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEE
Confidence 36999999998852 33579999999999999999999999999999999999876 358999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 974 (1425)
+.. ..+++.++||+|++.+++ .||+||+.|+. ...+.+ .+.++++..++.+ -.|+.+|..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred cccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 654 356788999999998775 69999998752 223333 2456667766643 234555543
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||++||+++ ....||+|++|++
T Consensus 152 -g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN 227 (255)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 899999999996 4578999999986
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 228 -G~iv~~G~~ 236 (255)
T d2hyda1 228 -GHIVETGTH 236 (255)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-40 Score=367.47 Aligned_cols=212 Identities=23% Similarity=0.322 Sum_probs=174.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++|+||+|.|+. .+..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC--CccEEEECCccc
Confidence 5999999998852 235699999999999999999999999999999999998763 489999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 975 (1425)
.. ..+++.++||+|++.++. .|+++|+.++. +...+.++ ++++++..++.+. .++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred chhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcCC-
Confidence 54 346678999999998764 59999998642 22333332 4455555554432 34555543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||++||+++ ..+.||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 899999999986 4578999999996
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799999987
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-38 Score=357.19 Aligned_cols=198 Identities=23% Similarity=0.342 Sum_probs=157.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.+||+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| +++||+|++.+++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-ceee
Confidence 46999999999999999999999999999999999999998 99999998 4999999877665 5999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.|+..... .+++.+.+. .+.......+.+..++.+|+.+ ..|
T Consensus 115 eni~~~~~~~~--~~~~~~~~~--------------------------------~~~~~~i~~l~~~~~~~~~~~~-~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRYKSVVKA--------------------------------CQLQQDITKFAEQDNTVLGEGG-VTL 159 (281)
T ss_dssp HHHTTTSCCCH--HHHHHHHHH--------------------------------TTCHHHHTTSTTGGGCEECTTC-TTS
T ss_pred ccccccccccc--hHHHHHHHH--------------------------------HHhHHHHHhchhhhhhhhhhhc-cCC
Confidence 99998642210 001100000 0111223456777788888654 469
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 373 (1425)
||||||||+|||||+.+|+||+|||||+|||+.+..++++.+.... ..++|+|+ ++|+. +..+.||+|++|++|+|+
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRIL-VTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEE-ECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEEE-EechH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999987643321 22455554 66766 456889999999999999
Q ss_pred EecChhHHHH
Q 047682 374 FQGPREHVLE 383 (1425)
Q Consensus 374 ~~G~~~~~~~ 383 (1425)
++|++++++.
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999974
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-37 Score=341.91 Aligned_cols=194 Identities=23% Similarity=0.353 Sum_probs=167.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCCCCCCCCHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
.|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|.+.... ..++..+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 6999999999999999999999999999999999653 369999999876432 3344679999998777778999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1003 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~-------~p~illLD 1003 (1425)
+++.+... . +.+.+.++++++.+++.+..+..+ ..||||||||++||++|++ +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc----h----hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 99876532 1 123456789999999998877763 5799999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|++ |++++.|++.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~ 217 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 217 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999989999999999997 68999999999996 7899999863
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-36 Score=334.52 Aligned_cols=198 Identities=24% Similarity=0.349 Sum_probs=168.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc---ceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 211 (1425)
.+|+||||+|++||+++|+||||||||||+++|+|+. |+ +|+|.++|+++.....+ ...+|++|+.......|
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 3699999999999999999999999999999999975 45 89999999988665443 45899999877777789
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
+.+++.++..-+ .....++++++.++|++..+..++
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcChh-----
Confidence 999998753210 112345678889999887776554
Q ss_pred cCChhhhhhHHHHHHHhc-------CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 292 GISGGQRKRVTTGEMLVG-------PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~-------~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.++++++ . +++|+.++|+.+++.++||||
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHCCEE
Confidence 599999999999999996 6799999999999999999999999999965 3 455666789999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|+++++|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999999884
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-36 Score=343.31 Aligned_cols=187 Identities=20% Similarity=0.360 Sum_probs=151.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
+++|+|||++|++||++||+||||||||||+++|+|...+ .+|.|.++|. ++|++|++.+++. ||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCSE-EHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC--CCcEEEECCE----------EEEEeccccccCc-eeec
Confidence 4799999999999999999999999999999999998763 4899999883 7999999988775 9999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------CCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELV-------ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-------~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDE 1004 (1425)
|+.|+. ..+... .+++++.. .+.+..++.++.. ...|||||||||+|||||+++|+||+|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred cccccc------cccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 997653 222222 23333333 3334445555543 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
|||+||+.+...+++.+.+....|+|+|+++|+++ ..+.||||++|++ |+++++|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHH
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999998764444446899999999974 5688999999996 6899999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1e-35 Score=320.22 Aligned_cols=196 Identities=20% Similarity=0.285 Sum_probs=160.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ +++|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEeh
Confidence 478899998763 359999999999999999999999999999999999776 3589999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.+ .+..++|++|+..+...+|++|++.+.+.++.. ..+.+ .+.+.++.+++.+..+. +..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~------~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKN----EIMDALESVEVLDLKKK------LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHH----HHHHHHHHTTCCCTTSB------GGGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCHH----HHHHHHHHcCCcccccc------cCcCCCcHHH
Confidence 53 456789999999999999999999988776533 23332 25677888887665432 3479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
|++||++|+.+|++++|||||+|||+.++..+++.|+++.+++.++|+++|+. .++||.+.+|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999999999999876544444444431 246999988865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.4e-35 Score=313.50 Aligned_cols=183 Identities=19% Similarity=0.275 Sum_probs=151.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+||+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+. +..++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHHH
Confidence 5999999999999999999999999999999999999998 99999999988653 567999999999899999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
++.+.+...+... + +..+...++.+++.+. +..+ ..||
T Consensus 90 ~l~~~~~~~~~~~---------------------~---------------~~~~~~~l~~~~~~~~-~~~~-----~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKV---------------------N---------------KNEIMDALESVEVLDL-KKKL-----GELS 127 (200)
T ss_dssp HHHHHHHHTTCCC---------------------C---------------HHHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCCcc---------------------C---------------HHHHHHHHHHcCCccc-cccc-----CcCC
Confidence 9998766543211 0 1123345666776543 2333 4599
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+. ++++|++.||+. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999998765 456666555543 57999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.35 E-value=2.5e-14 Score=149.73 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=61.0
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.+|+|+++|.++++++..+|+++++|||... ......+.+.+.++.+..+.+ ++.++|. .+...++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~-il~~~h~-~~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVN-VVATIPI-RDVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSE-EEEECCS-SCCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCE-EEEEEcc-HHHHHhhceEEEEeCCE
Confidence 3899999999999999999999999998433 334456667777765543444 4444444 35678899999999999
Q ss_pred EEEec
Q 047682 372 IVFQG 376 (1425)
Q Consensus 372 iv~~G 376 (1425)
++.-+
T Consensus 157 i~~v~ 161 (178)
T d1ye8a1 157 LIELT 161 (178)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 98654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.26 E-value=4.2e-13 Score=140.17 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=94.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVD 946 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~ 946 (1425)
.++|+||||||||||+++|+|.... ..|.+.+.+.+..... +..++..+...........+ .........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETK--KRTGFRIITTEGKKKIFSSK------FFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEEEEET------TCCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHH--HhhhhhhhhhhHHHHHHhhh------hhhhhhhhh
Confidence 4899999999999999999996543 3677777765432211 11122111100000000000 000000000
Q ss_pred HHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 047682 947 SETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026 (1425)
Q Consensus 947 ~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1026 (1425)
. .+. + .....+|+|+++|.++++++..+|++|++|||+...+ ......+.+.++.+
T Consensus 72 ~-------------~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 S-------------YGV----N-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp T-------------EEE----C-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred h-------------hhc----C-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhc
Confidence 0 000 0 0012479999999999999999999999999854433 34455556666544
Q ss_pred -CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1027 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1027 -~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
.+.|+|+++|+.+ ....+|++..+.+ |+++.-++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~~-~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLPG-AVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCTT-CEEEECCTT
T ss_pred cCCCEEEEEEccHH--HHHhhceEEEEeC-CEEEEECCc
Confidence 4899999999975 4567888888875 677666554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=6.7e-09 Score=122.98 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=58.6
Q ss_pred cccCChhhhhhHHHHHHH----hcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 290 LRGISGGQRKRVTTGEML----VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al----~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
...+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. ..+-+|+++ |.|++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iT-H~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVIS-LKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEEC-SCHHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEe-CCHHHHHhcccEE
Confidence 356899999998887433 467889999999999999999999999988642 344445444 4457999999987
Q ss_pred EE
Q 047682 366 LI 367 (1425)
Q Consensus 366 lL 367 (1425)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=7.1e-08 Score=108.95 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCcCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE
Q 047682 976 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L----~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~ 1051 (1425)
...+|+|||+.+.++..+ ..+|+++++|||-++|++.....+.+.|++.++ +.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 457999999998887664 346789999999999999999999999998864 678999999985 6788999865
Q ss_pred E
Q 047682 1052 M 1052 (1425)
Q Consensus 1052 l 1052 (1425)
+
T Consensus 294 v 294 (308)
T d1e69a_ 294 V 294 (308)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=7.5e-08 Score=108.74 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred cccCChhhhhhHHHHHH----HhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 290 LRGISGGQRKRVTTGEM----LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~a----l~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
...+|+|||+...++.. ...+++++++|||-++||+.....+.+.|++.++ ++-++ ++.|++++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Qvi-itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFI-VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEE-EECCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEE-EEECCHHHHHhcccEE
Confidence 45699999999877654 3457789999999999999999999999998753 33344 3456678999999986
Q ss_pred E--EcCC
Q 047682 366 L--ISEG 370 (1425)
Q Consensus 366 l--L~~G 370 (1425)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=1.7e-07 Score=110.63 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=63.3
Q ss_pred CcCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 047682 977 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L----~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l 1052 (1425)
..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+| .+.+.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 45899999998887554 456789999999999999999999999998865566799999998 578999997755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.43 E-value=0.00027 Score=74.75 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=33.1
Q ss_pred HhcCCcEeEEecCCCCCChHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhh
Q 047682 307 LVGPALALFMDEISTGLDSSTTFQIVTSL-RQIIHILNGTAVISLLQPAPETYDL 360 (1425)
Q Consensus 307 l~~~p~illLDEptsgLD~~t~~~i~~~L-~~~~~~~~~t~ii~~~q~~~~~~~~ 360 (1425)
.+.+..++++||+.+|=|+.....+...+ +.+.+ .+..++++. |+. ++.++
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tT-H~~-eL~~l 162 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFAT-HYF-ELTAL 162 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEC-CCH-HHHTC
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEee-ech-hhhhh
Confidence 34566899999999999998877666544 44443 456665544 433 44443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.41 E-value=0.0005 Score=72.61 Aligned_cols=59 Identities=8% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCccHHHHHh
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEA 1045 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~~~~~ 1045 (1425)
+|+.-....+.+.+++++||+.+|=|+.....+.. +++.+.+.+.+++++||.. ++.++
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 33333333445668999999999999977665554 4566777789999999986 45443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00041 Score=73.91 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=31.1
Q ss_pred hcCCcEeEEecCCCCCChHHHHHHHHH-HHHHHHhcCCEEEEEEecC
Q 047682 308 VGPALALFMDEISTGLDSSTTFQIVTS-LRQIIHILNGTAVISLLQP 353 (1425)
Q Consensus 308 ~~~p~illLDEptsgLD~~t~~~i~~~-L~~~~~~~~~t~ii~~~q~ 353 (1425)
..+..++++||+.+|=|+.....+... ++.+....+..+++ .||.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~-tTH~ 163 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF-ATHY 163 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE-ECSC
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEE-ecch
Confidence 445579999999999999999888655 55665433334444 4444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00057 Score=72.74 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=36.4
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhC-CCEEEEEecCcc
Q 047682 993 LVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPS 1039 (1425)
Q Consensus 993 L~~~p~illLDEPTsgLD~~~~~~i~~-~l~~~~~~-g~tvi~~~H~~~ 1039 (1425)
-+.+.+++++||+.+|=|+.....+.. .++.+... +..+++|||...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 345567999999999999988877655 46667654 568999999764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.88 E-value=0.0023 Score=69.73 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=26.4
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
|+++.+=++||+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444434478999999999999999999877763
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.79 E-value=0.0037 Score=67.98 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=28.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
-|+++.+-+.||+++.|.|+||+|||||+.-|+-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 45555455899999999999999999998888743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.54 E-value=0.0045 Score=65.69 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=38.8
Q ss_pred cCCcEeEEecCCCCC---ChHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hhhHHhhcCeEEEEc
Q 047682 309 GPALALFMDEISTGL---DSSTTFQIVTSLRQIIHILNGTAVISLLQP---------APETYDLFDDIILIS 368 (1425)
Q Consensus 309 ~~p~illLDEptsgL---D~~t~~~i~~~L~~~~~~~~~t~ii~~~q~---------~~~~~~~~D~vilL~ 368 (1425)
.+|++++.|-.+.-+ +.......+..|.++++..+.+++++.+.+ ...+...+|-|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 478899988765443 555555566666677776666666654432 233556899998885
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.00064 Score=71.33 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEE
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVT 182 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 182 (1425)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 47789999999999999999999976543 56664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.28 E-value=0.00097 Score=67.00 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.00097 Score=66.57 Aligned_cols=25 Identities=36% Similarity=0.305 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999977653
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.027 Score=60.64 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=31.8
Q ss_pred HhcCCcEeEEecCCCC-----CChHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 047682 307 LVGPALALFMDEISTG-----LDSSTTFQIVTSLRQIIHILNGTAVISLLQPA 354 (1425)
Q Consensus 307 l~~~p~illLDEptsg-----LD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~ 354 (1425)
-..+++++++|--++- -|.....++++.|+.++...+.++++ +||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~-v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceeh-hhhcc
Confidence 3568999999966432 24555677888888888876655554 56654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.05 E-value=0.0011 Score=67.64 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
|+++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.00017 Score=74.57 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=28.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 56677777776 99999999999999999997544
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.93 E-value=0.054 Score=56.24 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=26.3
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 047682 136 ILKDV-NGIVKPSRLTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 136 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~ 168 (1425)
-|+++ ++-+++|+++.|.|+||+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34443 4569999999999999999999976443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.90 E-value=0.0007 Score=71.20 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEE
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVT 182 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 182 (1425)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 46788999999999999999999986543 56665
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0019 Score=64.45 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.+.++.|+|||||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999998763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.82 E-value=0.0018 Score=67.79 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+|..++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 58899999999999999999999853
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.76 E-value=0.0021 Score=64.47 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999997764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.73 E-value=0.0014 Score=65.53 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
++++|+|++|||||||++.|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999888764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.69 E-value=0.0019 Score=65.76 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998643
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.00078 Score=68.06 Aligned_cols=27 Identities=44% Similarity=0.650 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 357899999999999999999988654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.00024 Score=73.30 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=26.8
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45667777776 99999999999999999996
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.002 Score=64.11 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
+++|+|++|||||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.56 E-value=0.0026 Score=64.10 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.++|.||+|||||||.+.|+-.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.54 E-value=0.0031 Score=61.67 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
+++.|.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999988643
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.039 Score=59.22 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=33.1
Q ss_pred HhhCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Q 047682 993 LVANPSIIFMDEPTS-----GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1037 (1425)
Q Consensus 993 L~~~p~illLDEPTs-----gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~ 1037 (1425)
-..+|+++++|--++ --|......+++.|+.+++. |+|||++.|.
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 357899999995542 12566667788888887754 8999999884
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.44 E-value=0.0033 Score=62.83 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++|-.++|.|||||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566789999999999999999997763
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.42 E-value=0.0028 Score=63.02 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.40 E-value=0.003 Score=63.14 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.20 E-value=0.0089 Score=63.78 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
-+.|.||+|+|||++.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4789999999999999999964
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.18 E-value=0.0037 Score=62.37 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999875
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0045 Score=64.27 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.14 E-value=0.0041 Score=61.85 Aligned_cols=22 Identities=55% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998665
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.13 E-value=0.11 Score=53.82 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=38.0
Q ss_pred hCCcEEEEeCCCCCC----C-HHHHHHHHHHHHHHHhCCCEEEEEecCccH--------HHHHhcCEEEEEe
Q 047682 995 ANPSIIFMDEPTSGL----D-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI--------DIFEAFDELFLMK 1053 (1425)
Q Consensus 995 ~~p~illLDEPTsgL----D-~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~--------~~~~~fD~v~~l~ 1053 (1425)
.+|+++++|--+.-. + ......+.+.++...+.++|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999766532 2 233334444455555669999999996531 2334678888775
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.09 E-value=0.0043 Score=63.57 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999963
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.004 Score=61.98 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.98 E-value=0.0021 Score=67.49 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+|..++++|+||+|||||+|.|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred ccceEEEECCCCccHHHHHHhhccH
Confidence 4788999999999999999999985
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.023 Score=60.72 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
..-+.+.||+|+|||++.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 344779999999999999999963
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0061 Score=62.89 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
|-+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999999999998887654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.87 E-value=0.014 Score=62.19 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+.||+|+|||+|.++|++.
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 689999999999999999964
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.84 E-value=0.0051 Score=61.46 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|.++.|+|++||||||+-+.|+-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999999864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0053 Score=63.67 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.|.++.|+||||+|||||.+.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999998753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.79 E-value=0.0064 Score=61.15 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999877643
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.77 E-value=0.0066 Score=61.89 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|-.+.|+|||||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999554
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.67 E-value=0.0056 Score=62.67 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|++|||||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999854
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.67 E-value=0.072 Score=55.83 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=38.9
Q ss_pred hCCcEEEEeCCCC---CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCc---------cHHHHHhcCEEEEEe
Q 047682 995 ANPSIIFMDEPTS---GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELFLMK 1053 (1425)
Q Consensus 995 ~~p~illLDEPTs---gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~---------~~~~~~~fD~v~~l~ 1053 (1425)
.+|++++.|--+. +.+.......+..+.+++ +.+.|++++.|.. +..+...+|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4689999886544 445655555555555554 4589999988842 112445689998886
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.0069 Score=59.35 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999997763
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.64 E-value=0.0069 Score=64.04 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++|+||+|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998544
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.64 E-value=0.0074 Score=61.67 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.61 E-value=0.0075 Score=64.86 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 185 (1425)
..++|.||||||||||.++|++.+.. +-+.+|+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc-----ceEEEec
Confidence 45889999999999999999998753 3345555
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.005 Score=62.67 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999987654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.60 E-value=0.0053 Score=62.90 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.58 E-value=0.0062 Score=60.60 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++|+|++|||||||++.|..+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.57 E-value=0.0068 Score=60.38 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
++|-.++|+||+||||||+.+.|+-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 367789999999999999999998643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.50 E-value=0.0072 Score=60.98 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999963
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.0086 Score=59.78 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.42 E-value=0.0057 Score=61.98 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0093 Score=61.03 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++.|+|||||||||+.+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.34 E-value=0.0066 Score=60.92 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
..++|.||+|||||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.32 E-value=0.0082 Score=58.44 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhhHHhhhcC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g 887 (1425)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.23 E-value=0.0094 Score=59.99 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.011 Score=58.01 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
=.++|+|++|+|||||++.|+|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.16 E-value=0.0099 Score=60.36 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.011 Score=59.43 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
+-+++.++|+|||||||+.+.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.0098 Score=61.22 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.011 Score=60.25 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.10 E-value=0.0074 Score=61.13 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.04 E-value=0.0085 Score=66.54 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=27.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
++.|.-++|.||.||||||||++|++.+++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 4556678999999999999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.00 E-value=0.012 Score=59.55 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||+++|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.99 E-value=0.01 Score=60.32 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|||||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998665
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.94 E-value=0.012 Score=58.31 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999876
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.93 E-value=0.012 Score=59.87 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.91 E-value=0.036 Score=59.54 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+..-+.|.||+|+|||+|.+++++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34447799999999999999999753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.89 E-value=0.01 Score=59.85 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.014 Score=58.43 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999986
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.84 E-value=0.013 Score=59.08 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.84 E-value=0.014 Score=58.60 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999873
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.82 E-value=0.012 Score=57.48 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|||||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.78 E-value=0.0098 Score=59.92 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+||+|++|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.012 Score=57.71 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
|=.++|+|++|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999853
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.75 E-value=0.012 Score=58.12 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999643
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.015 Score=58.78 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.+.|+||+|||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999999986543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.74 E-value=0.012 Score=58.33 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
..++.|.|++||||||+-+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4588999999999999999999754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.013 Score=57.21 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999999999864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.66 E-value=0.011 Score=59.22 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|||||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.011 Score=58.96 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.61 E-value=0.012 Score=59.83 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
++||-|++|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.61 E-value=0.013 Score=58.35 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.57 E-value=0.012 Score=58.24 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||+||||||+.+.|+-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999854
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.016 Score=60.92 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999999877643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.016 Score=59.17 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.|+||||||||||++.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.47 E-value=0.016 Score=57.78 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|++||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999765
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.016 Score=58.07 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|.+|+|||||+|.|+|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.42 E-value=0.016 Score=58.98 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.39 E-value=0.017 Score=58.21 Aligned_cols=22 Identities=59% Similarity=0.878 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998665
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.36 E-value=0.018 Score=59.19 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++++|.||||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999997653
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.36 E-value=0.016 Score=56.99 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.35 E-value=0.017 Score=58.04 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.33 E-value=0.017 Score=58.13 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.33 E-value=0.012 Score=61.95 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.014 Score=59.31 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.31 E-value=0.014 Score=58.36 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999884
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.31 E-value=0.018 Score=57.18 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.|+|++||||||+-+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999997764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.26 E-value=0.039 Score=57.79 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=26.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+-+++|+++.|.|+||+|||||..-++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3559999999999999999999988776544
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.23 E-value=0.018 Score=58.06 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|+|++.||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.22 E-value=0.012 Score=59.20 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+||+|++|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.18 E-value=0.019 Score=56.72 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998864
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.016 Score=58.16 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999854
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.13 E-value=0.019 Score=57.67 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.12 E-value=0.018 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
=.+||+|.+|+|||||++.|+|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.017 Score=58.16 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhhHHhhhcCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
..+.|+||||+|||||++-|..+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998853
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.012 Score=59.20 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.97 E-value=0.019 Score=57.50 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhhHHhhhcCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999853
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.011 Score=59.83 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.|-++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.95 E-value=0.023 Score=57.13 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677889999999999999998874
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.92 E-value=0.026 Score=59.60 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=23.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~ 168 (1425)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 459999999999999999999977554
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.82 E-value=0.016 Score=59.45 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.023 Score=58.28 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
|=+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999877764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.018 Score=56.07 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+.|+||+||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998643
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.82 E-value=0.017 Score=56.33 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.024 Score=58.75 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.79 E-value=0.022 Score=58.65 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-++|+|++|||||||++.|.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.67 E-value=0.02 Score=58.40 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.|+||||||||||.+.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.67 E-value=0.018 Score=56.05 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.56 E-value=0.055 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999984
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.027 Score=58.23 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999987654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.53 E-value=0.025 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|.+|||||||++.|.|.-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999853
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.52 E-value=0.025 Score=60.62 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.45 E-value=0.028 Score=58.35 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|-|||||||||+-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998764
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.45 E-value=0.024 Score=57.58 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhhHHhhhcC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
..++.|+||+||||||+-+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.02 Score=63.41 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999986553
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.33 E-value=0.0095 Score=58.55 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|+|++|+|||||++.|+|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.18 E-value=0.028 Score=56.94 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
++|-.+.|+||+||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677889999999999999999994
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.026 Score=58.30 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
++||-|++||||||+-+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.12 E-value=0.028 Score=61.95 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.-++++||||+|||.|.|+|+..+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 34557899999999999999998764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.10 E-value=0.023 Score=55.64 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.01 E-value=0.027 Score=55.63 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhhHHhhhcCCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+.|+|++||||||+-+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998643
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.99 E-value=0.032 Score=58.68 Aligned_cols=24 Identities=50% Similarity=0.746 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
+++.||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 689999999999999999988754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.037 Score=58.39 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
+-+++|+++.|.||||||||||..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999887764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.032 Score=58.75 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.79 E-value=0.037 Score=58.60 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
..+|.||||+||||+.++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.73 E-value=0.036 Score=57.97 Aligned_cols=22 Identities=59% Similarity=0.821 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.|.||||+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999865
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.71 E-value=1.8 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.69 E-value=0.037 Score=58.77 Aligned_cols=25 Identities=44% Similarity=0.589 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.-++|.||||||||+|.++|+....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 4578999999999999999998653
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.65 E-value=0.033 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
-.++.|+||+||||||+-+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.61 E-value=0.031 Score=59.77 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999963
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.58 E-value=0.042 Score=58.65 Aligned_cols=28 Identities=43% Similarity=0.692 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++..-+++.||||||||+|.++|+..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3445678999999999999999998764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.045 Score=59.83 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 209 (1425)
+++|-|++||||||+.+.|...+... . ....+..+++++.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---~--------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---P--------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---T--------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh---c--------------CCCceEEEeeeeeECCc
Confidence 78999999999999999998776421 0 01357888888887764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.41 E-value=0.033 Score=55.96 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+||+|+..||||||+|.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999974
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.40 E-value=0.04 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999998863
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.33 E-value=0.05 Score=56.12 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=29.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 188 (1425)
+.|.++-+.|.||||||||.+.|.-.+.... ..-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHH
Confidence 4677899999999999999999986552110 012456676543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.33 E-value=0.04 Score=54.25 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988664
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.26 E-value=0.014 Score=57.38 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|.+|+|||||+|.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.22 E-value=0.031 Score=56.60 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.19 E-value=0.034 Score=59.71 Aligned_cols=29 Identities=41% Similarity=0.673 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++..-++|.||||+|||+|.++|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 33455588999999999999999999874
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.16 E-value=0.031 Score=56.90 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+.++.|+||+||||||+-+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.12 E-value=0.044 Score=57.32 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3899999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.07 E-value=0.039 Score=58.60 Aligned_cols=23 Identities=52% Similarity=0.820 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++.||||+|||+|.++|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 68999999999999999998753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.01 E-value=0.043 Score=54.54 Aligned_cols=22 Identities=55% Similarity=0.638 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++++|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999765
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.00 E-value=0.04 Score=54.76 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.|+|++||||||+-+.|+-+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999854
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.97 E-value=0.048 Score=55.17 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047682 149 LTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~ 168 (1425)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999986
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.97 E-value=0.053 Score=55.73 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+.+++++||+|+||||.+-=|+-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999887876653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.93 E-value=0.056 Score=59.62 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.051 Score=56.08 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.|.+++|-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987664
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.87 E-value=0.044 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.80 E-value=0.045 Score=55.47 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
++.|+||+||||||.-+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999985
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.73 E-value=0.045 Score=54.28 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
-.++|+|.+|||||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.72 E-value=0.044 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhhHHhhhcCCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.71 E-value=0.045 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.68 E-value=0.052 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++.++|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45688999999999999999887654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.65 E-value=0.049 Score=55.28 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987663
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.62 E-value=0.051 Score=53.77 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.61 E-value=0.051 Score=61.96 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.53 E-value=0.053 Score=53.82 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=90.43 E-value=0.039 Score=60.96 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.2
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 890 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~ 890 (1425)
...++.|.-+.|.|+.||||||||++|.+..+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 33456677799999999999999999998543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.43 E-value=0.05 Score=55.60 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhhHHhhhcC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+++++|.+|||||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.35 E-value=0.041 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.32 E-value=0.056 Score=53.11 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 047682 150 TLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G 169 (1425)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997774
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.22 E-value=0.13 Score=51.04 Aligned_cols=34 Identities=29% Similarity=0.188 Sum_probs=27.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++.....+ .|.=++|.||||+|||||...|.-+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 455555555 8899999999999999999888653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.19 E-value=0.051 Score=58.04 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
-++|.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999999764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.14 E-value=0.056 Score=54.19 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999954
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.059 Score=53.62 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987664
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.13 E-value=0.25 Score=52.60 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+=++.|.++-|-||+|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 5689999999999999999999877765
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.067 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.057 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|+|++|+|||||++.+.+..
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.04 E-value=0.068 Score=56.68 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 346889999999999999999988754
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.051 Score=60.06 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
..-++||.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.96 E-value=0.051 Score=57.92 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKT 890 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~ 890 (1425)
...+.|.||+|||||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34588999999999999999998543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.052 Score=56.84 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.+++|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999998875
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.96 E-value=0.074 Score=61.25 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQH 203 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~ 203 (1425)
=++++||+|||||-|.+.||+.+.-- -+..++...+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP-----Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP-----FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC-----EEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC-----EEEeecceee------ecceeecc
Confidence 47899999999999999999987532 3555554443 48999885
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.95 E-value=0.064 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+.|-++-+.|.|||||||+-+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3788999999999999999999974
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.90 E-value=0.066 Score=55.88 Aligned_cols=22 Identities=50% Similarity=0.902 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
..+-||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999865
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.89 E-value=0.068 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998644
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.86 E-value=0.059 Score=55.71 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++|.||+||||||+-+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999964
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.84 E-value=0.058 Score=54.49 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhc
Q 047682 867 LTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~ 886 (1425)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999996
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.84 E-value=0.069 Score=55.72 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=24.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
|=+++|+++.|.||+|+|||||..-++
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999987665
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.075 Score=53.34 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.64 E-value=0.085 Score=53.55 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++|+|...+|||||+++|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 69999999999999999998653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.59 E-value=0.07 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.55 E-value=0.095 Score=51.11 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+||.+++|-|+=|||||||.|.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 35899999999999999999999987653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.53 E-value=0.063 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||+||||||.-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.52 E-value=0.094 Score=53.80 Aligned_cols=26 Identities=38% Similarity=0.339 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
..+++++||+|+||||.+--|+-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999888887653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.52 E-value=0.069 Score=52.95 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++++|++|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.091 Score=56.07 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+-+++|++|.|.||||||||||+-.++-..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 679999999999999999999987777654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.47 E-value=0.058 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.43 E-value=0.073 Score=54.62 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999776764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.28 E-value=0.086 Score=52.02 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.087 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.19 E-value=0.15 Score=50.61 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.|+. |...-.|.=+++.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3453 344557889999999999999999887754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.13 E-value=0.074 Score=52.28 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.12 E-value=0.046 Score=60.75 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
-++|.||||+|||||++.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4689999999999999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.06 E-value=0.064 Score=61.13 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.082 Score=51.99 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|.+|+|||||++.+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999987653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=0.077 Score=52.48 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999987653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.02 E-value=0.085 Score=55.42 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.6
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhh
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVL 885 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l 885 (1425)
|=+++|+++.|.||+|+|||||.--+
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHH
Confidence 34889999999999999999996544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.097 Score=51.60 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++|+|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 68999999999999999988643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.99 E-value=0.077 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999853
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.99 E-value=0.085 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
..+-||+|+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 57899999999999999987653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.077 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.078 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.87 E-value=0.16 Score=50.70 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 889999999999999999864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.85 E-value=0.068 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++++|++|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999998875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.84 E-value=0.075 Score=58.55 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
..-.+||.||+|||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.78 E-value=0.08 Score=54.54 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.|-+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999998763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.78 E-value=0.062 Score=57.84 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.5
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998865
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.78 E-value=0.14 Score=55.60 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|.|.||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.75 E-value=0.087 Score=52.74 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.60 E-value=0.084 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||+||||||+-+.|+-+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999964
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.57 E-value=0.1 Score=53.51 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047682 149 LTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~ 168 (1425)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999985
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=0.094 Score=54.40 Aligned_cols=22 Identities=45% Similarity=0.869 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+.+.||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999765
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.51 E-value=0.087 Score=52.67 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.|+||.||||||+.+.|+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999854
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.49 E-value=0.093 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.47 E-value=0.067 Score=53.51 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999988654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.45 E-value=0.074 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999998763
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.41 E-value=0.12 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+++++||+|+||||.+-=|+-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999987777654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.13 Score=50.93 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.095 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.34 E-value=0.072 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.093 Score=51.36 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.1 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
++.+++|-|+-||||||+++.|+...
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999754
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.18 E-value=0.072 Score=56.85 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++.|.||||+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.12 E-value=0.093 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+++|.||+||||||+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.09 E-value=0.11 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=17.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
-.+++++||+|+||||.+-=|+-.+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999888886553
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.05 E-value=0.1 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988743
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.00 E-value=0.11 Score=54.07 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=24.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
+-+++|+++.|.|++|+|||||..-++
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999999976665
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.99 E-value=0.19 Score=49.61 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=27.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.|+. ++..-.|.=++|.|+||+|||||...|.-+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4555 455668899999999999999998777654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.91 E-value=0.1 Score=51.15 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997774
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=0.099 Score=51.76 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987643
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.81 E-value=0.093 Score=52.39 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++++|++|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.79 E-value=0.082 Score=52.36 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5699999999999999997654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.14 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+++++||+|+||||.+-=|+-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999888886654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.72 E-value=0.086 Score=54.98 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999873
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.72 E-value=0.1 Score=52.82 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.70 E-value=0.13 Score=52.92 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.|.++++=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5889999999999999999999987754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.089 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++++|++|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.64 E-value=0.1 Score=54.97 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047682 150 TLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.63 E-value=0.081 Score=52.47 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=8.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.13 Score=52.75 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047682 149 LTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~ 168 (1425)
+++|.|++||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.47 E-value=0.11 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.42 E-value=0.12 Score=50.76 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.37 E-value=0.1 Score=53.68 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+-.+++++||+|+||||.+-=||-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999777764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.19 E-value=0.11 Score=54.18 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.|.||+|+||||+.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.19 E-value=0.13 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++-+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.11 Score=56.74 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
++||.|++||||||+-+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 899999999999999888864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=0.12 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998853
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.08 E-value=0.12 Score=52.83 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhc
Q 047682 867 LTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~ 886 (1425)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.07 E-value=0.13 Score=52.58 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCChhhHHhhhcC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
..++.++||+|+||||.+-=|+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999887875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.12 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999988764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.098 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999865
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.90 E-value=0.12 Score=50.73 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.13 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.85 E-value=0.14 Score=49.77 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+||.+++|-|+=|||||||.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHh
Confidence 46999999999999999999999984
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.85 E-value=0.4 Score=47.48 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=26.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++.....+ .|.=+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 345444444 7889999999999999998777654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=86.82 E-value=0.13 Score=58.50 Aligned_cols=29 Identities=38% Similarity=0.608 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.++-+++|.||.||||||+|.++...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 45668999999999999999999987653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.82 E-value=0.15 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.75 E-value=0.13 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.72 E-value=0.088 Score=56.64 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|-|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 789999999999999999987654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.69 E-value=0.11 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478999999999999998775
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.096 Score=51.78 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.66 E-value=0.13 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHhhhcCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999743
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.57 E-value=0.14 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999977654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=0.12 Score=52.97 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhhHHhhhcC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+++++||+|+||||.+-=||-
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999877774
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.51 E-value=0.14 Score=52.67 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=16.1
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
.-.+++++||+|+||||.+-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999777774
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.51 E-value=0.13 Score=54.54 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568999999999999999988753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.48 E-value=0.14 Score=53.55 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.9
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
+=+++|+++.|.|++|+|||||.--++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999999976665
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=0.13 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.|.+++|-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999853
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=0.13 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++++|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=0.15 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.33 E-value=0.15 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 047682 150 TLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G 169 (1425)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.31 E-value=0.14 Score=56.09 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
+||+|.|-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.30 E-value=0.17 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++|-|++|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876544
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.28 E-value=0.12 Score=51.74 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.25 E-value=0.13 Score=50.64 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.06 E-value=0.12 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998763
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.12 Score=51.11 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.16 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998854
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.95 E-value=0.16 Score=52.05 Aligned_cols=21 Identities=38% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++++|+.+||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999643
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.93 E-value=0.14 Score=57.26 Aligned_cols=28 Identities=43% Similarity=0.415 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677899999999999999999999874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.89 E-value=0.14 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.++|++|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.27 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChhhHHhhhcC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g 887 (1425)
=.++++|.+|+|||||++.+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999997765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.16 Score=50.21 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+.++|.+|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.86 E-value=0.13 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhhHHhhhcCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.-+.++||+|+|||+|.++||..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 45568999999999999999974
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.81 E-value=0.13 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.79 E-value=0.14 Score=53.44 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999864
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.77 E-value=0.23 Score=53.32 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|-|-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999975
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.75 E-value=0.16 Score=49.87 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047682 149 LTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G 169 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.71 E-value=0.16 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=0.14 Score=50.92 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998876
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.49 E-value=0.13 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=9.1
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998876
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.43 E-value=0.18 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++++|.+|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3678999999999999987763
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.42 E-value=0.18 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999987765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.36 E-value=0.13 Score=50.19 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=0.17 Score=51.81 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.06 E-value=0.18 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.03 E-value=0.17 Score=52.05 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+|.+++|=|+-||||||+.+.|+-+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999999998643
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.79 E-value=0.21 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|.-+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.73 E-value=0.21 Score=54.48 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=23.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
...+.| ..++.||||+|||.|.++|++.+
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 56678999999999999999985
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=0.32 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++++|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977664
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.63 E-value=0.17 Score=52.53 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.|.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999964
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=84.53 E-value=0.14 Score=53.39 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+.||+|+||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999974
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.50 E-value=0.18 Score=50.91 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhhHHhhhcC
Q 047682 868 TALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g 887 (1425)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999998775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.19 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=0.25 Score=54.07 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
|....+++||+|+|||.|.+.|+-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 444678999999999999999997653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.23 E-value=0.17 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.13 E-value=0.22 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987754
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.09 E-value=0.22 Score=53.40 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999865
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.06 E-value=0.2 Score=49.38 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhhHHhhhcC
Q 047682 868 TALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g 887 (1425)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=84.03 E-value=0.21 Score=56.58 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=37.7
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 989 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 989 ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..+|=.+|+|+++.|.. |..++...+ +.+.+|..|+.|.|-.+ .....+|+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhh
Confidence 445667899999999997 666666544 45668999999999865 33444443
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.95 E-value=0.34 Score=47.91 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=22.9
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
-.-.|.=+.|+|+||+|||||.-.|..+
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3446888999999999999998777654
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.89 E-value=0.23 Score=53.15 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.73 E-value=0.23 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047682 150 TLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999887653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.71 E-value=4.6 Score=42.47 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
...+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988853
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.54 E-value=0.22 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.52 E-value=0.21 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.49 E-value=0.19 Score=49.34 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999997765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.32 E-value=0.27 Score=49.35 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047682 149 LTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~ 168 (1425)
.++|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999983
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.29 E-value=0.25 Score=52.57 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
+-++.|+++.+.||+|||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 46889999999999999999997666543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.24 E-value=0.33 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHH---hcCCCC
Q 047682 148 RLTLLLGPPASGKTTLLLAL---AGKLDP 173 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L---~G~~~~ 173 (1425)
+-++|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 35799999999999999998 565554
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.08 E-value=0.22 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
.|-.|+..+|.|++|+|||||+..|+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 467899999999999999999999985
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.03 E-value=0.25 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.02 E-value=0.26 Score=52.81 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-|-.|+..+|+|++|+|||||+..|+...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999998643
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.01 E-value=0.23 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|++|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999887654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.96 E-value=0.24 Score=51.30 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.91 E-value=0.24 Score=50.23 Aligned_cols=22 Identities=55% Similarity=0.847 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++|-|.-||||||+++.|..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.89 E-value=0.25 Score=48.37 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998886
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.85 E-value=0.25 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999999884
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=82.78 E-value=0.25 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.69 E-value=0.32 Score=51.78 Aligned_cols=31 Identities=39% Similarity=0.623 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+-++.|++|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 5689999999999999999999988887643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.67 E-value=0.39 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
-++|+|+..+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.56 E-value=0.27 Score=48.23 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.56 E-value=0.26 Score=52.92 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 899999999999999887753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.55 E-value=0.25 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhhHHhhhcCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
..+.|.||+|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999864
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.53 E-value=0.26 Score=49.42 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhc
Q 047682 867 LTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~ 886 (1425)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999883
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=82.50 E-value=0.25 Score=49.87 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEcCCCCChhhHHhhhcCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+||+|.-.||||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.43 E-value=0.28 Score=50.59 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cCCCCC
Q 047682 149 LTLLLGPPASGKTTLLLALA-GKLDPS 174 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~-G~~~~~ 174 (1425)
.++|+|.+|+|||||++-+. +...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 57899999999999999874 334444
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.37 E-value=0.28 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++++|.+|+|||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999866543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.30 E-value=0.22 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+.++|.+|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=81.95 E-value=0.44 Score=46.85 Aligned_cols=33 Identities=33% Similarity=0.257 Sum_probs=25.1
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++. ++-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 444 444557889999999999999998666543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.82 E-value=0.26 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998775
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.58 E-value=0.34 Score=51.46 Aligned_cols=21 Identities=52% Similarity=0.578 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 047682 148 RLTLLLGPPASGKTTLLLALA 168 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~ 168 (1425)
+-++|+|+.|||||||..+|.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCcHHHHHHHHH
Confidence 347999999999999999994
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.56 E-value=0.27 Score=50.71 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHH
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYF 1075 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf 1075 (1425)
+.+++++||.- ++...+...+...+.+.. ....+++++++.+. +..- +.++ -+++.+.|+.. .++..|.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchhh-hhhH-----HHHH-HHHhhhcccch--hhhHHHH
Confidence 35799999965 455555555555554432 24566777777653 2221 1222 34566777643 4555565
Q ss_pred hh
Q 047682 1076 EA 1077 (1425)
Q Consensus 1076 ~~ 1077 (1425)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.20 E-value=0.26 Score=53.87 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+||+|.+.+|||||+|+|+|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999983
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.11 E-value=0.32 Score=50.20 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhc
Q 047682 867 LTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~ 886 (1425)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.58 E-value=0.35 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=80.23 E-value=0.4 Score=50.83 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+=+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 5689999999999999999999766654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.19 E-value=0.31 Score=50.17 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHh
Q 047682 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFE 1076 (1425)
Q Consensus 997 p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~ 1076 (1425)
.+++++||.- .+.......+.+.|.+... ...++++++++.. +... +.++ ...+.+-|+.. .++..+..
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~-i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l~ 168 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAHK-LTPA-----LLSQ-CTRFRFQPLPQ--EAIERRIA 168 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHHH
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhccc-ceeeccccCcHHH-hHHH-----HHHH-Hhhhccccccc--cccccccc
Confidence 4699999974 6777777777777766432 3344556666542 2221 1122 33445555542 45566655
Q ss_pred h
Q 047682 1077 A 1077 (1425)
Q Consensus 1077 ~ 1077 (1425)
.
T Consensus 169 ~ 169 (227)
T d1sxjc2 169 N 169 (227)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.13 E-value=0.32 Score=50.84 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=43.3
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHH
Q 047682 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISY 1074 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~y 1074 (1425)
.+.+++++||.-. |...+...+.+.+.+.. ....+|+++++++.-.-.+-+|. ..+.+-|+.. .++.++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i~~~l~sR~-------~~i~~~~~~~--~~~~~~ 198 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQC-------LLIRCPAPSD--SEISTI 198 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTS-------EEEECCCCCH--HHHHHH
T ss_pred CCceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccchhhhhhcch-------heeeecccch--hhHHHH
Confidence 3567999999964 77777777777765432 24557889888752111122332 2355666543 456666
Q ss_pred HhhC
Q 047682 1075 FEAI 1078 (1425)
Q Consensus 1075 f~~~ 1078 (1425)
.+.+
T Consensus 199 l~~i 202 (252)
T d1sxje2 199 LSDV 202 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|