Citrus Sinensis ID: 047699

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLFRY
ccccccccccccHHHHHHccHHHHHcccccHHHHHHHcccEEEEEEEcccccEEEcccEEEEEEEEcccccEEEEEEEEccccccEEEEcccccEEEEEccEEEEEEccHHHHHHccccEEEEEEEcccccccEEEEccc
ccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHccEEEEEEEccccccEEEccccEEEEEEEEcccccEEEEEEEcccccccEEEcccccEEEEcccEEEEEcccccccccccEEEEEEEEEEcHHHHHHHHHHcc
msqngklmpnldqqSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFvvkrntqprFQFVVMNRRNTGWFVVVSISNeeynvpnrkylYANNIEARVFAMLLSSVkywpfydnqergLVQLFRY
msqngklmpnldQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVvkrntqprfqfvvmnrrnTGWFVVVSISneeynvpnRKYLYANNIEARVFAMLLSSVKYwpfydnqerglvqlfry
MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLFRY
****************KLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLF**
********************LTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLFRY
MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLFRY
********PNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLFRY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLFRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query140 2.2.26 [Sep-21-2011]
Q9SJF3 367 mRNA-decapping enzyme-lik yes no 0.764 0.291 0.757 1e-40
Q8IZD4 617 mRNA-decapping enzyme 1B yes no 0.742 0.168 0.345 4e-10
Q5R413 609 mRNA-decapping enzyme 1B yes no 0.742 0.170 0.345 4e-10
Q3SZL6 581 mRNA-decapping enzyme 1B yes no 0.442 0.106 0.419 8e-10
Q3U564 578 mRNA-decapping enzyme 1B yes no 0.742 0.179 0.318 2e-09
Q91YD3 602 mRNA-decapping enzyme 1A no no 0.742 0.172 0.309 5e-08
Q9NPI6 582 mRNA-decapping enzyme 1A no no 0.742 0.178 0.309 8e-08
Q9P805127 mRNA-decapping enzyme sub yes no 0.435 0.480 0.354 8e-05
>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2 Back     alignment and function desciption
 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 91/107 (85%)

Query: 1   MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG 60
           MSQNGK++PNLDQ ST+LL+LTVLQRIDP+IEEILITAAHVTFYEFNI+LSQWSRKDVEG
Sbjct: 1   MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYAN 107
           SLFVVKR+TQPRFQF+VMNRRNT   V   + + EY V     LY N
Sbjct: 61  SLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRN 107
May play a role in the degradation of mRNAs.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q8IZD4|DCP1B_HUMAN mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2 Back     alignment and function description
>sp|Q5R413|DCP1B_PONAB mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1 Back     alignment and function description
>sp|Q3SZL6|DCP1B_BOVIN mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1 Back     alignment and function description
>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1 Back     alignment and function description
>sp|Q91YD3|DCP1A_MOUSE mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1 Back     alignment and function description
>sp|Q9NPI6|DCP1A_HUMAN mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2 Back     alignment and function description
>sp|Q9P805|DCP1_SCHPO mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
357453179 366 mRNA-decapping enzyme-like protein [Medi 0.764 0.292 0.803 1e-41
225464884 369 PREDICTED: mRNA-decapping enzyme-like pr 0.764 0.289 0.803 1e-41
356543612 366 PREDICTED: mRNA-decapping enzyme-like pr 0.764 0.292 0.803 4e-41
358248438 368 uncharacterized protein LOC100783361 [Gl 0.764 0.290 0.803 4e-41
388506170 279 unknown [Medicago truncatula] 0.764 0.383 0.794 2e-40
217072998 261 unknown [Medicago truncatula] 0.764 0.409 0.794 3e-40
225440801 370 PREDICTED: mRNA-decapping enzyme-like pr 0.764 0.289 0.766 3e-39
255579371 366 conserved hypothetical protein [Ricinus 0.764 0.292 0.775 3e-39
297843616 368 hypothetical protein ARALYDRAFT_470898 [ 0.764 0.290 0.757 8e-39
449451165 368 PREDICTED: mRNA-decapping enzyme-like pr 0.764 0.290 0.757 9e-39
>gi|357453179|ref|XP_003596866.1| mRNA-decapping enzyme-like protein [Medicago truncatula] gi|355485914|gb|AES67117.1| mRNA-decapping enzyme-like protein [Medicago truncatula] Back     alignment and taxonomy information
 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 92/107 (85%)

Query: 1   MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG 60
           MSQNGKLMPNLDQQSTKLL+LTVLQRIDPF+EEILITAAHVTFYEFNIDLSQWSRKDVEG
Sbjct: 1   MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYAN 107
           SLFVVKRNTQPRFQF+VMNRRNT   V   + + EY +     LY N
Sbjct: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRN 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464884|ref|XP_002273425.1| PREDICTED: mRNA-decapping enzyme-like protein [Vitis vinifera] gi|296084878|emb|CBI28287.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543612|ref|XP_003540254.1| PREDICTED: mRNA-decapping enzyme-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|358248438|ref|NP_001239626.1| uncharacterized protein LOC100783361 [Glycine max] gi|255636473|gb|ACU18575.1| unknown [Glycine max] gi|255641041|gb|ACU20800.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388506170|gb|AFK41151.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072998|gb|ACJ84859.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225440801|ref|XP_002281777.1| PREDICTED: mRNA-decapping enzyme-like protein [Vitis vinifera] gi|297740156|emb|CBI30338.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255579371|ref|XP_002530530.1| conserved hypothetical protein [Ricinus communis] gi|223529934|gb|EEF31862.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297843616|ref|XP_002889689.1| hypothetical protein ARALYDRAFT_470898 [Arabidopsis lyrata subsp. lyrata] gi|297335531|gb|EFH65948.1| hypothetical protein ARALYDRAFT_470898 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449451165|ref|XP_004143332.1| PREDICTED: mRNA-decapping enzyme-like protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
TAIR|locus:2201821 367 DCP1 "decapping 1" [Arabidopsi 0.764 0.291 0.757 3.4e-38
FB|FBgn0034921 372 Dcp1 "Decapping protein 1" [Dr 0.778 0.293 0.322 6.5e-12
UNIPROTKB|E2R259 612 DCP1B "Uncharacterized protein 0.742 0.169 0.345 1.5e-09
UNIPROTKB|Q8IZD4 617 DCP1B "mRNA-decapping enzyme 1 0.742 0.168 0.345 1.5e-09
UNIPROTKB|Q3SZL6 581 DCP1B "mRNA-decapping enzyme 1 0.742 0.179 0.336 6e-09
UNIPROTKB|I3LE95 560 DCP1B "Uncharacterized protein 0.742 0.185 0.336 7.3e-09
UNIPROTKB|F1MLY3 581 DCP1B "mRNA-decapping enzyme 1 0.742 0.179 0.336 7.7e-09
MGI|MGI:2442404 578 Dcp1b "DCP1 decapping enzyme h 0.742 0.179 0.318 1.3e-08
RGD|1562214 582 Dcp1b "DCP1 decapping enzyme h 0.742 0.178 0.309 4.4e-08
GENEDB_PFALCIPARUM|PF10_0314 1190 PF10_0314 "asparagine-rich ant 0.835 0.098 0.264 5.3e-08
TAIR|locus:2201821 DCP1 "decapping 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 81/107 (75%), Positives = 91/107 (85%)

Query:     1 MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG 60
             MSQNGK++PNLDQ ST+LL+LTVLQRIDP+IEEILITAAHVTFYEFNI+LSQWSRKDVEG
Sbjct:     1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60

Query:    61 SLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYAN 107
             SLFVVKR+TQPRFQF+VMNRRNT   V   + + EY V     LY N
Sbjct:    61 SLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRN 107
GO:0005634 "nucleus" evidence=ISM
GO:0000932 "cytoplasmic mRNA processing body" evidence=NAS;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0031087 "deadenylation-independent decapping of nuclear-transcribed mRNA" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
FB|FBgn0034921 Dcp1 "Decapping protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2R259 DCP1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IZD4 DCP1B "mRNA-decapping enzyme 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZL6 DCP1B "mRNA-decapping enzyme 1B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LE95 DCP1B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLY3 DCP1B "mRNA-decapping enzyme 1B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2442404 Dcp1b "DCP1 decapping enzyme homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1562214 Dcp1b "DCP1 decapping enzyme homolog b (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0314 PF10_0314 "asparagine-rich antigen" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SJF3DCP1_ARATH3, ., -, ., -, ., -0.75700.76420.2915yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
cd13182116 cd13182, EVH1-like_Dcp1, Decapping enzyme EVH1-lik 8e-31
cd09804121 cd09804, Dcp1, mRNA decapping enzyme 1 (Dcp1) 5e-30
pfam06058123 pfam06058, DCP1, Dcp1-like decapping family 4e-29
>gnl|CDD|241336 cd13182, EVH1-like_Dcp1, Decapping enzyme EVH1-like domain Back     alignment and domain information 
 Score =  106 bits (267), Expect = 8e-31
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 9/114 (7%)

Query: 19  LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
           L+L VLQR DP+IEEIL TA+HV  Y+F+ D ++W + DVEG+LFV KR+  PR+ F+++
Sbjct: 1   LNLRVLQRHDPYIEEILDTASHVVLYKFDPDSNEWEKTDVEGTLFVYKRSAAPRYGFIIL 60

Query: 79  NRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQER 132
           NR +   FV     + ++ + +  +L   N E  ++ +       W FYD  ER
Sbjct: 61  NRLSPENFVEPITPDLDFELQDP-FLIYRNAEGEIYGI-------W-FYDEDER 105

Dcp1 is a small protein containing an EVH1 domain. The Dcp1-Dcp2 complex plays a critical step in mRNA degradation with the removal of the 50 cap structure. Dcp1 stimulates the activity of Dcp2 by promoting and/or stabilizing the closed complex. The interface of Dcp1 and Dcp2 is not fully conserved and in higher eukaryotes it requires an additional factor. The proline-rich sequence (PRS)-binding sites in Dcp1p indicates that it belongs to a novel class of EVH1 domains. Dcp1 has 2 prominent sites,one required for the function of the Dcp1p-Dcp2p complex, and the other, the PRS-binding site of EVH1 domains, a binding site for decapping regulatory proteins. It also has a conserved hydrophobic patch is shown to be critical for decapping. The EVH1 domains are part of the PH domain superamily. Length = 116
>gnl|CDD|197362 cd09804, Dcp1, mRNA decapping enzyme 1 (Dcp1) Back     alignment and domain information
>gnl|CDD|147945 pfam06058, DCP1, Dcp1-like decapping family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 140
PF06058122 DCP1: Dcp1-like decapping family; InterPro: IPR010 100.0
KOG2868 335 consensus Decapping enzyme complex component DCP1 100.0
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 97.59
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 97.48
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 96.47
KOG3671 569 consensus Actin regulatory protein (Wiskott-Aldric 95.7
cd01205105 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. 95.23
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 94.76
smart00160130 RanBD Ran-binding domain. Domain of apporximately 93.59
KOG4693 392 consensus Uncharacterized conserved protein, conta 87.12
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 81.24
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 80.88
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping Back     alignment and domain information 
Probab=100.00  E-value=4.8e-50  Score=296.81  Aligned_cols=117  Identities=37%  Similarity=0.724  Sum_probs=107.2

Q ss_pred             hhhhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEEccC
Q 047699           13 QQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSIS   92 (140)
Q Consensus        13 ~~~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~l~~   92 (140)
                      .+++++|||+||||+||+|++||++|+|||||+||+++++|+|+|||||||||+|+..|+|+++||||+|++||+++|++
T Consensus         1 ~~~~~~lnl~vL~r~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~i~~   80 (122)
T PF06058_consen    1 KRTRNELNLRVLQRYDPSIESILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEPITP   80 (122)
T ss_dssp             HHHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEEE-S
T ss_pred             CchHHHHhHHHHhhhCchHHHHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeeecCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhhh
Q 047699           93 NEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLF  138 (140)
Q Consensus        93 ~~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~~  138 (140)
                      ++++++++|||+||++++++ +       ||| ||+++||++|++-
T Consensus        81 ~~~~e~~~~~l~~r~~~~~I-~-------GiW-f~~~~d~~ri~~~  117 (122)
T PF06058_consen   81 DLDFELQDPYLIYRNDNQEI-Y-------GIW-FYDDEDRQRIYNL  117 (122)
T ss_dssp             GGGEEEETTEEEEEETTTEE-E-------EEE-ESSHHHHHHHHHH
T ss_pred             CcEEEEeCCEEEEEcCCceE-E-------EEE-EEeHHHHHHHHHH
Confidence            99999999999999888766 5       999 9999999999863

In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification] Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd01205 WASP WASP-type EVH1 domain Back     alignment and domain information
>cd00835 RanBD Ran-binding domain Back     alignment and domain information
>smart00160 RanBD Ran-binding domain Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
2lyd_A134 The Solution Structure Of The Dm Dcp1 Evh1 Domain I 1e-12
2qkl_A127 The Crystal Structure Of Fission Yeast Mrna Decappi 8e-06
>pdb|2LYD|A Chain A, The Solution Structure Of The Dm Dcp1 Evh1 Domain In Complex With The Xrn1 Dbm Peptide Length = 134 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 5  GKLMPNL-DQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLF 63
          G  M +L   +S   ++L  +++IDP+ +EI+ +++HV FY FN   ++W + DVEG+ F
Sbjct: 1  GPHMADLMADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFF 60
Query: 64 VVKRNTQPRFQFVVMNRRNTGWFV 87
          +  RN +P     + NR NT  FV
Sbjct: 61 IYHRNAEPFHSIFINNRLNTTSFV 84
>pdb|2QKL|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme Dcp1-Dcp2 Complex Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
2qkl_A127 DCP1 protein, SPBC3B9.21 protein; protein-protein 2e-23
1q67_A231 Decapping protein involved in mRNA degradation- DC 2e-16
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A* Length = 127 Back     alignment and structure
 Score = 87.7 bits (217), Expect = 2e-23
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 13  QQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPR 72
                 ++L VL+   P IE I+  A+HV  Y+F++   +W +  +EG+ F+VK   + R
Sbjct: 5   NILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKD-QRAR 63

Query: 73  FQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQER 132
             +V++NR +     +        ++   +YL        V  +       W  +D  + 
Sbjct: 64  VGYVILNRNSPENLYLFINHPSNVHL-VDRYLIHRTENQHVVGL-------W-MFDPNDM 114
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7 Length = 231 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
2lyd_A134 Decapping protein 1; DCP1, XRN1, transcription-pro 100.0
2qkl_A127 DCP1 protein, SPBC3B9.21 protein; protein-protein 100.0
1q67_A231 Decapping protein involved in mRNA degradation- DC 100.0
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 96.66
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 96.52
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 96.27
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 95.98
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 95.92
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 95.44
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 94.75
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 93.84
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 93.48
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 89.36
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 87.82
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 87.16
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 86.71
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 85.98
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 84.59
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 83.45
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=5.9e-50  Score=299.65  Aligned_cols=118  Identities=31%  Similarity=0.575  Sum_probs=113.3

Q ss_pred             chhhhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEEcc
Q 047699           12 DQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSI   91 (140)
Q Consensus        12 ~~~~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~l~   91 (140)
                      ..+++.+|||+||||+||+|++||++|+|||||+||+++++|+|+|||||||||+|+..|+|+|+||||+|++||+++|+
T Consensus         9 ~~~~~~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~~~l~   88 (134)
T 2lyd_A            9 ADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFVEPIT   88 (134)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEEEECC
T ss_pred             ChHHHHhhhHHHHhhhCcHHHHHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCcceeEEcC
Confidence            56777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhhh
Q 047699           92 SNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLF  138 (140)
Q Consensus        92 ~~~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~~  138 (140)
                      ++++++++++||+||++++++ +       ||| ||+++||++|++.
T Consensus        89 ~~~~~e~~~~~li~r~~~~~I-~-------GiW-f~~~~d~~~i~~~  126 (134)
T 2lyd_A           89 GSLELQSQPPFLLYRNERSRI-R-------GFW-FYNSEECDRISGL  126 (134)
T ss_dssp             SSCEEEEETTEEEEEEGGGEE-E-------EEE-ESSHHHHHHHHHH
T ss_pred             CCcEEEeeCCEEEEECCCCcE-E-------EEE-ecChHHHHHHHHH
Confidence            999999999999999988776 5       999 9999999999874
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A* Back     alignment and structure
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 140
d1q67a_207 b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces c 2e-20
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 207 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Dcp1
domain: Dcp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.6 bits (198), Expect = 2e-20
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPR 72
          L+  V+ R DP I+++L    H + Y+++    +W++ + +G L +  R+    
Sbjct: 1  LNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQN 54

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
d1q67a_207 Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 96.69
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 96.33
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 95.96
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 95.2
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 94.51
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 89.36
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 87.87
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 85.08
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Dcp1
domain: Dcp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-43  Score=274.06  Aligned_cols=110  Identities=19%  Similarity=0.439  Sum_probs=102.6

Q ss_pred             ccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCc--------------------------
Q 047699           19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPR--------------------------   72 (140)
Q Consensus        19 lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~--------------------------   72 (140)
                      |||+||||+||+|++||++|+|||||+||+++++|+|++|||+||||+|+..|+                          
T Consensus         1 LNl~vLqR~Dp~I~~IL~~a~hv~vY~f~~~~~~WeK~~vEGtLFVy~R~~~p~~~~lp~~~y~~~~~~~~~~~~~i~~~   80 (207)
T d1q67a_           1 LNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLLPVSPQEVDIFDSQNGSNNIQVN   80 (207)
T ss_dssp             CCHHHHHHHCTTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----------------------------
T ss_pred             CcHHHhhhhChhHHHHHhhCCeEEEEEecCCcCceeecCceeEEEEEEeccccccccCCccchhhhhccccccccccccc
Confidence            799999999999999999999999999999999999999999999999998886                          


Q ss_pred             --------------------------------------eEEEEEecCCCCce---------------------EEEccCC
Q 047699           73 --------------------------------------FQFVVMNRRNTGWF---------------------VVVSISN   93 (140)
Q Consensus        73 --------------------------------------~~liVLNR~s~~n~---------------------~~~l~~~   93 (140)
                                                            |+|+||||++|+||                     +|++++.
T Consensus        81 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygliIlNR~npeNfs~~i~pn~~~~~~~~~~~~~~~E~~~~~  160 (207)
T d1q67a_          81 NGSDNSNRNSSGNGNSYKSNDSLTYNCGKTLSGKDIYNYGLIILNRINPDNFSMGIVPNSVVNKRKVFNAEEDTLNPLEC  160 (207)
T ss_dssp             ---------------------------------CCCCSEEEEEEESSSSCEEEEEECCHHHHHHHHHHCHHHHHHSCCCC
T ss_pred             ccccccccchhcccccccccccccccccccccccccceeeEEEecCCChhhccccccccccccccccccccccccccccc
Confidence                                                  99999999999999                     5556677


Q ss_pred             eeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhh
Q 047699           94 EEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQL  137 (140)
Q Consensus        94 ~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~  137 (140)
                      +++|+++||||||+..+++ +       ||| ||+++||++|++
T Consensus       161 m~~e~~~~~ii~rn~~~eI-~-------GIW-f~~~~dre~i~~  195 (207)
T d1q67a_         161 MGVEVKDELVIIKNLKHEV-Y-------GIW-IHTVSDRQNIYE  195 (207)
T ss_dssp             CEEEEETTEEEEECTTSCE-E-------EEE-ESSHHHHHHHHH
T ss_pred             ceeEecCceEEEEcCCCcE-E-------EEE-EecHHHHHHHHH
Confidence            9999999999999999887 6       999 999999999986
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure