Citrus Sinensis ID: 047708

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLERTRR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccEEcccHHHHHHHHHHccccEEEEccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccHHHHcccccccEEEEEEccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccEEEEccccccccccccccccccccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHcccEEEEccccccccccHHHHccEEEEEEccccccccccccccccccEEEccccccccccccccHHccccEEEEcccccccccccHHHHHHHHHEEEcccccccccHHHHHHHHHHEEEEcccccHHHcHHHHHHHHHccEEcccccccccEccccHHHHHHHccEEEEccccccEEEEccccccccccHHHHHHHHcccEEEEEEcccccccccccHHcccEEEEEEcccccccccccHHHHHHHHEHEcccHHHHHHHHHHccccccHHHHHHHHHEEEHcccccccHcccccccccccccEEEEEcccHHHHHHHccHHHccc
Coil and Loop (DISEMBL)
QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIdggkegyvKMHDVVRYVAQQIASKNKFMIKAGvelkdwpsinkfedltgislmfndihevpdelecPKLQALLLQensllvipdrffqgmkdlkvldmggirgfslpsSLSFLINLRtlslhdcrrfgdlpligeLSLLEILdlsksdvseipisfgrlshlrlldltdcddleliprGVLSRLRKLEELYMSRsfhhwqfegeedsssnakfielgslSRLTSLhihipngkimssdmsfqnltSFSITIGDLAAGFISAAIEVFSRKFKKRCSRamglsqdmRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLERTRR
Flexible Loop (DISEMBL)
QEDYNIPIEVlarygwglrCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLtdcddleliprgVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAmglsqdmriSGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLnslertrr
Low Complexity Region (SEG)
QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKlqalllqensllVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHlrlldltdcddlelIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLERTRR
Disordered region (IsUnstruct)
***YNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE*********KFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLN*******
Disordered Region (DISOPRED)
QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNS******
Disordered Region (DISEMBL)
QEDYNIPIEVLARYGWGLRCLQNVDSV********SAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLERTRR
Disordered Region (DISPRO)
**DYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLERTRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.750	0.302	0.339	1e-30
O81825	919	Probable disease resistan	no	no	0.727	0.314	0.325	1e-26
Q42484	909	Disease resistance protei	no	no	0.627	0.273	0.304	8e-21
Q940K0	889	Probable disease resistan	no	no	0.430	0.192	0.338	3e-18
P60839	884	Probable disease resistan	no	no	0.352	0.158	0.4	2e-17
O64973	889	Disease resistance protei	no	no	0.536	0.239	0.296	6e-17
Q8RXS5	888	Probable disease resistan	no	no	0.465	0.208	0.360	8e-16
Q9LVT4	843	Probable disease resistan	no	no	0.523	0.246	0.288	1e-14
P60838	894	Probable disease resistan	no	no	0.481	0.213	0.310	3e-14
O82484	892	Putative disease resistan	no	no	0.428	0.190	0.333	7e-14

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 151/309 (48%), Gaps = 11/309 (3%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
           EDY+I +  + RY      ++ + S E +     + V +L    LL DG +   VKMHDV
Sbjct: 406 EDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDV 465

Query: 62  VRYVAQQIASKNK----FMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELE--CP 115
           VR  A  I S ++     ++ +G  L+D         L  +SLM N +  +PD +E  C 
Sbjct: 466 VRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCV 525

Query: 116 KLQALLLQENSLLV-IPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCR 173
           K   LLLQ N LL  +P  F Q    L++L++ G R  S PS SL  L +L +L L DC 
Sbjct: 526 KTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCF 585

Query: 174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233
           +   LP +  L+ LE+LDL  + + E P     L   R LDL+    LE IP  V+SRL 
Sbjct: 586 KLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLS 645

Query: 234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM--SSDMSFQN 291
            LE L M+ S + W  +G E     A   E+G L RL  L I + +   +    +   + 
Sbjct: 646 SLETLDMTSSHYRWSVQG-ETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKR 704

Query: 292 LTSFSITIG 300
           L  F + +G
Sbjct: 705 LKKFQLVVG 713

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 147/298 (49%), Gaps = 9/298 (3%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
           EDY+I +  L  Y      L      E       + V  L  S LL DG     VKMHDV
Sbjct: 375 EDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDV 434

Query: 62  VRYVAQQIASKN----KFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-LECPK 116
           VR  A    S        ++ AG  L ++P       +  +SLM N +  +P+  +E  +
Sbjct: 435 VRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVE 494

Query: 117 LQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRF 175
              LLLQ NS +  +P+ F Q   +L++LD+ G+R  +LP S S L +LR+L L +C++ 
Sbjct: 495 TLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKL 554

Query: 176 GDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL 235
            +LP +  L  L+ LDL +S + E+P     LS LR + +++   L+ IP G + +L  L
Sbjct: 555 RNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSL 614

Query: 236 EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLT 293
           E L M+ S + W  +GEE     A   E+  L  L  L I + +  ++S    F +LT
Sbjct: 615 EVLDMAGSAYSWGIKGEE-REGQATLDEVTCLPHLQFLAIKLLD--VLSFSYEFDSLT 669

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 132/286 (46%), Gaps = 37/286 (12%)

Query: 2   EDYNIPIEVLARYGWG---LRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKM 58
           E+++I IE L  Y  G   L     V+++ K        +  L  + LL  G ++  VKM
Sbjct: 416 EEHSIEIEQLVEYWVGEGFLTSSHGVNTIYKGY----FLIGDLKAACLLETGDEKTQVKM 471

Query: 59  HDVVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELE 113
           H+VVR  A  +AS     K   +++  +   + P    +     ISL+ N I  +P++L 
Sbjct: 472 HNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLI 531

Query: 114 CPKLQALLLQEN-SLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDC 172
           CPKL  L+LQ+N SL  IP  FF  M  L+VLD+       +P S+ +L+ L  LS    
Sbjct: 532 CPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLS---- 587

Query: 173 RRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRL 232
                              +S + +S +P   G L  L+ LDL     L+ IPR  +  L
Sbjct: 588 -------------------MSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWL 628

Query: 233 RKLEELYMSRSFHHWQFEG-EEDSSSNAKFIELGSLSRLTSLHIHI 277
            KLE L +  S+  W+ +   ED +    F +L  L  LT+L I +
Sbjct: 629 SKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITV 674

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 99/201 (49%), Gaps = 30/201 (14%)

Query: 27  VEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIAS-----KNKFMIKAGV 81
           +++AR +  + + TL  + LL   G   Y  MHDVVR +A  IAS     K  F+++AGV
Sbjct: 441 IKRARNKGYAMLGTLTRANLLTKVGTY-YCVMHDVVREMALWIASDFGKQKENFVVQAGV 499

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            L + P +  +  +  +SLM NDI E+  E +C +L  L LQ N L  +P  F + M+ L
Sbjct: 500 GLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKL 559

Query: 142 KVLDMGGIRGFS-LPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEI 200
            VLD+   R F+ LP  +S L++                       L+ LDLS + +  +
Sbjct: 560 VVLDLSYNRDFNKLPEQISGLVS-----------------------LQFLDLSNTSIEHM 596

Query: 201 PISFGRLSHLRLLDLTDCDDL 221
           PI    L  L  LDLT  D L
Sbjct: 597 PIGLKELKKLTFLDLTYTDRL 617

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 86/150 (57%), Gaps = 10/150 (6%)

Query: 30  ARGRARSAVSTLIFSYLLIDGGK---EGYVKMHDVVRYVAQQIAS-----KNKFMIKAGV 81
           A G     + TL+ + LL++GGK   + YVKMHDVVR +A  IAS     K+  +++AG 
Sbjct: 447 AVGEGYEILGTLVCASLLVEGGKFNNKSYVKMHDVVREMALWIASDLRKHKDNCIVRAGF 506

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLV-IPDRFFQGMKD 140
            L + P +  ++ ++ +SL+ N I E+    ECPKL  L LQ+N  LV I   FF+ M  
Sbjct: 507 RLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTTLFLQDNRHLVNISGEFFRSMPR 566

Query: 141 LKVLDMGGIRGFS-LPSSLSFLINLRTLSL 169
           L VLD+      S LP  +S L++LR L L
Sbjct: 567 LVVLDLSWNVNLSGLPDQISELVSLRYLDL 596

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 120/266 (45%), Gaps = 53/266 (19%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGK-EGYVKMHD 60
           EDY I  E L  Y      +   +  E+   +    + TL+ + LL++  + +  VKMHD
Sbjct: 420 EDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHD 479

Query: 61  VVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECP 115
           VVR +A  I+S     K K +++AGV L++ P +  +  +  ISLM N+I E+ D  EC 
Sbjct: 480 VVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECA 539

Query: 116 KLQALLLQENSLLVIPDRFFQGMKDLKVLD----------------MGGIRGFSLPSS-- 157
            L  L LQ+N ++ I   FF+ M  L VLD                +  +R F+L  +  
Sbjct: 540 ALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCI 599

Query: 158 -----------------------------LSFLINLRTLSLHDCRRFGDLPLIGELSLLE 188
                                        +S L NLRTL L D R   D+ L+ EL LLE
Sbjct: 600 HQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLE 659

Query: 189 ILDLSKSDVSEIPISFGRLSHLRLLD 214
            L++   D+S   ++   L   RL++
Sbjct: 660 HLEVITLDISSSLVAEPLLCSQRLVE 685

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 9/194 (4%)

Query: 29  KARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIAS-----KNKFMIKAGVEL 83
           KA  +    +  L+ S LL++  +E  VKMHDVVR +A  IAS     K  F+++AG++ 
Sbjct: 443 KAENQGYEIIGILVRSCLLMEENQET-VKMHDVVREMALWIASDFGKQKENFIVQAGLQS 501

Query: 84  KDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKV 143
           ++ P I K++    +SLMFN+I  + D  E P+L  LLL++N L  I   FF+ M  L V
Sbjct: 502 RNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVV 561

Query: 144 LDMGGIRGF-SLPSSLSFLINLRTLSLHDCR-RFGDLPLIGELSLLEILDLSKSDVSEIP 201
           LD+   R    LP+ +S  ++L+ LSL   R R     L+ EL  L  L+L  + + E  
Sbjct: 562 LDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLV-ELRKLLYLNLEYTRMVESI 620

Query: 202 ISFGRLSHLRLLDL 215
                L+ L++L L
Sbjct: 621 CGISGLTSLKVLRL 634

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 35/243 (14%)

Query: 4   YNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVR 63
           Y I  + L  Y  G   +   D  E+A+ R    +  L+ + LL++  K+ Y  MHD++R
Sbjct: 418 YYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLESNKKVY--MHDMIR 475

Query: 64  YVAQQIASK----NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECP---K 116
            +A  I S+     ++++K    L   P +  +  +T +SL  N+I  +PD+ E P    
Sbjct: 476 DMALWIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTN 535

Query: 117 LQALLLQENSLLVIPDRFFQGMKDLKVLDMG-GIRGFSLPSSLSFLINLRTLSLHDCRRF 175
           L  L LQ N L+ I  +FF  M  L VLD+    +   LP  +S L++LR          
Sbjct: 536 LVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLR---------- 585

Query: 176 GDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL 235
                        +L+LS + +  +P   G LS L  L+L    +L  +  G++S L+KL
Sbjct: 586 -------------LLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSV--GLISELQKL 630

Query: 236 EEL 238
           + L
Sbjct: 631 QVL 633

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 31/222 (13%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG-KEGYVKMHD 60
           EDY +  E L  Y      +   +S E+A  +    +  L+ + LL++    +  VKMHD
Sbjct: 419 EDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHD 478

Query: 61  VVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECP 115
           VVR +A  IAS     K + +++ GV L++ P +  +  +  +SLM N+I  +    EC 
Sbjct: 479 VVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECL 538

Query: 116 KLQALLLQEN-SLLVIPDRFFQGMKDLKVLDMGGIRGF-SLPSSLSFLINLRTLSLHDCR 173
           +L  L LQ+N SLL I D FF+ +  L VLD+ G      LP+ +S L++LR        
Sbjct: 539 ELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLR-------- 590

Query: 174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDL 215
                           LDLS + +  +P+    L  LR L L
Sbjct: 591 ---------------YLDLSWTYIKRLPVGLQELKKLRYLRL 617

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 31/201 (15%)

Query: 28  EKARGRARSAVSTLIFSYLLIDGGKEGY-VKMHDVVRYVAQQIAS-----KNKFMIKAGV 81
           E+A  +    + TL+ + LL + GK    VKMHDVVR +A    S     K + +++AG 
Sbjct: 443 ERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGS 502

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQEN-SLLVIPDRFFQGMKD 140
            L+  P +  +  +  +SLM N I E+    ECP+L  L LQEN SL+ I   FF+ M+ 
Sbjct: 503 GLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRK 562

Query: 141 LKVLDMGGIRGF-SLPSSLSFLINLRTLSLH----------------------DC-RRFG 176
           L VLD+        LP  +S L+ LR L L                       +C RR G
Sbjct: 563 LVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLG 622

Query: 177 DLPLIGELSLLEILDLSKSDV 197
            +  I +LS L  L L  S++
Sbjct: 623 SIAGISKLSSLRTLGLRNSNI 643

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
225445915	1063	PREDICTED: disease resistance protein At	0.969	0.362	0.385	1e-60
297735460	1042	unnamed protein product [Vitis vinifera]	0.969	0.369	0.385	1e-60
147832986	975	hypothetical protein VITISV_010740 [Viti	0.969	0.394	0.385	1e-60
297735461	1063	unnamed protein product [Vitis vinifera]	0.969	0.362	0.395	3e-60
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.957	0.288	0.378	3e-60
359487924	1731	PREDICTED: uncharacterized protein LOC10	0.924	0.212	0.390	5e-60
298204946	723	unnamed protein product [Vitis vinifera]	0.924	0.507	0.390	8e-60
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.939	0.220	0.383	1e-59
359494129	1144	PREDICTED: disease resistance protein At	0.969	0.336	0.406	2e-59
449515209	1612	PREDICTED: LOW QUALITY PROTEIN: disease	0.944	0.232	0.389	5e-59

>gi|225445915|ref|XP_002263288.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 227/399 (56%), Gaps = 14/399 (3%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
           ED +I IE L +YG G    Q  +++E+ARGRARS V  L    LL+D  +EG VKMHDV
Sbjct: 415 EDTDISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDV 474

Query: 62  VRYVAQQIASK---NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQ 118
           VR +A  +AS    N FM+++G  LK+WP+ + +E  T ISLM N+I E+PD L CPKLQ
Sbjct: 475 VRDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQ 534

Query: 119 ALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD 177
            LLLQ N+ +  IPD FF     L+VLD+ G    SLP SL  L +LRTL L  C+   D
Sbjct: 535 TLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITD 594

Query: 178 LPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEE 237
           + ++G+L  LEIL L +S + ++P    +L++LR+LD T  ++++ IP  V+S L +LEE
Sbjct: 595 ISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEE 654

Query: 238 LYMSRSFHHWQFEGEEDSS-SNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQ-NLTSF 295
           +YM  SF  W    E  SS +NA F EL  L RL  L + I + + M   + F  N  +F
Sbjct: 655 MYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNF 714

Query: 296 SITIG-DLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLL-RSEILAL 353
            I I   L   F++  +   +       +R+  L  D+ I+ +  W   +   R+E L  
Sbjct: 715 DICINRKLFNRFMNVHLSRVT------AARSRSLILDVTINTLPDWFNKVATERTEKLYY 768

Query: 354 VDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSL 392
           +    L+NI+ +      N L  L +  C+++  L++++
Sbjct: 769 IKCRGLDNILMEYDQGSLNGLKILLVQSCHQIVHLMDAV 807

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735460|emb|CBI17900.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 227/399 (56%), Gaps = 14/399 (3%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
           ED +I IE L +YG G    Q  +++E+ARGRARS V  L    LL+D  +EG VKMHDV
Sbjct: 415 EDTDISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDV 474

Query: 62  VRYVAQQIASK---NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQ 118
           VR +A  +AS    N FM+++G  LK+WP+ + +E  T ISLM N+I E+PD L CPKLQ
Sbjct: 475 VRDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQ 534

Query: 119 ALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD 177
            LLLQ N+ +  IPD FF     L+VLD+ G    SLP SL  L +LRTL L  C+   D
Sbjct: 535 TLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITD 594

Query: 178 LPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEE 237
           + ++G+L  LEIL L +S + ++P    +L++LR+LD T  ++++ IP  V+S L +LEE
Sbjct: 595 ISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEE 654

Query: 238 LYMSRSFHHWQFEGEEDSS-SNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQ-NLTSF 295
           +YM  SF  W    E  SS +NA F EL  L RL  L + I + + M   + F  N  +F
Sbjct: 655 MYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNF 714

Query: 296 SITIG-DLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLL-RSEILAL 353
            I I   L   F++  +   +       +R+  L  D+ I+ +  W   +   R+E L  
Sbjct: 715 DICINRKLFNRFMNVHLSRVT------AARSRSLILDVTINTLPDWFNKVATERTEKLYY 768

Query: 354 VDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSL 392
           +    L+NI+ +      N L  L +  C+++  L++++
Sbjct: 769 IKCRGLDNILMEYDQGSLNGLKILLVQSCHQIVHLMDAV 807

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832986|emb|CAN77367.1| hypothetical protein VITISV_010740 [Vitis vinifera]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 227/399 (56%), Gaps = 14/399 (3%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
           ED +I IE L +YG G    Q  +++E+ARGRARS V  L    LL+D  +EG VKMHDV
Sbjct: 324 EDTDISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDV 383

Query: 62  VRYVAQQIASK---NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQ 118
           VR +A  +AS    N FM+++G  LK+WP+ + +E  T ISLM N+I E+PD L CPKLQ
Sbjct: 384 VRDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQ 443

Query: 119 ALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD 177
            LLLQ N+ +  IPD FF     L+VLD+ G    SLP SL  L +LRTL L  C+   D
Sbjct: 444 TLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITD 503

Query: 178 LPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEE 237
           + ++G+L  LEIL L +S + ++P    +L++LR+LD T  ++++ IP  V+S L +LEE
Sbjct: 504 ISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEE 563

Query: 238 LYMSRSFHHWQFEGEEDSS-SNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQ-NLTSF 295
           +YM  SF  W    E  SS +NA F EL  L RL  L + I + + M   + F  N  +F
Sbjct: 564 MYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNF 623

Query: 296 SITIG-DLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLL-RSEILAL 353
            I I   L   F++  +   +       +R+  L  D+ I+ +  W   +   R+E L  
Sbjct: 624 DICINRKLFNRFMNVHLSRVT------AARSRSLILDVTINTLPDWFNKVATERTEKLYY 677

Query: 354 VDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSL 392
           +    L+NI+ +      N L  L +  C+++  L++++
Sbjct: 678 IXCRGLDNILMEYDQGSLNGLKILLVQXCHQIVHLMDAV 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735461|emb|CBI17901.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/399 (39%), Positives = 229/399 (57%), Gaps = 14/399 (3%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
           ED +I IE L +YG G    Q  +++E+ARGRARS V  L    LL+D  +EG VKMHDV
Sbjct: 415 EDTDISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDV 474

Query: 62  VRYVAQQIAS---KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQ 118
           VR +A  + S    N FM+++G  LK WP+ + +E  T ISLM N+I E+PD L CPKLQ
Sbjct: 475 VRDMAILLVSSEDNNAFMVQSGSALKVWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQ 534

Query: 119 ALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD 177
            LLLQ N+ +  IPD FF     L+VLD+ G    SLP SL  L +LRTL L  C+   D
Sbjct: 535 TLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITD 594

Query: 178 LPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEE 237
           + ++G+L  LEIL L +S + ++P    +L++LR+LD T  ++++ IP  V+S L +LEE
Sbjct: 595 ISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEE 654

Query: 238 LYMSRSFHHWQFEGEEDSS-SNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQ-NLTSF 295
           +YM  SF  W    E  SS +NA F EL  L RL  L + I + + M   + F  N  +F
Sbjct: 655 MYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNF 714

Query: 296 SITIG-DLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLL-RSEILAL 353
            I I   L   F++  +   SR    R SRA+ L  D+ I+ +  W   +   R+E L  
Sbjct: 715 DICISRKLFTRFMNVHL---SRVTAAR-SRALIL--DVTINTLPDWFNKVATERTEKLYY 768

Query: 354 VDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSL 392
           ++   L+NI+ +      N L  L +  C+++  L++++
Sbjct: 769 IECRGLDNILMEYDQGSLNGLKILLVQSCHQIVHLMDAV 807

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 150/396 (37%), Positives = 229/396 (57%), Gaps = 16/396 (4%)

Query: 5   NIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRY 64
           NI I  L RYG GL   +   ++E+ R    + V  L  S LL++G K+G VKMHDVV  
Sbjct: 407 NILISDLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHS 466

Query: 65  VAQQIASKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQA-LLLQ 123
            A  +A ++  ++    E K+WP+ +  +  T ISL F  I ++P  LECP L + LLL 
Sbjct: 467 FAISVALRDHHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLN 526

Query: 124 ENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGE 183
           ++  L IPD FF+ MK+LK+LD+  +    LPSSL FL NL+TL L  C    D+ +IGE
Sbjct: 527 KDPSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCV-LEDISIIGE 585

Query: 184 LSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRS 243
           L+ L++L L  S++  +P   G+++ L+LLDL++C+ LE+I    LS L +LE+LYM  S
Sbjct: 586 LNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGNS 645

Query: 244 FHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDM--SFQNLTSFSITIGD 301
           F  W+ EG     +NA   EL  LS L++LH+ I +   M  D+  SFQNL  F I IGD
Sbjct: 646 FVKWETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGD 705

Query: 302 LAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLEN 361
              G+  +  +  SR  K + +  + L +     GV++ +K     +E L L ++N +++
Sbjct: 706 ---GWDWSVKDATSRTLKLKLNTVIQLEE-----GVNTLLK----ITEELHLQELNGVKS 753

Query: 362 IVSDLANDGFNELMFLGIFGCNEMKCLLNSLERTRR 397
           I++DL  +GF +L  L +  C  ++ ++NS+    R
Sbjct: 754 ILNDLDGEGFPQLRHLHVQNCPGVQYIINSIRMGPR 789

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487924|ref|XP_003633676.1| PREDICTED: uncharacterized protein LOC100246921 [Vitis vinifera]

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 224/392 (57%), Gaps = 25/392 (6%)

Query: 5    NIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDG--GKEGYVKMHDVV 62
            NI +++L  Y  GL     +DS+E+AR R  + V  L  S LL+D    ++ +V+MHDVV
Sbjct: 1144 NISLDLLLPYAMGLDLFDRIDSLEQARNRLLALVEILKASSLLLDSHEDRDKFVRMHDVV 1203

Query: 63   RYVAQQIASKNK--FMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQAL 120
              V ++IASK+   F+++  V L++W   ++ +  T ISL    +HE+P  L CP LQ  
Sbjct: 1204 CNVVREIASKDPHPFVVREDVGLEEWSETDESKSYTFISLHCKAVHELPQGLVCPDLQFF 1263

Query: 121  LLQENSL-LVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP 179
             L  N+  L IP+ FF+GMK LKVLD+  +R   LPSSL  L NL+TL L  C+   D+ 
Sbjct: 1264 QLHNNNPSLNIPNTFFEGMKKLKVLDLSKMRFTVLPSSLDSLTNLQTLRLDGCK-LEDIA 1322

Query: 180  LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
            LIG+L+ LE+L L  S + ++P    +L++LRLLDL DC +LE+IP+ +LS L +LE LY
Sbjct: 1323 LIGKLTKLEVLSLMGSTIQQLPNEMVQLTNLRLLDLNDCKELEVIPQNILSSLSRLECLY 1382

Query: 240  MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITI 299
            M  SF  W  EGE    SNA   EL  LS LT+L I IPN K++  D+ F+NLT + I I
Sbjct: 1383 MKSSFTQWAVEGE----SNACLSELNHLSHLTTLEIDIPNAKLLPKDILFENLTRYGIFI 1438

Query: 300  GDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDL 359
            G ++ G               R  RA+ L +  R   +   +  LL RSE L    ++  
Sbjct: 1439 G-VSGGL--------------RTKRALNLYEVNRSLHLGDGMSKLLERSEELQFYKLSGT 1483

Query: 360  ENIVSDLANDGFNELMFLGIFGCNEMKCLLNS 391
            + ++     + F EL  L +F   E++ +++S
Sbjct: 1484 KYVLYPSDRESFRELKHLQVFNSPEIQYIIDS 1515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204946|emb|CBI34253.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 224/392 (57%), Gaps = 25/392 (6%)

Query: 5   NIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDG--GKEGYVKMHDVV 62
           NI +++L  Y  GL     +DS+E+AR R  + V  L  S LL+D    ++ +V+MHDVV
Sbjct: 291 NISLDLLLPYAMGLDLFDRIDSLEQARNRLLALVEILKASSLLLDSHEDRDKFVRMHDVV 350

Query: 63  RYVAQQIASKNK--FMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQAL 120
             V ++IASK+   F+++  V L++W   ++ +  T ISL    +HE+P  L CP LQ  
Sbjct: 351 CNVVREIASKDPHPFVVREDVGLEEWSETDESKSYTFISLHCKAVHELPQGLVCPDLQFF 410

Query: 121 LLQENSL-LVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP 179
            L  N+  L IP+ FF+GMK LKVLD+  +R   LPSSL  L NL+TL L  C+   D+ 
Sbjct: 411 QLHNNNPSLNIPNTFFEGMKKLKVLDLSKMRFTVLPSSLDSLTNLQTLRLDGCK-LEDIA 469

Query: 180 LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
           LIG+L+ LE+L L  S + ++P    +L++LRLLDL DC +LE+IP+ +LS L +LE LY
Sbjct: 470 LIGKLTKLEVLSLMGSTIQQLPNEMVQLTNLRLLDLNDCKELEVIPQNILSSLSRLECLY 529

Query: 240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITI 299
           M  SF  W  EGE    SNA   EL  LS LT+L I IPN K++  D+ F+NLT + I I
Sbjct: 530 MKSSFTQWAVEGE----SNACLSELNHLSHLTTLEIDIPNAKLLPKDILFENLTRYGIFI 585

Query: 300 GDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDL 359
           G      +S  +         R  RA+ L +  R   +   +  LL RSE L    ++  
Sbjct: 586 G------VSGGL---------RTKRALNLYEVNRSLHLGDGMSKLLERSEELQFYKLSGT 630

Query: 360 ENIVSDLANDGFNELMFLGIFGCNEMKCLLNS 391
           + ++     + F EL  L +F   E++ +++S
Sbjct: 631 KYVLYPSDRESFRELKHLQVFNSPEIQYIIDS 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 152/396 (38%), Positives = 231/396 (58%), Gaps = 23/396 (5%)

Query: 6   IPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYV 65
           I I  L +YG GLR  Q  +++E+A+ R  + V  L  S LL++ G    V+MHDVVR V
Sbjct: 412 IYIRDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSV 471

Query: 66  AQQIASKNKFMI---KAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALL- 121
           A  I+SK+  +    +    ++ WP I++ + +  ++    DIHE+P+ L CPKL+  + 
Sbjct: 472 ALDISSKDHHVFTLQQTTGRVEKWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKLFIC 531

Query: 122 -LQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL 180
            L+ NS + IP+ FF+GMK L+VLD   +   SLPSSL  L NL+TL L+ C+  GD+ +
Sbjct: 532 CLKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYGCK-LGDIGI 590

Query: 181 IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240
           I EL  LEIL L  SD+ ++P    +L+HLRLLDL+D   +++IP GV+S L +LE+L M
Sbjct: 591 ITELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDLCM 650

Query: 241 SRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIG 300
             SF  W+ EG+    SNA   EL  LS LTSL I IP+ K++  D+ F+NL  + I +G
Sbjct: 651 ENSFTQWEGEGK----SNACLAELKHLSHLTSLDIQIPDAKLLPKDVVFENLVRYRIFVG 706

Query: 301 DLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDL 359
           D         + ++   +K   +R + L + D  +  V   I  LL  +E L L ++   
Sbjct: 707 D---------VWIWEENYK--TNRTLKLKKFDTSLHLVDG-ISKLLKITEDLHLRELCGG 754

Query: 360 ENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLERT 395
            N++S L  +GF +L  L +    E++ ++NSL+ T
Sbjct: 755 TNVLSKLDGEGFFKLKHLNVESSPEIQYIVNSLDLT 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494129|ref|XP_002278428.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 165/406 (40%), Positives = 221/406 (54%), Gaps = 21/406 (5%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGK-EGYVKMHD 60
           ED NI +E L R   G   L++V++VE+ R R R+ +  L  S LL+DG K +G +KMHD
Sbjct: 410 EDRNIELEYLTRLAMGQGLLEDVETVEEGRRRVRTLIKGLKASCLLMDGDKSKGSLKMHD 469

Query: 61  VVRYVAQQIASKNK--FMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQ 118
           +VR  A  I S  K  FM+KAGV LK+WP    FE    ISLM N+I  +P  LECPKL 
Sbjct: 470 LVRVFAISITSTEKYAFMVKAGVGLKNWPKKGTFEHYALISLMANNISSLPVGLECPKLH 529

Query: 119 ALLLQEN-SLLVIPDRFFQGMKDLKVLDMGGIRG---------FSLPSSLSFLINLRTLS 168
            LLL  N  L + PD FF GMK LKVLD+  I             LP+SL  L +LR L 
Sbjct: 530 TLLLGGNRGLKIFPDAFFVGMKTLKVLDLTAISKKLYRYSLHITPLPASLQLLTDLRMLH 589

Query: 169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGV 228
           LH  R+ GD+ ++G+L  LEIL    S +SE+P   G L +L+LLDLT C  L+ IP  +
Sbjct: 590 LHH-RKLGDISILGKLKKLEILSFFASHISELPKEMGELKNLKLLDLTYCRSLKKIPPNL 648

Query: 229 LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS 288
           +S L  LEELYM  SF  W   G     S+A   EL SL  LT+LH+ I N K + +   
Sbjct: 649 ISGLSALEELYMRGSFQQWDVGGTTIERSSASLSELNSLLNLTTLHVEIINAKCIPNSFL 708

Query: 289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRS 348
           F N   F I IG         +   F+RK K     +  L      S +   +K L  R+
Sbjct: 709 FPNQLRFQIYIGS------KLSFATFTRKLKYDYPTSKALELKGIDSPIPIGVKMLFERT 762

Query: 349 EILALVD-VNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLE 393
           E L+L+  +    NI+ +L + GFN L  L +  C E +C++++ +
Sbjct: 763 EDLSLISLLEGSRNILPNLGSRGFNGLTSLSVRNCVEFECIIDTTQ 808

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515209|ref|XP_004164642.1| PREDICTED: LOW QUALITY PROTEIN: disease resistance protein At4g27190-like [Cucumis sativus]

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 225/393 (57%), Gaps = 18/393 (4%)

Query: 2   EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
           EDY I I+ L  Y  GL  L  + S+  A+ R  S V  L  S+LL+DG    +VKMHD+
Sbjct: 381 EDYQINIKYLLMYAMGLGLLNAMSSLAMAKWRILSLVDELKTSHLLLDGVDNDFVKMHDI 440

Query: 62  VRYVAQQIASK--NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQA 119
           VR  A  IASK  +K++++ G     WP +++F+D T ISL  +D  E+P E  CP+L+ 
Sbjct: 441 VRDTAILIASKMKSKYLVRHGAGESLWPPMDEFKDYTAISLGCSDHSELP-EFICPQLRF 499

Query: 120 LLL-QENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDL 178
           LLL  + + L +P++FF GM++L+VLD+ G+    LP S+  L+NL+TL L DC    D+
Sbjct: 500 LLLVGKRTSLRLPEKFFAGMQELRVLDLTGLCIQRLPPSIDQLVNLQTLCLDDCV-LPDM 558

Query: 179 PLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL 238
            ++GEL  LEIL L  SD+  +P   G L++L++L+L+DC  L++IP  +LSRL  L EL
Sbjct: 559 SVVGELKKLEILSLRASDIIALPRVIGELTNLKMLNLSDCSKLKVIPANLLSRLIGLSEL 618

Query: 239 YMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSIT 298
           YM  SF HW   G+ +   NA+  EL +L RLT+LH+HIPN  I+     F+ L+ + I 
Sbjct: 619 YMDNSFKHWNV-GQMEGYVNARISELDNLPRLTTLHVHIPNPTILPHAFVFRKLSGYRIL 677

Query: 299 IGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVND 358
           IGD            +        SR + L  D  I    + I+ LL   E L L ++  
Sbjct: 678 IGDR-----------WDWSGNYETSRTLKLKLDSSIQREDA-IQALLENIEDLYLDELES 725

Query: 359 LENIVSDLANDGFNELMFLGIFGCNEMKCLLNS 391
           ++NI+  L   GF +L  L +    E+  ++NS
Sbjct: 726 VKNILFSLDYKGFPKLKCLRVKNNGEIVTVVNS 758

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.909	0.366	0.289	3.9e-27
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.725	0.313	0.301	8.9e-25
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.476	0.213	0.339	8.2e-14
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.483	0.213	0.330	1.5e-12
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.488	0.218	0.326	1.5e-11
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.493	0.220	0.299	2.5e-11
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.476	0.248	0.315	1.6e-09
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.488	0.230	0.285	1.8e-09
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.415	0.170	0.308	4.7e-09
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.473	0.210	0.311	4.8e-09

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
 Identities = 113/391 (28%), Positives = 173/391 (44%)

Query:     2 EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
             EDY+I +  + RY      ++ + S E +     + V +L    LL DG +   VKMHDV
Sbjct:   406 EDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDV 465

Query:    62 VRYVAQQIASKNK----FMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELE--CP 115
             VR  A  I S ++     ++ +G  L+D         L  +SLM N +  +PD +E  C 
Sbjct:   466 VRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCV 525

Query:   116 KXXXXXXXXXXXXV-IPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCR 173
             K              +P  F Q    L++L++ G R  S PS SL  L +L +L L DC 
Sbjct:   526 KTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCF 585

Query:   174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHXXXXXXXXXXXXXXIPRGVLSRLR 233
             +   LP +  L+ LE+LDL  + + E P     L                IP  V+SRL 
Sbjct:   586 KLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLS 645

Query:   234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS--FQN 291
              LE L M+ S + W  +GE      A   E+G L RL  L I + +   + +  +   + 
Sbjct:   646 SLETLDMTSSHYRWSVQGETQKGQ-ATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKR 704

Query:   292 LTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVH-SWIKNLLLRSEI 350
             L  F + +G   + +I     + +R  K+R +    +S  + +S V   W   LL  +  
Sbjct:   705 LKKFQLVVG---SRYI-----LRTRHDKRRLT----ISH-LNVSQVSIGW---LLAYTTS 748

Query:   351 LALVDVNDLENIVSDLAND--GFNELMFLGI 379
             LAL     +E ++  L +D  GF  L  L I
Sbjct:   749 LALNHCQGIEAMMKKLVSDNKGFKNLKSLTI 779

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
 Identities = 90/299 (30%), Positives = 139/299 (46%)

Query:     2 EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
             EDY+I +  L  Y      L      E       + V  L  S LL DG     VKMHDV
Sbjct:   375 EDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDV 434

Query:    62 VR-YVAQQIASKNK-F--MIKAGVELKDWPSINKF-EDLTGISLMFNDIHEVPDELECPK 116
             VR +    ++S+ + F  ++ AG  L ++P  +KF   +  +SLM N +  +P+ +    
Sbjct:   435 VRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQ-DKFVSSVQRVSLMANKLERLPNNVIEGV 493

Query:   117 XXXXXXXXXXXXV--IPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRR 174
                         V  +P+ F Q   +L++LD+ G+R  +LP S S L +LR+L L +C++
Sbjct:   494 ETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKK 553

Query:   175 FGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHXXXXXXXXXXXXXXIPRGVLSRLRK 234
               +LP +  L  L+ LDL +S + E+P     LS               IP G + +L  
Sbjct:   554 LRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSS 613

Query:   235 LEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLT 293
             LE L M+ S + W  +GEE     A   E+  L  L  L I + +  ++S    F +LT
Sbjct:   614 LEVLDMAGSAYSWGIKGEE-REGQATLDEVTCLPHLQFLAIKLLD--VLSFSYEFDSLT 669

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 8.2e-14, P = 8.2e-14
 Identities = 69/203 (33%), Positives = 102/203 (50%)

Query:     2 EDYNIPIEVLARYGWGLRCLQNVDSVEK-ARGRARSAVSTLIFSYLLIDGGK---EGYVK 57
             ED  I  E L  Y W      + D  +K A G     + TL+ + LL++GGK   + YVK
Sbjct:   419 EDDLIEKERLIDY-WICEGFIDGDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSYVK 477

Query:    58 MHDVVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDEL 112
             MHDVVR +A  IAS     K+  +++AG  L + P +  ++ ++ +SL+ N I E+    
Sbjct:   478 MHDVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSP 537

Query:   113 ECPKXXXXXXXXXXXXV-IPDRFFQGMKDLKVLDMG-GIRGFSLPSSLSFLINLRTLSLH 170
             ECPK            V I   FF+ M  L VLD+   +    LP  +S L++LR L L 
Sbjct:   538 ECPKLTTLFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDL- 596

Query:   171 DCRRFGDLPLIGELSLLEILDLS 193
                  G LP +G L L +++ L+
Sbjct:   597 SYSSIGRLP-VGLLKLKKLMHLN 618

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 67/203 (33%), Positives = 100/203 (49%)

Query:     2 EDYNIPIEVLARYGWGLRCLQNVDSV-EKARGRARSAVSTLIFSYLLIDGGKEGYVKMHD 60
             ED  I  E L  Y W        D V ++AR +  + + TL  + LL   G   Y  MHD
Sbjct:   416 EDGEIYNEKLIDY-WICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTY-YCVMHD 473

Query:    61 VVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECP 115
             VVR +A  IAS     K  F+++AGV L + P +  +  +  +SLM NDI E+  E +C 
Sbjct:   474 VVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCS 533

Query:   116 KXXXXXXXXXXXXVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTLSLHDCRR 174
             +             +P  F + M+ L VLD+   R F+ LP  +S L++L+ L L +   
Sbjct:   534 ELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTS- 592

Query:   175 FGDLPL-IGELSLLEILDLSKSD 196
                +P+ + EL  L  LDL+ +D
Sbjct:   593 IEHMPIGLKELKKLTFLDLTYTD 615

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 67/205 (32%), Positives = 101/205 (49%)

Query:     2 EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDV 61
             ED+NI    L  Y  G   +    +  KA  +    +  L+ S LL++  +E  VKMHDV
Sbjct:   418 EDHNIEKNDLVDYWIGEGFIDR--NKGKAENQGYEIIGILVRSCLLMEENQET-VKMHDV 474

Query:    62 VRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPK 116
             VR +A  IAS     K  F+++AG++ ++ P I K++    +SLMFN+I  + D  E P+
Sbjct:   475 VREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQ 534

Query:   117 XXXXXXXXXXXXVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTLSLHDCR-R 174
                          I   FF+ M  L VLD+   R    LP+ +S  ++L+ LSL   R R
Sbjct:   535 LITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIR 594

Query:   175 FGDLPLIGELSLLEILDLSKSDVSE 199
                  L+ EL  L  L+L  + + E
Sbjct:   595 IWPAGLV-ELRKLLYLNLEYTRMVE 618

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 62/207 (29%), Positives = 101/207 (48%)

Query:     2 EDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGK-EGYVKMHD 60
             EDY I  E L  Y      +   +  E+   +    + TL+ + LL++  + +  VKMHD
Sbjct:   420 EDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHD 479

Query:    61 VVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECP 115
             VVR +A  I+S     K K +++AGV L++ P +  +  +  ISLM N+I E+ D  EC 
Sbjct:   480 VVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECA 539

Query:   116 KXXXXXXXXXXXXVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTLSL-HDCR 173
                           I   FF+ M  L VLD+   +  + LP  +S L +LR  +L + C 
Sbjct:   540 ALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTC- 598

Query:   174 RFGDLPLIGELSLLEILDLSKSDVSEI 200
                 LP +G  +L +++ L+   +S +
Sbjct:   599 -IHQLP-VGLWTLKKLIHLNLEHMSSL 623

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 63/200 (31%), Positives = 95/200 (47%)

Query:     2 EDYNIPIEVLARYGWGLRCLQNVDSV-EKARGRARSAVSTLIFSYLLIDGGKEGYVKMHD 60
             ED  I  E L  Y W        D V ++AR +    + TL  + LL   G E +V MHD
Sbjct:   305 EDDEIYNEKLIDY-WICEGFIGEDQVIKRARNKGYEMLGTLTLANLLTKVGTE-HVVMHD 362

Query:    61 VVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECP 115
             VVR +A  IAS     K  F+++A V L + P    +  +  +SLM N I E+  E +C 
Sbjct:   363 VVREMALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCS 422

Query:   116 KXXXXXXXXXXXXVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTLSLHDCRR 174
             +             +   F + M+ L VLD+   R F+ LP  +S L++L+ L L +   
Sbjct:   423 ELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTS- 481

Query:   175 FGDLPL-IGELSLLEILDLS 193
                LP+ + +L  L  L+L+
Sbjct:   482 IKQLPVGLKKLKKLTFLNLA 501

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 59/207 (28%), Positives = 97/207 (46%)

Query:     4 YNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVR 63
             Y I  + L  Y  G   +   D  E+A+ R    +  L+ + LL++  K+ Y  MHD++R
Sbjct:   418 YYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLESNKKVY--MHDMIR 475

Query:    64 YVAQQIASK----NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKXXX 119
              +A  I S+     ++++K    L   P +  +  +T +SL  N+I  +PD+ E P    
Sbjct:   476 DMALWIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTN 535

Query:   120 XXXXXXXXXVIPD---RFFQGMKDLKVLDMG-GIRGFSLPSSLSFLINLRTLSLHDCRRF 175
                       + D   +FF  M  L VLD+    +   LP  +S L++LR L+L      
Sbjct:   536 LVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLRLLNLSGTS-I 594

Query:   176 GDLPL-IGELSLLEILDL-SKSDVSEI 200
               LP  +G LS L  L+L S S++  +
Sbjct:   595 KHLPEGLGVLSKLIHLNLESTSNLRSV 621

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 54/175 (30%), Positives = 89/175 (50%)

Query:    27 VEKARGRARSAVSTLIFSYLLID--GGKEGYVKMHDVVRYVAQQIAS-----KNKFMIKA 79
             +++AR +    + TLI + LL +  G  + +V MHDVVR +A  IAS     K  ++++A
Sbjct:   442 IKRARNKGYEMLGTLIRANLLTNDRGFVKWHVVMHDVVREMALWIASDFGKQKENYVVRA 501

Query:    80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKXXXXXXXXXXXXVIPDRFFQGMK 139
              V L + P +  +  +  +SLM N+I E+  E +C +             +   F + M+
Sbjct:   502 RVGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQ 561

Query:   140 DLKVLDMGGIRGFS-LPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDL 192
              L VLD+     F+ LP  +S L++L+ L L    R   LP+ + EL  L  L+L
Sbjct:   562 KLVVLDLSHNPDFNELPEQISGLVSLQYLDL-SWTRIEQLPVGLKELKKLIFLNL 615

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
 Identities = 63/202 (31%), Positives = 97/202 (48%)

Query:     2 EDYNIPIEVLARYGWGLR-CLQNVDSVEKARGRARSAVSTLIFSYLLIDGG--KEGYVKM 58
             EDY +  E L  Y W     +   +S E+A  +    +  L+ + LL++    KE  VKM
Sbjct:   419 EDYRMEKERLIDY-WICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKE-QVKM 476

Query:    59 HDVVRYVAQQIAS-----KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELE 113
             HDVVR +A  IAS     K + +++ GV L++ P +  +  +  +SLM N+I  +    E
Sbjct:   477 HDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPE 536

Query:   114 CPKXXXXXXXXXXXXV-IPDRFFQGMKDLKVLDMGGIRGF-SLPSSLSFLINLRTLSLHD 171
             C +            + I D FF+ +  L VLD+ G      LP+ +S L++LR L L  
Sbjct:   537 CLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDL-S 595

Query:   172 CRRFGDLPL-IGELSLLEILDL 192
                   LP+ + EL  L  L L
Sbjct:   596 WTYIKRLPVGLQELKKLRYLRL 617

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 144 LDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSKSDVS-EIP 201
           LD  G+RGF +P+ +S L +L++++L      G++P  +G ++ LE+LDLS +  +  IP
Sbjct: 425 LDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 202 ISFGRLSHLRLLDLTD 217
            S G+L+ LR+L+L  
Sbjct: 484 ESLGQLTSLRILNLNG 499

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDM 146
            +    +L  + L FND+ ++P  L     L  L L  N +  +P    + +  L+ LD+
Sbjct: 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDL 216

Query: 147 GGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGR 206
                  L SSLS L NL  L L + +       IG LS LE LDLS + +S I  S G 
Sbjct: 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS-SLGS 275

Query: 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL 238
           L++LR LDL+       +P   L  L     L
Sbjct: 276 LTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 187 LEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           L+ LDLS + ++ IP  +F  L +L++LDL+  + L  I     S L  L  L +S 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 116 KLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCR 173
            L++L L  N L VIPD  F+G+ +LKVLD+ G  +   S P + S L +LR+L L    
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 26/174 (14%)

Query: 107 EVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDM------GGI--RGFSLPSS 157
           E+P  L  C  L+ + LQ+NS        F  +  +  LD+      G I  R + +PS 
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS- 453

Query: 158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE-IPISFGRLSHLRLLDLT 216
                 L+ LSL   + FG LP       LE LDLS++  S  +P   G LS L  L L+
Sbjct: 454 ------LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 217 DCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRL 270
           +      IP   LS  +KL  L +S    H Q  G+  +S    F E+  LS+L
Sbjct: 508 ENKLSGEIPDE-LSSCKKLVSLDLS----HNQLSGQIPAS----FSEMPVLSQL 552

Length = 968

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRR 174
           PKL+ L   +  L  +P  F    ++L  L M G +   L   +  L  LR + L   + 
Sbjct: 589 PKLRLLRWDKYPLRCMPSNFRP--ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646

Query: 175 FGDLPLIGELSLLEILDLSK-SDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233
             ++P +   + LE L LS  S + E+P S   L+ L  LD++ C++LE++P G+     
Sbjct: 647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----- 701

Query: 234 KLEELY 239
            L+ LY
Sbjct: 702 NLKSLY 707

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 15/142 (10%)

Query: 113 ECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRGFS--LPSSLSFLINLRTLSL 169
           + P LQ L L  N     +PD F  G K L+ LD+   + FS  +P  L  L  L  L L
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKL 506

Query: 170 HDCRRFGDLPLIGELSL---LEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLE-LI 224
            + +  G++P   ELS    L  LDLS + +S +IP SF  +  L  LDL+  + L   I
Sbjct: 507 SENKLSGEIP--DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS-QNQLSGEI 563

Query: 225 PRGVLSRLRKLEELYMSRSFHH 246
           P+  L  +  L ++ +S +  H
Sbjct: 564 PKN-LGNVESLVQVNISHNHLH 584

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.53
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.74
KOG4341	483	consensus F-box protein containing LRR [General fu	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
PLN03150	623	hypothetical protein; Provisional	98.62
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
PLN03150	623	hypothetical protein; Provisional	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.41
KOG4341	483	consensus F-box protein containing LRR [General fu	98.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.25
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.59
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.07
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.93
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.39
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.34
smart00370	26	LRR Leucine-rich repeats, outliers.	90.06
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.06
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.36
smart00370	26	LRR Leucine-rich repeats, outliers.	88.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.16
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.57

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-34  Score=286.67  Aligned_cols=242  Identities=34%  Similarity=0.444  Sum_probs=204.0

Q ss_pred             CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecC---CcCeEEechHHHHHHHHHhc-----c
Q 047708            1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG---KEGYVKMHDVVRYVAQQIAS-----K   72 (397)
Q Consensus         1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~~hd~~~~~~~~~~~-----~   72 (397)
                      ||||+|++++||.+||||||+++....+.+++.|.+|+.+|+++++++..+   ....|+|||++||+|.++++     +
T Consensus       423 PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~  502 (889)
T KOG4658|consen  423 PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE  502 (889)
T ss_pred             CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc
Confidence            999999999999999999999886666779999999999999999999885   44689999999999999999     5


Q ss_pred             cceEEecCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCC--CcccChhhhcCCCcccEEEcCCCC
Q 047708           73 NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENS--LLVIPDRFFQGMKDLKVLDMGGIR  150 (397)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~  150 (397)
                      +...+.++......+....+...|++++.++.+..++....+++|++|.+.+|.  +..++..+|..++.|++||+++|.
T Consensus       503 e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~  582 (889)
T KOG4658|consen  503 ENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS  582 (889)
T ss_pred             cceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence            556666555556678888889999999999999999888888899999999997  788888899999999999999876


Q ss_pred             C-CCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCC-CccchhhhCCCCCCeeecCCCC-CCCCCchh
Q 047708          151 G-FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDV-SEIPISFGRLSHLRLLDLTDCD-DLELIPRG  227 (397)
Q Consensus       151 ~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~  227 (397)
                      - ..+|..++.+.+||||+++++.+...|..++++.+|.+|++..+.. ..+|.....+.+|++|.+.... ..+..-.+
T Consensus       583 ~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~  662 (889)
T KOG4658|consen  583 SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK  662 (889)
T ss_pred             ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHH
Confidence            5 8999999999999999999999987888999999999999998854 4566777779999999998743 11222222


Q ss_pred             hhcCCCCCCEEEeec
Q 047708          228 VLSRLRKLEELYMSR  242 (397)
Q Consensus       228 ~~~~l~~L~~L~l~~  242 (397)
                      .+.++.+|+.+....
T Consensus       663 el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  663 ELENLEHLENLSITI  677 (889)
T ss_pred             hhhcccchhhheeec
Confidence            245566666666543

>PLN03210 Resistant to P

Probab=99.95  E-value=3.6e-26  Score=238.96  Aligned_cols=370  Identities=19%  Similarity=0.260  Sum_probs=240.6

Q ss_pred             HHHHHHHHhhccccccccHHHHHH-------HHHHHHHHHhhcceeeecCCcCeEEechHHHHHHHHHhccc-------c
Q 047708            9 EVLARYGWGLRCLQNVDSVEKARG-------RARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKN-------K   74 (397)
Q Consensus         9 ~~Li~~Wia~g~i~~~~~~~~~~~-------~~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~~~~~~~-------~   74 (397)
                      .+-+.+|||..|.....  +.+..       .++.-++.|++++|++..  .+.+.|||+++++|+.++.++       .
T Consensus       438 ~k~~Fl~ia~ff~~~~~--~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~  513 (1153)
T PLN03210        438 DKAIFRHIACLFNGEKV--NDIKLLLANSDLDVNIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGERE  513 (1153)
T ss_pred             hhhhhheehhhcCCCCH--HHHHHHHHhcCCCchhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcce
Confidence            45567888876643211  11111       112238889999999875  357999999999999998632       1


Q ss_pred             eEEecC---------CccCC---------------C--CCccccccCceEEccCCCcc-------cCCCcC-CC-CCccE
Q 047708           75 FMIKAG---------VELKD---------------W--PSINKFEDLTGISLMFNDIH-------EVPDEL-EC-PKLQA  119 (397)
Q Consensus        75 ~~~~~~---------~~~~~---------------~--~~~~~~~~l~~l~l~~~~~~-------~~~~~~-~~-~~L~~  119 (397)
                      +.+...         .....               +  .....+++|+.|.+..+...       .+|..+ .+ .+|+.
T Consensus       514 ~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~  593 (1153)
T PLN03210        514 FLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRL  593 (1153)
T ss_pred             eEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEE
Confidence            221110         00000               0  01234667777777554321       144444 22 46888


Q ss_pred             EEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCC-CCC
Q 047708          120 LLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKS-DVS  198 (397)
Q Consensus       120 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~  198 (397)
                      |.+.++.+..+|..+  .+.+|+.|++.++.+..+|..+..+++|++|+++++.....+|.++.+++|++|++.+| .+.
T Consensus       594 L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~  671 (1153)
T PLN03210        594 LRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV  671 (1153)
T ss_pred             EEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc
Confidence            888888888888764  56888999999888888888888889999999988876677777888889999999887 566


Q ss_pred             ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC---------ccCccccccc------
Q 047708          199 EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE---------DSSSNAKFIE------  263 (397)
Q Consensus       199 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------~~~~~~~~~~------  263 (397)
                      .+|..++++++|+.|++++|..++.+|.. + ++++|+.|++++|.....+|...         ......++..      
T Consensus       672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L  749 (1153)
T PLN03210        672 ELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENL  749 (1153)
T ss_pred             ccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccc
Confidence            88888888899999999888888888875 2 67778888887775444333110         0000000000      


Q ss_pred             ------------------------cCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecCcccchhhhH-HHHhh-
Q 047708          264 ------------------------LGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGDLAAGFISAA-IEVFS-  315 (397)
Q Consensus       264 ------------------------l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~l~-  315 (397)
                                              ....++|+.|++++|. ...+|.+++ +++|+.|+++.|......+... +..|. 
T Consensus       750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~  829 (1153)
T PLN03210        750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLES  829 (1153)
T ss_pred             ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCE
Confidence                                    0012345555555554 445565555 6666666666554332211100 00000 


Q ss_pred             ---------hhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCc
Q 047708          316 ---------RKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEM  385 (397)
Q Consensus       316 ---------~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L  385 (397)
                               ..++..+.+++.|++ ++.+..+|.++..+ ++|++|++++|++++.++..  ...+++|+.|++.+|+.|
T Consensus       830 L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l-~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKF-SNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             EECCCCCccccccccccccCEeECCCCCCccChHHHhcC-CCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccc
Confidence                     001112456788888 77888999999888 69999999999999998643  358899999999999999


Q ss_pred             eEee
Q 047708          386 KCLL  389 (397)
Q Consensus       386 ~~i~  389 (397)
                      +.++
T Consensus       907 ~~~~  910 (1153)
T PLN03210        907 TEAS  910 (1153)
T ss_pred             cccc
Confidence            8664

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=2.2e-23  Score=217.42  Aligned_cols=157  Identities=29%  Similarity=0.400  Sum_probs=118.8

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEE
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLS  168 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~  168 (397)
                      .+++|++|++++|.+.+..+...+++|++|++++|.+. .+|.. ++.+++|++|++++|.+ ..+|..++++++|++|+
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence            67888888888888876333346778888888888854 44444 57888888888888877 56777888888888888


Q ss_pred             ccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          169 LHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       169 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      +++|.+.+..| .++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee
Confidence            88888766555 7788888888888888776 67778888888888888886555566665 777888888888877776


Q ss_pred             ccc
Q 047708          247 WQF  249 (397)
Q Consensus       247 ~~~  249 (397)
                      +.+
T Consensus       274 ~~~  276 (968)
T PLN00113        274 GPI  276 (968)
T ss_pred             ccC
Confidence            643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=2.1e-23  Score=217.64  Aligned_cols=158  Identities=23%  Similarity=0.351  Sum_probs=135.2

Q ss_pred             ccccccCceEEccCCCccc-CCCcC--CCCCccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCC-CCCChhhcCccc
Q 047708           89 INKFEDLTGISLMFNDIHE-VPDEL--ECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLIN  163 (397)
Q Consensus        89 ~~~~~~l~~l~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~  163 (397)
                      ...+++|+.|++++|.+.. +|...  .+++|+.|++++|.+. .+|.   +.+++|++|++++|.+ ..+|..++.+++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCC
Confidence            4578899999999999874 77654  7899999999999854 4553   5789999999999998 477889999999


Q ss_pred             CcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEee
Q 047708          164 LRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS  241 (397)
Q Consensus       164 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  241 (397)
                      |++|++++|.+.+..| .++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECc
Confidence            9999999999876666 8899999999999999877 78999999999999999997666677876 8999999999999


Q ss_pred             ccccccccc
Q 047708          242 RSFHHWQFE  250 (397)
Q Consensus       242 ~~~~~~~~~  250 (397)
                      +|.+.+.+|
T Consensus       245 ~n~l~~~~p  253 (968)
T PLN00113        245 YNNLTGPIP  253 (968)
T ss_pred             CceeccccC
Confidence            999887544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=1.8e-24  Score=198.50  Aligned_cols=281  Identities=22%  Similarity=0.276  Sum_probs=190.3

Q ss_pred             CCccccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCc
Q 047708           87 PSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLR  165 (397)
Q Consensus        87 ~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~  165 (397)
                      +.+..++.|+.|++++|++..+|... ..+++-.|++++|.+..+|..+|-++.-|-+|||++|.++.+|+.+..+.+|+
T Consensus        97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq  176 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ  176 (1255)
T ss_pred             chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence            34456778888888888888888777 67778888888888888888888888888888888888888888888888888


Q ss_pred             EEEccCccCcCC-CccccCCCCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708          166 TLSLHDCRRFGD-LPLIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR  242 (397)
Q Consensus       166 ~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  242 (397)
                      +|.+++|.+... +..+..+++|+.|.+++++-+  .+|..+..+.+|+.++++. +.+..+|.. +-++++|+.|++++
T Consensus       177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH-HhhhhhhheeccCc
Confidence            888888876322 224555666677777776443  6677777777777777776 666667765 66777777777777


Q ss_pred             ccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708          243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR  321 (397)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~  321 (397)
                      |.++.            .-...+.-.+|++|+++.|++..+|+.+. ++.|+.|.+..|...-.-++   +.+++     
T Consensus       255 N~ite------------L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP---SGIGK-----  314 (1255)
T KOG0444|consen  255 NKITE------------LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP---SGIGK-----  314 (1255)
T ss_pred             Cceee------------eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc---cchhh-----
Confidence            77653            12223334566677777777777776666 67777766665554322222   23333     


Q ss_pred             cccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecCCc
Q 047708          322 CSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLE  393 (397)
Q Consensus       322 ~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~~~  393 (397)
                      +..|+.+.. ++.+.-+|.++... ..|+.|.|. |+.|-.+|..+  .-+|.|+.|++..+|+|-.=|.+..
T Consensus       315 L~~Levf~aanN~LElVPEglcRC-~kL~kL~L~-~NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  315 LIQLEVFHAANNKLELVPEGLCRC-VKLQKLKLD-HNRLITLPEAI--HLLPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             hhhhHHHHhhccccccCchhhhhh-HHHHHhccc-ccceeechhhh--hhcCCcceeeccCCcCccCCCCcch
Confidence            344555555 66666677777766 377777776 46666666433  2567777777777777766555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=8e-24  Score=194.27  Aligned_cols=276  Identities=21%  Similarity=0.287  Sum_probs=229.1

Q ss_pred             CccccccCceEEccCCCccc--CCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc-Cccc
Q 047708           88 SINKFEDLTGISLMFNDIHE--VPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS-FLIN  163 (397)
Q Consensus        88 ~~~~~~~l~~l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~  163 (397)
                      ....++.||.+.+..|++..  +|..+ .+..|+.|+++.|.+...|..+ ...+++-+|+|++|+++.+|..+. +++.
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTD  151 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHh
Confidence            34567888999999998764  88776 8999999999999999999874 888999999999999999998654 6999


Q ss_pred             CcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCC-CCCCchhhhcCCCCCCEEEee
Q 047708          164 LRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDD-LELIPRGVLSRLRKLEELYMS  241 (397)
Q Consensus       164 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~  241 (397)
                      |-+|++++|.+...||.+.++.+|++|++++|.+.... ..+..+++|++|.+++.+. +..+|.+ +..+.+|+.++++
T Consensus       152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLS  230 (1255)
T ss_pred             HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccc
Confidence            99999999999889999999999999999999766221 3455788899999987332 3468887 8899999999999


Q ss_pred             cccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccc
Q 047708          242 RSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK  320 (397)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  320 (397)
                      .|.+.            .+++.+.++++|+.|++++|.++.+....+ ..+|++|+++.|....  ++   +.+.+    
T Consensus       231 ~N~Lp------------~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~--LP---~avcK----  289 (1255)
T KOG0444|consen  231 ENNLP------------IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV--LP---DAVCK----  289 (1255)
T ss_pred             ccCCC------------cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc--ch---HHHhh----
Confidence            99886            467888999999999999999999988888 9999999999887652  22   45555    


Q ss_pred             ccccccceec-cccc--ccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecCC
Q 047708          321 RCSRAMGLSQ-DMRI--SGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSL  392 (397)
Q Consensus       321 ~~~~L~~L~l-~~~~--~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~~  392 (397)
                       +++|++|.. ++.+  ..+|++|+.+. +|+.+..++ +.|+-+|..+  ..+++|+.|.+.. ..|-.+|++.
T Consensus       290 -L~kL~kLy~n~NkL~FeGiPSGIGKL~-~Levf~aan-N~LElVPEgl--cRC~kL~kL~L~~-NrLiTLPeaI  358 (1255)
T KOG0444|consen  290 -LTKLTKLYANNNKLTFEGIPSGIGKLI-QLEVFHAAN-NKLELVPEGL--CRCVKLQKLKLDH-NRLITLPEAI  358 (1255)
T ss_pred             -hHHHHHHHhccCcccccCCccchhhhh-hhHHHHhhc-cccccCchhh--hhhHHHHHhcccc-cceeechhhh
Confidence             777999999 5555  47999999995 999999997 8888877533  4789999999965 4778888764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=6.4e-22  Score=180.36  Aligned_cols=289  Identities=21%  Similarity=0.218  Sum_probs=158.3

Q ss_pred             cccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEE
Q 047708           90 NKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTL  167 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L  167 (397)
                      .++++|+.+++..|.++.+|... -..+|+.|++.+|.+..+...-+.-++.||+|||+.|.+..+|. ++..-.++++|
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L  178 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL  178 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence            45666777777777777777666 34457777777777666666556667777777777777766654 34444677777


Q ss_pred             EccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708          168 SLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       168 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  245 (397)
                      ++++|.++..-. .+..+.+|.+|.+++|.++.+|. .|.++++|+.|++.. +.++.+..-.|..+++|+.|.+..|.+
T Consensus       179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCc
Confidence            777777755443 66677777777777777777765 444577777777776 444443222245555555555555554


Q ss_pred             cccccCC-------------CccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhH
Q 047708          246 HWQFEGE-------------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAA  310 (397)
Q Consensus       246 ~~~~~~~-------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~  310 (397)
                      ...-...             .+....-.-..+-++++|+.|+++.|.+..+.. ... +++|+.|+++.|......    
T Consensus       258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~----  333 (873)
T KOG4194|consen  258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD----  333 (873)
T ss_pred             ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC----
Confidence            4311000             000000111223345555555555555433321 233 555555555554432110    


Q ss_pred             HHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhc--cccCCCCCccEEEEeccCCceE
Q 047708          311 IEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSD--LANDGFNELMFLGIFGCNEMKC  387 (397)
Q Consensus       311 ~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~~~~L~~L~i~~c~~L~~  387 (397)
                      .+++..     +..|+.|.+ .++++.+-.+.+...++|++|+|++ +.+.-...+  ....++|+|+.|.+.|+ .|+.
T Consensus       334 ~~sf~~-----L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~  406 (873)
T KOG4194|consen  334 EGSFRV-----LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKS  406 (873)
T ss_pred             hhHHHH-----HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeee
Confidence            012222     444555555 5555555544444446666666665 322211111  12235788888888776 4666


Q ss_pred             eec
Q 047708          388 LLN  390 (397)
Q Consensus       388 i~~  390 (397)
                      |+.
T Consensus       407 I~k  409 (873)
T KOG4194|consen  407 IPK  409 (873)
T ss_pred             cch
Confidence            664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=3.8e-22  Score=181.82  Aligned_cols=272  Identities=20%  Similarity=0.222  Sum_probs=178.1

Q ss_pred             ccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEc
Q 047708           93 EDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSL  169 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l  169 (397)
                      +.+++|+++.|.++.++...  .-.+++.|++++|+++++....|..+.+|.+|.|+.|.+..+|. .+.++++|+.|++
T Consensus       149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence            34444444444444433222  23445555555555555555555555555555555555555544 2333555555555


Q ss_pred             cCccCcCCC-ccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          170 HDCRRFGDL-PLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       170 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      ..|.+...- -.+..|++|+.|.+..|++..+.+ .|..+.++++|++.. +.+..+..+.+-.++.|+.|++++|.+..
T Consensus       229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~r  307 (873)
T KOG4194|consen  229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQR  307 (873)
T ss_pred             cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhhe
Confidence            555542221 145555555666666665555543 455677777777777 56666666667778888888888887765


Q ss_pred             cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccc
Q 047708          248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRA  325 (397)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L  325 (397)
                                 ..++...-+++|+.|+++.|++..++.. +. +..|+.|+++.|.         ++++.+..|...++|
T Consensus       308 -----------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns---------i~~l~e~af~~lssL  367 (873)
T KOG4194|consen  308 -----------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS---------IDHLAEGAFVGLSSL  367 (873)
T ss_pred             -----------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc---------hHHHHhhHHHHhhhh
Confidence                       3456677789999999999999998877 45 8999999999877         456666666678999


Q ss_pred             cceec-cccccc-c---hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708          326 MGLSQ-DMRISG-V---HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL  389 (397)
Q Consensus       326 ~~L~l-~~~~~~-l---p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~  389 (397)
                      ++|++ .+.+.. +   ...+..+ ++|+.|.+.+ ++++.++... ..+|++|++|++.+++ +.+|.
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl-~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~Na-iaSIq  432 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGL-PSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNA-IASIQ  432 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccc-hhhhheeecC-ceeeecchhh-hccCcccceecCCCCc-ceeec
Confidence            99999 666541 2   2223334 7999999998 8999998544 4699999999998875 45543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=2.2e-22  Score=175.70  Aligned_cols=259  Identities=24%  Similarity=0.314  Sum_probs=219.4

Q ss_pred             CceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708           95 LTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  173 (397)
                      +..+.+++|++..+.+.. ++..|.+|.+.+|....+|+++ +.+..++.++++.+++..+|..++.+.+|+.++.+.+.
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE  125 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence            567788888888765555 8889999999999988888875 88888999999999999999999999999999999999


Q ss_pred             CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708          174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE  253 (397)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  253 (397)
                      +...+++++.+..|+.++..+|++..+|.++.++.+|..+++.+ +.++.+|+..+. |+.|++++...|.+.       
T Consensus       126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~-------  196 (565)
T KOG0472|consen  126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE-------  196 (565)
T ss_pred             eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh-------
Confidence            98888899999999999999999999999999999999999998 777888887555 999999998877765       


Q ss_pred             ccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-c
Q 047708          254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-D  331 (397)
Q Consensus       254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~  331 (397)
                           .++++++.+.+|.-|++..|.+..+| .+. |..|..|+++.+.         ++.++.......+++..|++ .
T Consensus       197 -----tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~---------i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  197 -----TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ---------IEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             -----cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH---------HHhhHHHHhcccccceeeeccc
Confidence                 46889999999999999999999999 555 9999999888665         33444433345788899999 8


Q ss_pred             cccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          332 MRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       332 ~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      +.+.++|+.+.-+ ++|++||+++ +.+..++.  ..|++ .|+.|-+.|+|
T Consensus       262 Nklke~Pde~clL-rsL~rLDlSN-N~is~Lp~--sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  262 NKLKEVPDEICLL-RSLERLDLSN-NDISSLPY--SLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cccccCchHHHHh-hhhhhhcccC-CccccCCc--ccccc-eeeehhhcCCc
Confidence            9999999999888 7999999997 88888864  44588 89999999987

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.79  E-value=4e-21  Score=167.87  Aligned_cols=279  Identities=21%  Similarity=0.281  Sum_probs=205.5

Q ss_pred             ccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708           89 INKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS  168 (397)
Q Consensus        89 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  168 (397)
                      .+.++++..|++..|++..+|++-.|+.|..|.++.|.+..+|....+.+.++.+||+..|++.++|+.++.+++|.+||
T Consensus       202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD  281 (565)
T ss_pred             hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence            35666777778888888888876688888888888888888888877789999999999999999999999999999999


Q ss_pred             ccCccCcCCCccccCCCCCCEEEccCCCCCccc------------------------------------------hhhhC
Q 047708          169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP------------------------------------------ISFGR  206 (397)
Q Consensus       169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp------------------------------------------~~i~~  206 (397)
                      +++|.+++.++.++++ +|+.|.+.+|.+..+-                                          .++..
T Consensus       282 lSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~  360 (565)
T KOG0472|consen  282 LSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA  360 (565)
T ss_pred             ccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence            9999998888889998 8888888877653221                                          11223


Q ss_pred             CCCCCeeecCCCCCCCCCchhhhcCCC--CCCEEEeecccccccccCC-------------CccCccccccccCCCCCCC
Q 047708          207 LSHLRLLDLTDCDDLELIPRGVLSRLR--KLEELYMSRSFHHWQFEGE-------------EDSSSNAKFIELGSLSRLT  271 (397)
Q Consensus       207 l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~l~~l~~L~  271 (397)
                      +.+.+.|++++ .+++.+|.++|..-.  -...+++++|.+.. +|..             .+....-++..++.+++|.
T Consensus       361 ~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt  438 (565)
T KOG0472|consen  361 IITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT  438 (565)
T ss_pred             hhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence            34566777777 777888877554322  35667777776542 3332             1222234556788899999


Q ss_pred             EEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHH-HHHHHhhc
Q 047708          272 SLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSW-IKNLLLRS  348 (397)
Q Consensus       272 ~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~-~~~~~~~L  348 (397)
                      -|++++|-..++|...+ +..|+.|+++.+..-         .+++ +.+.+-.++.+-. ++.++.+|.. +..+ ++|
T Consensus       439 ~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr---------~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~nm-~nL  507 (565)
T KOG0472|consen  439 FLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR---------MLPE-CLYELQTLETLLASNNQIGSVDPSGLKNM-RNL  507 (565)
T ss_pred             eeecccchhhhcchhhhhhhhhheecccccccc---------cchH-HHhhHHHHHHHHhccccccccChHHhhhh-hhc
Confidence            99999999999999988 888999999988432         1111 0000222233333 6778888765 7777 799


Q ss_pred             cceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708          349 EILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE  384 (397)
Q Consensus       349 ~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~  384 (397)
                      ..|++.+ +.++.+|..+  |++.+|++|+++|+|-
T Consensus       508 ~tLDL~n-Ndlq~IPp~L--gnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  508 TTLDLQN-NDLQQIPPIL--GNMTNLRHLELDGNPF  540 (565)
T ss_pred             ceeccCC-CchhhCChhh--ccccceeEEEecCCcc
Confidence            9999997 8899987544  6999999999999974

>PLN03210 Resistant to P

Probab=99.78  E-value=6.5e-18  Score=177.29  Aligned_cols=277  Identities=19%  Similarity=0.242  Sum_probs=140.2

Q ss_pred             ccccCceEEccCCCcccCCCcC-CCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEE
Q 047708           91 KFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTL  167 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L  167 (397)
                      ...+|+.|++.++.+..++... .+++|+.|+++++. +..+|.  +..+++|++|++++|.. ..+|..++.+.+|++|
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            3345555555555554444433 45555555555544 444443  34455555555555432 4455555555555555


Q ss_pred             EccCccCcCCCccccCCCCCCEEEccCCC-CCccchhhhCCCCCCeeecCCCCCCCCCchhh------------------
Q 047708          168 SLHDCRRFGDLPLIGELSLLEILDLSKSD-VSEIPISFGRLSHLRLLDLTDCDDLELIPRGV------------------  228 (397)
Q Consensus       168 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~------------------  228 (397)
                      ++++|.....+|...++++|+.|++++|. +..+|..   ..+|+.|++++ +.++.+|...                  
T Consensus       687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~-n~i~~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDE-TAIEEFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCC-Cccccccccccccccccccccccchhhc
Confidence            55555443333322244444444444442 1122211   11223333332 1122222210                  


Q ss_pred             -----------hcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCCcccCCCccEEE
Q 047708          229 -----------LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMSFQNLTSFS  296 (397)
Q Consensus       229 -----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~  296 (397)
                                 ....++|+.|++++|....           .++..++++++|+.|++++|. .+.+|..+.+++|+.|+
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-----------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~  831 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLV-----------ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD  831 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCcc-----------ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEE
Confidence                       0012344555555554433           334556666777777776654 55666555566666666


Q ss_pred             EEecCcccchhh------------hHHHHhhhhcccccccccceec--ccccccchHHHHHHHhhccceecccCCChhhh
Q 047708          297 ITIGDLAAGFIS------------AAIEVFSRKFKKRCSRAMGLSQ--DMRISGVHSWIKNLLLRSEILALVDVNDLENI  362 (397)
Q Consensus       297 l~~~~~~~~~~~------------~~~~~l~~~~~~~~~~L~~L~l--~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l  362 (397)
                      +++|........            ..+..++.. ....++|+.|++  +..+..+|..+..+ ++|+.+++++|..|+.+
T Consensus       832 Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s-i~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        832 LSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW-IEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CCCCCccccccccccccCEeECCCCCCccChHH-HhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeecCCCcccccc
Confidence            666544321110            001111111 112778899988  57788888877777 69999999999999865


Q ss_pred             hhcc-----------ccCCCCCccEEEEeccCCce
Q 047708          363 VSDL-----------ANDGFNELMFLGIFGCNEMK  386 (397)
Q Consensus       363 ~~~~-----------~~~~~~~L~~L~i~~c~~L~  386 (397)
                      ....           ....+|....+.+.+|.+|.
T Consensus       910 ~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        910 SWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             cCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            3211           01235555666777777765

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=6.2e-20  Score=142.55  Aligned_cols=169  Identities=28%  Similarity=0.420  Sum_probs=140.8

Q ss_pred             cccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCC
Q 047708          105 IHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGEL  184 (397)
Q Consensus       105 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l  184 (397)
                      +.+++..++++..+.|.+++|.+..+|+.+ ..+++|++|++++|+++++|.++..++.|+.|++.-|.+...+..++.+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence            344566667777777788888877777774 7888899999999988889988999999999998888876666688999


Q ss_pred             CCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccc
Q 047708          185 SLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI  262 (397)
Q Consensus       185 ~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  262 (397)
                      +-|+.||+..|++.  .+|..+..++.|+-|++++ +.+.-+|+. ++++++|+.|.+..|.+.            ..+.
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll------------~lpk  167 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL------------SLPK  167 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh------------hCcH
Confidence            99999999888776  7888888888999999988 788888888 899999999999888876            4678


Q ss_pred             ccCCCCCCCEEEEeccCCCCCCCccc
Q 047708          263 ELGSLSRLTSLHIHIPNGKIMSSDMS  288 (397)
Q Consensus       263 ~l~~l~~L~~L~l~~~~~~~~~~~~~  288 (397)
                      +++.++.|++|.|.+|+...+|..++
T Consensus       168 eig~lt~lrelhiqgnrl~vlppel~  193 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTVLPPELA  193 (264)
T ss_pred             HHHHHHHHHHHhcccceeeecChhhh
Confidence            88899999999999999888886655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=9.3e-17  Score=158.59  Aligned_cols=245  Identities=16%  Similarity=0.179  Sum_probs=167.9

Q ss_pred             cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708           94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  173 (397)
                      +...|.+.++.++.+|..+ .+.|+.|++++|.+..+|..++   .+|++|++++|.+..+|..+.  .+|+.|++++|.
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            4567888887777777654 3568888888888778876543   478888888888877776553  468888888888


Q ss_pred             CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708          174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE  253 (397)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  253 (397)
                      +...+..+.  .+|+.|++++|.++.+|..+.  .+|++|++++ +.++.+|.. +.  ++|+.|++++|.+.. +    
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-L----  319 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTA-L----  319 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCcccc-C----
Confidence            765544443  478888888888888877554  4788888888 466667654 22  467788888877763 1    


Q ss_pred             ccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cc
Q 047708          254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DM  332 (397)
Q Consensus       254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~  332 (397)
                             +..+  .++|+.|++++|.+..+|..+ +++|+.|+++.|....         ++.   ..++.|+.|++ ++
T Consensus       320 -------P~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~---------LP~---~lp~~L~~LdLs~N  377 (754)
T PRK15370        320 -------PETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITV---------LPE---TLPPTITTLDVSRN  377 (754)
T ss_pred             -------Cccc--cccceeccccCCccccCChhh-cCcccEEECCCCCCCc---------CCh---hhcCCcCEEECCCC
Confidence                   1222  257888888888877777544 4678888888775431         111   11357888888 77


Q ss_pred             ccccchHHHHHHHhhccceecccCCChhhhhhcc--ccCCCCCccEEEEeccC
Q 047708          333 RISGVHSWIKNLLLRSEILALVDVNDLENIVSDL--ANDGFNELMFLGIFGCN  383 (397)
Q Consensus       333 ~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~~~~L~~L~i~~c~  383 (397)
                      .+..+|..+.   .+|+.|++++ +.+..+|..+  ....+|++..|.+.++|
T Consensus       378 ~Lt~LP~~l~---~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        378 ALTNLPENLP---AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             cCCCCCHhHH---HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            7777887654   3688888887 5666665322  12345778888888876

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.69  E-value=1.7e-18  Score=165.98  Aligned_cols=243  Identities=20%  Similarity=0.260  Sum_probs=157.0

Q ss_pred             CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccC
Q 047708          115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSK  194 (397)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  194 (397)
                      .+|+.++++.+.+..+| ++...+.+|..++..+|.+..+|..+..+++|++|.+..|.+...++...++++|++|++..
T Consensus       241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             ccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            44555555555555555 44455555555555555555555555555555555555555544444555555555555555


Q ss_pred             CCCCccchhhhCCC--CCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCE
Q 047708          195 SDVSEIPISFGRLS--HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTS  272 (397)
Q Consensus       195 ~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  272 (397)
                      |.+..+|..+-...  .|+.|..+. +.+...|...-..++.|+.|++.+|.++.           ..++.+.+..+|+.
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-----------~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTD-----------SCFPVLVNFKHLKV  387 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccc-----------cchhhhccccceee
Confidence            55555554222111  133343333 33333332111234567777777777766           66788899999999


Q ss_pred             EEEeccCCCCCCCcc-c-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhcc
Q 047708          273 LHIHIPNGKIMSSDM-S-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSE  349 (397)
Q Consensus       273 L~l~~~~~~~~~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~  349 (397)
                      |++++|++..+|+.. . +..|+.|++++|....-     ...+..     +..|+.|.. ++.+..+| .+..+ +.|+
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-----p~tva~-----~~~L~tL~ahsN~l~~fP-e~~~l-~qL~  455 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-----PDTVAN-----LGRLHTLRAHSNQLLSFP-ELAQL-PQLK  455 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhhhh-----hHHHHh-----hhhhHHHhhcCCceeech-hhhhc-Ccce
Confidence            999999999999884 4 99999999998875422     123444     778899988 88889999 66666 6999


Q ss_pred             ceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708          350 ILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE  384 (397)
Q Consensus       350 ~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~  384 (397)
                      .+|++ |++|+.......... |+||+|++.|++.
T Consensus       456 ~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  456 VLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             EEecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            99998 699988753332222 7899999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.69  E-value=7.6e-16  Score=151.44  Aligned_cols=148  Identities=21%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL  158 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  158 (397)
                      ....+..+|.. -.++++.|++..|+++.+|..  .++|+.|++++|.+..+|.    ..++|+.|++++|.+..+|.. 
T Consensus       209 s~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~l-  280 (788)
T PRK15387        209 GESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPAL-  280 (788)
T ss_pred             CCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----cccccceeeccCCchhhhhhc-
Confidence            34455555553 235788888888888887763  5788889998888777764    246788888888877666652 


Q ss_pred             cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEE
Q 047708          159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL  238 (397)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  238 (397)
                        ..+|+.|++++|.+...+.   ..++|+.|++++|.++.+|...   .+|+.|.+++ +.++.+|.  +  ..+|+.|
T Consensus       281 --p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~L  347 (788)
T PRK15387        281 --PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPT--L--PSGLQEL  347 (788)
T ss_pred             --hhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---cccccccccc-Cccccccc--c--ccccceE
Confidence              2457777888887755443   2367888888888777776532   3466666666 45555553  1  1467777


Q ss_pred             Eeecccccc
Q 047708          239 YMSRSFHHW  247 (397)
Q Consensus       239 ~l~~~~~~~  247 (397)
                      ++++|.+..
T Consensus       348 dLS~N~Ls~  356 (788)
T PRK15387        348 SVSDNQLAS  356 (788)
T ss_pred             ecCCCccCC
Confidence            777777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.3e-18  Score=135.30  Aligned_cols=162  Identities=25%  Similarity=0.417  Sum_probs=142.8

Q ss_pred             cCCCCCccccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCc
Q 047708           83 LKDWPSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFL  161 (397)
Q Consensus        83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l  161 (397)
                      +.+++....++++++|.+++|.++.+|+.+ .+.+|+.|++.+|.+.++|.++ +.++.|+.|+++-|.+..+|..+|.+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCC
Confidence            445566667888999999999999988877 8999999999999999999885 89999999999999999999999999


Q ss_pred             ccCcEEEccCccCcCC-Cc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708          162 INLRTLSLHDCRRFGD-LP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY  239 (397)
Q Consensus       162 ~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  239 (397)
                      +-|+.|++.+|++.+. .| .+-.+..|+.|+++.|.+..+|.+++++++|+.|.+.+ +.+-.+|.. ++.++.|++|.
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelh  179 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELH  179 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHh
Confidence            9999999999988643 34 77788899999999999999999999999999999999 666678887 89999999999


Q ss_pred             eecccccc
Q 047708          240 MSRSFHHW  247 (397)
Q Consensus       240 l~~~~~~~  247 (397)
                      +.+|.+..
T Consensus       180 iqgnrl~v  187 (264)
T KOG0617|consen  180 IQGNRLTV  187 (264)
T ss_pred             cccceeee
Confidence            99999873

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=2.8e-15  Score=148.19  Aligned_cols=236  Identities=15%  Similarity=0.183  Sum_probs=178.8

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS  159 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  159 (397)
                      +..+..+|.. -.++++.|++++|.+..+|... .++|+.|++++|.+..+|..+.   .+|+.|++++|.+..+|..+.
T Consensus       187 ~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        187 ILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP  261 (754)
T ss_pred             CCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh
Confidence            3445555543 2357999999999999988755 3689999999999888887543   479999999999998988765


Q ss_pred             CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708          160 FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY  239 (397)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  239 (397)
                        .+|++|++++|.+...+..+.  .+|+.|++++|.++.+|..+.  .+|++|++++ +.+..+|.. +  .++|+.|+
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~  331 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLE  331 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceecc
Confidence              589999999998876544443  589999999999999887654  4789999998 666777764 2  36899999


Q ss_pred             eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcc
Q 047708          240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFK  319 (397)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~  319 (397)
                      +.+|.++. +           +..+  .++|+.|++++|++..+|..+ .++|+.|+++.|.... .++    .+     
T Consensus       332 Ls~N~Lt~-L-----------P~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~-LP~----~l-----  386 (754)
T PRK15370        332 AGENALTS-L-----------PASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTN-LPE----NL-----  386 (754)
T ss_pred             ccCCcccc-C-----------Chhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCC-CCH----hH-----
Confidence            99998764 2           2233  368999999999988887644 5789999999886442 111    12     


Q ss_pred             cccccccceec-ccccccchHHHHHHH---hhccceecccCC
Q 047708          320 KRCSRAMGLSQ-DMRISGVHSWIKNLL---LRSEILALVDVN  357 (397)
Q Consensus       320 ~~~~~L~~L~l-~~~~~~lp~~~~~~~---~~L~~L~l~~c~  357 (397)
                        ...|+.|++ ++.+..+|..+..+.   +++..|++.+.+
T Consensus       387 --~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        387 --PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             --HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence              235888888 788888887776653   467888888744

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=4e-14  Score=139.39  Aligned_cols=225  Identities=20%  Similarity=0.129  Sum_probs=173.3

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS  159 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  159 (397)
                      .+.+..+|.  ..++|+.|++++|.++.+|..  .++|+.|++++|.+..+|.    -..+|+.|++++|.+..+|..  
T Consensus       231 ~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~--  300 (788)
T PRK15387        231 DNNLTSLPA--LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL--  300 (788)
T ss_pred             CCcCCCCCC--CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhh----chhhcCEEECcCCcccccccc--
Confidence            455666664  368899999999999998764  4789999999999877764    236788999999999888763  


Q ss_pred             CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708          160 FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY  239 (397)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  239 (397)
                       +++|++|++++|.+...++.   ..+|+.|++++|.++.+|..   ..+|++|++++ +.++.+|..    .++|+.|+
T Consensus       301 -p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~l----p~~L~~L~  368 (788)
T PRK15387        301 -PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSD-NQLASLPTL----PSELYKLW  368 (788)
T ss_pred             -ccccceeECCCCccccCCCC---cccccccccccCcccccccc---ccccceEecCC-CccCCCCCC----Ccccceeh
Confidence             47899999999988765432   23578899999999988852   25899999999 777778762    35788899


Q ss_pred             eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcc
Q 047708          240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFK  319 (397)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~  319 (397)
                      +++|.+.. +|           .   ...+|+.|++++|.+..+|..  .++|+.|+++.|....         ++.   
T Consensus       369 Ls~N~L~~-LP-----------~---l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Lss---------IP~---  419 (788)
T PRK15387        369 AYNNRLTS-LP-----------A---LPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS---------LPM---  419 (788)
T ss_pred             hhcccccc-Cc-----------c---cccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCC---------CCc---
Confidence            99888764 22           1   135799999999998877743  4689999999886432         111   


Q ss_pred             cccccccceec-ccccccchHHHHHHHhhccceecccCC
Q 047708          320 KRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN  357 (397)
Q Consensus       320 ~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~  357 (397)
                       .+.+|+.|++ ++.++.+|..+..+ ++|+.|+|++++
T Consensus       420 -l~~~L~~L~Ls~NqLt~LP~sl~~L-~~L~~LdLs~N~  456 (788)
T PRK15387        420 -LPSGLLSLSVYRNQLTRLPESLIHL-SSETTVNLEGNP  456 (788)
T ss_pred             -chhhhhhhhhccCcccccChHHhhc-cCCCeEECCCCC
Confidence             1346788888 88899999998888 699999999854

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.53  E-value=1.5e-16  Score=152.93  Aligned_cols=263  Identities=19%  Similarity=0.165  Sum_probs=179.0

Q ss_pred             ccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708           91 KFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL  169 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  169 (397)
                      .-.+++.++++.+++..+|+.+ .+.+|+.+....|.+..+|..+ ..+.+|++|++..|.+..+|...+++++|++|++
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence            4567899999999999999555 8999999999999998888875 6788999999999999999998999999999999


Q ss_pred             cCccCcCCCc-cccCCCC-CCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          170 HDCRRFGDLP-LIGELSL-LEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       170 ~~~~~~~~~~-~~~~l~~-L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ..|.+...++ .+..+.. |..|+.+.+.+..+|. +=..++.|+.|++.+ +.++.-.-..+.++++|+.|++++|.+.
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeecccccc
Confidence            9999877766 4444443 6777777777776663 112345677777777 3333222122677777777777777665


Q ss_pred             ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccc
Q 047708          247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRA  325 (397)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L  325 (397)
                      .           --...+.++..|+.|.+++|.++.+|..+. ++.|+.|..+.|....+      ..+..     .+.|
T Consensus       397 ~-----------fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f------Pe~~~-----l~qL  454 (1081)
T KOG0618|consen  397 S-----------FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF------PELAQ-----LPQL  454 (1081)
T ss_pred             c-----------CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec------hhhhh-----cCcc
Confidence            3           112345667777777777777777777766 77777777666654433      13333     6667


Q ss_pred             cceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708          326 MGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC  382 (397)
Q Consensus       326 ~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c  382 (397)
                      +.+++ ++.++.+-.......++|++|++++...+.     +....|+.++.+...+.
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~~l~~l~~l~~~~i  507 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHKTLKVLKSLSQMDI  507 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCcccc-----cchhhhHHhhhhhheec
Confidence            77777 555553211111111588888888766432     22345555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.44  E-value=6.2e-15  Score=129.25  Aligned_cols=251  Identities=21%  Similarity=0.202  Sum_probs=122.9

Q ss_pred             cCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCC-CCCCCCCh-hhcCcccCcEEEc
Q 047708           94 DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG-IRGFSLPS-SLSFLINLRTLSL  169 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~~-~~~~l~~L~~L~l  169 (397)
                      ....+.|..|.|+.+|+..  .+.+||.|+++.|.+..+.+..|.++++|..|-+.+ |.+..+|. .+++|..|+-|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            4455566666666655544  556666666666665555555566665555554444 55555544 3455566665555


Q ss_pred             cCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCC------------CchhhhcCCCCC
Q 047708          170 HDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLEL------------IPRGVLSRLRKL  235 (397)
Q Consensus       170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~------------~~~~~~~~l~~L  235 (397)
                      ..|.+..... .+..+++|..|.+..|.+..++. .+..+..++++.+..+..+..            .|.. ++...-.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~  226 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCV  226 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceec
Confidence            5555544333 45555666666666655555554 455555555555444221110            0000 0000000


Q ss_pred             CEEEeecccccc-----------cccCC---Cc-cCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEE
Q 047708          236 EELYMSRSFHHW-----------QFEGE---ED-SSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSIT  298 (397)
Q Consensus       236 ~~L~l~~~~~~~-----------~~~~~---~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~  298 (397)
                      .-..+.+.++..           ..+..   .. .....-...++.+++|++|++++|.++.+.+. +. ...++.|.+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence            000000000000           00000   00 00001122356677777777777776555443 44 6777777776


Q ss_pred             ecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHH-HHHHHhhccceeccc
Q 047708          299 IGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSW-IKNLLLRSEILALVD  355 (397)
Q Consensus       299 ~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~-~~~~~~~L~~L~l~~  355 (397)
                      .|.         +..+...+|.....|+.|++ ++.++.+... +..+ .+|.+|.+-.
T Consensus       307 ~N~---------l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~-~~l~~l~l~~  355 (498)
T KOG4237|consen  307 RNK---------LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL-FSLSTLNLLS  355 (498)
T ss_pred             cch---------HHHHHHHhhhccccceeeeecCCeeEEEeccccccc-ceeeeeehcc
Confidence            655         34455555566777777777 6666644322 3333 3666666553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.43  E-value=1.2e-14  Score=127.41  Aligned_cols=117  Identities=21%  Similarity=0.246  Sum_probs=91.9

Q ss_pred             CCccCCCCCc--cccccCceEEccCCCcccCCCc-C-CCCCccEEEccC-CCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708           80 GVELKDWPSI--NKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQE-NSLLVIPDRFFQGMKDLKVLDMGGIRGFSL  154 (397)
Q Consensus        80 ~~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  154 (397)
                      .+.+..+|..  +.+++||+|+|+.|.|+.+.+. + .+..+.+|.+.+ |++.++|...|+++..|+-|.+.-+++..+
T Consensus        76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci  155 (498)
T KOG4237|consen   76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI  155 (498)
T ss_pred             cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence            3445555544  5688999999999999986444 3 788888877766 779999999999999999999999998655


Q ss_pred             -ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCC
Q 047708          155 -PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSD  196 (397)
Q Consensus       155 -~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~  196 (397)
                       ...+..+++|..|.+.+|.+..... .+..+..++++.+..+.
T Consensus       156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence             4578889999999999998865554 66777777777665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.40  E-value=6.4e-13  Score=133.65  Aligned_cols=292  Identities=23%  Similarity=0.208  Sum_probs=173.7

Q ss_pred             CccCCCCCccccccCceEEccCCC--cccCCCc--CCCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCCCCCCCC
Q 047708           81 VELKDWPSINKFEDLTGISLMFND--IHEVPDE--LECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSLP  155 (397)
Q Consensus        81 ~~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  155 (397)
                      +.....+.....+++++|-+..+.  +..++..  ..++.|++|++++|. ...+|..+ +.+-+||+|+++++.+..+|
T Consensus       533 ~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP  611 (889)
T KOG4658|consen  533 NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLP  611 (889)
T ss_pred             cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccc
Confidence            344444555566789999999886  5666663  379999999999998 88899875 99999999999999999999


Q ss_pred             hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC---ccchhhhCCCCCCeeecCCCCC-----------
Q 047708          156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS---EIPISFGRLSHLRLLDLTDCDD-----------  220 (397)
Q Consensus       156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~-----------  220 (397)
                      ..+++|..|.+|++..+.....++ ....|++|++|.+......   ..-..+..+.+|+.+....+..           
T Consensus       612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~  691 (889)
T KOG4658|consen  612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTR  691 (889)
T ss_pred             hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHH
Confidence            999999999999999988777777 4555999999999776532   1223445555555554433211           


Q ss_pred             --------------CCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccC---CCCCCCEEEEeccCCCCC
Q 047708          221 --------------LELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG---SLSRLTSLHIHIPNGKIM  283 (397)
Q Consensus       221 --------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~  283 (397)
                                    ....+.. ++.+.+|+.|.+..|.......        .......   .++++..+.+..+.....
T Consensus       692 L~~~~~~l~~~~~~~~~~~~~-~~~l~~L~~L~i~~~~~~e~~~--------~~~~~~~~~~~f~~l~~~~~~~~~~~r~  762 (889)
T KOG4658|consen  692 LRSLLQSLSIEGCSKRTLISS-LGSLGNLEELSILDCGISEIVI--------EWEESLIVLLCFPNLSKVSILNCHMLRD  762 (889)
T ss_pred             HHHHhHhhhhcccccceeecc-cccccCcceEEEEcCCCchhhc--------ccccccchhhhHHHHHHHHhhccccccc
Confidence                          0111111 4556666677766666542110        0000000   123444444444444444


Q ss_pred             CCccc-CCCccEEEEEecCcccchhhh--HHHHhhhhcccccccccceecccccccchHHHHH--HHhhccceecccCCC
Q 047708          284 SSDMS-FQNLTSFSITIGDLAAGFISA--AIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKN--LLLRSEILALVDVND  358 (397)
Q Consensus       284 ~~~~~-~~~L~~L~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~--~~~~L~~L~l~~c~~  358 (397)
                      +.|.. .++|++|.+..|...++.++.  ....+.. ...+..++..+.+-.....+|.-...  ..+.|+.+.+..|++
T Consensus       763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~-~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~  841 (889)
T KOG4658|consen  763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE-LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK  841 (889)
T ss_pred             cchhhccCcccEEEEecccccccCCCHHHHhhhccc-EEecccccccceeeecCCCCceeEecccCccchhheehhcCcc
Confidence            55555 788888888888877665551  1111110 01122333333211111111100000  002344444444442


Q ss_pred             hhhhhhccccCCCCCccEEEEecc-CCceEeecCC
Q 047708          359 LENIVSDLANDGFNELMFLGIFGC-NEMKCLLNSL  392 (397)
Q Consensus       359 l~~l~~~~~~~~~~~L~~L~i~~c-~~L~~i~~~~  392 (397)
                               .+.+|.+..+.|.+| +.+..+|++.
T Consensus       842 ---------l~~~P~~~~~~i~~~~~~~~~~~~~~  867 (889)
T KOG4658|consen  842 ---------LGKLPLLSTLTIVGCEEKLKEYPDGE  867 (889)
T ss_pred             ---------cccCccccccceeccccceeecCCcc
Confidence                     235677777888886 7777777763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=2.8e-13  Score=123.77  Aligned_cols=271  Identities=18%  Similarity=0.070  Sum_probs=173.4

Q ss_pred             EEccCCCccc--CCCcC-CCCCccEEEccCCCCcc-----cChhhhcCCCcccEEEcCCCCCCC-------CChhhcCcc
Q 047708           98 ISLMFNDIHE--VPDEL-ECPKLQALLLQENSLLV-----IPDRFFQGMKDLKVLDMGGIRGFS-------LPSSLSFLI  162 (397)
Q Consensus        98 l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-------l~~~~~~l~  162 (397)
                      |++..+.+..  ....+ .+..|+.+++.++.+..     ++. .+...+.++.|+++++.+..       ++..+..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4555555542  22222 55679999999998533     222 34677889999999887653       234566788


Q ss_pred             cCcEEEccCccCcCCCc-cccCCC---CCCEEEccCCCCC-----ccchhhhCC-CCCCeeecCCCCCCCC----Cchhh
Q 047708          163 NLRTLSLHDCRRFGDLP-LIGELS---LLEILDLSKSDVS-----EIPISFGRL-SHLRLLDLTDCDDLEL----IPRGV  228 (397)
Q Consensus       163 ~L~~L~l~~~~~~~~~~-~~~~l~---~L~~L~l~~~~~~-----~lp~~i~~l-~~L~~L~l~~~~~~~~----~~~~~  228 (397)
                      +|++|++++|.+....+ .+..+.   +|++|++++|.+.     .+...+..+ ++|+.|++++|.....    ++.. 
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-
Confidence            99999999998864433 444444   4999999999876     233456677 8999999999654422    2222 


Q ss_pred             hcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCC-----CCCccc-CCCccEEEEEecCc
Q 047708          229 LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKI-----MSSDMS-FQNLTSFSITIGDL  302 (397)
Q Consensus       229 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~  302 (397)
                      +..+++|++|++++|.+.+..       ...+...+..+++|+.|++++|.+..     ++..+. +++|++|+++.|..
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~-------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAG-------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHH-------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            567788999999998876411       11233455666899999999987542     333355 78899999998765


Q ss_pred             ccchhhhHHHHhhhhcccccccccceec-ccccc-----cchHHHHHHHhhccceecccCCChhhhhhc---cccCCC-C
Q 047708          303 AAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRIS-----GVHSWIKNLLLRSEILALVDVNDLENIVSD---LANDGF-N  372 (397)
Q Consensus       303 ~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~-----~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~~-~  372 (397)
                      ...    .+..+...+......|+.|++ ++.++     .+...+... ++|+++++++ +.+......   -....+ +
T Consensus       234 ~~~----~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~  307 (319)
T cd00116         234 TDA----GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRG-NKFGEEGAQLLAESLLEPGN  307 (319)
T ss_pred             chH----HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCC-CCCcHHHHHHHHHHHhhcCC
Confidence            432    123333322223578899998 55554     223333333 5789999987 445443211   022345 6


Q ss_pred             CccEEEEeccC
Q 047708          373 ELMFLGIFGCN  383 (397)
Q Consensus       373 ~L~~L~i~~c~  383 (397)
                      .|+.|.|.+.|
T Consensus       308 ~~~~~~~~~~~  318 (319)
T cd00116         308 ELESLWVKDDS  318 (319)
T ss_pred             chhhcccCCCC
Confidence            78888887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=3.7e-13  Score=122.89  Aligned_cols=252  Identities=20%  Similarity=0.124  Sum_probs=168.6

Q ss_pred             ccccCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccC------hhhhcCCCcccEEEcCCCCCC-CCChh
Q 047708           91 KFEDLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIP------DRFFQGMKDLKVLDMGGIRGF-SLPSS  157 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~-~l~~~  157 (397)
                      .+.+++.+.+.++.+..     ++... ..+.++.++++++.+...+      ...+..+++|+.|+++++.+. ..+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            44568899999888743     33333 6677999999888754211      234577899999999999884 44555


Q ss_pred             hcCccc---CcEEEccCccCcCCC-----ccccCC-CCCCEEEccCCCCC-----ccchhhhCCCCCCeeecCCCCCCCC
Q 047708          158 LSFLIN---LRTLSLHDCRRFGDL-----PLIGEL-SLLEILDLSKSDVS-----EIPISFGRLSHLRLLDLTDCDDLEL  223 (397)
Q Consensus       158 ~~~l~~---L~~L~l~~~~~~~~~-----~~~~~l-~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~  223 (397)
                      +..+.+   |++|++++|.+....     ..+..+ ++|+.|++++|.++     .++..+..+.+|++|++++|.....
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            555555   999999999875321     245566 89999999999887     3455677888999999999544322


Q ss_pred             ----CchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc------CCCc
Q 047708          224 ----IPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS------FQNL  292 (397)
Q Consensus       224 ----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~------~~~L  292 (397)
                          ++.. +...++|++|++++|.+...       ....+...+..+++|++|++++|..... ...+.      .+.|
T Consensus       181 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L  252 (319)
T cd00116         181 GIRALAEG-LKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL  252 (319)
T ss_pred             HHHHHHHH-HHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence                2222 45667999999999987631       1113345567789999999999985531 11111      3799


Q ss_pred             cEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchH-----HHHHHHhhccceeccc
Q 047708          293 TSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHS-----WIKNLLLRSEILALVD  355 (397)
Q Consensus       293 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~-----~~~~~~~~L~~L~l~~  355 (397)
                      ++|++.+|.............++.     .++|+.+++ .+.++.-+.     -+....+.|+++++.+
T Consensus       253 ~~L~l~~n~i~~~~~~~l~~~~~~-----~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         253 LTLSLSCNDITDDGAKDLAEVLAE-----KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             eEEEccCCCCCcHHHHHHHHHHhc-----CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            999999887543222212234444     578999999 666664432     1111114777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=2.2e-13  Score=124.92  Aligned_cols=191  Identities=24%  Similarity=0.298  Sum_probs=156.0

Q ss_pred             ccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccC
Q 047708           93 EDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHD  171 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  171 (397)
                      ......+++.|++..+|... .+-.|+.+.+..|.+..+|..+ +++..|.+|+++.|++..+|..++.++ |+.|.+++
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            34456778888888888777 6777888888888888888774 888899999999999988888888876 88889999


Q ss_pred             ccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708          172 CRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG  251 (397)
Q Consensus       172 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  251 (397)
                      |++...++.++-+..|..|+.+.|.+..+|..++.+.+|+.|.+.. +.+..+|.+ +..++ |..||++.|++.     
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~Lp-Li~lDfScNkis-----  224 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSLP-LIRLDFSCNKIS-----  224 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCCc-eeeeecccCcee-----
Confidence            9887777788888889999999999999999999999999999888 777788887 55554 888999988887     


Q ss_pred             CCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-C---CCccEEEEEec
Q 047708          252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-F---QNLTSFSITIG  300 (397)
Q Consensus       252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~---~~L~~L~l~~~  300 (397)
                             .++..+.+|+.|++|.+.+|.+.+-|..+. .   .-.++|++..|
T Consensus       225 -------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 -------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence                   467788899999999999999888888866 2   23456666666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=4.9e-13  Score=122.69  Aligned_cols=192  Identities=20%  Similarity=0.232  Sum_probs=164.8

Q ss_pred             eEEccCCCcccCCCcC---CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708           97 GISLMFNDIHEVPDEL---ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        97 ~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  173 (397)
                      ++.|++-.+..+|...   .+..-...+++.|++..+|.. +..+..|..+.+..|.+..+|..++.+..|.+++++.|.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence            3556666666655433   455556788899999999987 478888999999999999999999999999999999999


Q ss_pred             CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708          174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE  253 (397)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  253 (397)
                      +...+..++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+. +.+..+|.. ++.+.+|+.|.+..|...       
T Consensus       133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~-------  202 (722)
T KOG0532|consen  133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLE-------  202 (722)
T ss_pred             hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhh-------
Confidence            987777888877 8999999999999999999999999999998 667778877 899999999999998886       


Q ss_pred             ccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccc
Q 047708          254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAG  305 (397)
Q Consensus       254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~  305 (397)
                           .++.++..+ .|..|++++|++..+|-.+. +++|+.|-+..|+...-
T Consensus       203 -----~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  203 -----DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             -----hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence                 467888855 59999999999999999999 99999999999987643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=3.6e-11  Score=97.58  Aligned_cols=128  Identities=26%  Similarity=0.277  Sum_probs=39.7

Q ss_pred             CCccccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc-CcccC
Q 047708           87 PSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS-FLINL  164 (397)
Q Consensus        87 ~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L  164 (397)
                      +...+..+++.|++.++.++.+.... .+.+|+.|++++|.+..+..  +..++.|++|++++|.+..+...+. .+++|
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            33334455667777777766665444 45667777777777666654  4666777777777777766654443 46677


Q ss_pred             cEEEccCccCcCCC--ccccCCCCCCEEEccCCCCCccc----hhhhCCCCCCeeecC
Q 047708          165 RTLSLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIP----ISFGRLSHLRLLDLT  216 (397)
Q Consensus       165 ~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp----~~i~~l~~L~~L~l~  216 (397)
                      ++|++++|.+...-  ..+..+++|+.|++.+|.+...+    ..+..+++|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            77777776664332  25556666666666666655333    244555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=6e-11  Score=96.34  Aligned_cols=108  Identities=25%  Similarity=0.277  Sum_probs=27.4

Q ss_pred             cCCCcccEEEcCCCCCCCCChhhc-CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhh-hCCCCCCee
Q 047708          136 QGMKDLKVLDMGGIRGFSLPSSLS-FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISF-GRLSHLRLL  213 (397)
Q Consensus       136 ~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L  213 (397)
                      .+...++.|+|+++.+..+. .++ .+.+|+.|++++|.+. .++.+..+++|++|++++|.++.++..+ ..+++|++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            34445666666666665543 244 3556666666666653 2334555666666666666666554433 245666666


Q ss_pred             ecCCCCCCCCCch-hhhcCCCCCCEEEeeccccc
Q 047708          214 DLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       214 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++++ +.+..+.. ..++.+++|+.|++.+|++.
T Consensus        94 ~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   94 YLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             E-TT-S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ECcC-CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6655 33332221 11445555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=2.4e-10  Score=107.55  Aligned_cols=190  Identities=30%  Similarity=0.345  Sum_probs=123.2

Q ss_pred             eEEccCCCcc-cCCCcCCCCCccEEEccCCCCcccChhhhcCCC-cccEEEcCCCCCCCCChhhcCcccCcEEEccCccC
Q 047708           97 GISLMFNDIH-EVPDELECPKLQALLLQENSLLVIPDRFFQGMK-DLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus        97 ~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  174 (397)
                      .+....+.+. ........+.++.|.+.++.+.++++.. ..+. +|+.|+++++.+..+|..++.+++|+.|+++.|.+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            3555555542 2333335566777777777777766642 4442 77777777777777766677777777777777777


Q ss_pred             cCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCc
Q 047708          175 FGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEED  254 (397)
Q Consensus       175 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  254 (397)
                      ...++..+.++.|+.|+++++.+..+|..+.....|+.|.++++... ..+.. +.++.++..+.+..|.+..       
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~-------  246 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLED-------  246 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeee-------
Confidence            66665655777777777777777777776666666777777773333 33332 5666677777666555532       


Q ss_pred             cCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCc
Q 047708          255 SSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDL  302 (397)
Q Consensus       255 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~  302 (397)
                           ....++.++++++|++++|.+..++. ++ ..+|+.|+++.+..
T Consensus       247 -----~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         247 -----LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             -----ccchhccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence                 23556666777777777777766666 55 77777777766543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=2.4e-10  Score=107.48  Aligned_cols=182  Identities=30%  Similarity=0.360  Sum_probs=131.9

Q ss_pred             CCccccccCceEEccCCCcccCCCcCCCC--CccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccC
Q 047708           87 PSINKFEDLTGISLMFNDIHEVPDELECP--KLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINL  164 (397)
Q Consensus        87 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L  164 (397)
                      ......+.++.+.+..+.+..++......  +|+.|++++|.+..++.. ...+++|+.|+++.|.+..+|...+.+.+|
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L  188 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhh
Confidence            33344566788888888888877777443  788888888887777533 477888888888888888887777688888


Q ss_pred             cEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccc
Q 047708          165 RTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSF  244 (397)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  244 (397)
                      +.|+++++.+...++.+.....|+++.+.+|.....+..+.++.++..+.+.+ +.+..++.. ++.+++++.|++++|.
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~  266 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccc
Confidence            88888888876666666667778888888877667777777788888777666 555554444 6777788888888877


Q ss_pred             ccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC
Q 047708          245 HHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS  284 (397)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  284 (397)
                      +..             +..++.+.+|+.|+++++.....+
T Consensus       267 i~~-------------i~~~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         267 ISS-------------ISSLGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccc-------------cccccccCccCEEeccCccccccc
Confidence            764             233777788888888887744443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=5.7e-11  Score=106.03  Aligned_cols=208  Identities=21%  Similarity=0.186  Sum_probs=138.2

Q ss_pred             cccccCceEEccCCCcccCCC--cC-CCCCccEEEccCCCCcc--cChhhhcCCCcccEEEcCCCCCCCCChh--hcCcc
Q 047708           90 NKFEDLTGISLMFNDIHEVPD--EL-ECPKLQALLLQENSLLV--IPDRFFQGMKDLKVLDMGGIRGFSLPSS--LSFLI  162 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~  162 (397)
                      .++++|+.+.+.++.+...+.  .. .|+.++.|+++.|-+..  ....+...+|+|+.|+++.|.+.....+  -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            367888888988887776553  23 78899999998887332  2234567889999999998887433222  23578


Q ss_pred             cCcEEEccCccCcCCC-c-cccCCCCCCEEEccCCC-CCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708          163 NLRTLSLHDCRRFGDL-P-LIGELSLLEILDLSKSD-VSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY  239 (397)
Q Consensus       163 ~L~~L~l~~~~~~~~~-~-~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  239 (397)
                      +|+.|.++.|.+.+.. . ....+|+|+.|++..|. +..-......++.|+.|++++|+.+..--....+.++.|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            8899999999886432 1 45568888999998884 3222223345667888999886555432112277888888888


Q ss_pred             eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC--ccc-CCCccEEEEEecCc
Q 047708          240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS--DMS-FQNLTSFSITIGDL  302 (397)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~-~~~L~~L~l~~~~~  302 (397)
                      ++.|.+...-.     .+.........+++|++|.+..|++...+.  .+. +++|++|.+..+..
T Consensus       278 ls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  278 LSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             ccccCcchhcC-----CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            88887764211     111222234567889999999888744443  344 77888887766554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=8.1e-11  Score=105.08  Aligned_cols=179  Identities=17%  Similarity=0.141  Sum_probs=103.7

Q ss_pred             CCCCccEEEccCCCCcccCh-hhhcCCCcccEEEcCCCCCC---CCChhhcCcccCcEEEccCccCcCCCc--cccCCCC
Q 047708          113 ECPKLQALLLQENSLLVIPD-RFFQGMKDLKVLDMGGIRGF---SLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSL  186 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~  186 (397)
                      ++++|+...+.++.....+. .....|++++.|||++|-+.   .+..-+..+++|+.|+++.|.+.....  .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            56677777777666544442 33466777777777776552   223334457777777777776643332  2235667


Q ss_pred             CCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccccc
Q 047708          187 LEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL  264 (397)
Q Consensus       187 L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l  264 (397)
                      |+.|.+++|+++  .+-.....+++|..|++..|+.+..-..+ ...+..|++|+|++|.+...          ......
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~----------~~~~~~  267 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF----------DQGYKV  267 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc----------cccccc
Confidence            777777777666  44445556677777777765332221111 33455677777777665431          223445


Q ss_pred             CCCCCCCEEEEeccCCCCC--CCc-----cc-CCCccEEEEEecCc
Q 047708          265 GSLSRLTSLHIHIPNGKIM--SSD-----MS-FQNLTSFSITIGDL  302 (397)
Q Consensus       265 ~~l~~L~~L~l~~~~~~~~--~~~-----~~-~~~L~~L~l~~~~~  302 (397)
                      +.++.|+.|.++.+.+.++  |+.     .. +++|+.|++..|+.
T Consensus       268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            5667777777776663332  222     12 67777777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=1.6e-10  Score=98.55  Aligned_cols=131  Identities=20%  Similarity=0.180  Sum_probs=87.6

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL  192 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  192 (397)
                      .+..|+++++++|.+..+..+. .-.|.++.|++++|.+..+.. +..+++|+.|++++|.+.+...+-.++-+.++|.+
T Consensus       282 TWq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            4566777777777766666653 666777777777777755544 66677777777777776555555556677777777


Q ss_pred             cCCCCCccchhhhCCCCCCeeecCCCCCCCCCch-hhhcCCCCCCEEEeecccccc
Q 047708          193 SKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       193 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      .+|.+..+ .+++++-+|..|++.+ +++..+.. ..+|++|.|+++.+.+|.+.+
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            77766666 3667777777777777 44444322 126777777777777777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=2e-10  Score=97.89  Aligned_cols=194  Identities=19%  Similarity=0.158  Sum_probs=111.0

Q ss_pred             cccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC----CCCChhhcCcccC
Q 047708           90 NKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG----FSLPSSLSFLINL  164 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~l~~~~~~l~~L  164 (397)
                      ..+++++.+.++.++-..+-... .-+.|+++.+.+..+...+.-  -.+..+  -|..+..-    +.+-..+-....|
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l--~pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL--LPETIL--ADPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccc--cchhhh--cCccCCCCCccCCceEEecchHhhh
Confidence            34667888888877655554444 557788887766543332210  111111  11111111    1111223334566


Q ss_pred             cEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccc
Q 047708          165 RTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSF  244 (397)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  244 (397)
                      .++++++|.+.....++.-+|.++.|+++.|.+..+.. +..+.+|++|++++ +.++.+... -.++.++++|.+++|.
T Consensus       287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcCEeeeehhhhh
Confidence            67777777665555566666777777777777666543 66677777777777 444444432 3456667777777766


Q ss_pred             ccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC--ccc-CCCccEEEEEecCcc
Q 047708          245 HHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS--DMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~-~~~L~~L~l~~~~~~  303 (397)
                      +..             ...++++=+|..|++++|++..+-.  .++ +|-|+++.+.+|+..
T Consensus       364 iE~-------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  364 IET-------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             Hhh-------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            532             4556666667777777776544432  255 677777777766643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.74  E-value=8.2e-09  Score=89.99  Aligned_cols=232  Identities=16%  Similarity=0.099  Sum_probs=143.9

Q ss_pred             CCCCccEEEccCCCCccc----ChhhhcCCCcccEEEcCCCCC----CCCChh-------hcCcccCcEEEccCccCcCC
Q 047708          113 ECPKLQALLLQENSLLVI----PDRFFQGMKDLKVLDMGGIRG----FSLPSS-------LSFLINLRTLSLHDCRRFGD  177 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~----~~l~~~-------~~~l~~L~~L~l~~~~~~~~  177 (397)
                      .+..++.+++++|.++.-    ....+.+.+.|+..+++...-    .++|..       +...++|+++++|+|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            455667777777764431    122345566777777776432    233332       33445788888888876433


Q ss_pred             C-c----cccCCCCCCEEEccCCCCCccc--------------hhhhCCCCCCeeecCCCCCCCCCch----hhhcCCCC
Q 047708          178 L-P----LIGELSLLEILDLSKSDVSEIP--------------ISFGRLSHLRLLDLTDCDDLELIPR----GVLSRLRK  234 (397)
Q Consensus       178 ~-~----~~~~l~~L~~L~l~~~~~~~lp--------------~~i~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~  234 (397)
                      - +    -+..+..|++|++.+|.+....              .-+++-++|+++..++ +.+..-+.    ..+...+.
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccc
Confidence            2 1    3566788888888888775221              2345567888888888 55554443    23567788


Q ss_pred             CCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCC-----CCCccc-CCCccEEEEEecCcccchhh
Q 047708          235 LEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKI-----MSSDMS-FQNLTSFSITIGDLAAGFIS  308 (397)
Q Consensus       235 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~~~~~~~  308 (397)
                      |+++.+..|.+...       ........+..+++|+.|++..|.++.     +...+. +++|+.|++++|-....-..
T Consensus       187 leevr~~qN~I~~e-------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPE-------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI  259 (382)
T ss_pred             cceEEEecccccCc-------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence            99999988877531       112345667788999999999887322     233355 78899999998876543222


Q ss_pred             hHHHHhhhhcccccccccceec-ccccc-----cchHHHHHHHhhccceecccCC
Q 047708          309 AAIEVFSRKFKKRCSRAMGLSQ-DMRIS-----GVHSWIKNLLLRSEILALVDVN  357 (397)
Q Consensus       309 ~~~~~l~~~~~~~~~~L~~L~l-~~~~~-----~lp~~~~~~~~~L~~L~l~~c~  357 (397)
                      +....+..    ..++|+.+.+ .+.++     .+-..+... +.|+.|.|++|.
T Consensus       260 a~~~al~~----~~p~L~vl~l~gNeIt~da~~~la~~~~ek-~dL~kLnLngN~  309 (382)
T KOG1909|consen  260 AFVDALKE----SAPSLEVLELAGNEITRDAALALAACMAEK-PDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHhc----cCCCCceeccCcchhHHHHHHHHHHHHhcc-hhhHHhcCCccc
Confidence            23334444    4778888887 55544     122333333 578888888754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.66  E-value=1.4e-09  Score=96.85  Aligned_cols=276  Identities=16%  Similarity=0.092  Sum_probs=168.1

Q ss_pred             cCceEEccCCCcccCC---CcC-CCCCccEEEccCCC-Cccc-ChhhhcCCCcccEEEcCCCCC-CC--CChhhcCcccC
Q 047708           94 DLTGISLMFNDIHEVP---DEL-ECPKLQALLLQENS-LLVI-PDRFFQGMKDLKVLDMGGIRG-FS--LPSSLSFLINL  164 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~---~~~-~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~-~~--l~~~~~~l~~L  164 (397)
                      .++.|++.++.-....   ... ++++++.|.+.+|. +++. -.++-..++.|++|++..|.. ..  +..-...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            4677777777433322   222 78888888888887 3332 233446788899999988654 22  22234458889


Q ss_pred             cEEEccCccCcCCC---ccccCCCCCCEEEccCCC-CC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhc-CCCCCCE
Q 047708          165 RTLSLHDCRRFGDL---PLIGELSLLEILDLSKSD-VS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLS-RLRKLEE  237 (397)
Q Consensus       165 ~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~-~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~  237 (397)
                      ++|++++|.-...-   +-...+..++.+...+|. ..  .+-..-+.+.-+..+++..|+.++......+. .+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            99999998653331   234455556777666652 11  22222233344556666677777765543233 4677888


Q ss_pred             EEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCC-ccc--CCCccEEEEEecCcccchhhhHHHH
Q 047708          238 LYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSS-DMS--FQNLTSFSITIGDLAAGFISAAIEV  313 (397)
Q Consensus       238 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~~  313 (397)
                      |..++|...+..         .+..--.+..+|+.|.+..++ +...-. .++  +++|+.+++..+.....   ..+.+
T Consensus       299 l~~s~~t~~~d~---------~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d---~tL~s  366 (483)
T KOG4341|consen  299 LCYSSCTDITDE---------VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD---GTLAS  366 (483)
T ss_pred             hcccCCCCCchH---------HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh---hhHhh
Confidence            888877664321         222333457888899888887 332221 234  78899888887765433   22455


Q ss_pred             hhhhcccccccccceecc--cccccc-----hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCce
Q 047708          314 FSRKFKKRCSRAMGLSQD--MRISGV-----HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMK  386 (397)
Q Consensus       314 l~~~~~~~~~~L~~L~l~--~~~~~l-----p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~  386 (397)
                      ++.    .++.|+++++.  ..++..     ....... ..|+.+.+.+|+.+.+-..+ ....+++||.+++.+|....
T Consensus       367 ls~----~C~~lr~lslshce~itD~gi~~l~~~~c~~-~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  367 LSR----NCPRLRVLSLSHCELITDEGIRHLSSSSCSL-EGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             hcc----CCchhccCChhhhhhhhhhhhhhhhhccccc-cccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhh
Confidence            555    68888888883  233221     2222222 57888999999988776422 24577889999998887655


Q ss_pred             E
Q 047708          387 C  387 (397)
Q Consensus       387 ~  387 (397)
                      +
T Consensus       441 k  441 (483)
T KOG4341|consen  441 K  441 (483)
T ss_pred             h
Confidence            4

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.7e-09  Score=90.96  Aligned_cols=60  Identities=20%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             ccccccceecccccccchHH---HHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708          321 RCSRAMGLSQDMRISGVHSW---IKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC  382 (397)
Q Consensus       321 ~~~~L~~L~l~~~~~~lp~~---~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c  382 (397)
                      .|+++..|++..+..--|..   +.++ +.|++|.++.|..+.--- -......|+|.+|++.||
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~lSlsRCY~i~p~~-~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQHLSLSRCYDIIPET-LLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhc-chheeeehhhhcCCChHH-eeeeccCcceEEEEeccc
Confidence            45566666652222211222   2222 567777777776553221 123456677777777665

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=1.6e-07  Score=93.01  Aligned_cols=105  Identities=26%  Similarity=0.318  Sum_probs=85.1

Q ss_pred             cCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708          163 NLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM  240 (397)
Q Consensus       163 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  240 (397)
                      .++.|+++++.+.+.+| .++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            47788999988877666 8889999999999999887 78888999999999999996666677776 889999999999


Q ss_pred             ecccccccccCCCccCccccccccCC-CCCCCEEEEeccC
Q 047708          241 SRSFHHWQFEGEEDSSSNAKFIELGS-LSRLTSLHIHIPN  279 (397)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  279 (397)
                      ++|.+.+.+|           ..++. ..++..+++.+|.
T Consensus       498 s~N~l~g~iP-----------~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVP-----------AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCC-----------hHHhhccccCceEEecCCc
Confidence            9999888543           44443 3466788888876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=4.1e-08  Score=65.47  Aligned_cols=59  Identities=36%  Similarity=0.506  Sum_probs=36.2

Q ss_pred             CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCcc
Q 047708          115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCR  173 (397)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~  173 (397)
                      ++|+.|++++|.+..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34566666666666666666666666666666666665543 355666666666666654

...

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=2.5e-07  Score=91.59  Aligned_cols=107  Identities=25%  Similarity=0.364  Sum_probs=92.7

Q ss_pred             cccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecC
Q 047708          140 DLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLT  216 (397)
Q Consensus       140 ~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~  216 (397)
                      .++.|+|+++.+ ..+|..++.+++|+.|++++|.+.+.+| .++.+++|+.|++++|.+. .+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            478899999988 6789999999999999999999987776 8999999999999999998 789999999999999999


Q ss_pred             CCCCCCCCchhhhcC-CCCCCEEEeecccccc
Q 047708          217 DCDDLELIPRGVLSR-LRKLEELYMSRSFHHW  247 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~  247 (397)
                      +|...+.+|.. ++. ..++..+++.+|....
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCcccc
Confidence            97777788887 544 4577888888886543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=3.7e-09  Score=90.18  Aligned_cols=174  Identities=20%  Similarity=0.206  Sum_probs=86.6

Q ss_pred             CccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCc---cccCCCCCCEE
Q 047708          116 KLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEIL  190 (397)
Q Consensus       116 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L  190 (397)
                      .|+.|+++...++ .--..++..|..|+.|.+.+..+ ..+...+.+-.+|+.|+++.|+-...-.   -+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4566666555422 11222345566666666666665 3344455556666666666654322211   34556666666


Q ss_pred             EccCCCCC--ccchhhhC-CCCCCeeecCCCCCC---CCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccccc
Q 047708          191 DLSKSDVS--EIPISFGR-LSHLRLLDLTDCDDL---ELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL  264 (397)
Q Consensus       191 ~l~~~~~~--~lp~~i~~-l~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l  264 (397)
                      +++.|.+.  .+...+.. -.+|..|++++|...   ..+. ....++++|.+|+++.|.....          ..+.++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~----------~~~~~~  334 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKN----------DCFQEF  334 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCc----------hHHHHH
Confidence            66666433  12112221 135555666654221   1111 1234566666666666554331          334455


Q ss_pred             CCCCCCCEEEEeccCCCCCCC---ccc-CCCccEEEEEecC
Q 047708          265 GSLSRLTSLHIHIPNGKIMSS---DMS-FQNLTSFSITIGD  301 (397)
Q Consensus       265 ~~l~~L~~L~l~~~~~~~~~~---~~~-~~~L~~L~l~~~~  301 (397)
                      -+++.|++|.++.|..- .|.   .+. .|+|.+|++.+|-
T Consensus       335 ~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence            56666666666665421 111   133 5667777766553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.47  E-value=1.4e-07  Score=62.87  Aligned_cols=59  Identities=29%  Similarity=0.491  Sum_probs=53.7

Q ss_pred             ccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC
Q 047708           93 EDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG  151 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  151 (397)
                      ++++.|++.+|++..++...  .+++|+.|++++|.+..+++..|.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999999988655  899999999999999999998899999999999999864

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.41  E-value=2.9e-08  Score=93.70  Aligned_cols=175  Identities=26%  Similarity=0.276  Sum_probs=88.3

Q ss_pred             cccccCceEEccCCCcccCCC-cCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708           90 NKFEDLTGISLMFNDIHEVPD-ELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS  168 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  168 (397)
                      ..++++..+++..|.+..+.. ...+++|+.|++++|.+..+..  +..++.|+.|++++|.+..+.. +..+.+|+.++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~  168 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLD  168 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence            345556666666666666555 3356666666666666555544  3455556666666666544432 33455666666


Q ss_pred             ccCccCcCCCcc-ccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCC--CCEEEeecccc
Q 047708          169 LHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRK--LEELYMSRSFH  245 (397)
Q Consensus       169 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~  245 (397)
                      +++|.+....+. ...+.+++.+.+.++.+..+. .+..+..+..+++.. +.+..+-.  +..+..  |+++++.++.+
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhcccCcc
Confidence            666555333222 355555666666555544332 222222233333333 22222221  122222  66666666665


Q ss_pred             cccccCCCccCccccccccCCCCCCCEEEEeccCCCCC
Q 047708          246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM  283 (397)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  283 (397)
                      ..            ....+..+..+..|++..++....
T Consensus       245 ~~------------~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  245 SR------------SPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             cc------------ccccccccccccccchhhcccccc
Confidence            43            114455566677777776664433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.41  E-value=1.2e-08  Score=91.02  Aligned_cols=256  Identities=18%  Similarity=0.151  Sum_probs=163.8

Q ss_pred             CCccEEEccCCC-CcccC-hhhhcCCCcccEEEcCCCCC-C-CCChhhc-CcccCcEEEccCccCcCCC--c-cccCCCC
Q 047708          115 PKLQALLLQENS-LLVIP-DRFFQGMKDLKVLDMGGIRG-F-SLPSSLS-FLINLRTLSLHDCRRFGDL--P-LIGELSL  186 (397)
Q Consensus       115 ~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~l~~~~~-~-~l~~~~~-~l~~L~~L~l~~~~~~~~~--~-~~~~l~~  186 (397)
                      ..|+.|.+.|+. ..+-+ ..+...++++..|.+.++.. . ..-.++. .+..|+++++..|......  . -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            468888888887 33322 23446789999998888864 1 1112233 3678888888886543332  2 3446788


Q ss_pred             CCEEEccCC-CCC--ccchhhhCCCCCCeeecCCCCCCCCCchh-hhcCCCCCCEEEeecccccccccCCCccCcccccc
Q 047708          187 LEILDLSKS-DVS--EIPISFGRLSHLRLLDLTDCDDLELIPRG-VLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI  262 (397)
Q Consensus       187 L~~L~l~~~-~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  262 (397)
                      |+++++++| .++  .+..-...+..++.+...+|...+.-... .-+.+..+.++++..|....         +...+.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT---------D~~~~~  288 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT---------DEDLWL  288 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc---------chHHHH
Confidence            899998888 344  34334455666777766666554321111 11345556667766665443         334555


Q ss_pred             ccCCCCCCCEEEEeccC-CCCCCCc-cc--CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccch
Q 047708          263 ELGSLSRLTSLHIHIPN-GKIMSSD-MS--FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVH  338 (397)
Q Consensus       263 ~l~~l~~L~~L~l~~~~-~~~~~~~-~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp  338 (397)
                      .-..+..|+.|+.+++. .+..+-+ ++  +.+|+.|-++.|.....   .++..+..    .++.|+.+++......+.
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---~~ft~l~r----n~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---RGFTMLGR----NCPHLERLDLEECGLITD  361 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---hhhhhhhc----CChhhhhhcccccceehh
Confidence            55678899999998887 3333323 44  89999999999987644   33455655    688999999933333233


Q ss_pred             HHHHHHH---hhccceecccCCChhhhhhc-c--ccCCCCCccEEEEeccCCce
Q 047708          339 SWIKNLL---LRSEILALVDVNDLENIVSD-L--ANDGFNELMFLGIFGCNEMK  386 (397)
Q Consensus       339 ~~~~~~~---~~L~~L~l~~c~~l~~l~~~-~--~~~~~~~L~~L~i~~c~~L~  386 (397)
                      ..+-++.   +.|+.|.|++|..+++.... +  ...+...|+.+++.+||.+.
T Consensus       362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence            3344433   68999999999988877321 1  23567889999999988764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.38  E-value=8.3e-08  Score=83.84  Aligned_cols=40  Identities=18%  Similarity=0.050  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHhhcceeeecCCcCeEEechHHHHHHHHHhc
Q 047708           32 GRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIAS   71 (397)
Q Consensus        32 ~~~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~~~~~   71 (397)
                      +..+.++..+....=+...+-++.+.=-...+.++..+++
T Consensus        17 ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~   56 (382)
T KOG1909|consen   17 EDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS   56 (382)
T ss_pred             hhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhh
Confidence            3355566666554444433333333334455555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=2.2e-09  Score=101.77  Aligned_cols=131  Identities=23%  Similarity=0.170  Sum_probs=92.8

Q ss_pred             cccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCC
Q 047708          140 DLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD  219 (397)
Q Consensus       140 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~  219 (397)
                      .|.+.+.++|.+..+..++.-++.|+.|++++|.+.... .+..+++|++||++.|.++.+|.--..-.+|..|.+++ |
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-N  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-c
Confidence            366667777777666677777888888888888875544 77788888888888888887775333333488888887 5


Q ss_pred             CCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC
Q 047708          220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS  284 (397)
Q Consensus       220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  284 (397)
                      .++.+-.  +.++.+|+.|++++|.+.+.          .-+..+..+..|+.|.+.+|.+..-|
T Consensus       243 ~l~tL~g--ie~LksL~~LDlsyNll~~h----------seL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  243 ALTTLRG--IENLKSLYGLDLSYNLLSEH----------SELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             HHHhhhh--HHhhhhhhccchhHhhhhcc----------hhhhHHHHHHHHHHHhhcCCccccCH
Confidence            6666554  77888888888888877653          22344555677788888887654444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.25  E-value=1.7e-07  Score=88.64  Aligned_cols=192  Identities=24%  Similarity=0.254  Sum_probs=124.8

Q ss_pred             ccccCceEEccCCCcccCCC-cCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708           91 KFEDLTGISLMFNDIHEVPD-ELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL  169 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  169 (397)
                      .+..+..+++..+.+..+-. ...+.+|+.|++.+|.+..+... ...+++|++|++++|.+..+.. +..+..|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc-hhhccchhhhee
Confidence            44555666677776666333 33678888888888887666543 3678888888888888876643 666777888888


Q ss_pred             cCccCcCCCccccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccc
Q 047708          170 HDCRRFGDLPLIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQ  248 (397)
Q Consensus       170 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  248 (397)
                      .+|.+ ..++.+..+..|+.++++.|.+..+... ...+.+++.+.+.+ +.+..+..  +..+..+..+++..|.+.. 
T Consensus       148 ~~N~i-~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~-  222 (414)
T KOG0531|consen  148 SGNLI-SDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK-  222 (414)
T ss_pred             ccCcc-hhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee-
Confidence            88877 4445555688888888888887766553 46777888888877 44444432  3334444444555555543 


Q ss_pred             ccCCCccCccccccccCCCCC--CCEEEEeccCCCCCCCccc-CCCccEEEEEecC
Q 047708          249 FEGEEDSSSNAKFIELGSLSR--LTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGD  301 (397)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~  301 (397)
                                  ...+..+..  |+.+++.++.....+..+. +..+..|++..+.
T Consensus       223 ------------~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  223 ------------LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             ------------ccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence                        222333333  7888888888766644444 6666666666443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=2.2e-07  Score=70.39  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=82.1

Q ss_pred             CceEEccCCCcccCCCcC----CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           95 LTGISLMFNDIHEVPDEL----ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      +..++++.|.+-.++...    ....|...++++|.+.++|..+-..++.+..|++++|.+.++|.++..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            345566666554433322    5567777888888888888887777888888888888888888888888888888888


Q ss_pred             CccCcCCCccccCCCCCCEEEccCCCCCccchh
Q 047708          171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPIS  203 (397)
Q Consensus       171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~  203 (397)
                      .|.+...+..+..|.+|-.|+..++....+|.+
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            888877776777788888888877777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.04  E-value=8.6e-08  Score=91.33  Aligned_cols=154  Identities=20%  Similarity=0.137  Sum_probs=106.0

Q ss_pred             CCccccccCceEEccCCCcccCCCcC---------------------------------CCCCccEEEccCCCCcccChh
Q 047708           87 PSINKFEDLTGISLMFNDIHEVPDEL---------------------------------ECPKLQALLLQENSLLVIPDR  133 (397)
Q Consensus        87 ~~~~~~~~l~~l~l~~~~~~~~~~~~---------------------------------~~~~L~~L~l~~~~~~~~~~~  133 (397)
                      -++..++.||+|-+.++++..+....                                 .+.+|.+.++++|.+..+..+
T Consensus       103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S  182 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES  182 (1096)
T ss_pred             ceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence            34456788899888888765422111                                 122344444555554444444


Q ss_pred             hhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCe
Q 047708          134 FFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRL  212 (397)
Q Consensus       134 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  212 (397)
                       +.-++.|+.|+|++|++..+. .+..+++|++||+++|.+...+. ....+. |+.|.+++|.++++ .++.++.+|+.
T Consensus       183 -Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~  258 (1096)
T KOG1859|consen  183 -LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYG  258 (1096)
T ss_pred             -HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhc
Confidence             366788999999999987665 68889999999999998755543 333444 99999999988877 57889999999


Q ss_pred             eecCCCCCCCCCc-hhhhcCCCCCCEEEeecccc
Q 047708          213 LDLTDCDDLELIP-RGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       213 L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~  245 (397)
                      |+++.| .+.... ...+..+..|+.|++.+|.+
T Consensus       259 LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  259 LDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            999984 333211 11256677788888888764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=2.8e-06  Score=84.19  Aligned_cols=132  Identities=20%  Similarity=0.170  Sum_probs=66.6

Q ss_pred             CCccEEEccCCC-C-cccChhhhcCCCcccEEEcCCCCC--CCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEE
Q 047708          115 PKLQALLLQENS-L-LVIPDRFFQGMKDLKVLDMGGIRG--FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEIL  190 (397)
Q Consensus       115 ~~L~~L~l~~~~-~-~~~~~~~~~~l~~L~~L~l~~~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  190 (397)
                      .+|+.|+++|.. + ..=+..+...+|+|+.|.+.+-.+  .++-.-..++++|+.||++++++ ..+.++++|++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCcHHHhccccHHHH
Confidence            455666665544 2 122223334466666666666554  22233344566666666666665 223566666666666


Q ss_pred             EccCCCCCccc--hhhhCCCCCCeeecCCCCCCCCC--chhh---hcCCCCCCEEEeecccccc
Q 047708          191 DLSKSDVSEIP--ISFGRLSHLRLLDLTDCDDLELI--PRGV---LSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       191 ~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~--~~~~---~~~l~~L~~L~l~~~~~~~  247 (397)
                      .+.+-.+..-.  ..+.++++|++||++.......-  ....   -..+|+|+.||.++..+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            66554444222  35556666666666652222111  1100   1236666777666655544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=1.8e-06  Score=74.04  Aligned_cols=103  Identities=19%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             ceEEccCCCcccCCCcC----CCCCccEEEccCCCCccc--ChhhhcCCCcccEEEcCCCCCCCCChhh-cCcccCcEEE
Q 047708           96 TGISLMFNDIHEVPDEL----ECPKLQALLLQENSLLVI--PDRFFQGMKDLKVLDMGGIRGFSLPSSL-SFLINLRTLS  168 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~  168 (397)
                      ..+.+.++.+.......    .++.++.+++.+|.+.+-  ...+..++|.|++|+++.|++...-+.. ....+|+.|.
T Consensus        48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV  127 (418)
T ss_pred             hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence            34555555555432221    567778888888874332  2345677888888888888774332323 3566788888


Q ss_pred             ccCccCcCCC--ccccCCCCCCEEEccCCCCC
Q 047708          169 LHDCRRFGDL--PLIGELSLLEILDLSKSDVS  198 (397)
Q Consensus       169 l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~  198 (397)
                      +.++.+.+.-  ..+..+|.++.|.++.|++.
T Consensus       128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             EcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            8887765433  25667777777777776443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.97  E-value=4.9e-06  Score=82.51  Aligned_cols=56  Identities=27%  Similarity=0.407  Sum_probs=25.1

Q ss_pred             cccCcEEEccCccCcCCC--ccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCC
Q 047708          161 LINLRTLSLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTD  217 (397)
Q Consensus       161 l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  217 (397)
                      +++|+.|.+++-.+...-  .-..++++|..||+++++++.+ .+++++++|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence            445555555443331110  1233445555555555554444 4445555555554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=1.4e-05  Score=64.96  Aligned_cols=80  Identities=24%  Similarity=0.232  Sum_probs=35.0

Q ss_pred             CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC--hhhcCcccCcEEEccCc
Q 047708           95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP--SSLSFLINLRTLSLHDC  172 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~  172 (397)
                      ...+++..|++..++....++.|.+|.+.+|++..+.+.+-.-+++|..|.+.+|++..+.  ..+..++.|++|.+-+|
T Consensus        44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence            3344444444444444334444555555555544444444333444444555444442221  11333344444444444


Q ss_pred             cC
Q 047708          173 RR  174 (397)
Q Consensus       173 ~~  174 (397)
                      ..
T Consensus       124 pv  125 (233)
T KOG1644|consen  124 PV  125 (233)
T ss_pred             ch
Confidence            43

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=2.6e-05  Score=63.44  Aligned_cols=120  Identities=22%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             ceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcC-cccCcEEEccCcc
Q 047708           96 TGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSF-LINLRTLSLHDCR  173 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~  173 (397)
                      +.+++.+..+..+.... -......+++++|.+..++.  |..++.|.+|.++.|.+..+.+.+.. +++|..|.+.+|+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            44555555444333322 34567788999999777765  78999999999999999888666666 6789999999999


Q ss_pred             CcCCC--ccccCCCCCCEEEccCCCCCccc----hhhhCCCCCCeeecCC
Q 047708          174 RFGDL--PLIGELSLLEILDLSKSDVSEIP----ISFGRLSHLRLLDLTD  217 (397)
Q Consensus       174 ~~~~~--~~~~~l~~L~~L~l~~~~~~~lp----~~i~~l~~L~~L~l~~  217 (397)
                      +....  ..+..+++|+.|.+-+|.++.-+    -.+..+++|+.|+..+
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            86543  47888999999999999887544    3678899999999877

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=6.1e-05  Score=69.21  Aligned_cols=73  Identities=19%  Similarity=0.341  Sum_probs=41.5

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEE
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILD  191 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  191 (397)
                      .+.+++.|++++|.+..+|.    -..+|+.|.+++|.. ..+|..+  ..+|++|++++|.....+|     .+|+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEE
Confidence            35677777777777666661    223577777776543 5555433  2467777777763222222     2355666


Q ss_pred             ccCCC
Q 047708          192 LSKSD  196 (397)
Q Consensus       192 l~~~~  196 (397)
                      +..+.
T Consensus       119 L~~n~  123 (426)
T PRK15386        119 IKGSA  123 (426)
T ss_pred             eCCCC
Confidence            65543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=2.6e-05  Score=47.67  Aligned_cols=32  Identities=34%  Similarity=0.625  Sum_probs=14.9

Q ss_pred             CCCEEEccCCCCCccchhhhCCCCCCeeecCC
Q 047708          186 LLEILDLSKSDVSEIPISFGRLSHLRLLDLTD  217 (397)
Q Consensus       186 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  217 (397)
                      +|++|++++|.++.+|..++++++|+.|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence            34455555555555544445555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=2.2e-05  Score=47.93  Aligned_cols=35  Identities=37%  Similarity=0.415  Sum_probs=17.5

Q ss_pred             cccEEEcCCCCCCCCChhhcCcccCcEEEccCccC
Q 047708          140 DLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus       140 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  174 (397)
                      +|++|++++|.+..+|..++++++|++|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            45555555555555554455555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=8.5e-05  Score=68.25  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=37.4

Q ss_pred             cccCceEEccCCCcccCCCcCCCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCC-CCCCCCh
Q 047708           92 FEDLTGISLMFNDIHEVPDELECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGI-RGFSLPS  156 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~  156 (397)
                      +.+++.|+++.|.+..+|.  -.+.|+.|.+.+|. +..+|..+   .++|++|++++| .+..+|.
T Consensus        51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc
Confidence            4556777777777776662  12357777777766 55555432   246777777776 4455554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=5.3e-06  Score=63.07  Aligned_cols=111  Identities=18%  Similarity=0.192  Sum_probs=82.8

Q ss_pred             CccEEEccCCCCcccChhh--hcCCCcccEEEcCCCCCCCCChhhcC-cccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708          116 KLQALLLQENSLLVIPDRF--FQGMKDLKVLDMGGIRGFSLPSSLSF-LINLRTLSLHDCRRFGDLPLIGELSLLEILDL  192 (397)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  192 (397)
                      .+..++++.|.+..+++..  .....+|...++++|.+..+|+.+.. ++.+..+++.+|.+...|..+..++.|+.|++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            4556677777755444332  35566788888888888888887765 45788888888888777768888888888888


Q ss_pred             cCCCCCccchhhhCCCCCCeeecCCCCCCCCCchh
Q 047708          193 SKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRG  227 (397)
Q Consensus       193 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~  227 (397)
                      +.|.+...|..+..+.+|..|+..+ +....+|-.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d  141 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD  141 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence            8888888888888888888888777 555566654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=9.6e-06  Score=69.77  Aligned_cols=179  Identities=18%  Similarity=0.172  Sum_probs=108.7

Q ss_pred             ccEEEccCCCCcccC--hhhhcCCCcccEEEcCCCCC---CCCChhhcCcccCcEEEccCccCcCCCccc-cCCCCCCEE
Q 047708          117 LQALLLQENSLLVIP--DRFFQGMKDLKVLDMGGIRG---FSLPSSLSFLINLRTLSLHDCRRFGDLPLI-GELSLLEIL  190 (397)
Q Consensus       117 L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L  190 (397)
                      ++.|.+.++.+....  ..+...+..++.+||.+|.+   .++..-+.++++|++|+++.|.+...+... ..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            335555666543332  23345678899999999988   344455677999999999999987766655 578899999


Q ss_pred             EccCCCCC--ccchhhhCCCCCCeeecCCCCC---------CCCCchh-------------------hhcCCCCCCEEEe
Q 047708          191 DLSKSDVS--EIPISFGRLSHLRLLDLTDCDD---------LELIPRG-------------------VLSRLRKLEELYM  240 (397)
Q Consensus       191 ~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~---------~~~~~~~-------------------~~~~l~~L~~L~l  240 (397)
                      -+.++.+.  .....+..++.++.|+++.|+.         .+.+...                   .-...+++..+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            99998665  5556667777777777776311         1111111                   0112344555555


Q ss_pred             ecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC--Cccc-CCCccEEEEEecCcccc
Q 047708          241 SRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS--SDMS-FQNLTSFSITIGDLAAG  305 (397)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~-~~~L~~L~l~~~~~~~~  305 (397)
                      ..|.+...          ..-+....++.+.-|.+..+++++..  +.+. ++.|..|.+..++.++.
T Consensus       207 ~e~PlK~~----------s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  207 CEGPLKTE----------SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             ecCcccch----------hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            55543321          11122233455556666666644333  2355 78888888877776543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.59  E-value=8.6e-05  Score=63.25  Aligned_cols=188  Identities=16%  Similarity=0.120  Sum_probs=88.4

Q ss_pred             hcCcccCcEEEccCccCcCCCc-----cccCCCCCCEEEccCCCCCccc--------------hhhhCCCCCCeeecCCC
Q 047708          158 LSFLINLRTLSLHDCRRFGDLP-----LIGELSLLEILDLSKSDVSEIP--------------ISFGRLSHLRLLDLTDC  218 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~lp--------------~~i~~l~~L~~L~l~~~  218 (397)
                      +-++++|+..++++|.+....+     -++.-..|.+|.+++|.+..+.              .-..+-+.|+.....+ 
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-
Confidence            3344555555555555433221     2444555566666555544221              1123345666666666 


Q ss_pred             CCCCCCchh----hhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC-----Cccc-
Q 047708          219 DDLELIPRG----VLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-----SDMS-  288 (397)
Q Consensus       219 ~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~-  288 (397)
                      +.+...|..    .+....+|+++.+..|.+.-.-      ...-....+..+.+|+.|++..|.++...     ..+. 
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg------v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~  240 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEG------VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE  240 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcch------hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence            444433321    1233356777777766654210      00112234445667777777776532221     1133 


Q ss_pred             CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec--ccc----cc--cchHHHHHHHhhccceeccc
Q 047708          289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ--DMR----IS--GVHSWIKNLLLRSEILALVD  355 (397)
Q Consensus       289 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l--~~~----~~--~lp~~~~~~~~~L~~L~l~~  355 (397)
                      ++.|+.|.+.+|-....-..+.+..+..   ...++|..|..  +..    +.  .+|.......+-|..|.+.+
T Consensus       241 W~~lrEL~lnDClls~~G~~~v~~~f~e---~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng  312 (388)
T COG5238         241 WNLLRELRLNDCLLSNEGVKSVLRRFNE---KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG  312 (388)
T ss_pred             cchhhhccccchhhccccHHHHHHHhhh---hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence            5567777777665543322333344444   33444444444  111    11  24444443335666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.11  E-value=0.0012  Score=56.46  Aligned_cols=186  Identities=20%  Similarity=0.198  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhcceeeecCCcCeEEechHHHHHHHHHhcccceEEec------CCccCC--------CCCccccccCceEE
Q 047708           34 ARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKA------GVELKD--------WPSINKFEDLTGIS   99 (397)
Q Consensus        34 ~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~l~~l~   99 (397)
                      .+.|+.+|....=+...+-.+.+.-.+.++.++..++..+...+..      |.....        .+....+++++.++
T Consensus        19 vk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~   98 (388)
T COG5238          19 VKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD   98 (388)
T ss_pred             hhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence            4667777765433333334445556677888888777733332211      111111        11224456666666


Q ss_pred             ccCCCccc-CCCcC-----CCCCccEEEccCCCCcccChhhh-------------cCCCcccEEEcCCCCCCCCChh---
Q 047708          100 LMFNDIHE-VPDEL-----ECPKLQALLLQENSLLVIPDRFF-------------QGMKDLKVLDMGGIRGFSLPSS---  157 (397)
Q Consensus       100 l~~~~~~~-~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~l~~~---  157 (397)
                      ++.|.+.. .|+..     .-..|..|.+++|.++.+...-+             ..-|.|++.....|++...+..   
T Consensus        99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a  178 (388)
T COG5238          99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA  178 (388)
T ss_pred             ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence            66665543 22221     34556666666665443332111             2344556665555555333321   


Q ss_pred             --hcCcccCcEEEccCccCcCC-C-----ccccCCCCCCEEEccCCCCC-----ccchhhhCCCCCCeeecCCCC
Q 047708          158 --LSFLINLRTLSLHDCRRFGD-L-----PLIGELSLLEILDLSKSDVS-----EIPISFGRLSHLRLLDLTDCD  219 (397)
Q Consensus       158 --~~~l~~L~~L~l~~~~~~~~-~-----~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~  219 (397)
                        +..-.+|+++.+..|.+... .     -.+..+.+|+.|++..|.++     .+...+...+.|+.|.+.+|.
T Consensus       179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence              11123455555555544221 0     12334455555555555444     122233334445555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.07  E-value=6.7e-05  Score=72.59  Aligned_cols=62  Identities=27%  Similarity=0.327  Sum_probs=27.2

Q ss_pred             CCCCCEEEccCCC-CC--ccchhhhCCCCCCeeecCCCCCCCCCch-hhhcCCCCCCEEEeecccc
Q 047708          184 LSLLEILDLSKSD-VS--EIPISFGRLSHLRLLDLTDCDDLELIPR-GVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       184 l~~L~~L~l~~~~-~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  245 (397)
                      +++|+.+++..+. ++  .+......+++|++|.+.+|..++.... .+...++.|++|++++|..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555555555554 33  1111122245555555555444322221 1123455556665555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=2.5e-05  Score=66.62  Aligned_cols=98  Identities=24%  Similarity=0.215  Sum_probs=71.9

Q ss_pred             cccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC--hhhcCcccCcEEEc
Q 047708           92 FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP--SSLSFLINLRTLSL  169 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l  169 (397)
                      +.+++.|+..++.+.++.-..+++.|++|.++-|.+..+.+  +..|..|+.|+|..|.+..+.  ..+.++++|+.|-+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            44567788888888877655578888888888888777766  678888888888888886553  34667888888888


Q ss_pred             cCccCcCCCc------cccCCCCCCEEE
Q 047708          170 HDCRRFGDLP------LIGELSLLEILD  191 (397)
Q Consensus       170 ~~~~~~~~~~------~~~~l~~L~~L~  191 (397)
                      ..|.-.+..+      .+.-|++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            8876654432      456677777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.00043  Score=58.81  Aligned_cols=83  Identities=28%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             hcCCCcccEEEcCCCC--C-CCCChhhcCcccCcEEEccCccCc--CCCccccCCCCCCEEEccCCCCCccc----hhhh
Q 047708          135 FQGMKDLKVLDMGGIR--G-FSLPSSLSFLINLRTLSLHDCRRF--GDLPLIGELSLLEILDLSKSDVSEIP----ISFG  205 (397)
Q Consensus       135 ~~~l~~L~~L~l~~~~--~-~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp----~~i~  205 (397)
                      |..+++|++|.++.|.  + ..++.....+++|+++++++|.+.  ..++.+..+.+|..|++.+|..+.+-    ..+.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            3445555555555552  2 223333334455555555555542  22234445555666666665444322    2344


Q ss_pred             CCCCCCeeecCC
Q 047708          206 RLSHLRLLDLTD  217 (397)
Q Consensus       206 ~l~~L~~L~l~~  217 (397)
                      -+++|++|+-..
T Consensus       141 ll~~L~~LD~~d  152 (260)
T KOG2739|consen  141 LLPSLKYLDGCD  152 (260)
T ss_pred             Hhhhhccccccc
Confidence            455666665554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.93  E-value=0.00036  Score=67.48  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             ccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708          348 SEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL  389 (397)
Q Consensus       348 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~  389 (397)
                      ++.|.+..|...+..........+..++.+.+.+|+.+....
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence            677777777766554322221126667777777777665443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=4.6e-05  Score=65.05  Aligned_cols=78  Identities=22%  Similarity=0.179  Sum_probs=38.0

Q ss_pred             CCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccch--hhhCCCCCCeeec
Q 047708          138 MKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI--SFGRLSHLRLLDL  215 (397)
Q Consensus       138 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l  215 (397)
                      +.+.+.|+..||.+..+.- +.+|+.|++|.++-|.+ ..+..+..+++|++|+++.|.+..+.+  -+.++++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3445556666665544321 33455556666555555 222334455555555555555443321  3344444444444


Q ss_pred             CC
Q 047708          216 TD  217 (397)
Q Consensus       216 ~~  217 (397)
                      ..
T Consensus        96 ~E   97 (388)
T KOG2123|consen   96 DE   97 (388)
T ss_pred             cc
Confidence            44

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.56  E-value=0.0015  Score=55.66  Aligned_cols=111  Identities=26%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCC--C-CcccChhhhcCCCcccEEEcCCCCCCCC--ChhhcCcccCc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQEN--S-LLVIPDRFFQGMKDLKVLDMGGIRGFSL--PSSLSFLINLR  165 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~-~~~~~~~~~~~l~~L~~L~l~~~~~~~l--~~~~~~l~~L~  165 (397)
                      .+..+..+++.+..++.+.....+++|+.|.++.|  + ...+... ...+++|++|++++|++..+  -..+..+.+|.
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            34556666777777777766668889999999999  4 3344433 35679999999999998542  12356678889


Q ss_pred             EEEccCccCcCCCc----cccCCCCCCEEEccCCCCCccch
Q 047708          166 TLSLHDCRRFGDLP----LIGELSLLEILDLSKSDVSEIPI  202 (397)
Q Consensus       166 ~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~lp~  202 (397)
                      .|++.+|..+..-.    .+.-+++|++|+-....-.+.|.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~  160 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE  160 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence            99999998766432    45667888888765544334444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.30  E-value=0.017  Score=44.65  Aligned_cols=79  Identities=14%  Similarity=0.221  Sum_probs=28.2

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEE
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEIL  190 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L  190 (397)
                      ++++|+.+.+.. .+..+....|..+.+|+.+.+..+ +..++. .+.++.+++.+.+.. ....... .+..+++|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            344455555442 234444444555555555555443 333322 233344455555533 1111111 34445555555


Q ss_pred             EccC
Q 047708          191 DLSK  194 (397)
Q Consensus       191 ~l~~  194 (397)
                      .+..
T Consensus        87 ~~~~   90 (129)
T PF13306_consen   87 DIPS   90 (129)
T ss_dssp             EETT
T ss_pred             ccCc
Confidence            5543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.89  E-value=0.021  Score=44.12  Aligned_cols=107  Identities=14%  Similarity=0.220  Sum_probs=55.7

Q ss_pred             cChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhC
Q 047708          130 IPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGR  206 (397)
Q Consensus       130 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~  206 (397)
                      ++...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..... .+..+++++.+.+.. .+..++. .+..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4556678888888888875 344443 34666778888888774 333332 667777788888865 4444443 4455


Q ss_pred             CCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708          207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR  242 (397)
Q Consensus       207 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  242 (397)
                      +++|+.+.+.. + +..++...+.++ +|+.+.+..
T Consensus        80 ~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence            77777777755 2 555666556666 777776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.28  E-value=0.0078  Score=30.43  Aligned_cols=19  Identities=53%  Similarity=0.819  Sum_probs=10.2

Q ss_pred             CCEEEccCCCCCccchhhh
Q 047708          187 LEILDLSKSDVSEIPISFG  205 (397)
Q Consensus       187 L~~L~l~~~~~~~lp~~i~  205 (397)
                      |++|++++|.++.+|..++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.93  E-value=0.0087  Score=30.27  Aligned_cols=17  Identities=47%  Similarity=0.598  Sum_probs=7.7

Q ss_pred             ccEEEcCCCCCCCCChh
Q 047708          141 LKVLDMGGIRGFSLPSS  157 (397)
Q Consensus       141 L~~L~l~~~~~~~l~~~  157 (397)
                      |++|++++|.+..+|.+
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.09  E-value=0.041  Score=25.78  Aligned_cols=16  Identities=38%  Similarity=0.646  Sum_probs=6.1

Q ss_pred             CCCEEEccCCCCCccc
Q 047708          186 LLEILDLSKSDVSEIP  201 (397)
Q Consensus       186 ~L~~L~l~~~~~~~lp  201 (397)
                      +|+.|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4455555555544443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=0.023  Score=46.74  Aligned_cols=39  Identities=10%  Similarity=-0.056  Sum_probs=19.7

Q ss_pred             hhccceecccCCChhhhhhccccCCCCCccEEEEeccCCc
Q 047708          346 LRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEM  385 (397)
Q Consensus       346 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L  385 (397)
                      ++|+.|+|++|+.+++-. -.....|++|+.|.|.+.|..
T Consensus       151 ~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             cchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhh
Confidence            455555555555555543 222335555555555554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=0.042  Score=45.23  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             hhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceE
Q 047708          346 LRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKC  387 (397)
Q Consensus       346 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~  387 (397)
                      +.++.|.+.+|..+.++..+.-.+.+|+|+.|+|++||.++.
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            588899999999999987666666889999999999998764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.06  E-value=0.32  Score=25.50  Aligned_cols=19  Identities=37%  Similarity=0.510  Sum_probs=11.4

Q ss_pred             CCCCEEEccCCCCCccchh
Q 047708          185 SLLEILDLSKSDVSEIPIS  203 (397)
Q Consensus       185 ~~L~~L~l~~~~~~~lp~~  203 (397)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.06  E-value=0.32  Score=25.50  Aligned_cols=19  Identities=37%  Similarity=0.510  Sum_probs=11.4

Q ss_pred             CCCCEEEccCCCCCccchh
Q 047708          185 SLLEILDLSKSDVSEIPIS  203 (397)
Q Consensus       185 ~~L~~L~l~~~~~~~lp~~  203 (397)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.36  E-value=0.51  Score=24.69  Aligned_cols=18  Identities=33%  Similarity=0.464  Sum_probs=7.6

Q ss_pred             CccEEEccCCCCcccChh
Q 047708          116 KLQALLLQENSLLVIPDR  133 (397)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~  133 (397)
                      +|+.|++.+|.+..+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            344444444444444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.36  E-value=0.51  Score=24.69  Aligned_cols=18  Identities=33%  Similarity=0.464  Sum_probs=7.6

Q ss_pred             CccEEEccCCCCcccChh
Q 047708          116 KLQALLLQENSLLVIPDR  133 (397)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~  133 (397)
                      +|+.|++.+|.+..+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            344444444444444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.16  E-value=0.012  Score=49.31  Aligned_cols=85  Identities=19%  Similarity=0.096  Sum_probs=63.6

Q ss_pred             hcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeee
Q 047708          135 FQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD  214 (397)
Q Consensus       135 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  214 (397)
                      +..++..++||++.+....+...+..++.|..|+++.+.+-..+...+++..+..++...|..+..|...+..+++++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            45667778888888877666666777777777888877775556677777777788887777778888888888888877


Q ss_pred             cCCCC
Q 047708          215 LTDCD  219 (397)
Q Consensus       215 l~~~~  219 (397)
                      ..++.
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            77633

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.88  E-value=0.31  Score=25.63  Aligned_cols=16  Identities=25%  Similarity=0.497  Sum_probs=12.3

Q ss_pred             CCCccEEEEeccCCce
Q 047708          371 FNELMFLGIFGCNEMK  386 (397)
Q Consensus       371 ~~~L~~L~i~~c~~L~  386 (397)
                      +|+|++|+|++|+.++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4778888888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.57  E-value=0.033  Score=46.85  Aligned_cols=94  Identities=13%  Similarity=0.004  Sum_probs=75.7

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL  192 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  192 (397)
                      .+...+.|+++.|+...+... |+.+..|..|+++.+.+..+|..++.+..++.+++..|.....|.+.++.+++++++.
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            678888999999986655544 5777788889999999999999999999999999999888777779999999999999


Q ss_pred             cCCCCC-ccchhhhCC
Q 047708          193 SKSDVS-EIPISFGRL  207 (397)
Q Consensus       193 ~~~~~~-~lp~~i~~l  207 (397)
                      .++.+. .+-..++.+
T Consensus       119 k~~~~~~~~~~~v~~c  134 (326)
T KOG0473|consen  119 KKTEFFRKLFGFVWSC  134 (326)
T ss_pred             ccCcchHHHHhHhhhh
Confidence            888755 333333433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 5e-20
 Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 30/205 (14%)

Query: 86  WPSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVL 144
                +   L  +++    + E+PD + +   L+ L L  N L  +P      +  L+ L
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS-LNRLREL 155

Query: 145 DMGG----------IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLS 193
            +            +           L+NL++L L        LP  I  L  L+ L + 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR 214

Query: 194 KSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253
            S +S +  +   L  L  LDL  C  L   P         L+ L +             
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILK------------ 261

Query: 254 DSSSNAKFI--ELGSLSRLTSLHIH 276
              SN   +  ++  L++L  L + 
Sbjct: 262 -DCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 5/148 (3%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDL 141
                      +L  + L +  I  +P  +     L++L ++ + L  +       +  L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH-LPKL 231

Query: 142 KVLDMGGIRGF-SLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSK-SDVS 198
           + LD+ G     + P        L+ L L DC     LPL I  L+ LE LDL    ++S
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 199 EIPISFGRLSHLRLLDLTDCDDLELIPR 226
            +P    +L    ++ +      +L   
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 44/237 (18%)

Query: 83  LKDWPSINKFEDLTGISLMFND---IHEVPDELEC---PKLQALLLQENSLLVIPDRFFQ 136
              W S  +  +     +       +    D LE    P   AL L+   L   PD+ F+
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR 102

Query: 137 GMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSK- 194
            +  L+ + +       LP ++     L TL+L        LP  I  L+ L  L +   
Sbjct: 103 -LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRAC 160

Query: 195 SDVSEIPISFGR---------LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245
            +++E+P              L +L+ L L +   +  +P   ++ L+ L+ L +     
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPAS-IANLQNLKSLKIR---- 214

Query: 246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDL 302
                   +S  +A    +  L +L  L +                L ++    G  
Sbjct: 215 --------NSPLSALGPAIHHLPKLEELDLR-----------GCTALRNYPPIFGGR 252

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 12/114 (10%), Positives = 24/114 (21%), Gaps = 8/114 (7%)

Query: 133 RFFQGMKDLKVLDMGGIRGF-SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILD 191
                    + L   G          LS          +              +  +I  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA---NSNNPQIET 62

Query: 192 LSKSDVSEIPISFGRLSHLRL--LDLTDCDDLELIPRGVLSRLRKLEELYMSRS 243
            +   +          +      L+L     L   P     RL  L+ + +  +
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 25/213 (11%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSL--LVIPDRFFQGMKDLKVLDMG 147
               T + L  N +  +P  +  +  +L  L L  N L       +   G   LK LD+ 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVSEIPI-SF 204
                ++ S+   L  L  L        +  +  +   L  L  LD+S +         F
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA-KFIE 263
             LS L +L +      E     + + LR L  L +S+                  + + 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ---------------CQLEQLS 191

Query: 264 LGSLSRLTSL-HIHIPNGKIMS-SDMSFQNLTS 294
             + + L+SL  +++ +    S     ++ L S
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 95  LTGISLMFNDIHEVPDELE-CPKLQALLLQENSLLVIPDR-FFQGMKDLKVLDMGGIRGF 152
           L  + L FN +  +        +L+ L  Q ++L  + +   F  +++L  LD+      
Sbjct: 80  LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 153 SLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIP-ISFGRLS 208
              +   + L +L  L +       +    +  EL  L  LDLS+  + ++   +F  LS
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
            L++L+++  +    +       L  L+ L  S 
Sbjct: 200 SLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 36/161 (22%)

Query: 95  LTGISLMFNDIHEVPDE---LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--I 149
           L  +    +++ ++ +    L    L  L +      V  +  F G+  L+VL M G   
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 150 RGFSLPSSLSFLINLRTLSLHDCR-------RFGDLPLIGELSL---------------- 186
           +   LP   + L NL  L L  C+        F  L  +  L++                
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 187 --LEILDLSKSDVSEIPIS--FGRLSHLRLLDLT----DCD 219
             L++LD S + +            S L  L+LT     C 
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 40/207 (19%), Positives = 61/207 (29%), Gaps = 44/207 (21%)

Query: 94  DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRG 151
             T I      +  VP  +       L L+ N L  +P   F  +  L  L +    +  
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 152 FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLR 211
               S   F                        + L+ LDLS + V  +  +F  L  L 
Sbjct: 67  KGCCSQSDF----------------------GTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 212 LLDLTDCDDLELIPRGVLSRLRKLEELYMS----RSFHHWQFEGEEDSSSNAKFIELGSL 267
            LD    +  ++    V   LR L  L +S    R   +  F G               L
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------L 149

Query: 268 SRLTSLHIHIPNGKIMSSDMSFQNLTS 294
           S L  L +   + +       F  L +
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRN 176

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           LT + L    + ++          LQ L +  N+   +    ++ +  L+VLD       
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 153 SLPSSL--SFLINLRTLSLH------DCR 173
           +        F  +L  L+L        C 
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFACTCE 265

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 45/199 (22%), Positives = 69/199 (34%), Gaps = 15/199 (7%)

Query: 90  NKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSL--LVIPDRFFQGMKDLKVLDMG 147
            K + L  ++   N       E++ P L+ L L  N L       +   G   LK LD+ 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVSEIPIS-F 204
                ++ S+   L  L  L        +  +  +   L  L  LD+S +         F
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS----RSFHHWQFEGEE-----DS 255
             LS L +L +      E     + + LR L  L +S           F         + 
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 256 SSNA-KFIELGSLSRLTSL 273
           +SN  K +  G   RLTSL
Sbjct: 502 ASNQLKSVPDGIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 25/220 (11%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IR 150
           L+ + L  N I  +          LQ L+  E +L  + +     +K LK L++    I+
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 151 GFSLPSSLSFLINLRTLSLHDCR----RFGDLPLIGELSLLEI-LDLSKSDVSEIPISFG 205
            F LP   S L NL  L L   +       DL ++ ++ LL + LDLS + ++ I     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG 265
           +   L  L L +  D   + +  +  L  LE   +              +  N +  +  
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF--------RNEGNLEKFDKS 249

Query: 266 SLSRLTSL--------HIHIPNGKIMSSDMSFQNLTSFSI 297
           +L  L +L        ++      I+       N++SFS+
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 95  LTGISLMFNDIHEVPDE-LECPKLQALLLQENSLLVIPDR-FFQGMKDLKVLDMGG--IR 150
           L  + L FN +  +    L   +L+ L  Q ++L  + +   F  +++L  LD+     R
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 151 GFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-FGRL 207
                   + L +L  L +       +    +  EL  L  LDLS+  + ++  + F  L
Sbjct: 435 VAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 208 SHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           S L++L++     L+ +P G+  RL  L+++++ 
Sbjct: 494 SSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 24/315 (7%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
                 + L FN +  +        P+LQ L L    +  I D  +Q +  L  L + G 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 150 RGFSLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI--SF 204
              SL   + S L +L+ L   +      L    IG L  L+ L+++ + +    +   F
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264
             L++L  LDL+    ++ I    L  L ++  L +S                   FI+ 
Sbjct: 146 SNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM----------NFIQP 194

Query: 265 GSLS--RLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRC 322
           G+    RL  L +      +       Q L    +    L        +E F +   +  
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 323 SRAMGLSQDM-RISGVHSWIKNLLLRSEILALVDV--NDLENIVSDLANDGFNELMFLGI 379
                    +  +      I +L      ++   +    +E +     N G+  L  +  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 380 FGCNEMKCLLNSLER 394
                    L SL+R
Sbjct: 315 KFGQFPTLKLKSLKR 329

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 94  DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS 153
            + G S   N + ++  EL    L  L L +  L  +    F  +  L+VL+M   +  S
Sbjct: 451 KMAGNSFQENFLPDIFTEL--RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 154 LPSS-LSFLINLRTLSLHDCRRFGDLPLIGELS 185
           +P      L +L+ + LH        P I  LS
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG---I 149
           L  + L  N +  +P+       KL+ L L+ N +  IP   F  +  L+ LD+G    +
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 150 RGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLS 208
              S   +   L NLR L+L  C    ++P +  L  L+ LDLS + +S I   SF  L 
Sbjct: 174 SYIS-EGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           HL+ L +     +++I R     L+ L E+ ++
Sbjct: 232 HLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLA 263

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 16/217 (7%)

Query: 92  FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
               + +  +  ++ EVPD +     + L L EN + +I    F+ ++ L++L +     
Sbjct: 42  SNQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 152 FSLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRL 207
            ++   + + L NL TL L D R    +P      LS L+ L L  + +  IP  +F R+
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 208 SHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR-------SFHHWQFEGEEDSSSNA- 259
             LR LDL +   L  I  G    L  L  L ++        +        E D S N  
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219

Query: 260 KFIELGSLSRLTSL-HIHIPNGKIMS-SDMSFQNLTS 294
             I  GS   L  L  + +   +I      +F NL S
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
             +   + L  N I  +  +     P L+ L L EN +  +    F  + +L+ L +   
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 150 RGFSLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFG 205
           R   +P    + L NL  L + +  +   L   +  +L  L+ L++  +D+  I   +F 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR----SFHHWQFEGEEDSSSNAKF 261
            L+ L  L L  C +L  IP   LS L  L  L +      +   + F+           
Sbjct: 150 GLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR---------- 198

Query: 262 IELGSLSRLTSLHIHIPNGKIMSSDMSFQNLT 293
                L RL  L I         +      L 
Sbjct: 199 -----LYRLKVLEISHWPYLDTMTPNCLYGLN 225

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 20/218 (9%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           L  + L  N +  +P  +      L  L + EN ++++ D  FQ + +LK L++G     
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 153 SLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLS 208
            +   + S L +L  L+L  C     +P   +  L  L +L L   +++ I   SF RL 
Sbjct: 142 YISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS----RSFHHWQFEG-----EEDSSSNA 259
            L++L+++    L+ +    L  L  L  L ++     +  +            + S N 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 260 -KFIELGSLSRLTSLH-IHIPNGKIMS-SDMSFQNLTS 294
              IE   L  L  L  I +  G++      +F+ L  
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 8/154 (5%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           L  ++L   ++  +P E       L  L L+  ++  I D  F+ +  LKVL++      
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 153 SLPSSLSF-LINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLS 208
              +      +NL +LS+  C     +P   +  L  L  L+LS + +S I       L 
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
            L+ + L     L ++       L  L  L +S 
Sbjct: 273 RLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSG 305

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           L  ++L +N I  +   +  E  +LQ + L    L V+    F+G+  L+VL++ G +  
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 153 SLP-SSLSFLINLRTLSLH------DCR 173
           +L  S    + NL TL L       DCR
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLACDCR 337

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 99  SLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SS 157
                    +P  L    +++L L  N +  I     +   +L+VL +   R  ++   +
Sbjct: 11  DGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 158 LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS--FGRLSHLRLL 213
              L +L  L L D      L     G LS L+ L+L  +    + ++  F  L++L+ L
Sbjct: 70  FYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 214 DLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSL 273
            + + +    I R   + L  L EL +            +  S       L S+  +  L
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKAL----SLRNYQSQS-------LKSIRDIHHL 177

Query: 274 HIHIPNGKIMSSDMSFQNLTSFS 296
            +H+ +      ++    L+S  
Sbjct: 178 TLHL-SESAFLLEIFADILSSVR 199

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 12/152 (7%)

Query: 94  DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--- 148
            +  + +    +      +     K++ + ++ + + ++P  F Q +K L+ LD+     
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 149 -IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGE----LSLLEILDLSKSDVSEIPIS 203
                   +      +L+TL L        +   GE    L  L  LD+S++    +P S
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL 235
                 +R L+L+    + ++   +   L  L
Sbjct: 406 CQWPEKMRFLNLSST-GIRVVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 32/175 (18%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPD--RFFQGMKDLKVLD 145
           S N   +    +               P LQ L+L +N L  +         +K+L  LD
Sbjct: 342 SENLMVEEYLKNSACKGA--------WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 146 MGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFG 205
           +       +P S  +   +R L+L        +        LE+LD+S +++    +   
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT-CIPQTLEVLDVSNNNLDSFSLFLP 451

Query: 206 RLSHLRL-------------------LDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           RL  L +                   + ++    L+ +P G+  RL  L+++++ 
Sbjct: 452 RLQELYISRNKLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 21/195 (10%), Positives = 58/195 (29%), Gaps = 48/195 (24%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           L  + +    +     +       +  L L  +    + + F   +  ++ L++      
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 153 SLPSS--------------------------------LSFLINLRTLSLHDCR------- 173
               S                                L +++ L  +   DC        
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269

Query: 174 RFGDLPLIGELSLLEILDLSKSDVSEIPIS------FGRLSHLRLLDLTDCDDLELIPRG 227
              +  ++ EL  +E + + +  + +  +       +  L  ++ + + +   + L+P  
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCS 328

Query: 228 VLSRLRKLEELYMSR 242
               L+ LE L +S 
Sbjct: 329 FSQHLKSLEFLDLSE 343

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG 148
           L  + +  N +  +PD    P L  + +  N L  +PD  F  +  L+ + +  
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 33/216 (15%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG- 148
                 I L  N I  VP      C  L  L L  N L  I    F G+  L+ LD+   
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 149 --IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-S 203
             +R    P++   L  L TL L  C    +L   L   L+ L+ L L  + +  +P  +
Sbjct: 91  AQLRSVD-PATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS----RSFHHWQFEGEEDSSSNA 259
           F  L +L  L L   + +  +P      L  L+ L +        H   F          
Sbjct: 149 FRDLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD-------- 199

Query: 260 KFIELGSLSRLTSLHIHIPNGKIMS-SDMSFQNLTS 294
                  L RL +L++      + +    +   L +
Sbjct: 200 -------LGRLMTLYLF--ANNLSALPTEALAPLRA 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 12/148 (8%)

Query: 103 NDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPS-S 157
             +  V         +L  L L    L  +    F+G+  L+ L +    ++  +LP  +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALPDDT 148

Query: 158 LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLD 214
              L NL  L LH   R   +P      L  L+ L L ++ V+ +   +F  L  L  L 
Sbjct: 149 FRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 215 LTDCDDLELIPRGVLSRLRKLEELYMSR 242
           L    +L  +P   L+ LR L+ L ++ 
Sbjct: 208 LFAN-NLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 21/140 (15%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IR 150
           L  + L    + E+   L      LQ L LQ+N+L  +PD  F+ + +L  L + G  I 
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 151 GFSLPS-SLSFLINLRTLSLHDCRRFGDLPLIGE-----LSLLEILDLSKSDVSEIPIS- 203
             S+P  +   L +L  L LH  R    +  +       L  L  L L  +++S +P   
Sbjct: 167 --SVPERAFRGLHSLDRLLLHQNR----VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 204 FGRLSHLRLLDLT----DCD 219
              L  L+ L L      CD
Sbjct: 221 LAPLRALQYLRLNDNPWVCD 240

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 153 SLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLSH 209
           ++P  +      + + LH  R    +P         L IL L  + ++ I   +F  L+ 
Sbjct: 25  AVPVGIP--AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 210 LRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR----SFHHWQFEG-----EEDSSSNA- 259
           L  LDL+D   L  +       L +L  L++ R          F G           NA 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 260 KFIELGSLSRLTSL-HIHIPNGKIMS-SDMSFQNLTS 294
           + +   +   L +L H+ +   +I S  + +F+ L S
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 23/214 (10%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IR 150
           L+ + L  N I             L+ L+  E  L  +       +  LK L++    I 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 151 GFSLPSSLSFLINLRTLSLHDCRRFGDLP------LIGELSLLEILDLSKSDVSEIPISF 204
              LP+  S L NL  + L        +       L     +   LD+S + +  I    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264
            +   L  L L    +   I +  L  L  L    +                 N +  E 
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK--------DERNLEIFEP 252

Query: 265 GSLSRLTSLHIHI----PNGKIMSSDMSFQNLTS 294
             +  L  + I               + F  L +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 19/206 (9%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQ--GMKDLKVLDMGGIRGF 152
           L  ++L  N       ++  P L  L L  N+L       +   G   L+ LD+      
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 153 SLPSSLSFLINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSH 209
            + ++   L  L+ L        R  +      L  L  LD+S ++        F  L+ 
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 210 LRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSR 269
           L  L +      +     V +    L  L +S+     Q E               +L R
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC----QLEQISWGV-------FDTLHR 498

Query: 270 LTSLHIHIPNGKIMSSDMS-FQNLTS 294
           L  L++   +  ++  D S +  L S
Sbjct: 499 LQLLNMS--HNNLLFLDSSHYNQLYS 522

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 42/210 (20%), Positives = 72/210 (34%), Gaps = 18/210 (8%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
             +   +++ +SL    I  + D  +  K Q+L +    L   P      +  LK L + 
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLT 336

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCR--RFGDLPLIG-ELSLLEILDLSKSDVSEIPISF 204
             +G S+      L +L  L L        G         + L  LDLS +    +  +F
Sbjct: 337 MNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264
             L  L+ LD        +        L KL  L +S +      + + D          
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT----NTKIDFDGI-------F 444

Query: 265 GSLSRLTSLHIHIPNGKIMSSDMSFQNLTS 294
             L+ L +L +   + K  +    F N T+
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 11/173 (6%)

Query: 92  FEDLTGISLMFNDIHEVPDE--LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG- 148
                 I L FN +  +         +LQ L L    +  I D+ + G+  L  L + G 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 149 -IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI--S 203
            I+ FS P S S L +L  L   +  +   L    IG+L  L+ L+++ + +    +   
Sbjct: 91  PIQSFS-PGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSS 256
           F  L++L  +DL+    ++ I    L  LR+  ++ +S        +  +D +
Sbjct: 149 FSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSSLSFLINLRTLSLHD 171
              L  L L +  L  I    F  +  L++L+M    +      S  + L +L TL    
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSF 530

Query: 172 CRRFGDLP--LIGELSLLEILDLS 193
             R       L      L   +L+
Sbjct: 531 N-RIETSKGILQHFPKSLAFFNLT 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 31/196 (15%)

Query: 94  DLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
             T I  + N I  +   +    KLQ +    +              +            
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN--- 482

Query: 153 SLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLS----------KSDVSEIP 201
               S S L +L  + L++C     LP  + +L  L+ L+++          K+D + + 
Sbjct: 483 -EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR-SFHHWQFEGEEDSSSNAK 260
                   +++  +   +  E      L ++ KL  L        H              
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-------------- 587

Query: 261 FIELGSLSRLTSLHIH 276
               G+  +LT L + 
Sbjct: 588 LEAFGTNVKLTDLKLD 603

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 9e-16
 Identities = 27/242 (11%), Positives = 76/242 (31%), Gaps = 34/242 (14%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDELE---CPKLQALLLQENSLLVIPDRFFQGMKDLKV 143
              +    +    + +N++ E P         KL  L    N +  +    F     L  
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTD 599

Query: 144 LDMGGIRGFSLPSSL-SFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSE 199
           L +   +   +P    +F   +  L      +   +P       + ++  +D S + +  
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 200 IP------ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253
                   +   +  +   + L+   +++  P  + +    +  + +S +          
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN----LMTSIP 713

Query: 254 DSSSNAKFIELGSLSRLTSLHIH------IPNGKIMSS-------DMSFQNLTSFSITIG 300
           ++S   K     +   LT++ +       + +    ++       D+S+   +SF     
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 301 DL 302
           + 
Sbjct: 774 NS 775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 9e-15
 Identities = 23/184 (12%), Positives = 47/184 (25%), Gaps = 26/184 (14%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDE-------LECPKLQALLLQENSLLVIPDRF 134
            + +  +      +  +   +N I              +      + L  N +   P   
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 135 FQGMKDLKVLDMGG--------IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP---LIGE 183
           F     +  + +                  +      L T+ L   +    L        
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATT 751

Query: 184 LSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDL------ELIPRGVLSRLRKLEE 237
           L  L  +D+S +  S  P      S L+   +    D          P G ++    L +
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQ 810

Query: 238 LYMS 241
           L + 
Sbjct: 811 LQIG 814

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDM 146
            +I +   L  I    +        ++    +             +  +  +KDL  +++
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 147 GGIRGF-SLPSSLSFLINLRTLSLHDCR---------RFGDLP-LIGELSLLEILDLSKS 195
                   LP  L  L  L++L++   R          +  L         ++I  +  +
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 196 DVSEIPIS--FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           ++ E P S    ++  L LLD      +  +         KL +L +  
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHN-KVRHLE--AFGTNVKLTDLKLDY 604

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 19/171 (11%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDEL---------ECPKLQALLLQENSLLVIPDRF-FQ 136
                   ++ I L  N +  +P+               L  + L+ N L  + D F   
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

Query: 137 GMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL------HDCRRFGDLP-LIGELSLLEI 189
            +  L  +D+      S P+       L+   +         R     P  I     L  
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 190 LDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240
           L +  +D+ ++         L +LD+ D  ++ +    V   +     + +
Sbjct: 811 LQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 43/244 (17%)

Query: 88  SINKFEDLTGISLMFNDIH-EVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLD 145
            ++    +TG+SL        VPD + +  +L+ L    +S  V    F        + +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 146 MGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDV------ 197
                IR       L +   L    L         P +  +     + L  + +      
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDL-LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 198 -SEIPISFGRLSHLRLLDLTDCDDLELIPR------------------GVLSRLRKLEEL 238
            + I  +  RL+ L+++   +                              S L+ L ++
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 239 YMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSIT 298
            +     +     +           L  L  L SL+I     + +S+     + T  +  
Sbjct: 497 ELY----NCPNMTQLPD-------FLYDLPELQSLNIA--CNRGISAAQLKADWTRLADD 543

Query: 299 IGDL 302
               
Sbjct: 544 EDTG 547

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 15/157 (9%)

Query: 71  SKNKF-MIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELEC---PKLQALLLQENS 126
           S N    I          +      LT I L FN +  + D+      P L  + +  N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 127 LLVIPDRFFQGMKDLKVLDMGGIRGFS-------LPSSLSFLINLRTLSLHDCRRFGDLP 179
               P +       LK   +   R           P+ ++   +L  L +        + 
Sbjct: 765 FSSFPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVD 822

Query: 180 LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDL 215
                  L ILD++ +    I + S        +  L
Sbjct: 823 E-KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 31/211 (14%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           L  + L  N I ++          L  L L +N L VIP   F+ +  L+ L +      
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

Query: 153 SLPS-SLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSEIPISFGRLS 208
           S+PS + + + +L  L L + ++   +      G L  L+ L+L   ++ ++P +   L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMP-NLTPLV 218

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS----RSFHHWQFEGEEDSSSNAKFIEL 264
            L  L+++       I  G    L  L++L++            F+G             
Sbjct: 219 GLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG------------- 264

Query: 265 GSLSRLTSLHIHIPNGKIMS-SDMSFQNLTS 294
             L+ L  L++   +  + S     F  L  
Sbjct: 265 --LASLVELNLA--HNNLSSLPHDLFTPLRY 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.5 bits (191), Expect = 9e-16
 Identities = 53/218 (24%), Positives = 79/218 (36%), Gaps = 42/218 (19%)

Query: 92  FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--I 149
               + +      + EVP  +     + L L EN++ +I    F+ +  L+VL +G   I
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 150 RGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGE-----LSLLEILDLSKSDVSEIPI-S 203
           R      + + L +L TL L D      L +I       LS L  L L  + +  IP  +
Sbjct: 112 RQIE-VGAFNGLASLNTLELFDNW----LTVIPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR-SFHHWQFEGEEDSSSNAKFI 262
           F R+  L  LDL +   LE I  G    L  L+ L +   +                   
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-------------- 212

Query: 263 ELGSLSRLTSLHIH------IPNGKIMSSDMSFQNLTS 294
            L  L  L  L +       I  G       SF  L+S
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPG-------SFHGLSS 243

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 12/98 (12%)

Query: 88  SINKFEDLTG---ISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
            +     L G   + +  N   E+          L+ L +  + + +I    F G+  L 
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 143 VLDMGGIRGFSLPSS-LSFLINLRTLSLH------DCR 173
            L++      SLP    + L  L  L LH      DC 
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGF 152
           L  ++L   +I ++P+      L+ L +  N    I    F G+  LK L +    +   
Sbjct: 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 153 SLPSSLSFLINLRTLSLHDCR-------RFGDLPLIGELSL 186
              ++   L +L  L+L            F  L  + EL L
Sbjct: 258 E-RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 31/214 (14%)

Query: 95  LTGISLMFNDIHEVPDELE----CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG-- 148
           L  + L  +DI               LQ+L L  N  L +    F+    L++LD+    
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 149 IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI---- 202
           ++     S    L  L+ L+L            L   L  L+ L+L  +   +  I    
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 203 SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA-KF 261
           S   L  L +L L+ C DL  I +   + L+ +  + +               S N    
Sbjct: 471 SLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL---------------SHNRLTS 514

Query: 262 IELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTS 294
             + +LS L  +++++ +  I     S    L+ 
Sbjct: 515 SSIEALSHLKGIYLNLASNHISIILPSLLPILSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 10/159 (6%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG- 148
                 +   FN +  + +        L  L L    +  I +  FQ    L  L +   
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 149 -IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SF 204
            +   +  ++LS    L+ L          +    +     LE L L  + +S I +   
Sbjct: 92  PLIFMA-ETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRS 243
                L++LD  +   +  + +  +S L++   L ++ +
Sbjct: 150 FPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 24/222 (10%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IR 150
           L  + L  N +  + +        L+ L   +  +  I        K L+ L +G   I 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 151 GFSLPSSLSFLINLRTLSLHDCR----RFGDLPLIGELSLLEILDLSKSDVSEIPISFGR 206
              LP        L+ L   +         D+  + + + L  L+L+ +D++ I      
Sbjct: 143 SIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAFD 200

Query: 207 LSHLRLLDLTDCDDLELIPRG-VLSRLRKLEELYMS----RSFHHWQFEGEEDS------ 255
            +  + L+     +L +I +G   S ++ L                 FEG  +       
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 256 -SSNA-KFIELGSLSRLTSLH-IHIPNGKIMSSDMSFQNLTS 294
              +    I   +    + L  + +    +         L++
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST 302

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 22/218 (10%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDE----LECPKLQALLLQENSLLVIPDRFFQGMKD-- 140
           P          ++        V  +         L     ++     I    F+G+ +  
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 141 LKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS 198
           ++ +++     F++  ++      L+ L L       +LP  +  LS L+ L LS +   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFE 314

Query: 199 EIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSS 257
            +  IS      L  L +        +  G L  L  L EL +S              +S
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI---------ETS 365

Query: 258 NAKFIELGSLSRLTSLHIHIPNGKIMS-SDMSFQNLTS 294
           +   ++L +LS L SL++     + +S    +F+    
Sbjct: 366 DCCNLQLRNLSHLQSLNLS--YNEPLSLKTEAFKECPQ 401

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 13/157 (8%)

Query: 95  LTGISLMFNDIHEVPDE---LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--I 149
           L  + L F  +     +        L+ L L  + L +  ++ F G+  L+ L++ G   
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 150 RGFSL--PSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-F 204
              ++   +SL  L  L  L L  C     +       L ++  +DLS + ++   I   
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
             L  +  L+L   + + +I   +L  L +   + + 
Sbjct: 521 SHLKGIY-LNLAS-NHISIILPSLLPILSQQRTINLR 555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 6e-16
 Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLD 145
            S       T I  + N+I  V   +    KL+   +  +  +          ++ +   
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

Query: 146 MGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSK---------S 195
                  +       L +L  + +++C     LP  +  L  +++++++           
Sbjct: 237 QYK----TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 196 DVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDS 255
           D  +          ++++ +   +         L +++KL  L       + Q EG+   
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL----YNQLEGKLP- 347

Query: 256 SSNAKFIELGSLSRLTSLHI 275
                    GS  +L SL++
Sbjct: 348 -------AFGSEIKLASLNL 360

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 8e-16
 Identities = 34/264 (12%), Positives = 86/264 (32%), Gaps = 41/264 (15%)

Query: 71  SKNKF--MIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELE---CPKLQALLLQEN 125
           + N+     +   + +        E +  I + +N++   P E       KL  L    N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 126 SLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSSL-SFLINLRTLSLHDCRRFGDLP--- 179
            L      F      L  L++    I    +P++   F   +  LS    +    +P   
Sbjct: 341 QLEGKLPAFGS-EIKLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNK-LKYIPNIF 396

Query: 180 LIGELSLLEILDLS--------KSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSR 231
               +S++  +D S          +   +  +  +  ++  ++L++   +   P+ + S 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFST 455

Query: 232 LRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH------IPNGKIMSS 285
              L  + +  +           +S   +     +   LTS+ +       + +    ++
Sbjct: 456 GSPLSSINLMGN----MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 286 -------DMSFQNLTSFSITIGDL 302
                  D+S+ + + F     + 
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPLNS 535

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 42/262 (16%), Positives = 82/262 (31%), Gaps = 53/262 (20%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQG-MKDLKV 143
           P+      L  ++L +N I E+P        +++ L    N L  IP+ F    +  +  
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 144 LDMGG--IRGF------SLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLS 193
           +D     I          L  +    IN+ +++L + +     P  L    S L  ++L 
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLM 465

Query: 194 --------KSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGV-LSRLRKLEELYMS--- 241
                   K+ + +   +F     L  +DL     L  +      + L  L  + +S   
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 242 -----------RSFHHWQFEGEEDSSSNAKF----IELGSLSRLTSLHI------HIPNG 280
                       +   +    + D+  N         +     LT L I       +   
Sbjct: 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584

Query: 281 KIMSS----DMSFQNLTSFSIT 298
            I  +    D+      S  ++
Sbjct: 585 -ITPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 23/212 (10%), Positives = 67/212 (31%), Gaps = 34/212 (16%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
            ++         L+ + I+  P +    K   + L++  +  + +               
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI------------- 195

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIPISFGR 206
                 +  ++  L  LR   + +     +      E    E     K+      + +  
Sbjct: 196 ----TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDN 247

Query: 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR-SFHHWQFEGEEDSSSNAKFIELG 265
           L  L  +++ +C +L  +P   L  L +++ + ++          GE+         +  
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS----GEQLKDDWQALADAP 302

Query: 266 SLSRLTSLHI---HIPNGKIMSSDMSFQNLTS 294
              ++  ++I   ++    + +   S Q +  
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVET---SLQKMKK 331

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 23/220 (10%), Positives = 65/220 (29%), Gaps = 40/220 (18%)

Query: 87  PSINKFEDLTGISLM-FNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVL 144
              +  +DLT + +    ++ ++P  L   P++Q + +  N  +                
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ------------ 290

Query: 145 DMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL---IGELSLLEILDLSKSDVSEIP 201
                  +   +       ++ + +         P+   + ++  L +L+   + +    
Sbjct: 291 ---LKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR-SFHHWQFEGEEDSSSNAK 260
            +FG    L  L+L     +  IP        ++E L  +                    
Sbjct: 347 PAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKL-----------KYIPN 394

Query: 261 FIELGSLSRLTSLHI------HIPNGKIMSSDMSFQNLTS 294
             +  S+S ++++         +        D +     +
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 24/175 (13%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELE---------CPKLQALLLQENSLLVIPDRFFQG- 137
             +    L+ I+LM N + E+P                L ++ L+ N L  + D F    
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 138 MKDLKVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRF------GDLP-LIGELSLLE 188
           +  L  +D+          P+       L+   + + R         + P  I     L 
Sbjct: 512 LPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 189 ILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRS 243
            L +  +D+ ++        ++ +LD+ D  ++ +    V   + +     +   
Sbjct: 570 QLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYI-EAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 25/210 (11%), Positives = 60/210 (28%), Gaps = 28/210 (13%)

Query: 95  LTGISLMFNDIH-EVPDEL-ECPKLQALLLQENSL-----LVIPDRFFQGMKDLKVLDMG 147
           +TG+SL        VPD + +  +L+ L L  +       L  P      M D +   M 
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 148 GIRGFSLPSSLSFLI--NLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISF 204
                +           +L    ++   +   +            +    ++++ +  + 
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264
            RL+ LR   + +   +              E     ++                  ++ 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENIC-EAWENENSEYAQQYKTED----------------LKW 245

Query: 265 GSLSRLTSLHIHIPNGKIMSSDMSFQNLTS 294
            +L  LT + ++     +       + L  
Sbjct: 246 DNLKDLTDVEVYN-CPNLTKLPTFLKALPE 274

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 23/173 (13%)

Query: 71  SKNKF-MIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELE---CPKLQALLLQENS 126
             N    I       +  +      LT I L FN + ++ D+      P L  + L  NS
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 127 LLVIPDRFFQGMKDLKVLDMGGIRGFS-------LPSSLSFLINLRTLSLHDCRRFGDLP 179
               P +       LK   +   R           P  ++   +L  L +        + 
Sbjct: 525 FSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVN 582

Query: 180 LIGELSLLEILDLSKSDVSEIPISF---------GRLSHLRLLDLTDCDDLEL 223
                  + +LD+  +    I +S+           L + +  D+  CD L++
Sbjct: 583 E-KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 30/147 (20%)

Query: 163 NLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK-----SDVSEIPISFGRLSHLRLLDLT 216
            +  LSL      G +P  IG+L+ LE+L L       ++    P               
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 217 DCDDLELIPRGV-LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHI 275
                +             L +  +               +S+ +   +   SR+T    
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCI---------------NSDPQQKSIKKSSRITLKDT 186

Query: 276 HIPNGKIMSSDMSFQNLTSFSITIGDL 302
            I             N+T  S  +  L
Sbjct: 187 QI--------GQLSNNITFVSKAVMRL 205

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 19/230 (8%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVL 144
            +  ++  LT + + FN I ++  EL  + P L+ L LQ N L  + D+ F    +L  L
Sbjct: 43  ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102

Query: 145 DMGGIRGFSL-PSSLSFLINLRTLSLHDCR-RFGDLPLIGELSLLEILDLSK---SDVSE 199
            +       +  +      NL TL L         L    +L  L+ L LS      +  
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 200 IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA 259
             +     S L+ L+L+    ++    G    + +L  L+++              S   
Sbjct: 163 EELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQ--------LGPSLTE 213

Query: 260 KFIELGSLSRLTSLHIHIPNGKIMS-SDMSFQNLTSFSITIGDLAAGFIS 308
           K     + + + +L +   N ++ + S+ +F  L   ++T+ DL+   ++
Sbjct: 214 KLCLELANTSIRNLSLS--NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 21/198 (10%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGF 152
                     + +VPD+L    +  L L  N L  +P   F     L  LD+G   I   
Sbjct: 6   HEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 153 SLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEI-PISFGRLSH 209
             P     L  L+ L+L        L        + L  L L  + + +I    F +  +
Sbjct: 65  E-PELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 210 LRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR----SFHHWQFEGEEDS-------SSN 258
           L  LDL+    L     G   +L  L+EL +S     +    + +   +S       SSN
Sbjct: 123 LITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 259 A-KFIELGSLSRLTSLHI 275
             K    G    +  L  
Sbjct: 182 QIKEFSPGCFHAIGRLFG 199

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 30/205 (14%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELE---CPKLQALLLQENSLLVIPDRFFQGMKDLKVL 144
           + +    L  + L  N+I +     E      +  + L  N  L +    F  +  L+ L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 145 DMGG--IRGF-SLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLS------ 193
            +    ++   S PS    L NL  L L +     ++   ++  L  LEILDL       
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 194 ---KSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE 250
               ++          LSHL +L+L      + IP  V   L +L+ + +  +       
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN----NLN 573

Query: 251 GEEDSSSNAKFIELGSLSRLTSLHI 275
               S          +   L SL++
Sbjct: 574 TLPASV-------FNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 27/228 (11%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IR 150
           L  ++L  N++ ++ D+    C  L  L L  NS+  I +  F   K+L  LD+    + 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 151 GFSLPSSLSFLINLRTLSLHDCRRFGDLPL----IGELSLLEILDLSKSDVSEI-PISFG 205
                 +   L NL+ L L +  +   L      I   S L+ L+LS + + E  P  F 
Sbjct: 135 STK-LGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 206 RLSHLRLLDLTDCDDLELIPR--GVLSRLRKLEELYMS----RSFHHWQFEGEEDS---- 255
            +  L  L L +      +     +      +  L +S     +  +  F G + +    
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 256 ---SSNA-KFIELGSLSRLTSLH-IHIPNGKIMS-SDMSFQNLTSFSI 297
              S N    +   S + L  L    +    I      S   L +   
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 40/231 (17%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQEN---------SLLVIPDRFFQ 136
           S      L    L +N+I  +          ++ L L+ +         SL  I D  FQ
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 137 GMKDLKVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRR---------FGDLPLIGELS 185
            +K L+ L+M    I G    +  + LINL+ LSL +            F  L      S
Sbjct: 327 WLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH----S 381

Query: 186 LLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSF 244
            L IL+L+K+ +S+I   +F  L HL +LDL   +  + +       L  + E+Y+S + 
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN- 440

Query: 245 HHWQFEGEEDSSSNAKFIELGSLSRLTSLHI-HIPNGKIMSSDMSFQNLTS 294
              ++     +S          +  L  L +  +    + SS   FQ L +
Sbjct: 441 ---KYLQLTRNS-------FALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELE----CPKLQALLLQENSLLVIPDRFFQGMKDLKV 143
           S      L  + L    +  V            L  L L  N++  I D   +G++ L++
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 144 LDMGGIR---------GFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDL 192
           LD+                    L  L +L  L+L     F ++P  +  +L  L+I+DL
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDL 567

Query: 193 SKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
             ++++ +P S F     L+ L+L       +  +      R L EL M 
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 28/140 (20%)

Query: 162 INLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDD 220
           ++          +   +P     + + +L+L+ + +  +   +F R S L  LD+     
Sbjct: 4   VSHEVADCSH-LKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-T 60

Query: 221 LELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHI----- 275
           +  +   +  +L  L+ L +  +    +     D +           + LT LH+     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHN----ELSQLSDKT-------FAFCTNLTELHLMSNSI 109

Query: 276 -HIPNGKIMSSDMSFQNLTS 294
             I N         F    +
Sbjct: 110 QKIKNN-------PFVKQKN 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            + D  +  + E +T + +    +  +        L+ L L  N +  I       +  L
Sbjct: 33  SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKL 90

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
             L +G  +  +  S+L  L NLR L L++     D+  +  L+ +  L+L  +      
Sbjct: 91  TNLYIGTNK-ITDISALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSDL 148

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSN--A 259
                ++ L  L +T+   ++ +    ++ L  L  L +               + N   
Sbjct: 149 SPLSNMTGLNYLTVTES-KVKDVT--PIANLTDLYSLSL---------------NYNQIE 190

Query: 260 KFIELGSLSRLTSLHIH 276
               L SL+ L     +
Sbjct: 191 DISPLASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++     I    +L  ++L  N I ++       KL  L +  N +  I     Q + +L
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNL 112

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
           + L +      S  S L+ L  + +L+L       DL  +  ++ L  L +++S V ++ 
Sbjct: 113 RELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKF 261
                L+ L  L L      ++ P   L+ L  L                    +     
Sbjct: 172 -PIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAY-------------VNQITDI 214

Query: 262 IELGSLSRLTSLHIH 276
             + +++RL SL I 
Sbjct: 215 TPVANMTRLNSLKIG 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 33/197 (16%), Positives = 75/197 (38%), Gaps = 24/197 (12%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            +          +     L    + +V  + E   +  L++    +  I     + + +L
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNL 68

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
           + L++ G +  +  S LS L+ L  L +    +  D+  +  L+ L  L L++ ++S+I 
Sbjct: 69  EYLNLNGNQ-ITDISPLSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISDIS 126

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSN--A 259
                L+ +  L+L    +L  +    LS +  L  L +               + +   
Sbjct: 127 -PLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTV---------------TESKVK 168

Query: 260 KFIELGSLSRLTSLHIH 276
               + +L+ L SL ++
Sbjct: 169 DVTPIANLTDLYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 7e-13
 Identities = 29/160 (18%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           ++D   +     L   +   N I ++       +L +L +  N +  +       +  L 
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS--PLANLSQLT 246

Query: 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI 202
            L++G     S  +++  L  L+ L++   +   D+ ++  LS L  L L+ + +    +
Sbjct: 247 WLEIGT-NQISDINAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 203 S-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
              G L++L  L L+     ++ P   L+ L K++    +
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++KD   I    DL  +SL +N I ++        L       N +  I       M  L
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
             L +G  +  +  S L+ L  L  L +   +   D+  + +L+ L++L++  + +S+I 
Sbjct: 224 NSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDIS 281

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
                LS L  L L +   L      V+  L  L  L++S+
Sbjct: 282 -VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 30/183 (16%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154
              ++ +   I+++  + +  +    +LQ+ S+  +     + ++ +  L + G    + 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG-EKVAS 58

Query: 155 PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD 214
              + +L NL  L+L+   +  D+  +  L  L  L +  + +++I  +   L++LR L 
Sbjct: 59  IQGIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116

Query: 215 LTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE-LGSLSRLTSL 273
           L + +  ++ P   L+ L K+  L +              ++ N   +  L +++ L  L
Sbjct: 117 LNEDNISDISP---LANLTKMYSLNLG-------------ANHNLSDLSPLSNMTGLNYL 160

Query: 274 HIH 276
            + 
Sbjct: 161 TVT 163

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 9/139 (6%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++ D   +     L  + +  N I ++       +L  L +  N +  I     + +  L
Sbjct: 210 QITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKL 267

Query: 142 KVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCR-RFGDLPLIGELSLLEILDLSKSDVS 198
           K+L++G   I      S L+ L  L +L L++ +    D+ +IG L+ L  L LS++ ++
Sbjct: 268 KMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 199 EIPISFGRLSHLRLLDLTD 217
           +I      LS +   D  +
Sbjct: 325 DIR-PLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           + D  ++     L  +++  N I ++       +L +L L  N L         G+ +L 
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 143 VLDMGG--IRGFSLPSSLSFLINLRTLSLHDCR 173
            L +    I        L+ L  + +    +  
Sbjct: 315 TLFLSQNHITDI---RPLASLSKMDSADFANQV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 46/211 (21%), Positives = 75/211 (35%), Gaps = 19/211 (9%)

Query: 90  NKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSL--LVIPDRFFQGMKDLKVLDMG 147
            K + L  ++   N       E++ P L+ L L  N L       +   G   LK LD+ 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVSEI-PISF 204
                ++ S+   L  L  L        +  +  +   L  L  LD+S +         F
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264
             LS L +L +      E     + + LR L  L +S+     Q E    ++        
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----QLEQLSPTA-------F 490

Query: 265 GSLSRLTSLHIHIPNGKIMSSD-MSFQNLTS 294
            SLS L  L++   +    S D   ++ L S
Sbjct: 491 NSLSSLQVLNMS--HNNFFSLDTFPYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 9/212 (4%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IR 150
           L+ + L  N I  +          LQ L+  E +L  + +     +K LK L++    I+
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 151 GFSLPSSLSFLINLRTLSLHDCR----RFGDLPLIGELSLLEI-LDLSKSDVSEIPISFG 205
            F LP   S L NL  L L   +       DL ++ ++ LL + LDLS + ++ I     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG 265
           +   L  L L +  D   + +  +  L  LE   +       +   E+   S  + +   
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 266 SLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSI 297
           ++      ++      I+       N++SFS+
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 19/214 (8%)

Query: 92  FEDLTGISLMFNDIHEVPDE--LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG- 148
                 + L FN +  +        P+LQ L L    +  I D  +Q +  L  L + G 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 149 -IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI--S 203
            I+  +   + S L +L+ L   +      L    IG L  L+ L+++ + +    +   
Sbjct: 87  PIQSLA-LGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE 263
           F  L++L  LDL+    ++ I    L  L ++  L +S           +  +       
Sbjct: 145 FSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA------- 196

Query: 264 LGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSI 297
                RL  L +      +       Q L    +
Sbjct: 197 -FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 42/210 (20%), Positives = 64/210 (30%), Gaps = 18/210 (8%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
             N   +++  SL+   I  V D       Q L L        P    + +K L      
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCR--RFGDLP-LIGELSLLEILDLSKSDVSEIPISF 204
           G        S   L +L  L L        G         + L+ LDLS + V  +  +F
Sbjct: 337 G----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264
             L  L  LD    +  ++    V   LR L  L +S +          +          
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT----HTRVAFNGI-------F 441

Query: 265 GSLSRLTSLHIHIPNGKIMSSDMSFQNLTS 294
             LS L  L +   + +       F  L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/252 (13%), Positives = 67/252 (26%), Gaps = 37/252 (14%)

Query: 71  SKNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALL----LQE 124
           + N          K     +   +L  + L  N I  +         ++  L     L  
Sbjct: 132 AHNLIQ-----SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 125 NSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFG------ 176
           N +  I    F+ ++ L  L +         + + +  L  L    L             
Sbjct: 187 NPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 177 -DLPLIGELSLLEILDLSKSDVS----EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSR 231
            D   +  L  L I +   + +     +I   F  L+++    L       +      S 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSY 302

Query: 232 LRKLEELYMSR----SFHHWQFEGEED-SSSNAKFIELGSLSRLTSLHI----HIPNGKI 282
               + L +       F   + +  +  + ++ K     S   L SL             
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 283 MSSDMSFQNLTS 294
                S    TS
Sbjct: 363 GCCSQSDFGTTS 374

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 15/142 (10%)

Query: 86  WPSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKV 143
                +  +LT + L    + ++          LQ L +  N+   +    ++ +  L+V
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 144 LDMGG--IRGFSLPSSLSFLINLRTLSLH------DCRRFGDLPLIGELSLLEILDLSKS 195
           LD     I          F  +L  L+L        C        +  +     L +   
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC---EHQSFLQWIKDQRQLLVEVE 579

Query: 196 DVS-EIPISFGRLSHLRLLDLT 216
            +    P     +  +  L++T
Sbjct: 580 RMECATPSDKQGMP-VLSLNIT 600

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 20/209 (9%)

Query: 94  DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
               + L FN +  +        P+LQ L L    +  I D  +Q +  L  L + G   
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 152 FSLPSSL-SFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS--FGR 206
            SL     S L +L+ L   +      L    IG L  L+ L+++ + +    +   F  
Sbjct: 89  QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS 266
           L++L  LDL+    ++ I    L  L ++  L +S                   FI+ G+
Sbjct: 148 LTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM----------NFIQPGA 196

Query: 267 LSRLTSLHIHIPNGKIMS-SDMSFQNLTS 294
              +    + +   ++ S  D  F  LTS
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTS 225

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 8e-15
 Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 41/221 (18%)

Query: 85  DWPSINKFEDLTGISLMFNDIH---EVPDELECPKLQALLLQENSL---LVIPDRFFQGM 138
              S+     L  +++  N +    +V   L+   L+ L L  NS+    V+      G 
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 139 KDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVS 198
            +LK L + G +  S    +S  +NL  L +        +P +G+ S L+ LD+S + +S
Sbjct: 178 GELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236

Query: 199 -EIPISFGRLSHLRLLDLTDCD--------------DLEL--------IPRGVLSRLRKL 235
            +   +    + L+LL+++                  L L        IP  +      L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 236 EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH 276
             L +S +     F G             GS S L SL + 
Sbjct: 297 TGLDLSGN----HFYGAVPPF-------FGSCSLLESLALS 326

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 4e-13
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 153 SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVS-EIP--ISFGRLSH 209
           ++ SSL  L  L +L L +    G +      + L  LDLS++ +S  +    S G  S 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 210 LRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSR 269
           L+ L+++              +L  LE L +S +       G         ++       
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN----SISGANVVG----WVLSDGCGE 179

Query: 270 LTSLHI 275
           L  L I
Sbjct: 180 LKHLAI 185

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 13/162 (8%)

Query: 88  SINKFEDLTGISLMFNDIH-EVPDELECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLD 145
            +++  +L  + +  N+    +P   +C  LQ L +  N L             +LK+L+
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLN 253

Query: 146 MGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVS-EI 200
           +      G  +P     L +L+ LSL + +  G++P  L G    L  LDLS +     +
Sbjct: 254 ISSNQFVG-PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 201 PISFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMS 241
           P  FG  S L  L L+   +    +P   L ++R L+ L +S
Sbjct: 311 PPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLS 351

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 57/250 (22%), Positives = 86/250 (34%), Gaps = 55/250 (22%)

Query: 87  PSINKFEDLTGISLMFNDIH-EVPDEL--ECPKLQALLLQENSLL-VIPDRFFQGMKDLK 142
           P       L  ++L  N+   E+P +   +   L+ L L  N     +P+        L 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 143 VLDMGG--IRGFSLPSSL--SFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDV 197
            LD+      G  +  +L  +    L+ L L +    G +P  +   S L  L LS + +
Sbjct: 372 TLDLSSNNFSG-PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 198 S-EIPISFGRLSHLRLLDL-------------TDCDDLEL-----------IPRGVLSRL 232
           S  IP S G LS LR L L                  LE            IP G LS  
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNC 489

Query: 233 RKLEELYMSRSFHHWQFEGEEDSSSNAKFI--ELGSLSRLTSLHIHIPN---GKIMSSDM 287
             L  + +S +    +  GE         I   +G L  L  L +   N   G I +   
Sbjct: 490 TNLNWISLSNN----RLTGE---------IPKWIGRLENLAILKLSN-NSFSGNIPAELG 535

Query: 288 SFQNLTSFSI 297
             ++L    +
Sbjct: 536 DCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 29/193 (15%)

Query: 94  DLTGISLMFNDIHEVPDELECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIR-- 150
           DL+   L           L    L++L L  + +   +    F+    L  LD+      
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLS 113

Query: 151 -GFSLPSSLSFLINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVS-EIPISF-- 204
              +  +SL     L+ L++        G +    +L+ LE+LDLS + +S    + +  
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 205 -GRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI 262
                 L+ L ++    +   +    +SR   LE L +S +     F             
Sbjct: 174 SDGCGELKHLAISGN-KISGDVD---VSRCVNLEFLDVSSN----NFSTG--------IP 217

Query: 263 ELGSLSRLTSLHI 275
            LG  S L  L I
Sbjct: 218 FLGDCSALQHLDI 230

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 37/179 (20%)

Query: 130 IPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL---IGELSL 186
           +       +  L+ L +         S      +L +L L      G +     +G  S 
Sbjct: 69  VSSSLLS-LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 187 LEILDLSKSDVS-EIPIS-FGRLSHLRLLDLTDCDDLELIPRGV--LSRLRKLEELYMSR 242
           L+ L++S + +     +S   +L+ L +LDL+          G        +L+ L +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH-------IPNGKIMSSDMSFQNLTS 294
           +    +  G+         +++     L  L +        IP            + ++
Sbjct: 188 N----KISGD---------VDVSRCVNLEFLDVSSNNFSTGIP---------FLGDCSA 224

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 46/226 (20%)

Query: 87  PSINKFEDLTGISLMFNDIH-EVPDEL-ECPKLQALLLQENSLL-VIPDRFFQGMKDLKV 143
             ++   +L  ISL  N +  E+P  +     L  L L  NS    IP       + L  
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIW 542

Query: 144 LDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSKSDVS-- 198
           LD+      G ++P+++       +  +      G   + I    + +    + + +   
Sbjct: 543 LDLNTNLFNG-TIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 199 -EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSS 257
                   RLS     ++T                  +  L MS +       G      
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYN----MLSGY----- 647

Query: 258 NAKFI--ELGSLSRLTSLHI-------HIPNGKIMSSDMSFQNLTS 294
               I  E+GS+  L  L++        IP+           +L  
Sbjct: 648 ----IPKEIGSMPYLFILNLGHNDISGSIPD--------EVGDLRG 681

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 37/180 (20%), Positives = 54/180 (30%), Gaps = 51/180 (28%)

Query: 87  PSINKFEDLTGISLMFNDIH-EVPDEL-ECPKLQALLLQENSLL-VIPDRFFQGMKDLKV 143
             I + E+L  + L  N     +P EL +C  L  L L  N     IP   F+    +  
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567

Query: 144 LDMGGIRGFSL----------------------PSSLSFLINLRTLSLHDCRRFGDLPL- 180
             + G R   +                         L+ L      ++      G     
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 181 ------------------------IGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDL 215
                                   IG +  L IL+L  +D+S  IP   G L  L +LDL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 11/138 (7%)

Query: 87  PSINKFEDLTGISLMFNDIH---EVPDEL-ECPKLQALLLQENSLL-VIPDRFFQGMKDL 141
             I             N +       ++L          +             F     +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFDNNGSM 634

Query: 142 KVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSKSDVS 198
             LDM    + G  +P  +  +  L  L+L      G +P  +G+L  L ILDLS + + 
Sbjct: 635 MFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 199 -EIPISFGRLSHLRLLDL 215
             IP +   L+ L  +DL
Sbjct: 694 GRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 15/109 (13%)

Query: 190 LDLSKSDVS----EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245
           +DLS   ++     +  S   L+ L  L L++      +          L  L +SR+  
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRN-- 110

Query: 246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTS 294
                G   + +      LGS S L  L++                L S
Sbjct: 111 --SLSGPVTTLT-----SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGF 152
           L  + L  N + E+P+++    LQ L + EN +  +    F G+  + V+++G   ++  
Sbjct: 102 LERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 153 SLPS-SLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-ISFGRLSHL 210
            + + +   +  L  + + D      +P  G    L  L L  + ++++   S   L++L
Sbjct: 161 GIENGAFQGMKKLSYIRIADT-NITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNL 218

Query: 211 RLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
             L L+    +  +  G L+    L EL+++ 
Sbjct: 219 AKLGLSFN-SISAVDNGSLANTPHLRELHLNN 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 46/220 (20%)

Query: 92  FEDLTGISLMFNDIHEVPDE--LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
             D   + L  N I E+ D        L  L+L  N +  I    F  +  L+ L +   
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 150 RGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS---F 204
           +   LP  +     L+ L +H+      +   +   L+ + +++L  + +    I    F
Sbjct: 111 QLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA-KFIE 263
             +  L  + + D  ++  IP+G+      L EL++                 N    ++
Sbjct: 168 QGMKKLSYIRIADT-NITTIPQGLPP---SLTELHLDG---------------NKITKVD 208

Query: 264 LGSLSRLTSLHI---------HIPNGKIMSSDMSFQNLTS 294
             SL  L +L            + NG       S  N   
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNG-------SLANTPH 241

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 36/184 (19%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSL--LVIPDRFFQGMKDLKVLDMG 147
            + L  + +  N+I +V   +     ++  + L  N L    I +  FQGMK L  + + 
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCR-------RFGDLPLIGELSL-------------- 186
                ++P  L    +L  L L   +           L  + +L L              
Sbjct: 180 DTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 187 ----LEILDLSKSDVSEIPISFGRLSHLRLLDL-----TDCDDLELIPRGVLSRLRKLEE 237
               L  L L+ + + ++P       +++++ L     +     +  P G  ++      
Sbjct: 238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 238 LYMS 241
           + + 
Sbjct: 298 VSLF 301

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG---- 148
           L  + L FN I  V +      P L+ L L  N L+ +P       K ++V+ +      
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNIS 276

Query: 149 ---IRGFSLPSSLSFLINLRTLSLHDCR-RFGDLP--LIGELSLLEILDLS 193
                 F  P   +   +   +SL     ++ ++       + +   + L 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDM 146
                F D+  I +   D++   +++     + +  + +++  +P       + +++L++
Sbjct: 18  QYDCVFYDVH-IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 147 GG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI 202
               I       + ++   ++ L +        LP  +   + LL +L L ++D+S +P 
Sbjct: 77  NDLQIEEID-TYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 203 S-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR----SFHHWQFEG-EEDSS 256
             F     L  L +++  +LE I          L+ L +S                  + 
Sbjct: 135 GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193

Query: 257 SNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMSFQNLTS 294
           S      L     +  L     +  I          LT 
Sbjct: 194 SYNLLSTLAIPIAVEELDAS--HNSINVVRGPVNVELTI 230

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 23/167 (13%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IR 150
           LT + L  ND+  +P  +    PKL  L +  N+L  I D  FQ    L+ L +    + 
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 151 GFSL---------------PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKS 195
              L                S+L+  I +  L          +        L IL L  +
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVR-GPVNVELTILKLQHN 236

Query: 196 DVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           ++++          L  +DL+  + LE I      ++++LE LY+S 
Sbjct: 237 NLTDTA-WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 92  FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
             +LT + L  N++ +    L  P L  + L  N L  I    F  M+ L+ L +   R 
Sbjct: 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 152 FSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIPISFGRLSHL 210
            +L      +  L+ L L        +     +   LE L L  + +  +         L
Sbjct: 285 VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 341

Query: 211 RLLDLTD----CDDLELIPRGVLS 230
           + L L+     C+ L  + R V  
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVAR 365

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 10/149 (6%)

Query: 100 LMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSS 157
             F ++ +VP  L     + LLL  N +  +    F  ++ L++L++G           +
Sbjct: 11  YRFCNLTQVPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 158 LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS---FGRLSHLRL 212
              L NLR L L    +   L       L  L  L L    +S+  +    F  L  L  
Sbjct: 69  FRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 213 LDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           LDL+      L       +L  L+ +  S
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 41/206 (19%), Positives = 91/206 (44%), Gaps = 22/206 (10%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           L  ++L +N + E+        PK+  + LQ+N + +I D+ F+ ++ L+ LD+      
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL----RD 371

Query: 153 SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSL-LEILDLSKSDVSEIPIS--FGRLSH 209
           +  +++ F+ ++  + L   +    L  + +++L   ++ LS++ +  + I     R+ H
Sbjct: 372 NALTTIHFIPSIPDIFLSGNK----LVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 210 LRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSR 269
           L++L L              S    LE+L++  +     +E E              LS 
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV------FEGLSH 481

Query: 270 LTSLHIHIPNGKIMS-SDMSFQNLTS 294
           L  L+++  +  + S     F +LT+
Sbjct: 482 LQVLYLN--HNYLNSLPPGVFSHLTA 505

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 43/234 (18%), Positives = 74/234 (31%), Gaps = 18/234 (7%)

Query: 92  FEDLTGISLMFNDI-HEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG 148
            E L  + L        +  E     P L+ L L  + +  +    FQG+  L  L +  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 149 --IRGFSLPSS-LSFLINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVSEIP-- 201
             +    L       L  L  L L   +       P  G+L+ L+ +D S + +  +   
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 202 -ISFGRLSHLRLLDLTDCDDLELIPRGVLS-----RLRKLEELYMSRSFHHWQFEGE-ED 254
            +   +   L    L        +           R   LE L +S +       G   +
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 255 SSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFIS 308
           + S ++   L     +        N K    +  F  L   S+   DL+ GF+ 
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT-FAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 20/159 (12%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154
           L  + L  N +  +      P +  + L  N L+ +P           ++ +   R  +L
Sbjct: 364 LQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENL 416

Query: 155 PSSLSF--LINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSEIPIS------ 203
                   + +L+ L L+  R F          E   LE L L ++ +     +      
Sbjct: 417 DILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           F  LSHL++L L     L  +P GV S L  L  L ++ 
Sbjct: 476 FEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 184 LSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           L+  E L LS + +  +   SF  L  L+LL+L        I +     L  L  L +  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDM 146
                F D+  I +   D++   +++     + +  + +++  +P       + +++L++
Sbjct: 24  QYDCVFYDVH-IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 147 GG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI 202
               I       + ++   ++ L +        LP  +   + LL +L L ++D+S +P 
Sbjct: 83  NDLQIEEID-TYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 203 S-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR----SFHHWQFEG-EEDSS 256
             F     L  L +++  +LE I          L+ L +S                  + 
Sbjct: 141 GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199

Query: 257 SNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMSFQNLTS 294
           S      L     +  L     +  I          LT 
Sbjct: 200 SYNLLSTLAIPIAVEELDAS--HNSINVVRGPVNVELTI 236

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           LT + L  ND+  +P  +    PKL  L +  N+L  I D  FQ    L+ L +   R  
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 153 SLPSSLSFLINLRTLSLHDCR--RFGDLPLIGELSL---------------LEILDLSKS 195
            +  SL  + +L   ++             + EL                 L IL L  +
Sbjct: 185 HVDLSL--IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242

Query: 196 DVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           ++++          L  +DL+  + LE I      ++++LE LY+S 
Sbjct: 243 NLTDTA-WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 287

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 9e-14
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 92  FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
             +LT + L  N++ +    L  P L  + L  N L  I    F  M+ L+ L +   R 
Sbjct: 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 152 FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLR 211
            +L      +  L+ L L             +   LE L L  + +  +         L+
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 348

Query: 212 LLDLTD----CDDLELIPRGVLS 230
            L L+     C+ L  + R V  
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVAR 371

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 7/150 (4%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGF 152
           L  + +  N + E+P  L    L  L + +N +  +P   F G++++  ++MGG  +   
Sbjct: 104 LQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 153 SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-ISFGRLSHLR 211
                    + L  L + +  +   +P       L  L L  + +  I      R S L 
Sbjct: 163 GFEPGAFDGLKLNYLRISEA-KLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 212 LLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
            L L     + +I  G LS L  L EL++ 
Sbjct: 221 RLGLGHN-QIRMIENGSLSFLPTLRELHLD 249

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 31/212 (14%)

Query: 92  FEDLTGISLMFNDIHEVPDE--LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
             D T + L  NDI E+  +       L AL+L  N +  I ++ F  ++ L+ L +   
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 150 RGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPISFGRL 207
               +P +L    +L  L +HD  R   +P  +   L  +  +++  + +       G  
Sbjct: 113 HLVEIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 208 SHLRL--LDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA-KFIEL 264
             L+L  L +++   L  IP+ +      L EL++                 N  + IEL
Sbjct: 170 DGLKLNYLRISEA-KLTGIPKDLPE---TLNELHLDH---------------NKIQAIEL 210

Query: 265 GSLSRLTSLH-IHIPNGKIMS-SDMSFQNLTS 294
             L R + L+ + + + +I    + S   L +
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 31/217 (14%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSL--LVIPDRFFQGMKDLKVLDMG 147
              L  + +  N I +VP  +      +  + +  N L         F G+K L  L + 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRIS 180

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SF 204
             +   +P  L     L  L L   +    +    +   S L  L L  + +  I   S 
Sbjct: 181 EAKLTGIPKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS----RSFHHWQFEGEEDSSSNAK 260
             L  LR L L +   L  +P G L  L+ L+ +Y+            F           
Sbjct: 238 SFLPTLRELHLDNN-KLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV---- 291

Query: 261 FIELGSLSRLTSLHIH---IPNGKIMSSDMSFQNLTS 294
                  +    + +    +P  ++     +F+ +T 
Sbjct: 292 -----KRAYYNGISLFNNPVPYWEV--QPATFRCVTD 321

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 12/136 (8%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
            E L  + L  N I  +  E      KL  L L  N + +I +     +  L+ L +   
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 150 RGFSLPSSLSFLINLRTLSLHDCR-------RFGDLPLIGELSLLEILDLSKSDVSEIPI 202
           +   +P+ L  L  L+ + LH           F  +    + +    + L  + V    +
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 203 S---FGRLSHLRLLDL 215
               F  ++    +  
Sbjct: 312 QPATFRCVTDRLAIQF 327

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++ D   +    +LTG++L  N I ++        L  L L  N++  I      G+  L
Sbjct: 101 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSL 158

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
           + L  G     +    L+ L  L  L +    +  D+ ++ +L+ LE L  + + +S+I 
Sbjct: 159 QQLSFG--NQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDIT 215

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKF 261
              G L++L  L L     L+ I    L+ L  L +L ++ +    Q             
Sbjct: 216 -PLGILTNLDELSLNGN-QLKDIG--TLASLTNLTDLDLANN----QISN---------L 258

Query: 262 IELGSLSRLTSLHI 275
             L  L++LT L +
Sbjct: 259 APLSGLTKLTELKL 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 27/214 (12%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           +L D   +     L  I +  N I ++        L  L L  N +  I     + + +L
Sbjct: 79  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 136

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
             L++      S  S+LS L +L+ LS  +     DL  +  L+ LE LD+S + VS+I 
Sbjct: 137 NRLELSSNT-ISDISALSGLTSLQQLSFGNQVT--DLKPLANLTTLERLDISSNKVSDIS 193

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKF 261
               +L++L  L  T+    ++ P   L  L  L+EL +                +  + 
Sbjct: 194 -VLAKLTNLESLIATNNQISDITP---LGILTNLDELSL----------------NGNQL 233

Query: 262 IELGSLSRLTSL-HIHIPNGKIMSSDMSFQNLTS 294
            ++G+L+ LT+L  + + N +I +       LT 
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLA-PLSGLTK 266

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 30/220 (13%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            + D  S    + +T +      I  +        L  +    N L  I     + +  L
Sbjct: 35  NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKL 92

Query: 142 KVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE 199
             + M    I      + L+ L NL  L+L +  +  D+  +  L+ L  L+LS + +S+
Sbjct: 93  VDILMNNNQIADI---TPLANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNTISD 148

Query: 200 IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSN- 258
           I  +   L+ L+ L        +L P   L+ L  LE L +               SSN 
Sbjct: 149 IS-ALSGLTSLQQLSF-GNQVTDLKP---LANLTTLERLDI---------------SSNK 188

Query: 259 -AKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSI 297
            +    L  L+ L SL         ++      NL   S+
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 228

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 26/196 (13%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           +    +     +     L   ++ +   + +  ++  L      +  I     + + +L 
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLT 71

Query: 143 VLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEI 200
            ++     +      + L  L  L  + +++  +  D+  +  L+ L  L L  + +++I
Sbjct: 72  QINFSNNQLTDI---TPLKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITDI 127

Query: 201 PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAK 260
                 L++L  L+L+     ++     LS L  L++L                      
Sbjct: 128 D-PLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVT--------------D 169

Query: 261 FIELGSLSRLTSLHIH 276
              L +L+ L  L I 
Sbjct: 170 LKPLANLTTLERLDIS 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 26/197 (13%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            +K    +    +LT I+   N + ++       KL  +L+  N +  I       + +L
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
             L +   +  +    L  L NL  L L       D+  +  L+ L+ L          P
Sbjct: 115 TGLTLFNNQ-ITDIDPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKP 172

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSN--A 259
           +    L+ L  LD++    +  I   VL++L  LE L                 ++N  +
Sbjct: 173 L--ANLTTLERLDISSN-KVSDIS--VLAKLTNLESLIA---------------TNNQIS 212

Query: 260 KFIELGSLSRLTSLHIH 276
               LG L+ L  L ++
Sbjct: 213 DITPLGILTNLDELSLN 229

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++ +   ++    LT + L  N I  +        L  L L EN L  I       +K+L
Sbjct: 254 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 311

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
             L +      S  S +S L  L+ L  ++  +  D+  +  L+ +  L    + +S++ 
Sbjct: 312 TYLTLYFNN-ISDISPVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLT 369

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
                L+ +  L L D       P    + +     + 
Sbjct: 370 -PLANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           L+D   I+  ++LT ++L FN+I ++       KLQ L    N +  +       + ++ 
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNIN 356

Query: 143 VLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEI 200
            L  G   I   +    L+ L  +  L L+D               +     + +     
Sbjct: 357 WLSAGHNQISDLT---PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

Query: 201 PISFGRLSHLRLLDLT 216
           P +          D+T
Sbjct: 414 PATISDGGSYTEPDIT 429

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 6e-14
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 19/210 (9%)

Query: 103 NDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSF-- 160
           + + E+P +L       L      L VI    F G  DL+ +++       +  +  F  
Sbjct: 19  SKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77

Query: 161 LINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTD 217
           L  L  + +        +       L  L+ L +S + +  +P +         LLD+ D
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 218 CDDLELIPRGVLSRLR-KLEELYMSR---------SFHHWQFEGEEDSSSNA-KFIELGS 266
             ++  I R     L  +   L++++         +F+  Q +    S +N  + +    
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 267 LSRLTSLH-IHIPNGKIMS-SDMSFQNLTS 294
               +    + I   +I S      +NL  
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKK 227

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 5e-13
 Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 17/199 (8%)

Query: 94  DLTGISLMFNDIHEVPDE---LECPKLQAL-LLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
           DL  I +  ND+ EV +       PKL  + + + N+LL I    FQ + +L+ L +   
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 150 RGFSLPS-SLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSEIPISFG 205
               LP       +    L + D      +     +G      IL L+K+ + EI  S  
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR----SFHHWQFEG-----EEDSS 256
             + L  L+L+D ++LE +P  V         L +SR    S   +  E         + 
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 257 SNAKFIELGSLSRLTSLHI 275
           +  K   L  L  L    +
Sbjct: 235 NLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 9e-10
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 95  LTGISLMFNDIHEVPDE--LECPKLQALLLQEN-SLLVIPDRFFQGM-KDLKVLDMGGIR 150
           L  + +    I  +PD   +   +   L +Q+N ++  I    F G+  +  +L +    
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 151 GFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRL 207
              + +S      L  L+L D     +LP  +    S   ILD+S++ +  +P      L
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 208 SHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245
             LR        +L+ +P   L +L  L E  ++   H
Sbjct: 226 KKLRARSTY---NLKKLP--TLEKLVALMEASLTYPSH 258

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           +L+  P +     L  I +  N + ++PD    P L+ +    N L  +P+   Q +  L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELPE--LQNLPFL 197

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
             +         LP       +L ++   +     +LP +  L  L  +    + +  +P
Sbjct: 198 TAIYADNNSLKKLPDLPL---SLESIVAGNNI-LEELPELQNLPFLTTIYADNNLLKTLP 253

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
                L  L + D      L  +P  +   L  L+     
Sbjct: 254 DLPPSLEALNVRDN----YLTDLPE-LPQSLTFLDVSENI 288

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 36/227 (15%)

Query: 95  LTGISLMFNDIHEVPDELEC------------------PKLQALLLQENSLLVIPDRFFQ 136
           L  +    N + E+P+  +                   P L+ L +  N L  +P+   Q
Sbjct: 93  LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE--LQ 150

Query: 137 GMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSD 196
               LK++D+       LP       +L  ++  +  +  +LP +  L  L  +    + 
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS 206

Query: 197 VSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSS 256
           + ++P        L  +   +   LE +P   L  L  L  +Y   +      +   D  
Sbjct: 207 LKKLPDL---PLSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNN----LLKTLPDLP 256

Query: 257 SNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMSFQNLTSFSITIGDL 302
            + + + +     LT L     +   +  S+  F  L+     +  L
Sbjct: 257 PSLEALNVRDN-YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 88  SINKFED----LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKV 143
           ++    D    L  + +  N + ++P+      L+ + +  NSL  +PD        L+ 
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEF 177

Query: 144 LDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPIS 203
           +  G  +   LP  L  L  L  +   +      LP       LE +    + + E+P  
Sbjct: 178 IAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLP--DLPLSLESIVAGNNILEELP-E 232

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE 263
              L  L  +   D + L+ +P         LE L +             D+        
Sbjct: 233 LQNLPFLTTIYA-DNNLLKTLPDL----PPSLEALNVR------------DNYLTDLPEL 275

Query: 264 LGSLSRLTSLHIHI 277
             SL+ L       
Sbjct: 276 PQSLTFLDVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 28/174 (16%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            L++ P +     LT I    N +  +PD    P L+AL +++N L  +P+   Q +  L
Sbjct: 226 ILEELPELQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTDLPE-LPQSLTFL 282

Query: 142 KVLDMGGIRGFSLPSSLSFLI--------------NLRTLSLHDCRRFGDLPLIGELSLL 187
            V +        LP +L +L               +L  L++ + +   +LP       L
Sbjct: 283 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP--ALPPRL 339

Query: 188 EILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           E L  S + ++E+P       +L+ L +     L   P         +E+L M+
Sbjct: 340 ERLIASFNHLAEVPEL---PQNLKQLHVEYN-PLREFP----DIPESVEDLRMN 385

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 31/164 (18%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154
           L  ++   N+I  + D    P L+ L +  N L+ +P         L+ L         +
Sbjct: 299 LYYLNASSNEIRSLCDLP--PSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEV 352

Query: 155 PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSL----------------LEILDLSKSDV 197
           P       NL+ L +       + P +   +                  L+ L +  + +
Sbjct: 353 PELPQ---NLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 198 SEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
            E P     +  LR+      D  E           KLE+    
Sbjct: 409 REFPDIPESVEDLRMNSERVVDPYEFAH----ETTDKLEDDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 32/181 (17%), Positives = 51/181 (28%), Gaps = 37/181 (20%)

Query: 109 PDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR-GFSLPSSLSFLINLRTL 167
           P  +    LQ  L   ++L  +P      +K              + P        +   
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 168 SLHDCR------------RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDL 215
            L DC                 LP       LE L  S + ++E+P     L  L + + 
Sbjct: 64  RLRDCLDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNN 121

Query: 216 TDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHI 275
                 +L P         LE L +S              +   K  EL + S L  + +
Sbjct: 122 NLKALSDLPP--------LLEYLGVSN-------------NQLEKLPELQNSSFLKIIDV 160

Query: 276 H 276
            
Sbjct: 161 D 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 3e-13
 Identities = 48/237 (20%), Positives = 93/237 (39%), Gaps = 10/237 (4%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           +L D   +   ++L  + L  N I ++    +  KL++L L+ N +  I       +  L
Sbjct: 76  KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQL 133

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
           + L +G  +   + + LS L  L TLSL D  +  D+  +  L+ L+ L LSK+ +S++ 
Sbjct: 134 ESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDLR 191

Query: 202 ISFGRLSHLRLLDLTD--CDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA 259
            +   L +L +L+L    C +  +  +  L     ++    S        +  +    N 
Sbjct: 192 -ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250

Query: 260 KFIELGSLSRLTSLHIH---IPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEV 313
           K+      + ++ +      I   K        Q L        D+    I   +E 
Sbjct: 251 KWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEA 307

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 33/226 (14%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            + D  + N+   +  I    +DI  V      P +  L L  N L  I       +K+L
Sbjct: 32  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNL 89

Query: 142 KVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE 199
             L +    I+     SSL  L  L++LSL       D+  +  L  LE L L  + +++
Sbjct: 90  GWLFLDENKIKDL---SSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITD 145

Query: 200 IPISFGRLSHLRLLDLTDC--DDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSS 257
           I     RL+ L  L L D    D+       L+ L KL+ LY+                S
Sbjct: 146 IT-VLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYL----------------S 183

Query: 258 NAKFIELGSLSRLTSLH-IHIPNGKIMSSDMSFQNLTSFSITIGDL 302
                +L +L+ L +L  + + + + ++  ++ Q+      T+ + 
Sbjct: 184 KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 29/186 (15%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154
           +     +   I ++  +    +     L++ S+          +  +  +        S+
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV 58

Query: 155 PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD 214
              + +L N+  L L+   +  D+  +  L  L  L L ++ + ++  S   L  L+ L 
Sbjct: 59  -QGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115

Query: 215 LTDCD--DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSN--AKFIELGSLSRL 270
           L      D+       L  L +LE LY+                +N       L  L++L
Sbjct: 116 LEHNGISDIN-----GLVHLPQLESLYL---------------GNNKITDITVLSRLTKL 155

Query: 271 TSLHIH 276
            +L + 
Sbjct: 156 DTLSLE 161

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 23/194 (11%)

Query: 108 VPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRT 166
           +P  L    +++L L  N +  I +   Q   +L+ L +      ++   S S L +L  
Sbjct: 46  IPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104

Query: 167 LSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIP--ISFGRLSHLRLLDLTDCDDLE 222
           L L       +L       LS L  L+L  +    +     F  L+ L++L + + D   
Sbjct: 105 LDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 223 LIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSL-HIHIPNGK 281
            I R   + L  LEEL +               +S+ +  E  SL  + ++ H+ +   +
Sbjct: 164 KIQRKDFAGLTFLEELEI--------------DASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 282 IMS-SDMSFQNLTS 294
            +   ++     +S
Sbjct: 210 HILLLEIFVDVTSS 223

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 44/227 (19%)

Query: 105 IHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSSLSFLI 162
           IHE+       + +   + ++SL        Q   ++K LD+ G  +   S  + L+   
Sbjct: 2   IHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFT 58

Query: 163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-----------------ISFG 205
            L  L+L       +   +  LS L  LDL+ + V E+                  +S  
Sbjct: 59  KLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG 265
           R    + + L +   + ++         +++ L +  +    + +    +          
Sbjct: 118 RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN----EIDTVNFAE------LAA 166

Query: 266 SLSRLTSLHIH------IPNGKIMSS----DMSFQNLTSFSITIGDL 302
           S   L  L++       +    + +     D+S   L          
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA 213

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 7/150 (4%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154
           L  ++L +N I++V  ++   KL+ L L  N L  +   F Q    +  + +   +   +
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLI 229

Query: 155 PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI---SFGRLSHLR 211
             +L F  NL    L                   +  ++K  V ++         +  L 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 212 LLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
                 C+DL   P     RL  L   +  
Sbjct: 290 HYGAYCCEDL---PAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 35/214 (16%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
            +  F  L  ++L  N ++E  D      L+ L L  N +  +          ++ L   
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-- 203
                 +  S       + + L +  +   L     G  S ++ LDL  +++  +  +  
Sbjct: 108 NNNISRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA-KFI 262
                 L  L+L     +  +   V+    KL+ L +               SSN   F+
Sbjct: 165 AASSDTLEHLNLQYN-FIYDVKGQVV--FAKLKTLDL---------------SSNKLAFM 206

Query: 263 --ELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTS 294
             E  S + +T + +   N K++  + + +   +
Sbjct: 207 GPEFQSAAGVTWISLR--NNKLVLIEKALRFSQN 238

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 6/159 (3%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDR-FFQGMKDLKVL 144
           S ++ +    I L  N I  + D       ++Q L L+ N +  +           L+ L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 145 DMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIPIS 203
           ++     + +   +     L+TL L   +    +       + +  + L  + +  I  +
Sbjct: 175 NLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
                +L   DL          R   S+ ++++ +    
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 44/227 (19%)

Query: 105 IHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSSLSFLI 162
           IHE+       + +   + ++SL        Q   ++K LD+ G  +   S  + L+   
Sbjct: 2   IHEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFT 58

Query: 163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-----------------ISFG 205
            L  L+L       +   +  LS L  LDL+ + V E+                  +S  
Sbjct: 59  KLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG 265
           R    + + L +   + ++         +++ L +  +    + +    +          
Sbjct: 118 RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN----EIDTVNFAEL------AA 166

Query: 266 SLSRLTSLHIH------IPNGKIMSS----DMSFQNLTSFSITIGDL 302
           S   L  L++       +    + +     D+S   L          
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA 213

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 8/163 (4%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDR-FFQGMKDLKVL 144
           P       +T ISL  N +  +   L     L+   L+ N       R FF   + ++ +
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 145 DMGGIRGFSLPSSLSF-LINLRTLSLHDCRRFGDLPLIG----ELSLLEILDLSKSDVSE 199
               ++  +  +     +  L     + C              +     +L    S+   
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327

Query: 200 IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           +       +  R +D         +   V  R +    L   +
Sbjct: 328 LECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQKK 369

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 29/211 (13%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
            +  F  L  ++L  N ++E  D      L+ L L  N +  +          ++ L   
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-- 203
                 +  S       + + L +  +   L     G  S ++ LDL  +++  +  +  
Sbjct: 108 NNNISRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 204 FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE 263
                 L  L+L     +  +   V+    KL+ L +S      +              E
Sbjct: 165 AASSDTLEHLNLQYN-FIYDVKGQVV--FAKLKTLDLS----SNKLAFMGP--------E 209

Query: 264 LGSLSRLTSLHIHIPNGKIMSSDMSFQNLTS 294
             S + +T + +   N K++  + + +   +
Sbjct: 210 FQSAAGVTWISLR--NNKLVLIEKALRFSQN 238

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 9/156 (5%)

Query: 92  FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
            +D T + L  N ++           +L  L L    L  +       +  L  LD+   
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHN 87

Query: 150 RGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-FGR 206
           +  SLP     L  L  L +   R    LP   +  L  L+ L L  +++  +P      
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
              L  L L   ++L  +P G+L+ L  L+ L +  
Sbjct: 147 TPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 122 LQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRRFGDLPL 180
             + +L  +P       KD  +L +     ++   + L     L  L+L        L +
Sbjct: 17  CDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV 72

Query: 181 IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240
            G L +L  LDLS + +  +P+    L  L +LD++    L  +P G L  L +L+ELY+
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYL 131

Query: 241 SR 242
             
Sbjct: 132 KG 133

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 10/152 (6%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154
           LT ++L   ++ ++  +   P L  L L  N L  +P    Q +  L VLD+   R  SL
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSL 115

Query: 155 PSSLSF--LINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-FGRLSH 209
           P       L  L+ L L        LP  L+     LE L L+ ++++E+P      L +
Sbjct: 116 PLGA-LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 210 LRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           L  L L + + L  IP+G       L   ++ 
Sbjct: 174 LDTLLLQE-NSLYTIPKGFFGSH-LLPFAFLH 203

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 52/246 (21%)

Query: 87  PSINKFEDLTGISLM-FNDIH-EVPDEL-ECPKLQALLLQENSLL-VIPDRFFQGMKDLK 142
            S+     L  + +   N++   +P  + +  +L  L +   ++   IPD F   +K L 
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV 128

Query: 143 VLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGEL-SLLEILDLSKSDVS 198
            LD     + G +LP S+S L NL  ++    R  G +P   G    L   + +S++ ++
Sbjct: 129 TLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 199 -EIPISFGRLSHLRLLDLTDCDDLEL---IPRGVLSRLRKLEELYMSRSFHHWQFEGEED 254
            +IP +F  L+ L  +DL+      L            +  ++++++++        +  
Sbjct: 188 GKIPPTFANLN-LAFVDLSRN---MLEGDASVL-FGSDKNTQKIHLAKN----SLAFDLG 238

Query: 255 SSSNAKFIE----------------LGSLSRLTSLHI-------HIPNGKIMSSDMSFQN 291
               +K +                 L  L  L SL++        IP G         Q 
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN------LQR 292

Query: 292 LTSFSI 297
               + 
Sbjct: 293 FDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%)

Query: 129 VIPDRFFQGMKDLKVLDMGG--IRG-FSLPSSLSFLINLRTLSLHDCRRF-GDLPL-IGE 183
           V+ D   Q  + +  LD+ G  +   + +PSSL+ L  L  L +       G +P  I +
Sbjct: 41  VLCDTDTQTYR-VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 184 LSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMS 241
           L+ L  L ++ ++VS  IP    ++  L  LD +    L   +P   +S L  L  +   
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFD 157

Query: 242 R 242
            
Sbjct: 158 G 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 36/155 (23%)

Query: 154 LPSSLSFLINLRTLSLHDCRRFGDLPL---IGELSLLEILDLSKSD--VSEIPISFGRLS 208
           L  + +    +  L L         P+   +  L  L  L +   +  V  IP +  +L+
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI--ELGS 266
            L  L +T  +    IP   LS+++ L  L  S +       G          +   + S
Sbjct: 102 QLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN----ALSGT---------LPPSISS 147

Query: 267 LSRLTSLHIH-------IPNGKIMSSDMSFQNLTS 294
           L  L  +          IP+        S+ + + 
Sbjct: 148 LPNLVGITFDGNRISGAIPD--------SYGSFSK 174

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 27/228 (11%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           +     +    +L G+ L  N I ++       K+  L L  N L  +      G++ +K
Sbjct: 53  VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIK 110

Query: 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI 202
            LD+   +   + + L+ L NL+ L L    +  ++  +  L+ L+ L +  + VS++  
Sbjct: 111 TLDLTSTQITDV-TPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLT- 167

Query: 203 SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSN--AK 260
               LS L  L   D    ++ P   L+ L  L E+++                +N  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHL---------------KNNQISD 209

Query: 261 FIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFIS 308
              L + S L  + +   N  I +  + + N       +   +   I+
Sbjct: 210 VSPLANTSNLFIVTLT--NQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++ D   +     +T + L  N +  V        ++ L L    +  +      G+ +L
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNL 131

Query: 142 KVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE 199
           +VL +    I      S L+ L NL+ LS+ +  +  DL  +  LS L  L    + +S+
Sbjct: 132 QVLYLDLNQITNI---SPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNKISD 187

Query: 200 IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           I      L +L  + L +    ++ P   L+    L  + ++
Sbjct: 188 IS-PLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 12/161 (7%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           +          +   I+   +++ +   + +   +  L      +  I     Q + +L 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLI 66

Query: 143 VLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEI 200
            L++    I      + L  L  +  L L       ++  I  L  ++ LDL+ + ++++
Sbjct: 67  GLELKDNQITDL---APLKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 201 PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
                 LS+L++L L       + P   L+ L  L+ L + 
Sbjct: 123 T-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIG 159

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++ D   +    +L  + L  N I  +        LQ L +    +  +       +  L
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKL 175

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
             L     +   + S L+ L NL  + L +  +  D+  +   S L I+ L+   ++  P
Sbjct: 176 TTLKADDNKISDI-SPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTITNQP 233

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLS 230
           + +   ++L + ++        I    +S
Sbjct: 234 VFY--NNNLVVPNVVKGPSGAPIAPATIS 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           +L D   +   ++L  + L  N + ++    +  KL++L L+ N +  I       +  L
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQL 136

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
           + L +G  +   + + LS L  L TLSL D  +  D+  +  L+ L+ L LSK+ +S++ 
Sbjct: 137 ESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDLR 194

Query: 202 ISFGRLSHLRLLDLTD--CDDLELIPRGVLSRLRKLEEL 238
            +   L +L +L+L    C +  +  +  L     ++  
Sbjct: 195 -ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            + D  + N+   +  I    +DI  V      P +  L L  N L  I       +K+L
Sbjct: 35  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNL 92

Query: 142 KVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE 199
             L +    ++     SSL  L  L++LSL       D+  +  L  LE L L  + +++
Sbjct: 93  GWLFLDENKVKDL---SSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITD 148

Query: 200 IPISFGRLSHLRLLDLTDC--DDLELIPRGVLSRLRKLEELYMS 241
           I     RL+ L  L L D    D+       L+ L KL+ LY+S
Sbjct: 149 IT-VLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLS 186

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           +K   S + F +    +L    + +   + E   +  ++   + +  +     Q + ++ 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVT 71

Query: 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI 202
            L + G +   +   L+ L NL  L L +  +  DL  + +L  L+ L L  + +S+I  
Sbjct: 72  KLFLNGNKLTDI-KPLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNGISDIN- 128

Query: 203 SFGRLSHLRLLDLTDC--DDLELIPRGVLSRLRKLEELYMS 241
               L  L  L L +    D+      VLSRL KL+ L + 
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLE 164

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 103 NDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI 162
             I ++  +    +     L++ S+          +  +  +        S+   + +L 
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLP 68

Query: 163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD--D 220
           N+  L L+   +  D+  +  L  L  L L ++ V ++  S   L  L+ L L      D
Sbjct: 69  NVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISD 126

Query: 221 LELIPRGVLSRLRKLEELYMSR 242
           +       L  L +LE LY+  
Sbjct: 127 IN-----GLVHLPQLESLYLGN 143

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 10/153 (6%)

Query: 97  GISLMFNDIHEVPDE----LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           G S    +  +  +     LE   ++   L ++ +  +    F    DL+ L +      
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 153 SLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLS 208
            +   +   L +L  L+L      G +   +   L  LE+LDLS + +  +   SF  L 
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           +L+ L L     L+ +P G+  RL  L+++++ 
Sbjct: 372 NLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 44/245 (17%), Positives = 78/245 (31%), Gaps = 41/245 (16%)

Query: 95  LTGISLMFNDIHEVP-----DELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG- 148
           L  + +       V        L    L  L L  N  L +    F G+ +L+VL +   
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGL--SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113

Query: 149 -IRGFSLPSSLSF--LINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVSEIPI- 202
            + G  L  +  F  L +L  L L D    +         +    +LDL+ + V  I   
Sbjct: 114 NLDGAVLSGNF-FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

Query: 203 SFGRLSHLRLLDL-------TDCDDLEL--IPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253
                       L        D ++  L     G   +   +  L +S +     F    
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN----GF---- 224

Query: 254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMS---------SDMSFQNLTSFSITIGDLAA 304
             S   +F +  + +++ SL +        S          + +F+ L +  +   DL+ 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 305 GFISA 309
             I A
Sbjct: 285 SKIFA 289

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--IRGFSLPSSLSFLINLRTLSLHDC 172
             +  + L  NS+  + +  F  ++DL+ L +           ++   L +L  L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 173 RRFGDLP--LIGELSLLEILDLSKSDVSEIPI---SFGRLSHLRLLDLTDCDDLELIPRG 227
            +F  L       L+ LE+L L++ ++    +    F  L+ L +L L D +  ++ P  
Sbjct: 90  -QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 228 VLSRLRKLEELYMSR 242
               +R+   L ++ 
Sbjct: 149 FFLNMRRFHVLDLTF 163

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 53/210 (25%)

Query: 114 CPKLQALLLQENSLLVIP-DRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI---------- 162
              +  L L  N        RFF  +   K+  +     +++ SS               
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 163 -----NLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLD 214
                 ++T  L    +   L   +    + LE L L+++++++I   +F  L+HL  L+
Sbjct: 271 GLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 215 LTDCDDLELIPRGVLSRLRKLEELYMS----RSFHHWQFEGEEDSSSNAKFIELGSLSRL 270
           L+  + L  I   +   L KLE L +S    R+     F G               L  L
Sbjct: 330 LSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG---------------LPNL 373

Query: 271 TSLHIH------IPNGKIMSSDMSFQNLTS 294
             L +       +P+G        F  LTS
Sbjct: 374 KELALDTNQLKSVPDG-------IFDRLTS 396

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 95  LTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF 152
           L  ++L  N +  +   +     KL+ L L  N +  + D+ F G+ +LK L +   +  
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

Query: 153 SLPSS-LSFLINLRTLSLH----DC 172
           S+P      L +L+ + LH    DC
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 19/113 (16%)

Query: 187 LEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245
           +  +DLS + ++E+   SF RL  L+ L +       +I       L  L  L +  +  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-- 89

Query: 246 HWQFEGEEDSSSNAKFIELGSLSRLTSL-HIHIPNGKIMSS---DMSFQNLTS 294
             QF            +E G+ + L +L  + +    +  +      F+ LTS
Sbjct: 90  --QF----------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 24/190 (12%)

Query: 95  LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154
           L  +S+  N +  +P      +L  L    N L  +P         LK L + G R  SL
Sbjct: 183 LQELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL 236

Query: 155 PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD 214
           P   S    L+ L +   R    LP     S L  L + ++ ++ +P S   LS    ++
Sbjct: 237 PVLPS---ELKELMVSGNR-LTSLP--MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290

Query: 215 LTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE-----------EDSSSNAKFIE 263
           L     L       L  +                                D    A+  E
Sbjct: 291 LEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 264 LGSLSRLTSL 273
                R    
Sbjct: 350 PAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 92  FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
              +T + +  N++  +P     P+L+ L +  N L  +P         L  L +     
Sbjct: 60  PAHITTLVIPDNNLTSLPALP--PELRTLEVSGNQLTSLPVLPPG----LLELSIFSNPL 113

Query: 152 FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLR 211
             LP+  S    L  L +    +   LP       L+ L +S + ++ +P     L  L 
Sbjct: 114 THLPALPS---GLCKLWIFGN-QLTSLP--VLPPGLQELSVSDNQLASLPALPSELCKLW 167

Query: 212 LLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
             +      L  +P         L+EL +S
Sbjct: 168 AYNN----QLTSLP----MLPSGLQELSVS 189

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 87  PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDM 146
                  +L+  S     +  +P       L  L +  N L  +P         L+ L +
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPVLPPG----LQELSV 148

Query: 147 GGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGR 206
              +  SLP+  S    L  L  ++ +    LP+    S L+ L +S + ++ +P     
Sbjct: 149 SDNQLASLPALPS---ELCKLWAYNNQ-LTSLPM--LPSGLQELSVSDNQLASLPTLPSE 202

Query: 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           L  L   +      L  +P    +    L+EL +S
Sbjct: 203 LYKLWAYNN----RLTSLP----ALPSGLKELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 103 NDIHEVPDELE---CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS 159
                V  ++          L + E+ L  +PD        +  L +      SLP+   
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPP 81

Query: 160 FLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDC 218
               LRTL +    +   LP L   L  L I     + +  +P      S L  L +   
Sbjct: 82  ---ELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGN 131

Query: 219 DDLELIPRGVLSRLRKLEELYMS 241
             L  +P         L+EL +S
Sbjct: 132 -QLTSLP----VLPPGLQELSVS 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 103 NDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSF-- 160
            DI  +P     P  Q L L E  L  IP   F  + ++  + +          S SF  
Sbjct: 21  KDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 161 LINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIP--ISFGRLSHLRLLDLT 216
           L  +  + + + R    +    + EL LL+ L +  + +   P            +L++T
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

Query: 217 DCDDLELIPRGVLSRLRK-LEELYMSR 242
           D   +  IP      L      L +  
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYN 165

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 34/183 (18%)

Query: 94  DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIR 150
               + L+   +  +P       P +  + +  +  L  +    F  +  +  +++   R
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 151 GFSL--PSSLSFLINLRTLSLHDCR--------RFGDLPLIGEL---------------- 184
             +   P +L  L  L+ L + +          +     +   L                
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 185 ----SLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR-KLEELY 239
               +    L L  +  + +       + L  + L     L +I +     +      L 
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 240 MSR 242
           +S+
Sbjct: 212 VSQ 214

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 23/112 (20%)

Query: 171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVL 229
            C+    +P +      + L L ++ +  IP  +F  L ++  + ++    L+ +     
Sbjct: 19  TCKDIQRIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 230 SRLRKLEELYMS-----RSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH 276
             L K+  + +              +                L  L  L I 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKE---------------LPLLKFLGIF 113

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 6e-11
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 22/161 (13%)

Query: 94  DLTGISLMFNDIHEVPDEL---ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG-- 148
               + L  N++  +  E        L +LLL  N L  I    F  + +L+ LD+    
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 149 IRGFSLPS-SLSFLINLRTLSLHDCRRFGDLPLIGE-----LSLLEILDLSKSDVSEIP- 201
           +   +L     S L  L  L L++      + ++       ++ L+ L LS++ +S  P 
Sbjct: 100 LH--TLDEFLFSDLQALEVLLLYNNH----IVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 202 ---ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
                  +L  L LLDL+  + L+ +P   L +L    +  
Sbjct: 154 ELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 40/199 (20%)

Query: 114 CPKL-----QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSF--LINLRT 166
           CP         L   +  L  +P           +LD+       L +  +   L NL +
Sbjct: 12  CPANCLCASNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHS 68

Query: 167 LSLHDCRRFGDLPLIGE-----LSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDD 220
           L L        L  I       +  L  LDLS + +  +    F  L  L +L L   + 
Sbjct: 69  LLLSHNH----LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNH 123

Query: 221 LELIPRGVLSRLRKLEELYMS----RSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH 276
           + ++ R     + +L++LY+S      F     +                L +L  L + 
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD------------GNKLPKLMLLDLS 171

Query: 277 IPNGKIMS-SDMSFQNLTS 294
             + K+        Q L +
Sbjct: 172 --SNKLKKLPLTDLQKLPA 188

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 8e-11
 Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           E             + + L   ++  +PD L  P++  L + +N+L+ +P+        L
Sbjct: 48  EAVSLLKECLINQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLPELP----ASL 102

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
           + LD    R  +LP   +   +L+ L + +  +   LP     +LLE ++   + ++ +P
Sbjct: 103 EYLDACDNRLSTLPELPA---SLKHLDVDNN-QLTMLP--ELPALLEYINADNNQLTMLP 156

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
                 + L +L + +   L  +P         LE L +S 
Sbjct: 157 EL---PTSLEVLSVRNN-QLTFLP----ELPESLEALDVST 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 16/186 (8%)

Query: 92  FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
              L  + +  N +  +P+      L+ +    N L ++P+        L+VL +   + 
Sbjct: 119 PASLKHLDVDNNQLTMLPELP--ALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQL 172

Query: 152 FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLE----ILDLSKSDVSEIPISFGR 206
             LP       +L  L +        LP +       E         ++ ++ IP +   
Sbjct: 173 TFLPELPE---SLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS 228

Query: 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS 266
           L     + L D + L    R  LS+     + +  R +       +              
Sbjct: 229 LDPTCTIILED-NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 267 LSRLTS 272
                 
Sbjct: 288 FPENKQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 14/125 (11%)

Query: 120 LLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL--SFLINLRTLSLHDCRRFGD 177
                N++      +F      +   + G       S L    +     L L+       
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSS 73

Query: 178 LP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLE 236
           LP  +     + +L+++++ +  +P     L +L   D      L  +P         L+
Sbjct: 74  LPDNLP--PQITVLEITQNALISLPELPASLEYLDACDN----RLSTLP----ELPASLK 123

Query: 237 ELYMS 241
            L + 
Sbjct: 124 HLDVD 128

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 14/156 (8%)

Query: 95  LTGISLMFNDIHEVP----DELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR 150
           L  + L  N +  +P     EL    L+ L + +N L  +P   F  + +L  L +   +
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKEL--KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 151 GFSLPSSLSF--LINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-FG 205
             SLP  + F  L  L  LSL        LP  +  +L+ L+ L L  + +  +P   F 
Sbjct: 121 LKSLPPRV-FDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           +L+ L+ L L + + L+ +P G    L KL+ L + 
Sbjct: 179 KLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQ 213

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 20/186 (10%)

Query: 94  DLTGISLMFNDIHEVP----DELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGI 149
           D   + L  N +  +P      L   KL+ L L +N L  +P   F+ +K+L+ L +   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRL--TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 150 RGFSLPSSL-SFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFG 205
           +  +LP  +   L+NL  L L    +   LP  +   L+ L  L L  +++  +P   F 
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 206 RLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG 265
           +L+ L+ L L   + L+ +P G   +L +L+ L +     + Q +          F  L 
Sbjct: 155 KLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKL----DNNQLK----RVPEGAFDSLE 205

Query: 266 SLSRLT 271
            L  L 
Sbjct: 206 KLKMLQ 211

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 29/211 (13%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
           S  +   LT +    + I ++    +   L  L+   N++  +         +L  L   
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACD 93

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRL 207
             +  +L   ++ L  L  L+     +   L  + +  LL  L+ +++ ++EI +S    
Sbjct: 94  SNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEIDVS--HN 147

Query: 208 SHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL 267
           + L  LD      +  +    ++   +L  L  S      +             +++   
Sbjct: 148 TQLTELDCHLNKKITKLD---VTPQTQLTTLDCS----FNKITE----------LDVSQN 190

Query: 268 SRLTSLHIHIPNGKIMSSDMS-FQNLTSFSI 297
             L  L+       I   D++    LT    
Sbjct: 191 KLLNRLNCD--TNNITKLDLNQNIQLTFLDC 219

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 29/211 (13%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
            ++    LT +    N      D     +L  L    N +  +        K L  L+  
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCD 199

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRL 207
                 L   L+  I L  L      +  ++  +  L+ L   D S + ++E+ +S   L
Sbjct: 200 TNNITKLD--LNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNPLTELDVS--TL 253

Query: 208 SHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL 267
           S L  L      DL  I    L+   +L                        K +++   
Sbjct: 254 SKLTTLHCIQT-DLLEID---LTHNTQLIYFQAE-------------GCRKIKELDVTHN 296

Query: 268 SRLTSLHIHIPNGKIMSSDMS-FQNLTSFSI 297
           ++L  L        I   D+S    L    +
Sbjct: 297 TQLYLLDCQ--AAGITELDLSQNPKLVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 32/179 (17%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
                 +     LT +   FN I E+ D  +   L  L    N++  +          L 
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKLD---LNQNIQLT 215

Query: 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI 202
            LD    +   +   ++ L  L            +L  +  LS L  L   ++D+ EI +
Sbjct: 216 FLDCSSNKLTEID--VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQTDLLEIDL 271

Query: 203 S--------------------FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
           +                        + L LLD      +  +    LS+  KL  LY++
Sbjct: 272 THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG-ITELD---LSQNPKLVYLYLN 326

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 22/154 (14%)

Query: 155 PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD 214
             S   L  L +L  H+     D+  I +L+ L  L  + ++++ + +S  + ++L  L 
Sbjct: 35  TISEEQLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNNITTLDLS--QNTNLTYLA 91

Query: 215 LTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA-----------KFIE 263
                 L  +    ++ L KL  L    +    +    + S +               I+
Sbjct: 92  CDSN-KLTNLD---VTPLTKLTYLNCDTN----KLTKLDVSQNPLLTYLNCARNTLTEID 143

Query: 264 LGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSI 297
           +   ++LT L  H+              LT+   
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 6/126 (4%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
            +     L           +  D     +L  L  Q   +  +          L  L + 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLN 326

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRL 207
                 L   +S    L++LS  +     D   +G++  L     ++     +P      
Sbjct: 327 NTELTELD--VSHNTKLKSLSCVNAH-IQDFSSVGKIPALNNNFEAEGQTITMPKETLTN 383

Query: 208 SHLRLL 213
           + L + 
Sbjct: 384 NSLTIA 389

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 11/158 (6%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
           +  +   LT I+L   ++ ++        ++ L +              G+ +L+ L + 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIM 96

Query: 148 GIR-GFSLPSSLSFLINLRTLSLHDCR-RFGDLPLIGELSLLEILDLSKSDVSEIPISFG 205
           G         +LS L +L  L +         L  I  L  +  +DLS +      +   
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 206 RLSHLRLLDLTDC--DDLELIPRGVLSRLRKLEELYMS 241
            L  L+ L++      D        +    KL +LY  
Sbjct: 157 TLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 41/211 (19%), Positives = 71/211 (33%), Gaps = 37/211 (17%)

Query: 103 NDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI 162
            D   +PD       +A L          +     M  L  + +  I    L + + +  
Sbjct: 12  QDNVNIPD----STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAH 66

Query: 163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDC--D 219
           N++ L++++     +   I  LS LE L +   DV+   I     L+ L LLD++    D
Sbjct: 67  NIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSL-HIHIP 278
           D  L     ++ L K+  + +               S N    ++  L  L  L  ++I 
Sbjct: 126 DSILTK---INTLPKVNSIDL---------------SYNGAITDIMPLKTLPELKSLNIQ 167

Query: 279 NGKIMSSDMS----FQNLTSFSIT---IGDL 302
              +   D      F  L         IG  
Sbjct: 168 FDGV--HDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 3/121 (2%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIH-EVPDELE-CPKLQALLLQENSLLVIPDRFFQGMK 139
              ++  I+   +L  + +M  D+  +    L     L  L +  ++           + 
Sbjct: 77  HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 140 DLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE 199
            +  +D+      +    L  L  L++L++       D   I +   L  L      +  
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQTIGG 195

Query: 200 I 200
            
Sbjct: 196 K 196

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 30/181 (16%)

Query: 90  NKFEDLTGISLMFNDIHEVPDE--LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG 147
           + F ++    L  +D   +             L   +N       +    +K L+ L + 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 148 GIRGFSLPSSLSFLINLRTLSLHDCRR-----------FGDLPLIGELSL---------- 186
                +         N+ +L   D                    I  L+L          
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 187 ------LEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240
                 +++LDL  + +  IP     L  L+ L++   + L+ +P GV  RL  L+ +++
Sbjct: 446 RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWL 504

Query: 241 S 241
            
Sbjct: 505 H 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 16/205 (7%)

Query: 94  DLTGISLMFNDIHEVPDE--LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
               +SL  N I E+         +L+ L L  N +  +    F   +DL+ LD+   R 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 152 FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGE---LSLLEILDLSKSDVSEIPISFGRLS 208
            ++      + +LR L L     F  LP+  E   L+ L  L LS +   ++      ++
Sbjct: 113 QNISCCP--MASLRHLDLS-FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVA 167

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLS 268
           HL L  +        I  G    L+      +   FH           S    + + +L 
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL------FSVQVNMSVNALG 221

Query: 269 RLTSLHIHIPNGKIMSSDMSFQNLT 293
            L   +I + +            LT
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELT 246

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 36/158 (22%)

Query: 116 KLQALLLQENSLLVIPDRFFQGMKDLKVLDM----------GGIRGF------------- 152
           ++   +L  +    I             L+            G                 
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 153 -SLPSSLSFLINLRTLSLHDCRRFGDLP------LIGELSLLEILDLSKSDVSEIPISFG 205
            +         N+ +L   D      L              + +L+LS + ++     F 
Sbjct: 390 KNFFKVALMTKNMSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FR 446

Query: 206 RL-SHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
            L   +++LDL +   +  IP+ V   L+ L+EL ++ 
Sbjct: 447 CLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQELNVAS 482

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVP--DELECPKLQALLLQENSLLVIPDRFFQGMK 139
           ++K    I    ++  ++L  N +H++    EL    L  L+L  N L  +P+  F  + 
Sbjct: 52  DIKSVQGIQYLPNVRYLALGGNKLHDISALKEL--TNLTYLILTGNQLQSLPNGVFDKLT 109

Query: 140 DLKVLDMGGIRGFSLPSSL-SFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSD 196
           +LK L +   +  SLP  +   L NL  L+L    +   LP  +  +L+ L  LDLS + 
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQ 168

Query: 197 VSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
           +  +P   F +L+ L+ L L   + L+ +P GV  RL  L+ ++
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIW 211

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLK 142
           + D  + N+   +  I    +DI  V      P ++ L L  N L  I     + + +L 
Sbjct: 31  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLT 88

Query: 143 VLDMGGIRGFSLPSSL-SFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSE 199
            L + G +  SLP+ +   L NL+ L L +  +   LP  +  +L+ L  L+L+ + +  
Sbjct: 89  YLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147

Query: 200 IPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
           +P   F +L++L  LDL   + L+ +P GV  +L +L++L + +
Sbjct: 148 LPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLYQ 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 30/230 (13%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
            +          +    +L    + ++  + E   +Q      +++  +     Q   +L
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNL 65

Query: 142 KVLDMGG--IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE 199
           K L +    I      S L  L  L  LS++   R  +L  I     L  L L  +++ +
Sbjct: 66  KELHLSHNQISDL---SPLKDLTKLEELSVNRN-RLKNLNGIPSAC-LSRLFLDNNELRD 120

Query: 200 IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNA 259
              S   L +L +L + +     ++    L  L KLE L +                   
Sbjct: 121 TD-SLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDL----------------HGN 160

Query: 260 KFIELGSLSRLTSLH-IHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFIS 308
           +    G L+RL  ++ I +   K ++  + +Q     + T+ D    +IS
Sbjct: 161 EITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 30/152 (19%)

Query: 93  EDLTGISLMFNDIHEVP----DELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG 148
           E +T I L  N I  +P          KL+ + L  N +  +    FQG++ L  L + G
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPY--KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 149 IRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRL 207
            +   LP SL                F  L        L++L L+ + ++ + + +F  L
Sbjct: 90  NKITELPKSL----------------FEGLF------SLQLLLLNANKINCLRVDAFQDL 127

Query: 208 SHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
            +L LL L D + L+ I +G  S LR ++ ++
Sbjct: 128 HNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMH 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD 177
             + L++N++ VIP   F   K L+ +D+   +   L                    F  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA----------------FQG 78

Query: 178 LPLIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLE 236
           L        L  L L  + ++E+P S F  L  L+LL L + + +  +       L  L 
Sbjct: 79  LRS------LNSLVLYGNKITELPKSLFEGLFSLQLLLL-NANKINCLRVDAFQDLHNLN 131

Query: 237 ELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSL-HIHIPN 279
            L +                +  + I  G+ S L ++  +H+  
Sbjct: 132 LLSL--------------YDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 95  LTGISLMFNDIHEVP----DELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR 150
           L  + L  N I E+P    + L    LQ LLL  N +  +    FQ + +L +L +   +
Sbjct: 82  LNSLVLYGNKITELPKSLFEGL--FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139

Query: 151 GFSLP-SSLSFLINLRTLSLH----DC 172
             ++   + S L  ++T+ L      C
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPFIC 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSF--LINLRTLSLHDCRRF 175
           Q L L +N +  +    F  + +LK L +G  +  +LP  + F  L  L  L L    + 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGT-NQL 100

Query: 176 GDLP--LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233
             LP  +   L  L+ L +  + ++E+P    RL+HL  L L   + L+ IP G   RL 
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLS 159

Query: 234 KLEELY 239
            L   Y
Sbjct: 160 SLTHAY 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 31/152 (20%)

Query: 94  DLTGISLMFNDIHEVPDE---LECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR 150
               + L  N+   +       + P+L+ +    N +  I +  F+G   +  + +   R
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 151 GFSLPSSLSF--LINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRL 207
             ++   + F  L +L+TL L   R                       ++ +   SF  L
Sbjct: 93  LENVQHKM-FKGLESLKTLMLRSNR-----------------------ITCVGNDSFIGL 128

Query: 208 SHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
           S +RLL L D   +  +  G    L  L  L 
Sbjct: 129 SSVRLLSLYDN-QITTVAPGAFDTLHSLSTLN 159

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 38/146 (26%)

Query: 163 NLRTLSLHDCRRFGDLPLIG---ELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDC 218
               L L++   F  L   G   +L  L  ++ S + +++I   +F   S +  + LT  
Sbjct: 33  YTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS- 90

Query: 219 DDLELIPRGVLSRLRKLEELYMSR----SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLH 274
           + LE +   +   L  L+ L +         +  F G               LS +  L 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---------------LSSVRLLS 135

Query: 275 IH------IPNGKIMSSDMSFQNLTS 294
           ++      +  G       +F  L S
Sbjct: 136 LYDNQITTVAPG-------AFDTLHS 154

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 9/164 (5%)

Query: 86  WPSINKFEDLTGISLMFNDIHEVPDELEC--PKLQALLLQENSLLVIPDRFFQGMKDLKV 143
           W +   +  ++ + L         D        L    +  +         ++   ++ +
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 144 LDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLPL--IGELSLLEILDLSKSDVSEI 200
            +        +     S +     L   +     D      G L+ LE L L  + + E+
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 201 PIS---FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
                   ++  L+ LD++         +G  S  + L  L MS
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 37/216 (17%), Positives = 66/216 (30%), Gaps = 38/216 (17%)

Query: 100 LMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS 159
              N +  VP +L   K   L + +N +  +       +  L++L +   R   L  S+ 
Sbjct: 7   RSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV- 64

Query: 160 FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD 219
                          F           LE LDLS + + +I        +L+ LDL+   
Sbjct: 65  ---------------FKFNQE------LEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNA 101

Query: 220 DLELIPRGVLSRLRKLEELYMSR---------SFHHWQFEGEEDSSSN--AKFIELGSLS 268
              L        + +L+ L +S             H               +  +   L 
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 269 RL--TSLHIHIPNGKIMSSDMSFQNLTSFSITIGDL 302
                SLHI  P  K     +     T  ++ + ++
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 94  DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151
           D   + L    +  + D       KL  L L  N L  +    F  + +L  L +   + 
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95

Query: 152 FSLPSSLSF--LINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS-FGR 206
            SLP  + F  L  L  L L    +   LP  +   L+ L+ L L+ + +  IP   F +
Sbjct: 96  ASLPLGV-FDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239
           L++L+ L L+  + L+ +P G   RL KL+ + 
Sbjct: 154 LTNLQTLSLST-NQLQSVPHGAFDRLGKLQTIT 185

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL-SFLINLRTLSLHDCRRFG 176
           + L LQ   L  + D  F+G+  L  L++   +  +L + +   L  L TL L +  +  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLA 96

Query: 177 DLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLE 236
            LP                        F  L+ L  L L   + L+ +P GV  RL KL+
Sbjct: 97  SLP---------------------LGVFDHLTQLDKLYL-GGNQLKSLPSGVFDRLTKLK 134

Query: 237 ELYMS 241
           EL ++
Sbjct: 135 ELRLN 139

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMG-----GIRGFSLPSSLSFLINLRTLSL 169
           P L+ L + +   L       +    L  LD+      G RG            L+ L+L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 170 HDCRRFGDLP-----LIGELSLLEILDLSKSDVSEIP--ISFGRLSHLRLLDLTDCDDLE 222
            +             L      L+ LDLS + + +     S    S L  L+L+    L+
Sbjct: 209 RNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK 266

Query: 223 LIPRGVLSRLRKL 235
            +P+G+ ++L  L
Sbjct: 267 QVPKGLPAKLSVL 279

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 152 FSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLS 208
                 L    NL  L + + +    L    +  L  L  L + KS +  +   +F    
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 209 HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
            L  L+L+    LE +    +  L  L+EL +S
Sbjct: 81  RLSRLNLSFN-ALESLSWKTVQGL-SLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 16/114 (14%)

Query: 190 LDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQF 249
           L  ++    +         +L  L + +   L+ +    L  L +L  L +         
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--------- 63

Query: 250 EGEEDSSSNAKFIELGSLSRLTSL-HIHIPNGKIMS-SDMSFQNLTSFSITIGD 301
                  S  +F+   +      L  +++    + S S  + Q L+   + +  
Sbjct: 64  -----VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 87  PSINKFEDLTGISLMFN-DIHEVPDE--LECPKLQALLLQENSLLVIPDRFFQGMKDLKV 143
             +   E+LT + +     +  +         +L+ L + ++ L  +    F     L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 144 LDMGGIRGFSLPSSLSFLINLRTLSLH------DCR 173
           L++      SL       ++L+ L L        C 
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS---LPSSLSFLINLRTLSLH 170
           C KLQ L L+   L            +L  L++ G  GFS   L + LS    L  L+L 
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 171 DCRRFGDLPLIGELS----LLEILDLSK-----SDVSEIPISFGRLSHLRLLDLTDCDDL 221
            C  F +  +   ++     +  L+LS             +   R  +L  LDL+D   L
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVML 235

Query: 222 ELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH 276
           +        +L  L+ L +SR                   +ELG +  L +L + 
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRC----------YDIIPETLLELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 114 CPKLQALLLQENSLL---VIPDRFFQGMKDLKVLDMGGIRGF----SLPSSLSFLINLRT 166
           C +L  L L          +        + +  L++ G R       L + +    NL  
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 167 LSLHDCRRFGD--LPLIGELSLLEILDLSK----SDVSEIPISFGRLSHLRLLDLTDC 218
           L L D     +       +L+ L+ L LS+       +   +  G +  L+ L +   
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--LLELGEIPTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 112 LECPKLQALLLQENSLLVIP-DRFFQGMKDLKVLDMGGIRGF-SLPSSLSFLINLRTLSL 169
               ++Q + L  + + V            L+ L + G+R    + ++L+   NL  L+L
Sbjct: 90  FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149

Query: 170 HDCRRFGD---LPLIGELSLLEILDLSK----SDVSEIPISFGRLSHLRLLDLTDC---- 218
             C  F +     L+   S L+ L+LS     ++             +  L+L+      
Sbjct: 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209

Query: 219 DDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHI 275
              +L    ++ R   L  L +S S              N  F E   L+ L  L +
Sbjct: 210 QKSDL--STLVRRCPNLVHLDLSDSVM----------LKNDCFQEFFQLNYLQHLSL 254

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 6/126 (4%)

Query: 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL-SFLINLRTLSLHDCRRFG 176
             L L+ NSL  +P+  F  +  L  L +GG +  SLP+ + + L +L  L+L    +  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQ 89

Query: 177 DLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233
            LP  +  +L+ L+ L L+ + +  +P   F +L+ L+ L L   + L+ +P GV  RL 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLT 148

Query: 234 KLEELY 239
            L+ ++
Sbjct: 149 SLQYIW 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 76/514 (14%), Positives = 129/514 (25%), Gaps = 185/514 (35%)

Query: 1   QEDYNIPIEVLARYGWGLRCLQNVDSV--------EKARGRARSAVSTLI-FSYLLIDG- 50
           + +   P  +   Y      L N + V         +   + R A+  L     +LIDG 
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 51  ---GKEGYVKMHDVVRYVAQQIASKNK-FMIKAGVELKDWPSINKFEDL-TGISLMFNDI 105
              GK       DV      Q     K F +           +   + L   I   +   
Sbjct: 159 LGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 106 HEVPDELECP------KLQALLLQE---NSLLVIPD----RFFQGM----------KDLK 142
            +    ++        +L+ LL  +   N LLV+ +    + +             +  +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 143 VLD-MGGIR-----------GFSLPSSLSFLINLRTLSLHDCRRFGDLP----------- 179
           V D +                 +     S L  L+ L      R  DLP           
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDC----RPQDLPREVLTTNPRRL 330

Query: 180 -LIGEL-----------------SLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDC-DD 220
            +I E                   L  I++ S             L+ L   +     D 
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------------LNVLEPAEYRKMFDR 377

Query: 221 LEL------IPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL------S 268
           L +      IP  +LS +              W    + D       +   SL       
Sbjct: 378 LSVFPPSAHIPTILLSLI--------------WFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 269 RLTSLH-------IHIPN-----GKIMSSDMSFQNLTSFSIT-----------IGD-LAA 304
              S+        + + N       I+      +   S  +            IG  L  
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 305 GFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVS 364
                 + +F   F            D R      +++   +R +  A      + N + 
Sbjct: 484 IEHPERMTLFRMVF-----------LDFR------FLEQ-KIRHDSTAWNASGSILNTLQ 525

Query: 365 DLA--------NDGFNELM------FLGIFGCNE 384
            L         ND   E +      FL      E
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFL--PKIEE 557

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 91  KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG-- 148
           +F +L  +SL+   +  V +  + PKL+ L L EN +    D   + + +L  L++ G  
Sbjct: 47  EFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 149 IRGFSLPSSLSFLINLRTLSLHDC--------RRFGDLPLIGELSLLEILDLSKSDVSEI 200
           ++  S    L  L  L++L L +C        R      +   L  L  LD    +  E 
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES----VFKLLPQLTYLDGYDREDQEA 162

Query: 201 P 201
           P
Sbjct: 163 P 163

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 89  INKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG 148
            ++FE+L  +S +   +  + +  +  KL+ L L +N +    +   +   +L  L++ G
Sbjct: 38  TDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 149 --IRGFSLPSSLSFLINLRTLSLHDC 172
             I+  S    L  L NL++L L +C
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 101 MFNDIHEVPDELECPKLQALLLQENSLLVIPDR-FFQGMKDLKVLDMGGIRGFSLPSSLS 159
           M   IH          ++ L+L  +              ++L+ L    +   S+ ++L 
Sbjct: 3   MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLP 61

Query: 160 FLINLRTLSLHDCRRFGDLPLIGE-LSLLEILDLSK---SDVSEIPISFGRLSHLRLLDL 215
            L  L+ L L D R  G L ++ E    L  L+LS     D+S I     +L +L+ LDL
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDL 120

Query: 216 TDC 218
            +C
Sbjct: 121 FNC 123

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 8/138 (5%)

Query: 114 CPKLQALLLQENSLLVIPD----RFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL 169
              L+ L         I         +  + L  + +G      L        NL     
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 170 HDCRRFGDLPL----IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIP 225
                   +P     +     L  L LS    +E+PI F   + +R LDL          
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 226 RGVLSRLRKLEELYMSRS 243
             ++ +   LE L     
Sbjct: 311 CTLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 25/177 (14%), Positives = 59/177 (33%), Gaps = 17/177 (9%)

Query: 114 CPKLQALLLQE-----NSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS 168
             +L+++  +        L  +       ++ LK+    G     L S ++    ++TL 
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 169 LHDCRRFGD----LPLIGE-LSLLEILDLSKSDVSEIPIS-----FGRLSHLRLLDLTDC 218
           + +          L  + +  + LE+L+   ++ ++I              L  + + D 
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230

Query: 219 DDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHI 275
           + LEL+  G       LEE              +  +    + +    LS +    +
Sbjct: 231 EILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 24/199 (12%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDELECPKLQALL-LQENSLLVIPDRFFQGMKDLKVLDM 146
           S+ K   L        ++ E+  E +   L  +L ++    L+      Q    LK +D 
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 147 GGIRGFSLPSS---------LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDV 197
                     S              ++R L L        L  + +L L+  LDLS + +
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRL 475

Query: 198 SEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSS 257
             +P +   L  L +L  +D   LE +    ++ L +L+EL +     + + +       
Sbjct: 476 RALPPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLC----NNRLQQSAA--- 525

Query: 258 NAKFIELGSLSRLTSLHIH 276
                 L S  RL  L++ 
Sbjct: 526 ---IQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 84  KDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKV 143
           ++     ++ D+  + L   D+  +    +   +  L L  N L  +P      ++ L+V
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEV 490

Query: 144 LDMGGIRGFSLPSSLSFLINLRTLSLHDCR--RFGDLPLIGELSLLEILDLSKSDVSEIP 201
           L        ++   ++ L  L+ L L + R  +   +  +     L +L+L  + + +  
Sbjct: 491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

Query: 202 ISFGR----LSHLRLLD 214
               R    L  +  + 
Sbjct: 550 GIQERLAEMLPSVSSIL 566

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 92  FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG--I 149
            +    I    N+I ++       +L+ LL+  N +  I +   Q + DL  L +    +
Sbjct: 41  LDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 150 RGFSLPSSLSFLINLRTLSLHDC--------RRFGDLPLIGELSLLEILDLSKSDVSEI 200
                   L+ L +L  L +           R +    +I ++  + +LD  K  + E 
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY----VIYKVPQVRVLDFQKVKLKER 155

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 99  SLMFNDIHEVPDELE-CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS 157
             M   I ++   L      + L L  N++  I      GM++L++L +G      + + 
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENL 88

Query: 158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSK---SDVSEIPISFGRLSHLRLLD 214
            +    L  L +    +   L  I +L  L +L +S    ++  EI      L  L  L 
Sbjct: 89  DAVADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLL 146

Query: 215 LTD---CDDLELIPRG------VLSRLRKLEEL 238
           L      +D +           V+ RL  L++L
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 25/177 (14%)

Query: 114 CPKLQALLLQENSLLVIPDR----FFQGMKDLKVLDMGGIRGFS---LPSSLSFLINLRT 166
              L+ + L     +V+ D       +  K+ KVL +    GFS   L +  +   NL+ 
Sbjct: 104 YTWLEEIRL---KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 167 LSLHDCRRFGD-----LPLIGELSLLEILDLS--KSDVSEIPISF--GRLSHLRLLDLTD 217
           L L +                  + L  L++S   S+VS   +     R  +L+ L L  
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 218 CDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLH 274
              LE +   +L R  +LEEL                   +   + L     L  L 
Sbjct: 221 AVPLEKL-ATLLQRAPQLEELGTGGYTAE-----VRPDVYSGLSVALSGCKELRCLS 271

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 34/143 (23%), Positives = 49/143 (34%), Gaps = 13/143 (9%)

Query: 114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI----NLRTL-S 168
           CP L++L L     L       Q    L+ L  GG      P   S L       + L  
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 169 LHDCRRFGD--LPLIGE-LSLLEILDLSKSDVSEIPIS--FGRLSHLRLLDLTDC-DDLE 222
           L          LP +    S L  L+LS + V    +     +   L+ L + D  +D  
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG 329

Query: 223 LIPRGVLSRLRKLEELYMSRSFH 245
           L    + S  + L EL +  S  
Sbjct: 330 L--EVLASTCKDLRELRVFPSEP 350

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 33/117 (28%)

Query: 188 EILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS----RS 243
             L L  +  + +P       HL L+DL++ + +  +     S + +L  L +S    R 
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 244 FHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH------IPNGKIMSSDMSFQNLTS 294
                F+G               L  L  L +H      +P G       +F +L++
Sbjct: 93  IPPRTFDG---------------LKSLRLLSLHGNDISVVPEG-------AFNDLSA 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.77
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.83
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	94.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.9

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=4.4e-25  Score=202.80  Aligned_cols=268  Identities=20%  Similarity=0.227  Sum_probs=177.4

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS  159 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  159 (397)
                      +..+..++....++++++|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++|.+..++. +.
T Consensus        53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~  129 (347)
T 4fmz_A           53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LA  129 (347)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred             CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hc
Confidence            45556667777888999999999988887775588899999999988777653  6889999999999988877766 78


Q ss_pred             CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708          160 FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY  239 (397)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  239 (397)
                      .+++|++|++++|.....++.+..+++|++|++++|.+..++. +..+++|++|++++ +.+..++.  +..+++|+.|+
T Consensus       130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~  205 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISP--LASLTSLHYFT  205 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGG--GGGCTTCCEEE
T ss_pred             cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-Cccccccc--ccCCCccceee
Confidence            8888999999888776777778888888888888888877665 77888888888888 45566665  66777777777


Q ss_pred             eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhc
Q 047708          240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKF  318 (397)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~  318 (397)
                      +++|.+.+.             ..+..+++|++|++++|....++. +. +++|+.|+++.|.....      ..+..  
T Consensus       206 l~~n~l~~~-------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~~~~--  263 (347)
T 4fmz_A          206 AYVNQITDI-------------TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI------NAVKD--  263 (347)
T ss_dssp             CCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC------GGGTT--
T ss_pred             cccCCCCCC-------------chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC------hhHhc--
Confidence            777766541             114555666666666666555554 33 56666666655543211      12222  


Q ss_pred             ccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          319 KKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       319 ~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                         +++|+.|++ ++.++.+| .+..+ ++|++|++++|. +...... ..+.+++|++|++++|+
T Consensus       264 ---l~~L~~L~l~~n~l~~~~-~~~~l-~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          264 ---LTKLKMLNVGSNQISDIS-VLNNL-SQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             ---CTTCCEEECCSSCCCCCG-GGGGC-TTCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECCSSS
T ss_pred             ---CCCcCEEEccCCccCCCh-hhcCC-CCCCEEECcCCc-CCCcChh-HhhccccCCEEEccCCc
Confidence               455555555 44444443 22222 455555555542 2222111 11245555555555553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=7.1e-25  Score=210.19  Aligned_cols=210  Identities=25%  Similarity=0.222  Sum_probs=152.3

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS  156 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  156 (397)
                      .+..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..+.+..|.++++|++|++++|.+..+|.
T Consensus        19 ~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           19 HRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             CSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence            34445555553 34678899999998888643 33 78899999999988777766667889999999999988877765


Q ss_pred             -hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          157 -SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       157 -~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                       .+.++++|++|++++|.+....+ .+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.++...++.++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~  176 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLH  176 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCT
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccC
Confidence             46788999999999988877665 788889999999998888855 45788888999999988 566777776688888


Q ss_pred             CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecC
Q 047708          234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGD  301 (397)
Q Consensus       234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~  301 (397)
                      +|+.|++.+|.+.+..           ...+..+++|++|++++|. ...++.... ..+|+.|+++.|.
T Consensus       177 ~L~~L~l~~n~i~~~~-----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          177 GLIVLRLRHLNINAIR-----------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             TCCEEEEESCCCCEEC-----------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             CCcEEeCCCCcCcEeC-----------hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence            8888888888876522           2344555556666655544 333333333 3455555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=2e-24  Score=198.36  Aligned_cols=268  Identities=17%  Similarity=0.210  Sum_probs=221.2

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL  158 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  158 (397)
                      .++.+..++....+++|++|++++|.+..++...++++|++|++++|.+..++.  +..+++|++|++++|.....+..+
T Consensus        74 ~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~  151 (347)
T 4fmz_A           74 NGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPL  151 (347)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred             cCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccch
Confidence            345566666678899999999999999998766699999999999999888876  789999999999999764455569


Q ss_pred             cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEE
Q 047708          159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL  238 (397)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  238 (397)
                      ..+++|++|++++|.+.... .+..+++|++|++++|.+..++. +..+++|++|++++ +.+..++.  ++.+++|++|
T Consensus       152 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~~~~L~~L  226 (347)
T 4fmz_A          152 SNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYV-NQITDITP--VANMTRLNSL  226 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GGGCTTCCEE
T ss_pred             hhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCccccccc-ccCCCccceeeccc-CCCCCCch--hhcCCcCCEE
Confidence            99999999999999885544 48899999999999999998876 88999999999999 56666665  7899999999


Q ss_pred             EeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708          239 YMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK  317 (397)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~  317 (397)
                      ++++|.+..             ...+..+++|++|++++|.+..++ .+. +++|+.|+++.|.....      ..+.. 
T Consensus       227 ~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~------~~~~~-  285 (347)
T 4fmz_A          227 KIGNNKITD-------------LSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI------SVLNN-  285 (347)
T ss_dssp             ECCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC------GGGGG-
T ss_pred             EccCCccCC-------------CcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC------hhhcC-
Confidence            999999875             122788999999999999988775 455 99999999998865432      23334 


Q ss_pred             cccccccccceec-cccccc-chHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          318 FKKRCSRAMGLSQ-DMRISG-VHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       318 ~~~~~~~L~~L~l-~~~~~~-lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                          +++|+.|++ ++.+.. .|..+..+ ++|++|++++|. ++..+.   ...+++|++|++++|+
T Consensus       286 ----l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          286 ----LSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             ----CTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             ----CCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence                889999999 666664 44556666 699999999965 666652   4589999999999985

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=1e-24  Score=203.56  Aligned_cols=271  Identities=17%  Similarity=0.102  Sum_probs=148.8

Q ss_pred             cccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEE
Q 047708           92 FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLS  168 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~  168 (397)
                      +++++.+++.++.+..+|...  .+++|+.|++++|.+..++...|..+++|++|++++|.+..++ ..++++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            444555555555555544432  4455555555555544444434455555555555555553332 2344555555555


Q ss_pred             ccCccCcCCCcc-ccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCC-----------
Q 047708          169 LHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL-----------  235 (397)
Q Consensus       169 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-----------  235 (397)
                      +++|.+...++. +..+++|++|++++|.++.++ ..+..+++|++|++++ +.++.++   ++.+++|           
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccccc
Confidence            555554433332 345555555555555554332 2344555555555554 2333332   1222333           


Q ss_pred             --------CEEEeecccccccccCC---------CccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEE
Q 047708          236 --------EELYMSRSFHHWQFEGE---------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFS  296 (397)
Q Consensus       236 --------~~L~l~~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~  296 (397)
                              ++|++++|.+... +..         .....-.....+..+++|++|++++|.+..+ |..+. +++|+.|+
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEE-ECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             ccCCCCcceEEECCCCeeeec-cccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence                    3333333322211 000         0000001124567788888888888886555 55566 88888888


Q ss_pred             EEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCcc
Q 047708          297 ITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELM  375 (397)
Q Consensus       297 l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~  375 (397)
                      ++.|.....  +   ...     ..+++|+.|++ ++.+..+|.++..+ ++|++|+++++ .++.++    ...+++|+
T Consensus       279 L~~n~l~~~--~---~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~l-~~L~~L~L~~N-~i~~~~----~~~~~~L~  342 (390)
T 3o6n_A          279 ISNNRLVAL--N---LYG-----QPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHN-SIVTLK----LSTHHTLK  342 (390)
T ss_dssp             CCSSCCCEE--E---CSS-----SCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSS-CCCCCC----CCTTCCCS
T ss_pred             CCCCcCccc--C---ccc-----CCCCCCCEEECCCCcceecCcccccc-CcCCEEECCCC-ccceeC----chhhccCC
Confidence            887765421  1   011     23788999999 77888899888877 69999999984 455543    56889999


Q ss_pred             EEEEeccC
Q 047708          376 FLGIFGCN  383 (397)
Q Consensus       376 ~L~i~~c~  383 (397)
                      .|++++++
T Consensus       343 ~L~l~~N~  350 (390)
T 3o6n_A          343 NLTLSHND  350 (390)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence            99999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=8.7e-25  Score=208.31  Aligned_cols=291  Identities=20%  Similarity=0.218  Sum_probs=201.2

Q ss_pred             ecCCccCCCCCccccccCceEEccCCCcccC-CCcC-CCCCccEEEccCCCC-cccChhhhcCCCcccEEEcCCCCCCCC
Q 047708           78 KAGVELKDWPSINKFEDLTGISLMFNDIHEV-PDEL-ECPKLQALLLQENSL-LVIPDRFFQGMKDLKVLDMGGIRGFSL  154 (397)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~l  154 (397)
                      ..+..+..+|.  -.+++++|++++|.+..+ +..+ ++++|+.|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus        17 c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~   94 (455)
T 3v47_A           17 CINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL   94 (455)
T ss_dssp             CCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred             cCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence            34455666666  347899999999998885 4444 889999999999985 467666788999999999999998655


Q ss_pred             -ChhhcCcccCcEEEccCccCcCCCc---cccCCCCCCEEEccCCCCCcc-chh-hhCCCCCCeeecCCCCCCCCCchhh
Q 047708          155 -PSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSEI-PIS-FGRLSHLRLLDLTDCDDLELIPRGV  228 (397)
Q Consensus       155 -~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~  228 (397)
                       |..++++++|++|++++|.+.+..+   .+..+++|++|++++|.+..+ |.. +.++++|++|++++|. +..++...
T Consensus        95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~  173 (455)
T 3v47_A           95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEED  173 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTT
T ss_pred             ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhh
Confidence             7788999999999999998866433   388899999999999988866 544 7889999999998844 43333222


Q ss_pred             hc----------------------------------CCCCCCEEEeecccccccccCC----------------------
Q 047708          229 LS----------------------------------RLRKLEELYMSRSFHHWQFEGE----------------------  252 (397)
Q Consensus       229 ~~----------------------------------~l~~L~~L~l~~~~~~~~~~~~----------------------  252 (397)
                      +.                                  .+++|++|++++|.+.+..+..                      
T Consensus       174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  253 (455)
T 3v47_A          174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG  253 (455)
T ss_dssp             SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred             hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence            32                                  2356777888777665422210                      


Q ss_pred             ------------------------------CccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEec
Q 047708          253 ------------------------------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIG  300 (397)
Q Consensus       253 ------------------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~  300 (397)
                                                    .+......+..++.+++|++|++++|.+..+ |..+. +++|+.|+++.|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence                                          0000112234466777888888888876555 34566 788888888777


Q ss_pred             CcccchhhhHHHHhhhhcccccccccceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEE
Q 047708          301 DLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLG  378 (397)
Q Consensus       301 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~  378 (397)
                      ..... .+   ..+..     +++|+.|++ ++.++.+ |.++..+ ++|++|+|++ +.++.++.. ....+++|++|+
T Consensus       334 ~l~~~-~~---~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~  401 (455)
T 3v47_A          334 FLGSI-DS---RMFEN-----LDKLEVLDLSYNHIRALGDQSFLGL-PNLKELALDT-NQLKSVPDG-IFDRLTSLQKIW  401 (455)
T ss_dssp             CCCEE-CG---GGGTT-----CTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCS-SCCSCCCTT-TTTTCTTCCEEE
T ss_pred             ccCCc-Ch---hHhcC-----cccCCEEECCCCcccccChhhcccc-ccccEEECCC-CccccCCHh-HhccCCcccEEE
Confidence            54321 11   22333     777888888 6666655 5556665 5888888887 566666522 235778888888


Q ss_pred             EeccC
Q 047708          379 IFGCN  383 (397)
Q Consensus       379 i~~c~  383 (397)
                      +++|+
T Consensus       402 l~~N~  406 (455)
T 3v47_A          402 LHTNP  406 (455)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            88765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=5.4e-25  Score=211.01  Aligned_cols=272  Identities=21%  Similarity=0.181  Sum_probs=221.9

Q ss_pred             CccccccCceEEccCCCcccC-CCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccC
Q 047708           88 SINKFEDLTGISLMFNDIHEV-PDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINL  164 (397)
Q Consensus        88 ~~~~~~~l~~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L  164 (397)
                      ....+++|+.|++++|.+..+ +..+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..+ +..+..+++|
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            346789999999999999986 4445 899999999999999999988889999999999999999654 6678999999


Q ss_pred             cEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708          165 RTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR  242 (397)
Q Consensus       165 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  242 (397)
                      ++|++++|.+....+ .+..+++|++|++++|.++.+|. .+..+++|+.|++++ +.+..++...+..+++|+.|++++
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES-CCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC-CcCcEeChhhcccCcccceeeCCC
Confidence            999999999877666 89999999999999999998875 688999999999999 566667766689999999999999


Q ss_pred             ccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhccc
Q 047708          243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK  320 (397)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  320 (397)
                      |...+.+           ........+|++|++++|.+..+|.. +. +++|+.|+++.|.....         +...+.
T Consensus       210 ~~~~~~~-----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~  269 (477)
T 2id5_A          210 WPYLDTM-----------TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI---------EGSMLH  269 (477)
T ss_dssp             CTTCCEE-----------CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE---------CTTSCT
T ss_pred             Ccccccc-----------CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc---------Chhhcc
Confidence            9877633           34444556899999999998888854 66 99999999998874421         112223


Q ss_pred             ccccccceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          321 RCSRAMGLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       321 ~~~~L~~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      .+++|+.|++ ++.+..+ |..+..+ ++|++|+|++ +.++.++.. ....+++|+.|++.++|
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSG-NQLTTLEES-VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTC-TTCCEEECCS-SCCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred             ccccCCEEECCCCccceECHHHhcCc-ccCCEEECCC-CcCceeCHh-HcCCCcccCEEEccCCC
Confidence            4888999999 6777655 4455555 6999999998 567776532 23578999999999876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=5.3e-25  Score=202.71  Aligned_cols=272  Identities=18%  Similarity=0.145  Sum_probs=204.3

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSL  169 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l  169 (397)
                      .++.....+.+++.++.+|... .++|+.|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCCeEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3444556777888888887755 25889999999998888876778899999999999988665 456888999999999


Q ss_pred             cCccCcCCCc-cccCCCCCCEEEccCCCCCccch--hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          170 HDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI--SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++|.+...++ .++.+++|++|++++|.++.+|.  .+..+++|++|++++|+.++.++...++.+++|++|++++|.+.
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            9998877666 48889999999999998888876  68889999999999876777776666888999999999998887


Q ss_pred             ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc--CCCccEEEEEecCcccchhhhHHHHhhhhccccccc
Q 047708          247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS--FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSR  324 (397)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  324 (397)
                      +           ..+..++.+++|++|++++|....++..+.  +++|+.|+++.|........ .+.....     ...
T Consensus       188 ~-----------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~~~-----~~~  250 (353)
T 2z80_A          188 S-----------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-ELSTGET-----NSL  250 (353)
T ss_dssp             E-----------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------C-----CCC
T ss_pred             c-----------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc-ccccccc-----cch
Confidence            6           335677888899999999998877776643  88999999998765432111 0111111     333


Q ss_pred             ccceec------ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          325 AMGLSQ------DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       325 L~~L~l------~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      ++.+++      +..+..+|.++..+ ++|++|++++ +.++.++... .+.+++|++|++++|+
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~-N~l~~i~~~~-~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQI-SGLLELEFSR-NQLKSVPDGI-FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTC-TTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             hhccccccccccCcchhhhHHHHhcc-cCCCEEECCC-CCCCccCHHH-HhcCCCCCEEEeeCCC
Confidence            444444      33344678777776 6999999998 5677766332 3578999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2.1e-24  Score=196.37  Aligned_cols=200  Identities=22%  Similarity=0.292  Sum_probs=162.9

Q ss_pred             cccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           92 FEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      ..+++.|+++++.+..+|..+ ++++|+.|++++|.+..+|.. ++++++|++|++++|.+..+|..++.+++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            367888999999888888766 788999999999887777765 488889999999999888888888889999999999


Q ss_pred             CccCcCCCc-ccc---------CCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708          171 DCRRFGDLP-LIG---------ELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM  240 (397)
Q Consensus       171 ~~~~~~~~~-~~~---------~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  240 (397)
                      +|...+..| .+.         .+++|++|++++|.++.+|..++++++|++|++++ +.++.+|.. ++.+++|++|++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L~L  236 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEELDL  236 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEEEC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEEEC
Confidence            887766655 444         48889999999888888888888899999999988 556677776 888889999999


Q ss_pred             ecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecCcccc
Q 047708          241 SRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGDLAAG  305 (397)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~  305 (397)
                      ++|.+.+           .++..++.+++|++|++++|. .+.+|..+. +++|+.|+++.|.....
T Consensus       237 s~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          237 RGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             TTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             cCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            8888877           345667788889999998876 677777777 88888888887765433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.1e-24  Score=211.15  Aligned_cols=269  Identities=17%  Similarity=0.081  Sum_probs=150.8

Q ss_pred             ccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEE
Q 047708           91 KFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTL  167 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L  167 (397)
                      .+++|+.|++++|.+..++. .+ .+++|+.|++++|.+..+++..|+++++|++|++++|.+..+|.. ++.+++|++|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            34455555555555554332 22 455555555555555555544455555555555555555444443 2455555555


Q ss_pred             EccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          168 SLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       168 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++++|.+...++ .++.+++|++|++++|.++.++  ++.+++|++|++++| .++.+     ...++|+.|++++|.+.
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n-~l~~l-----~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTL-----AIPIAVEELDASHNSIN  224 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS-CCSEE-----ECCTTCSEEECCSSCCC
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC-ccccc-----cCCchhheeeccCCccc
Confidence            555555544444 4555555555555555554442  233344444444431 11111     11222333333333322


Q ss_pred             ccccCC--------CccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhh
Q 047708          247 WQFEGE--------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSR  316 (397)
Q Consensus       247 ~~~~~~--------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~  316 (397)
                      ...+..        .+...-..+..+..+++|+.|++++|.+..+ |..+. +++|+.|+++.|.....  +   ...  
T Consensus       225 ~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~---~~~--  297 (597)
T 3oja_B          225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--N---LYG--  297 (597)
T ss_dssp             EEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--E---CSS--
T ss_pred             ccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--C---ccc--
Confidence            110000        0000001135577788899999999886555 55677 88999999887765421  1   011  


Q ss_pred             hcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          317 KFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       317 ~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                         ..+++|+.|++ ++.+..+|.++..+ ++|++|+|++|. +..+    ....+++|+.|++++|+
T Consensus       298 ---~~l~~L~~L~Ls~N~l~~i~~~~~~l-~~L~~L~L~~N~-l~~~----~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          298 ---QPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS-IVTL----KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             ---SCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSSC-CCCC----CCCTTCCCSEEECCSSC
T ss_pred             ---ccCCCCcEEECCCCCCCccCcccccC-CCCCEEECCCCC-CCCc----ChhhcCCCCEEEeeCCC
Confidence               23788999999 88888999988877 699999999854 5544    35688999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=2.5e-24  Score=217.75  Aligned_cols=153  Identities=27%  Similarity=0.255  Sum_probs=68.6

Q ss_pred             CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEc
Q 047708          115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDL  192 (397)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l  192 (397)
                      +.|+.|++++|.+....+..+..+++|++|++++|.+ ..+|..++.+++|++|++++|.+.+..| .+..+++|++|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            3444444444443221122234444455555554444 2344444444445555554444443333 4444444555555


Q ss_pred             cCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCC
Q 047708          193 SKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLT  271 (397)
Q Consensus       193 ~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  271 (397)
                      ++|.++ .+|..++++++|++|++++|...+.+|.. ++.+++|++|++++|.+.+           .++..++.+++|+
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~-----------~~p~~l~~l~~L~  541 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSG-----------NIPAELGDCRSLI  541 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEE-----------ECCGGGGGCTTCC
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccC-----------cCCHHHcCCCCCC
Confidence            444444 34444444444555554443333334433 4444444444444444444           2234444445555


Q ss_pred             EEEEeccC
Q 047708          272 SLHIHIPN  279 (397)
Q Consensus       272 ~L~l~~~~  279 (397)
                      .|++++|.
T Consensus       542 ~L~Ls~N~  549 (768)
T 3rgz_A          542 WLDLNTNL  549 (768)
T ss_dssp             EEECCSSE
T ss_pred             EEECCCCc
Confidence            55554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=6.7e-25  Score=221.92  Aligned_cols=255  Identities=18%  Similarity=0.189  Sum_probs=192.3

Q ss_pred             cccCceEEccCCCccc-CCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEE
Q 047708           92 FEDLTGISLMFNDIHE-VPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLS  168 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~  168 (397)
                      +++++.|++.+|.+.+ +|..+ ++++|+.|++++|.+....+..+..+++|++|++++|.+ ..+|..++.+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            6779999999998885 66666 899999999999996644444579999999999999999 47899999999999999


Q ss_pred             ccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          169 LHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       169 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      +++|.+.+..| .+..+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|.. ++.+++|+.|++++|.+.
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccC
Confidence            99999987766 8999999999999999998 88999999999999999997666678877 899999999999999999


Q ss_pred             ccccCCCccC-----------------------------------------------------------ccccccccCCC
Q 047708          247 WQFEGEEDSS-----------------------------------------------------------SNAKFIELGSL  267 (397)
Q Consensus       247 ~~~~~~~~~~-----------------------------------------------------------~~~~~~~l~~l  267 (397)
                      +.+|......                                                           ....+..++.+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            8777542110                                                           01122334556


Q ss_pred             CCCCEEEEeccCC-CCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccc-cchHHHHH
Q 047708          268 SRLTSLHIHIPNG-KIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRIS-GVHSWIKN  343 (397)
Q Consensus       268 ~~L~~L~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~-~lp~~~~~  343 (397)
                      ++|+.|++++|.+ +.+|..++ +++|+.|+++.|......+    ..+..     +.+|+.|++ .+.++ .+|..+..
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip----~~l~~-----L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP----DEVGD-----LRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC----GGGGG-----CTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC----hHHhC-----CCCCCEEECCCCcccCcCChHHhC
Confidence            6677777777763 45666666 7777777776665432221    23333     556666666 44443 56665555


Q ss_pred             HHhhccceecccCC
Q 047708          344 LLLRSEILALVDVN  357 (397)
Q Consensus       344 ~~~~L~~L~l~~c~  357 (397)
                      + ++|++|+|+++.
T Consensus       703 l-~~L~~L~ls~N~  715 (768)
T 3rgz_A          703 L-TMLTEIDLSNNN  715 (768)
T ss_dssp             C-CCCSEEECCSSE
T ss_pred             C-CCCCEEECcCCc
Confidence            5 466666666643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=1.5e-25  Score=221.87  Aligned_cols=208  Identities=14%  Similarity=0.141  Sum_probs=115.9

Q ss_pred             CCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCcc-CcC-CCc-cccCC------CCCCEEEccCCCCCccch--hh
Q 047708          137 GMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCR-RFG-DLP-LIGEL------SLLEILDLSKSDVSEIPI--SF  204 (397)
Q Consensus       137 ~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~-~~~-~~~-~~~~l------~~L~~L~l~~~~~~~lp~--~i  204 (397)
                      ++++|++|++++|.+ ..+|..++++++|++|++++|. +.+ ..| .++.+      ++|++|++++|.++.+|.  .+
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l  326 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL  326 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence            455555555555544 4445555555555555555554 433 222 33333      555555555555555554  55


Q ss_pred             hCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCC-CCEEEEeccCCCCC
Q 047708          205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSR-LTSLHIHIPNGKIM  283 (397)
Q Consensus       205 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~  283 (397)
                      +++++|++|++++|...+.+| . ++.+++|++|++++|.+.            .++..+..+++ |++|++++|.+..+
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~l  392 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT------------EIPANFCGFTEQVENLSFAHNKLKYI  392 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE------------ECCTTSEEECTTCCEEECCSSCCSSC
T ss_pred             ccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc------------cccHhhhhhcccCcEEEccCCcCccc
Confidence            555555555555532222444 2 455555555555555443            34566777888 99999999998888


Q ss_pred             CCccc-C--CCccEEEEEecCcccchhhhHHHHhhh--hcccccccccceec-ccccccchHHHHHHHhhccceecccCC
Q 047708          284 SSDMS-F--QNLTSFSITIGDLAAGFISAAIEVFSR--KFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN  357 (397)
Q Consensus       284 ~~~~~-~--~~L~~L~l~~~~~~~~~~~~~~~~l~~--~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~  357 (397)
                      |..+. .  ++|+.|+++.|........    .++.  .......+|+.|++ ++.++.+|..+....++|++|++++ +
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N  467 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGK----NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-N  467 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTC----SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-S
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchh----hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-C
Confidence            88766 3  4888998887765422111    1210  00002456777777 6667777776665335677777765 3


Q ss_pred             Chhhhh
Q 047708          358 DLENIV  363 (397)
Q Consensus       358 ~l~~l~  363 (397)
                      .++.++
T Consensus       468 ~l~~i~  473 (636)
T 4eco_A          468 MLTEIP  473 (636)
T ss_dssp             CCSBCC
T ss_pred             CCCCcC
Confidence            344443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=2.3e-23  Score=198.91  Aligned_cols=278  Identities=19%  Similarity=0.221  Sum_probs=151.9

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS  159 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  159 (397)
                      +..+..++....++++++|++++|.+..++...++++|+.|++++|.+..+++  +.++++|++|++++|.+..++. +.
T Consensus        55 ~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~  131 (466)
T 1o6v_A           55 RLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LK  131 (466)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred             CCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-Hc
Confidence            33455566666778888888888888877664478888888888888776665  6788888888888887766655 77


Q ss_pred             CcccCcEEEccCccCcCCC--------------------ccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCC
Q 047708          160 FLINLRTLSLHDCRRFGDL--------------------PLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD  219 (397)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~--------------------~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~  219 (397)
                      .+++|++|++++|.+....                    +.+..+++|++|++++|.+..++ .+..+++|++|++++| 
T Consensus       132 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-  209 (466)
T 1o6v_A          132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN-  209 (466)
T ss_dssp             TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-
T ss_pred             CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCC-
Confidence            7788888888777654321                    12344455555555555555443 2455555555555552 


Q ss_pred             CCCCCchhhhcCCCCCCEEEeecccccccccCC----------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-
Q 047708          220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE----------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-  288 (397)
Q Consensus       220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-  288 (397)
                      .+..+++  ++.+++|++|++++|.+.+. +..          .....-.....+..+++|++|++++|.+..++. +. 
T Consensus       210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~  285 (466)
T 1o6v_A          210 QISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAG  285 (466)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTT
T ss_pred             ccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccC
Confidence            3333332  34455555555555544321 000          000000001113344444455554444444433 33 


Q ss_pred             CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccc
Q 047708          289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLA  367 (397)
Q Consensus       289 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  367 (397)
                      +++|+.|+++.|.....      ..+..     +++|+.|++ ++.+..++. +..+ ++|++|++++| .+..++   .
T Consensus       286 l~~L~~L~L~~n~l~~~------~~~~~-----l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~n-~l~~~~---~  348 (466)
T 1o6v_A          286 LTALTNLELNENQLEDI------SPISN-----LKNLTYLTLYFNNISDISP-VSSL-TKLQRLFFYNN-KVSDVS---S  348 (466)
T ss_dssp             CTTCSEEECCSSCCSCC------GGGGG-----CTTCSEEECCSSCCSCCGG-GGGC-TTCCEEECCSS-CCCCCG---G
T ss_pred             CCccCeEEcCCCcccCc------hhhcC-----CCCCCEEECcCCcCCCchh-hccC-ccCCEeECCCC-ccCCch---h
Confidence            45555555554432211      01222     555666666 444544443 3333 46666666654 444443   2


Q ss_pred             cCCCCCccEEEEeccC
Q 047708          368 NDGFNELMFLGIFGCN  383 (397)
Q Consensus       368 ~~~~~~L~~L~i~~c~  383 (397)
                      ...+++|+.|++++|+
T Consensus       349 l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQ  364 (466)
T ss_dssp             GTTCTTCCEEECCSSC
T ss_pred             hccCCCCCEEeCCCCc
Confidence            3466777777777664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=3.8e-25  Score=218.92  Aligned_cols=286  Identities=17%  Similarity=0.163  Sum_probs=206.8

Q ss_pred             ccccCceEEccCCCccc-CCCcC-CCCCccEEEccCCC-Ccc--cChhhhcCC------CcccEEEcCCCCCCCCCh--h
Q 047708           91 KFEDLTGISLMFNDIHE-VPDEL-ECPKLQALLLQENS-LLV--IPDRFFQGM------KDLKVLDMGGIRGFSLPS--S  157 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~-~~~--~~~~~~~~l------~~L~~L~l~~~~~~~l~~--~  157 (397)
                      .+++|++|++++|.+.+ +|..+ ++++|+.|++++|. +..  +|..+ +.+      ++|++|++++|.+..+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhh
Confidence            78999999999998776 77766 89999999999998 764  66654 544      999999999999999998  8


Q ss_pred             hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCC-CCeeecCCCCCCCCCchhhhcCCC--C
Q 047708          158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSH-LRLLDLTDCDDLELIPRGVLSRLR--K  234 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~  234 (397)
                      ++.+++|++|++++|.+.+.+|.++.+++|++|++++|.++.+|..++.+++ |++|++++ +.++.+|.. ++.++  +
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~-~~~~~l~~  403 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKLKYIPNI-FDAKSVSV  403 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS-SCCSSCCSC-CCTTCSSC
T ss_pred             hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC-CcCcccchh-hhhcccCc
Confidence            9999999999999999985555888999999999999998899999999999 99999999 456688875 55544  8


Q ss_pred             CCEEEeecccccccccCCCc-------------------cCccccccc-cCCCCCCCEEEEeccCCCCCCCccc--CC--
Q 047708          235 LEELYMSRSFHHWQFEGEED-------------------SSSNAKFIE-LGSLSRLTSLHIHIPNGKIMSSDMS--FQ--  290 (397)
Q Consensus       235 L~~L~l~~~~~~~~~~~~~~-------------------~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~--~~--  290 (397)
                      |++|++++|.+.+.+|....                   .....++.. +..+++|++|++++|.+..+|....  ..  
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence            99999999988875543211                   001112221 2235667777777776666665533  22  


Q ss_pred             -----CccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCC------C
Q 047708          291 -----NLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN------D  358 (397)
Q Consensus       291 -----~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~------~  358 (397)
                           +|+.|+++.|... .+ +   ..+..   ..+++|+.|++ ++.++.+|.++..+ ++|++|+|+++.      -
T Consensus       484 ~~~l~~L~~L~Ls~N~l~-~l-p---~~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLT-KL-S---DDFRA---TTLPYLVGIDLSYNSFSKFPTQPLNS-STLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             CTTGGGCCEEECCSSCCC-BC-C---GGGST---TTCTTCCEEECCSSCCSSCCCGGGGC-SSCCEEECCSCBCTTCCBC
T ss_pred             ccccCCccEEECcCCcCC-cc-C---hhhhh---ccCCCcCEEECCCCCCCCcChhhhcC-CCCCEEECCCCcccccCcc
Confidence                 6777777666543 11 1   11210   13677888888 66777777777766 588888885422      2


Q ss_pred             hhhhhhccccCCCCCccEEEEeccCCceEeecC
Q 047708          359 LENIVSDLANDGFNELMFLGIFGCNEMKCLLNS  391 (397)
Q Consensus       359 l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~  391 (397)
                      ...++..  .+.+++|++|++++|. ++.+|..
T Consensus       555 ~~~~p~~--l~~l~~L~~L~Ls~N~-l~~ip~~  584 (636)
T 4eco_A          555 LREWPEG--ITLCPSLTQLQIGSND-IRKVNEK  584 (636)
T ss_dssp             CCCCCTT--GGGCSSCCEEECCSSC-CCBCCSC
T ss_pred             cccChHH--HhcCCCCCEEECCCCc-CCccCHh
Confidence            2333322  3468888888888885 4777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.1e-24  Score=219.86  Aligned_cols=276  Identities=13%  Similarity=0.114  Sum_probs=191.2

Q ss_pred             ccccccCceEEccCCCccc------------------CCCcC---CCCCccEEEccCCC-CcccChhhhcCCCcccEEEc
Q 047708           89 INKFEDLTGISLMFNDIHE------------------VPDEL---ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDM  146 (397)
Q Consensus        89 ~~~~~~l~~l~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l  146 (397)
                      +..+++|+.|++++|.+.+                  +|..+   ++++|+.|++++|. ...+|.. +.++++|++|++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L  522 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI  522 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence            4567888888888888887                  77765   57888888888887 5556644 588888888888


Q ss_pred             CCCC-CC--CCChhhcCcc-------cCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCCccchhhhCCCCCCeee
Q 047708          147 GGIR-GF--SLPSSLSFLI-------NLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD  214 (397)
Q Consensus       147 ~~~~-~~--~l~~~~~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  214 (397)
                      ++|. +.  .+|..++.+.       +|++|++++|.+...++  .++.+++|++|++++|.++.+| .++.+++|++|+
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence            8887 64  4777777666       88888888888875555  5888888888888888888777 778888888888


Q ss_pred             cCCCCCCCCCchhhhcCCCC-CCEEEeecccccccccCCCccC--------------c----cccccccC--CCCCCCEE
Q 047708          215 LTDCDDLELIPRGVLSRLRK-LEELYMSRSFHHWQFEGEEDSS--------------S----NAKFIELG--SLSRLTSL  273 (397)
Q Consensus       215 l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~--------------~----~~~~~~l~--~l~~L~~L  273 (397)
                      +++ +.+..+|.. +..+++ |++|++++|.+. .+|......              .    ..+...+.  .+++|+.|
T Consensus       602 Ls~-N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          602 LDY-NQIEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             CCS-SCCSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             CcC-CccccchHH-HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence            888 445577766 777777 888888888776 444321100              0    01111122  23477788


Q ss_pred             EEeccCCCCCCCccc--CCCccEEEEEecCcccchhhhHHHHhhhhccc-------ccccccceec-ccccccchHHHH-
Q 047708          274 HIHIPNGKIMSSDMS--FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK-------RCSRAMGLSQ-DMRISGVHSWIK-  342 (397)
Q Consensus       274 ~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~-------~~~~L~~L~l-~~~~~~lp~~~~-  342 (397)
                      ++++|.+..+|..+.  +++|+.|+++.|... .        ++...+.       .+++|+.|++ ++.++.+|..+. 
T Consensus       679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~--------ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          679 TLSYNEIQKFPTELFATGSPISTIILSNNLMT-S--------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C--------CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             EccCCcCCccCHHHHccCCCCCEEECCCCcCC-c--------cChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence            888888777776653  778888888776543 1        1111111       1337888888 777778887776 


Q ss_pred             -HHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708          343 -NLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC  382 (397)
Q Consensus       343 -~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c  382 (397)
                       .+ ++|+.|+|++ +.+..++..+  +.+++|+.|++++|
T Consensus       750 ~~l-~~L~~L~Ls~-N~L~~lp~~l--~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          750 TTL-PYLSNMDVSY-NCFSSFPTQP--LNSSQLKAFGIRHQ  786 (876)
T ss_dssp             TTC-TTCCEEECCS-SCCSSCCCGG--GGCTTCCEEECCCC
T ss_pred             ccC-CCcCEEEeCC-CCCCccchhh--hcCCCCCEEECCCC
Confidence             55 6888888887 4566655333  47888888888763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=202.79  Aligned_cols=140  Identities=14%  Similarity=0.067  Sum_probs=80.5

Q ss_pred             cCCCCCCEEEeecccccccccCCCc------------cCcc---ccccccCCCCCCCEEEEeccCCCC-CCCc-cc-CCC
Q 047708          230 SRLRKLEELYMSRSFHHWQFEGEED------------SSSN---AKFIELGSLSRLTSLHIHIPNGKI-MSSD-MS-FQN  291 (397)
Q Consensus       230 ~~l~~L~~L~l~~~~~~~~~~~~~~------------~~~~---~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~~-~~~  291 (397)
                      +.+++|++|++++|.+.+.+|....            ....   .++..++.+++|++|++++|.+.. +|.. +. +++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            4566777777777777663332100            0000   122335556666666666666544 5543 33 566


Q ss_pred             ccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCC
Q 047708          292 LTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDG  370 (397)
Q Consensus       292 L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  370 (397)
                      |+.|+++.|........           ..+++|+.|++ ++.++.+|.++..+ ++|++|++++ +.++.++.. ....
T Consensus       401 L~~L~Ls~N~l~~~~~~-----------~l~~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~L~~-N~l~~l~~~-~~~~  466 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFR-----------CLPPRIKVLDLHSNKIKSIPKQVVKL-EALQELNVAS-NQLKSVPDG-IFDR  466 (520)
T ss_dssp             CCEEECCSSCCCGGGGG-----------SCCTTCCEEECCSSCCCCCCGGGGGC-TTCCEEECCS-SCCCCCCTT-TTTT
T ss_pred             CCEEECcCCCCCcchhh-----------hhcccCCEEECCCCcccccchhhhcC-CCCCEEECCC-CcCCccCHH-Hhcc
Confidence            66666665543321111           11257777777 66777788777655 5888888887 456666533 2346


Q ss_pred             CCCccEEEEeccC
Q 047708          371 FNELMFLGIFGCN  383 (397)
Q Consensus       371 ~~~L~~L~i~~c~  383 (397)
                      +++|++|++++|+
T Consensus       467 l~~L~~L~l~~N~  479 (520)
T 2z7x_B          467 LTSLQKIWLHTNP  479 (520)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCcccEEECcCCC
Confidence            7788888887775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=4.1e-24  Score=194.41  Aligned_cols=219  Identities=18%  Similarity=0.152  Sum_probs=127.6

Q ss_pred             CCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEcc
Q 047708          114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLS  193 (397)
Q Consensus       114 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  193 (397)
                      .++++.|++++|.+..+|..+ ..+++|++|++++|.+..+|..++.+++|++|++++|.+...++.++.+++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            356666666666666666553 4466666666666666666666666666666666666665444466666666666666


Q ss_pred             CCCC-CccchhhhC---------CCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccc
Q 047708          194 KSDV-SEIPISFGR---------LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE  263 (397)
Q Consensus       194 ~~~~-~~lp~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  263 (397)
                      +|.. ..+|..++.         +++|++|++++ +.++.+|.. ++.+++|++|++++|.+.+            ++..
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~-l~~l~~L~~L~L~~N~l~~------------l~~~  224 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPAS-IANLQNLKSLKIRNSPLSA------------LGPA  224 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGG-GGGCTTCCEEEEESSCCCC------------CCGG
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHh-hcCCCCCCEEEccCCCCCc------------Cchh
Confidence            6533 355554443         66666666666 344455554 5666666666666666553            2334


Q ss_pred             cCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHH
Q 047708          264 LGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWI  341 (397)
Q Consensus       264 l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~  341 (397)
                      ++.+++|++|++++|. .+.+|..+. +++|+.|+++.|...                               +.+|.++
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-------------------------------~~~p~~~  273 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-------------------------------LTLPLDI  273 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-------------------------------CBCCTTG
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-------------------------------hhcchhh
Confidence            5556666666666654 445555555 666666665554433                               3344444


Q ss_pred             HHHHhhccceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708          342 KNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFG  381 (397)
Q Consensus       342 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~  381 (397)
                      ..+ ++|++|+|++|..+..+|..+  +.+++|+.+.+..
T Consensus       274 ~~l-~~L~~L~L~~n~~~~~iP~~l--~~L~~L~~l~l~~  310 (328)
T 4fcg_A          274 HRL-TQLEKLDLRGCVNLSRLPSLI--AQLPANCIILVPP  310 (328)
T ss_dssp             GGC-TTCCEEECTTCTTCCCCCGGG--GGSCTTCEEECCG
T ss_pred             hcC-CCCCEEeCCCCCchhhccHHH--hhccCceEEeCCH
Confidence            444 466666666666666555433  3566666665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=5.5e-23  Score=202.91  Aligned_cols=290  Identities=17%  Similarity=0.114  Sum_probs=195.7

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCC-CcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-Ch
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVP-DEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PS  156 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~  156 (397)
                      +..+..+|.. -.+++++|++++|.++.++ ..+ ++++|++|++++|.+..+.+..|.++++|++|++++|.+..+ |.
T Consensus        21 ~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   99 (606)
T 3t6q_A           21 NLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET   99 (606)
T ss_dssp             TSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred             CCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh
Confidence            4445555543 2457899999999998864 344 889999999999997777766788999999999999988554 67


Q ss_pred             hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCC
Q 047708          157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRK  234 (397)
Q Consensus       157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  234 (397)
                      .++++++|++|++++|.+....+ .++.+++|++|++++|.+..++ ..+..+++|++|++++ +.++.+++..++.+++
T Consensus       100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~  178 (606)
T 3t6q_A          100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQ  178 (606)
T ss_dssp             TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTT
T ss_pred             hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcc
Confidence            88899999999999998877644 7888999999999999888652 3444588999999988 5666666555888888


Q ss_pred             CC--EEEeecccccccccCCCcc---------------------------------------------------------
Q 047708          235 LE--ELYMSRSFHHWQFEGEEDS---------------------------------------------------------  255 (397)
Q Consensus       235 L~--~L~l~~~~~~~~~~~~~~~---------------------------------------------------------  255 (397)
                      |+  +|++++|.+.+..+.....                                                         
T Consensus       179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~  258 (606)
T 3t6q_A          179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES  258 (606)
T ss_dssp             CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred             cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence            88  8888888776644322110                                                         


Q ss_pred             -------CccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccc
Q 047708          256 -------SSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMG  327 (397)
Q Consensus       256 -------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~  327 (397)
                             ........++.+++|++|++++|.+..+|..+. +++|++|+++.|...... +   ..+..     +++|+.
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~---~~~~~-----l~~L~~  329 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-Q---ISASN-----FPSLTH  329 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-G---GCGGG-----CTTCSE
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-h---hhhhc-----cCcCCE
Confidence                   000112236778899999999999889998888 899999999877644221 1   12222     556666


Q ss_pred             eec-ccccc-cchHH-HHHHHhhccceecccCCChhhhhh-ccccCCCCCccEEEEecc
Q 047708          328 LSQ-DMRIS-GVHSW-IKNLLLRSEILALVDVNDLENIVS-DLANDGFNELMFLGIFGC  382 (397)
Q Consensus       328 L~l-~~~~~-~lp~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~i~~c  382 (397)
                      |++ ++.+. .+|.. +..+ ++|++|+++++ .+..... ....+.+++|++|++++|
T Consensus       330 L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENL-ENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN  386 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTC-TTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred             EECCCCCcccccchhhhhcc-CcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence            666 33322 33322 3333 46666666653 2322210 112234555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=5.7e-23  Score=202.82  Aligned_cols=146  Identities=24%  Similarity=0.286  Sum_probs=120.3

Q ss_pred             ecCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-
Q 047708           78 KAGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-  154 (397)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-  154 (397)
                      ..+..+..+|.. -.+++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..+ 
T Consensus        18 c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           18 CMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             CTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred             ccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence            445556666664 34789999999999988665 33 889999999999998888777789999999999999998666 


Q ss_pred             ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCc
Q 047708          155 PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIP  225 (397)
Q Consensus       155 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~  225 (397)
                      |..++++++|++|++++|.+...++ .++.+++|++|++++|.+.  .+|..++++++|++|++++| .++.++
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~  169 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT  169 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEEC
T ss_pred             hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecC
Confidence            7789999999999999999877775 7899999999999999887  57889999999999999984 444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=3e-24  Score=216.74  Aligned_cols=287  Identities=17%  Similarity=0.146  Sum_probs=224.5

Q ss_pred             ccccCceEEccCCCccc-CCCcC-CCCCccEEEccCCC-Ccc--cChhh------hcCCCcccEEEcCCCCCCCCCh--h
Q 047708           91 KFEDLTGISLMFNDIHE-VPDEL-ECPKLQALLLQENS-LLV--IPDRF------FQGMKDLKVLDMGGIRGFSLPS--S  157 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~-~~~--~~~~~------~~~l~~L~~L~l~~~~~~~l~~--~  157 (397)
                      .+++|+.|++++|.+.. +|..+ ++++|+.|++++|. +..  +|..+      +..+++|++|++++|.+..+|.  .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            78999999999998766 77666 89999999999998 664  66543      2345599999999999999998  9


Q ss_pred             hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCC-CCeeecCCCCCCCCCchhhhcCCC--C
Q 047708          158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSH-LRLLDLTDCDDLELIPRGVLSRLR--K  234 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~  234 (397)
                      ++++++|++|++++|.+. .+|.++.+++|+.|++++|.+..+|..+..+++ |++|++++ +.++.+|.. ++.++  +
T Consensus       569 l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~-~~~~~~~~  645 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH-NKLKYIPNI-FNAKSVYV  645 (876)
T ss_dssp             HTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS-SCCCSCCSC-CCTTCSSC
T ss_pred             hhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC-CCCCcCchh-hhccccCC
Confidence            999999999999999987 555999999999999999999999999999999 99999999 456688865 66554  4


Q ss_pred             CCEEEeecccccccccCCC-----------------ccCcccccccc-CCCCCCCEEEEeccCCCCCCCccc-C------
Q 047708          235 LEELYMSRSFHHWQFEGEE-----------------DSSSNAKFIEL-GSLSRLTSLHIHIPNGKIMSSDMS-F------  289 (397)
Q Consensus       235 L~~L~l~~~~~~~~~~~~~-----------------~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~-~------  289 (397)
                      |+.|++++|.+.+.+|...                 ......++..+ ..+++|+.|++++|.+..+|..+. .      
T Consensus       646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~  725 (876)
T 4ecn_A          646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK  725 (876)
T ss_dssp             EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred             CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence            9999999998877654221                 11111233333 368999999999999888887754 2      


Q ss_pred             --CCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCC------Chh
Q 047708          290 --QNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN------DLE  360 (397)
Q Consensus       290 --~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~------~l~  360 (397)
                        ++|+.|+++.|... .. +   ..+..   ..+++|+.|++ ++.+..+|..+..+ ++|+.|+|+++.      -..
T Consensus       726 nl~~L~~L~Ls~N~L~-~l-p---~~l~~---~~l~~L~~L~Ls~N~L~~lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~  796 (876)
T 4ecn_A          726 NTYLLTTIDLRFNKLT-SL-S---DDFRA---TTLPYLSNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNRILR  796 (876)
T ss_dssp             TGGGCCEEECCSSCCC-CC-C---GGGST---TTCTTCCEEECCSSCCSSCCCGGGGC-TTCCEEECCCCBCTTCCBCCC
T ss_pred             ccCCccEEECCCCCCc-cc-h---HHhhh---ccCCCcCEEEeCCCCCCccchhhhcC-CCCCEEECCCCCCcccccccc
Confidence              29999999988654 21 1   12220   23789999999 88888899888877 699999998733      233


Q ss_pred             hhhhccccCCCCCccEEEEeccCCceEeecCC
Q 047708          361 NIVSDLANDGFNELMFLGIFGCNEMKCLLNSL  392 (397)
Q Consensus       361 ~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~~  392 (397)
                      .++..  .+.+++|+.|++++|. +..+|...
T Consensus       797 ~ip~~--l~~L~~L~~L~Ls~N~-L~~Ip~~l  825 (876)
T 4ecn_A          797 QWPTG--ITTCPSLIQLQIGSND-IRKVDEKL  825 (876)
T ss_dssp             CCCTT--GGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred             cChHH--HhcCCCCCEEECCCCC-CCccCHhh
Confidence            33422  3479999999999995 58888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.6e-23  Score=198.88  Aligned_cols=244  Identities=15%  Similarity=0.116  Sum_probs=125.9

Q ss_pred             cCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcc
Q 047708           83 LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI  162 (397)
Q Consensus        83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  162 (397)
                      +...+....++++++|++++|.+.+++ ...+++|+.|++++|.+..++   ++.+++|++|++++|.+..+|  ++.++
T Consensus        54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~  127 (457)
T 3bz5_A           54 ITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNP  127 (457)
T ss_dssp             CCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred             cccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence            333344444555555555555555543 224555555555555544443   345555555555555554443  45555


Q ss_pred             cCcEEEccCccCcCCCccccCCCCCCEEEccCC-CCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEee
Q 047708          163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKS-DVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS  241 (397)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  241 (397)
                      +|++|++++|.+...  .++.+++|++|++++| .+..+  .++.+++|++|++++ +.++.+|   ++.+++|+.|+++
T Consensus       128 ~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~  199 (457)
T 3bz5_A          128 LLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCD  199 (457)
T ss_dssp             TCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECC
T ss_pred             cCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECc
Confidence            555555555554432  2445555555555555 23333  244555555555555 3344444   4455555566555


Q ss_pred             cccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh--c
Q 047708          242 RSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK--F  318 (397)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~--~  318 (397)
                      +|.+.+            +  .++.+++|+.|++++|++..+|  +. +++|+.|+++.|......+    ..++..  .
T Consensus       200 ~N~l~~------------~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~----~~l~~L~~L  259 (457)
T 3bz5_A          200 TNNITK------------L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDV----STLSKLTTL  259 (457)
T ss_dssp             SSCCSC------------C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC----TTCTTCCEE
T ss_pred             CCcCCe------------e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCH----HHCCCCCEE
Confidence            555543            1  3666777888888887776666  55 7778888877765432211    111110  0


Q ss_pred             ccccccccceec--ccccccchHHHHHHHhhccceecccCCChhhhh
Q 047708          319 KKRCSRAMGLSQ--DMRISGVHSWIKNLLLRSEILALVDVNDLENIV  363 (397)
Q Consensus       319 ~~~~~~L~~L~l--~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~  363 (397)
                      .....+++.|++  +...+.+|.  ..+ ++|+.|++++|..+..++
T Consensus       260 ~l~~n~L~~L~l~~n~~~~~~~~--~~l-~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          260 HCIQTDLLEIDLTHNTQLIYFQA--EGC-RKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             ECTTCCCSCCCCTTCTTCCEEEC--TTC-TTCCCCCCTTCTTCCEEE
T ss_pred             eccCCCCCEEECCCCccCCcccc--ccc-ccCCEEECCCCcccceec
Confidence            001113445555  222344552  223 577888888777665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=7.8e-23  Score=195.26  Aligned_cols=282  Identities=19%  Similarity=0.240  Sum_probs=173.2

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh---
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS---  156 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~---  156 (397)
                      ++.+..++....+++|+.|++++|.+..++...++++|+.|++++|.+..++.  +..+++|++|++++|.+..++.   
T Consensus        77 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~  154 (466)
T 1o6v_A           77 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG  154 (466)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTT
T ss_pred             CCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhcc
Confidence            34444444455667777777777776665554466777777777766555554  4566666666666555433221   


Q ss_pred             -----------------hhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCC
Q 047708          157 -----------------SLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD  219 (397)
Q Consensus       157 -----------------~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~  219 (397)
                                       .+.++++|++|++++|.+.. .+.+..+++|++|++++|.+..++. ++.+++|++|++++ +
T Consensus       155 l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-n  231 (466)
T 1o6v_A          155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNG-N  231 (466)
T ss_dssp             CTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCS-S
T ss_pred             CCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCC-C
Confidence                             24455566666666665432 2345556666666666665554433 44555555555555 2


Q ss_pred             CCCCCchhhhcCCCCCCEEEeecccccccccCC----------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-
Q 047708          220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE----------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-  288 (397)
Q Consensus       220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-  288 (397)
                      .++.++.  +..+++|++|++++|.+.+..+..          .+..... ...+..+++|+.|++++|.+..++. +. 
T Consensus       232 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~  307 (466)
T 1o6v_A          232 QLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP-ISN  307 (466)
T ss_dssp             CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCSCCGG-GGG
T ss_pred             Ccccchh--hhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCcccCchh-hcC
Confidence            3333332  444555555555554443322210          0000001 2237789999999999999888776 56 


Q ss_pred             CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccc
Q 047708          289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLA  367 (397)
Q Consensus       289 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  367 (397)
                      +++|+.|+++.|......      .+..     +++|+.|++ ++.+..++ .+..+ ++|++|++++| .+..++   .
T Consensus       308 l~~L~~L~L~~n~l~~~~------~~~~-----l~~L~~L~l~~n~l~~~~-~l~~l-~~L~~L~l~~n-~l~~~~---~  370 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDIS------PVSS-----LTKLQRLFFYNNKVSDVS-SLANL-TNINWLSAGHN-QISDLT---P  370 (466)
T ss_dssp             CTTCSEEECCSSCCSCCG------GGGG-----CTTCCEEECCSSCCCCCG-GGTTC-TTCCEEECCSS-CCCBCG---G
T ss_pred             CCCCCEEECcCCcCCCch------hhcc-----CccCCEeECCCCccCCch-hhccC-CCCCEEeCCCC-ccCccc---h
Confidence            999999999988754321      1333     889999999 77777775 45555 69999999985 466554   2


Q ss_pred             cCCCCCccEEEEeccCCceEe
Q 047708          368 NDGFNELMFLGIFGCNEMKCL  388 (397)
Q Consensus       368 ~~~~~~L~~L~i~~c~~L~~i  388 (397)
                      ...+++|+.|++++|+ +..+
T Consensus       371 ~~~l~~L~~L~l~~n~-~~~~  390 (466)
T 1o6v_A          371 LANLTRITQLGLNDQA-WTNA  390 (466)
T ss_dssp             GTTCTTCCEEECCCEE-EECC
T ss_pred             hhcCCCCCEEeccCCc-ccCC
Confidence            5689999999999984 4443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=6.2e-23  Score=187.08  Aligned_cols=262  Identities=17%  Similarity=0.184  Sum_probs=136.2

Q ss_pred             cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCc
Q 047708           94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDC  172 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~  172 (397)
                      +++.++++++.+..+|... .+.++.|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            4556666666555555433 24566666666665555554456666666666666666444 555666666666666666


Q ss_pred             cCcCCCccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeeccccccccc
Q 047708          173 RRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      .+...+..+.  ++|++|++++|.++.++. .+..+++|++|++++|.... ......++.+++|++|++++|.+..   
T Consensus       111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---  185 (330)
T 1xku_A          111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---  185 (330)
T ss_dssp             CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---
T ss_pred             cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---
Confidence            6544433332  566666666666664443 45566666666666632211 1222225566666666666665542   


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccce
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGL  328 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L  328 (397)
                               ++..+  .++|++|++++|.+..+ +..+. +++|+.|+++.|.......    ..+..     +++|+.|
T Consensus       186 ---------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~-----l~~L~~L  245 (330)
T 1xku_A          186 ---------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLAN-----TPHLREL  245 (330)
T ss_dssp             ---------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----TTGGG-----STTCCEE
T ss_pred             ---------CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----hhccC-----CCCCCEE
Confidence                     11111  14566666666654444 23344 5666666665554322110    12222     5556666


Q ss_pred             ec-ccccccchHHHHHHHhhccceecccCCChhhhhhcccc-----CCCCCccEEEEeccC
Q 047708          329 SQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLAN-----DGFNELMFLGIFGCN  383 (397)
Q Consensus       329 ~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-----~~~~~L~~L~i~~c~  383 (397)
                      ++ ++.+..+|.++..+ ++|++|++++ +.++.++.....     ..++.|+.|++.++|
T Consensus       246 ~L~~N~l~~lp~~l~~l-~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          246 HLNNNKLVKVPGGLADH-KYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             ECCSSCCSSCCTTTTTC-SSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ECCCCcCccCChhhccC-CCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc
Confidence            66 55555566555544 4666666665 334444321111     123556666666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=7e-23  Score=186.74  Aligned_cols=274  Identities=16%  Similarity=0.149  Sum_probs=209.2

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS  157 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  157 (397)
                      +..+..+|.. ..++++.|++++|.+..++.. + ++++|++|++++|.+..+.+..|..+++|++|++++|.+..+|..
T Consensus        40 ~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~  118 (330)
T 1xku_A           40 DLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK  118 (330)
T ss_dssp             TSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred             CCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence            3345555543 347899999999999997663 3 899999999999998888666689999999999999999888876


Q ss_pred             hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC---ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          158 LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS---EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                      +.  ++|++|++++|.+...++ .+..+++|++|++++|.+.   ..+..+..+++|++|++++ +.++.+|.. +  .+
T Consensus       119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~--~~  192 (330)
T 1xku_A          119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-L--PP  192 (330)
T ss_dssp             CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-C--CT
T ss_pred             hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCcc-c--cc
Confidence            65  799999999999877776 6899999999999999886   4567888999999999999 667778765 2  37


Q ss_pred             CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhHH
Q 047708          234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAAI  311 (397)
Q Consensus       234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~~  311 (397)
                      +|++|++++|.+.+           ..+..+..+++|++|++++|.+..++. .+. +++|+.|+++.|... . ++   
T Consensus       193 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-lp---  256 (330)
T 1xku_A          193 SLTELHLDGNKITK-----------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K-VP---  256 (330)
T ss_dssp             TCSEEECTTSCCCE-----------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S-CC---
T ss_pred             cCCEEECCCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c-CC---
Confidence            89999999998876           235678889999999999999776665 566 899999999988654 1 11   


Q ss_pred             HHhhhhcccccccccceec-ccccccchHHHHHH------HhhccceecccCCChhhhh-hccccCCCCCccEEEEecc
Q 047708          312 EVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNL------LLRSEILALVDVNDLENIV-SDLANDGFNELMFLGIFGC  382 (397)
Q Consensus       312 ~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~------~~~L~~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~i~~c  382 (397)
                      ..+..     +++|+.|++ ++.++.+|......      ..+|+.|++.+++ +..+. ......++++|+.++++++
T Consensus       257 ~~l~~-----l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          257 GGLAD-----HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTTTT-----CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             hhhcc-----CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence            23333     788999999 77787776433211      1478899999855 33321 1123356788999998876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=1.7e-23  Score=206.66  Aligned_cols=196  Identities=20%  Similarity=0.191  Sum_probs=95.2

Q ss_pred             cCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEcc
Q 047708           94 DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLH  170 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~  170 (397)
                      +++.+++.++.+..++...  .+++|+.|++++|.+..+|.. +..+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            4555555555555544332  455555555555555555543 35555555555555555433 3345555555555555


Q ss_pred             CccCcCCCc--cccCCCCCCEEEccCCCCCcc---chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708          171 DCRRFGDLP--LIGELSLLEILDLSKSDVSEI---PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       171 ~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  245 (397)
                      +|.+....+  .+..+++|++|++++|.+..+   |..++.+++|++|++++| .+..+++..++.+++|++|++++|.+
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcC
Confidence            555443222  355555555555555555533   344555555555555552 22333222355555555555555554


Q ss_pred             cccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecC
Q 047708          246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGD  301 (397)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~  301 (397)
                      .+..+          ...+..+++|++|++++|..... |..+. +++|+.|+++.|.
T Consensus       413 ~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          413 KVKDA----------QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             ECCTT----------CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             CCccc----------chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence            43110          11234444555555555543222 22333 4555555554443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=4.6e-23  Score=201.58  Aligned_cols=140  Identities=10%  Similarity=0.082  Sum_probs=81.3

Q ss_pred             cCCCCCCEEEeecccccccccCCC------------ccCc---cccccccCCCCCCCEEEEeccCCCC-CCCc-cc-CCC
Q 047708          230 SRLRKLEELYMSRSFHHWQFEGEE------------DSSS---NAKFIELGSLSRLTSLHIHIPNGKI-MSSD-MS-FQN  291 (397)
Q Consensus       230 ~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~~-~~~  291 (397)
                      +.+++|++|++++|.+.+.+|...            +...   ...+..++.+++|++|++++|.+.. +|.. +. +++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            455666777777666665332110            0000   0122345566666666666666544 5544 33 666


Q ss_pred             ccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCC
Q 047708          292 LTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDG  370 (397)
Q Consensus       292 L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  370 (397)
                      |+.|+++.|........           .-+++|+.|++ ++.++.+|.++..+ ++|++|++++ +.++.++.. ....
T Consensus       430 L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N~l~~ip~~~~~l-~~L~~L~L~~-N~l~~l~~~-~~~~  495 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNNRIMSIPKDVTHL-QALQELNVAS-NQLKSVPDG-VFDR  495 (562)
T ss_dssp             CCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSSCCCCCCTTTTSS-CCCSEEECCS-SCCCCCCTT-STTT
T ss_pred             CCEEECCCCCCCcchhh-----------hhcCcCCEEECCCCcCcccChhhcCC-CCCCEEECCC-CCCCCCCHH-HHhc
Confidence            66666666554321111           01157888888 67777788777755 5888888887 566666533 2357


Q ss_pred             CCCccEEEEeccC
Q 047708          371 FNELMFLGIFGCN  383 (397)
Q Consensus       371 ~~~L~~L~i~~c~  383 (397)
                      +++|+.|+++++|
T Consensus       496 l~~L~~L~l~~N~  508 (562)
T 3a79_B          496 LTSLQYIWLHDNP  508 (562)
T ss_dssp             CTTCCCEECCSCC
T ss_pred             CCCCCEEEecCCC
Confidence            7888888888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=3e-23  Score=189.35  Aligned_cols=264  Identities=18%  Similarity=0.179  Sum_probs=144.0

Q ss_pred             cccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708           92 FEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL  169 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  169 (397)
                      .++++.|++++|.+..++. .+ ++++|+.|++++|.+..+++..|.++++|++|++++|.+..+|..+.  ++|++|++
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence            3566666666666666433 22 66666666666666655554555666666666666666666655444  56666666


Q ss_pred             cCccCcCCCc-cccCCCCCCEEEccCCCCC---ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708          170 HDCRRFGDLP-LIGELSLLEILDLSKSDVS---EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  245 (397)
                      ++|.+...++ .+..+++|++|++++|.++   ..|..+..+ +|++|++++ +.++.+|.. +  .++|++|++++|.+
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~~-~--~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPKD-L--PETLNELHLDHNKI  205 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCSS-S--CSSCSCCBCCSSCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCcc-c--cCCCCEEECCCCcC
Confidence            6666655544 4666666666666666654   233444555 666666666 445555543 2  25666666666665


Q ss_pred             cccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccc
Q 047708          246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCS  323 (397)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~  323 (397)
                      .+           ..+..+..+++|++|++++|.+..++. .+. +++|+.|+++.|... . ++   ..+..     ++
T Consensus       206 ~~-----------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-lp---~~l~~-----l~  264 (332)
T 2ft3_A          206 QA-----------IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R-VP---AGLPD-----LK  264 (332)
T ss_dssp             CC-----------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B-CC---TTGGG-----CT
T ss_pred             Cc-----------cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e-cC---hhhhc-----Cc
Confidence            54           223455566667777777666555544 345 666777766665433 1 11   12222     55


Q ss_pred             cccceec-ccccccchHHHHH-H-----HhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          324 RAMGLSQ-DMRISGVHSWIKN-L-----LLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       324 ~L~~L~l-~~~~~~lp~~~~~-~-----~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      +|+.|++ ++.++.+|..... .     ..+|+.|++.+++-...-........+++|+.|++++|.
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            6666666 5555555432111 0     134666666664422111111223456666666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=3.9e-24  Score=193.36  Aligned_cols=196  Identities=21%  Similarity=0.268  Sum_probs=124.8

Q ss_pred             ccCceEEccCCCccc---CCCcC-CCCCccEEEccC-CCCc-ccChhhhcCCCcccEEEcCCCCCC-CCChhhcCcccCc
Q 047708           93 EDLTGISLMFNDIHE---VPDEL-ECPKLQALLLQE-NSLL-VIPDRFFQGMKDLKVLDMGGIRGF-SLPSSLSFLINLR  165 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~---~~~~~-~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~  165 (397)
                      .+++.|+++++.+.+   +|..+ ++++|++|++++ |.+. .+|.. +.++++|++|++++|.+. .+|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            456677777777663   55544 667777777774 5533 44443 467777777777777763 5666677777777


Q ss_pred             EEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCC-CCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708          166 TLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLS-HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR  242 (397)
Q Consensus       166 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  242 (397)
                      +|++++|.+....| .+..+++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. ++.++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence            77777777664444 6677777777777777766 6666777766 7777777774333345544 56665 77777777


Q ss_pred             ccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCc
Q 047708          243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDL  302 (397)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~  302 (397)
                      |.+.+           ..+..+..+++|+.|++++|.+...+..+. +++|+.|+++.|..
T Consensus       207 N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          207 NMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             SEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred             CcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence            76665           234556666777777777776544333444 66666666665554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=2.7e-23  Score=189.66  Aligned_cols=263  Identities=17%  Similarity=0.160  Sum_probs=210.0

Q ss_pred             ccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccC
Q 047708           93 EDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHD  171 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~  171 (397)
                      .+++.++++++.+..+|... .+.|+.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            36899999999999888766 47899999999998888777789999999999999999766 77899999999999999


Q ss_pred             ccCcCCCccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeecccccccc
Q 047708          172 CRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQF  249 (397)
Q Consensus       172 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~  249 (397)
                      |.+...++.+.  ++|++|++++|.++.+|. .+..+++|++|++++|.... ......++.+ +|++|++++|.+.+  
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--  186 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--  186 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--
Confidence            99876665554  899999999999998875 58899999999999954321 2333336777 99999999999875  


Q ss_pred             cCCCccCccccccccCCCCCCCEEEEeccCCCCCC-Cccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccc
Q 047708          250 EGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMG  327 (397)
Q Consensus       250 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~  327 (397)
                                ++..+  .++|++|++++|.+..++ ..+. +++|+.|+++.|...... +   ..+..     +++|+.
T Consensus       187 ----------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~---~~~~~-----l~~L~~  245 (332)
T 2ft3_A          187 ----------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-N---GSLSF-----LPTLRE  245 (332)
T ss_dssp             ----------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-T---TGGGG-----CTTCCE
T ss_pred             ----------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-h---hHhhC-----CCCCCE
Confidence                      22222  278999999999977776 4577 999999999988654321 1   13333     889999


Q ss_pred             eec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccC-----CCCCccEEEEeccCC
Q 047708          328 LSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLAND-----GFNELMFLGIFGCNE  384 (397)
Q Consensus       328 L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-----~~~~L~~L~i~~c~~  384 (397)
                      |++ ++.++.+|.++..+ ++|++|++++ +.++.++.....+     .+++|+.|++.++|-
T Consensus       246 L~L~~N~l~~lp~~l~~l-~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          246 LHLDNNKLSRVPAGLPDL-KLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             EECCSSCCCBCCTTGGGC-TTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             EECCCCcCeecChhhhcC-ccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence            999 88899999888777 6999999998 5677765332211     267899999999974

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=2.8e-23  Score=203.51  Aligned_cols=167  Identities=23%  Similarity=0.266  Sum_probs=130.8

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-  155 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-  155 (397)
                      .+..+..+|.. -.++++.|++++|.++.++.. + ++++|++|++++|.+..+++..|.++++|++|++++|.+..++ 
T Consensus        15 ~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             CSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence            34445555653 346789999999998886543 3 8899999999999988888777899999999999999886664 


Q ss_pred             hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCc--cchhhhCCCCCCeeecCCCCCCCCCchhhhcCC
Q 047708          156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSE--IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRL  232 (397)
Q Consensus       156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l  232 (397)
                      ..++++++|++|++++|.+...++ .++.+++|++|++++|.++.  +|..++++++|++|++++ +.++.++...++.+
T Consensus        94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l  172 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVL  172 (570)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHH
T ss_pred             hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccch
Confidence            678899999999999998877666 68899999999999998874  788899999999999998 45555554446666


Q ss_pred             CCC----CEEEeecccccc
Q 047708          233 RKL----EELYMSRSFHHW  247 (397)
Q Consensus       233 ~~L----~~L~l~~~~~~~  247 (397)
                      ++|    +.+++++|.+.+
T Consensus       173 ~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             HTCTTCCCEEECTTCCCCE
T ss_pred             hccchhhhhcccCCCCcee
Confidence            666    667777666544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=3.4e-23  Score=193.28  Aligned_cols=263  Identities=15%  Similarity=0.198  Sum_probs=185.6

Q ss_pred             cCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCccCcCCCc-cccCCCCCC
Q 047708          111 ELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLE  188 (397)
Q Consensus       111 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~  188 (397)
                      ...+++++.|+++++.+..+|..+|..+++|++|+++++.+..++ ..+..+++|++|++++|.+...++ .++.+++|+
T Consensus        41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            346789999999999999999999999999999999999997765 488999999999999999988877 689999999


Q ss_pred             EEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccC-----cccccc
Q 047708          189 ILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSS-----SNAKFI  262 (397)
Q Consensus       189 ~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~~~  262 (397)
                      +|++++|.++.+|.. +.++++|++|++++ +.++.+++..++.+++|++|++++|.+.+.-......-     ....+.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence            999999999999876 48999999999999 56677766668999999999999998875211000000     000000


Q ss_pred             ccCC---------------------CCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccc
Q 047708          263 ELGS---------------------LSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK  320 (397)
Q Consensus       263 ~l~~---------------------l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  320 (397)
                      .+..                     .++|+.|++++|.+...+ ++. +++|+.|+++.|...... +   ..+..    
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~---~~~~~----  270 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIM-Y---HPFVK----  270 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEE-S---GGGTT----
T ss_pred             ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcC-h---hHccc----
Confidence            1111                     234555555555554443 344 677777777766543211 1   12333    


Q ss_pred             ccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708          321 RCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL  389 (397)
Q Consensus       321 ~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~  389 (397)
                       +++|+.|++ ++.++.+|.....+ ++|++|++++| .++.++..+  +.+++|+.|++++|+ ++.++
T Consensus       271 -l~~L~~L~L~~n~l~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N~-i~~~~  334 (390)
T 3o6n_A          271 -MQRLERLYISNNRLVALNLYGQPI-PTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHNS-IVTLK  334 (390)
T ss_dssp             -CSSCCEEECCSSCCCEEECSSSCC-TTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSSC-CCCCC
T ss_pred             -cccCCEEECCCCcCcccCcccCCC-CCCCEEECCCC-cceecCccc--cccCcCCEEECCCCc-cceeC
Confidence             667777777 66666666554444 57777777764 555554332  367778888877764 44443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.4e-22  Score=192.47  Aligned_cols=144  Identities=18%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             cccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708           90 NKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL  169 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  169 (397)
                      ..+++|+.|++++|.+.+++ ..++++|+.|++++|.+..++   +..+++|++|++++|.+..++  ++.+++|++|++
T Consensus        82 ~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l  155 (457)
T 3bz5_A           82 SQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC  155 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC
T ss_pred             ccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEEC
Confidence            34444455555544444442 224444555555544444333   344445555555554444332  444444555555


Q ss_pred             cCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          170 HDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       170 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++|...+.. .++.+++|++|++++|.++.+|  ++.+++|+.|++++ +.++.++   ++.+++|++|++++|.+.
T Consensus       156 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~-N~l~~~~---l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          156 HLNKKITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDT-NNITKLD---LNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             TTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCS-SCCSCCC---CTTCTTCSEEECCSSCCS
T ss_pred             CCCCccccc-ccccCCcCCEEECCCCccceec--cccCCCCCEEECcC-CcCCeec---cccCCCCCEEECcCCccc
Confidence            444332222 3444444555555554444443  44444455555544 2333332   344444555555444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=1.6e-24  Score=195.98  Aligned_cols=246  Identities=17%  Similarity=0.159  Sum_probs=201.8

Q ss_pred             CCccEEEccCCCCc---ccChhhhcCCCcccEEEcCC-CCC-CCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCC
Q 047708          115 PKLQALLLQENSLL---VIPDRFFQGMKDLKVLDMGG-IRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLE  188 (397)
Q Consensus       115 ~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~  188 (397)
                      .+++.|++++|.+.   .+|.. +.++++|++|++++ +.+ ..+|..++.+++|++|++++|.+.+..| .+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            57999999999966   46654 69999999999995 777 5789999999999999999999985555 899999999


Q ss_pred             EEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCC-CCCEEEeecccccccccCCCccCccccccccCC
Q 047708          189 ILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR-KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS  266 (397)
Q Consensus       189 ~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  266 (397)
                      +|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.++ +|++|++++|.+.+.           .+..+..
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~-----------~~~~~~~  196 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK-----------IPPTFAN  196 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE-----------CCGGGGG
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc-----------CChHHhC
Confidence            9999999998 88999999999999999995554478877 88888 999999999999873           4566667


Q ss_pred             CCCCCEEEEeccCCC-CCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccc-cchHHHH
Q 047708          267 LSRLTSLHIHIPNGK-IMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRIS-GVHSWIK  342 (397)
Q Consensus       267 l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~-~lp~~~~  342 (397)
                      ++ |++|++++|.+. ..|..+. +++|+.|+++.|..... ++    .+..     +++|+.|++ ++.+. .+|.++.
T Consensus       197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~----~~~~-----l~~L~~L~Ls~N~l~~~~p~~l~  265 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG----KVGL-----SKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GG----GCCC-----CTTCCEEECCSSCCEECCCGGGG
T ss_pred             Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-cC----cccc-----cCCCCEEECcCCcccCcCChHHh
Confidence            76 999999999854 5666677 99999999998875422 11    2333     789999999 66676 7898888


Q ss_pred             HHHhhccceecccCCChh-hhhhccccCCCCCccEEEEeccCCceEee
Q 047708          343 NLLLRSEILALVDVNDLE-NIVSDLANDGFNELMFLGIFGCNEMKCLL  389 (397)
Q Consensus       343 ~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~L~~L~i~~c~~L~~i~  389 (397)
                      .+ ++|++|+|+++. +. .+| .  .+.+++|+.|++.+++.+...|
T Consensus       266 ~l-~~L~~L~Ls~N~-l~~~ip-~--~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          266 QL-KFLHSLNVSFNN-LCGEIP-Q--GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GC-TTCCEEECCSSE-EEEECC-C--STTGGGSCGGGTCSSSEEESTT
T ss_pred             cC-cCCCEEECcCCc-ccccCC-C--CccccccChHHhcCCCCccCCC
Confidence            77 699999999854 54 445 2  2689999999999998665433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=7.8e-23  Score=199.46  Aligned_cols=209  Identities=22%  Similarity=0.251  Sum_probs=163.5

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCC-CcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVP-DEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS  157 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  157 (397)
                      ++.+..+|.. -.+++++|++++|.+..++ ..+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..++..
T Consensus        14 ~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           14 SRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             TSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred             CCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence            4456666664 3478999999999998864 344 899999999999998888877789999999999999999777664


Q ss_pred             -hcCcccCcEEEccCccCcCC--CccccCCCCCCEEEccCCC-CCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCC
Q 047708          158 -LSFLINLRTLSLHDCRRFGD--LPLIGELSLLEILDLSKSD-VSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRL  232 (397)
Q Consensus       158 -~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~-~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l  232 (397)
                       ++++++|++|++++|.+...  ++.++.+++|++|++++|. +..+| ..+..+++|++|++++|...+..|.. ++.+
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l  171 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI  171 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred             HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence             99999999999999998753  3478999999999999997 66776 57899999999999995544445554 8899


Q ss_pred             CCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC---Ccc-c-CCCccEEEEEecC
Q 047708          233 RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS---SDM-S-FQNLTSFSITIGD  301 (397)
Q Consensus       233 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~-~-~~~L~~L~l~~~~  301 (397)
                      ++|++|++..|.... +          ....+..+++|++|++++|....++   ..+ . +++|+.|++..+.
T Consensus       172 ~~L~~L~l~~n~~~~-~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          172 RDIHHLTLHLSESAF-L----------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             SEEEEEEEECSBSTT-H----------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             ccCceEecccCcccc-c----------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            999999999887653 1          1112346899999999999866542   222 2 5666776666553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=8.7e-23  Score=194.47  Aligned_cols=281  Identities=17%  Similarity=0.166  Sum_probs=200.4

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCC-CC-ChhhcCcccCcEEEccCcc
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF-SL-PSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~~~  173 (397)
                      +.++..++.++.+|.  -.++|++|++++|.+..+++..|.++++|++|++++|.+. .+ +..+.++++|++|++++|.
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            467777788888887  3478999999999988887777899999999999999884 44 5678999999999999999


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCc-cchh--hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccc
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSE-IPIS--FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQF  249 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  249 (397)
                      +....+ .++.+++|++|++++|.++. .|..  +..+++|++|++++|...+..|...++.+++|++|++++|.+.+..
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence            987755 89999999999999999984 4544  8999999999999955444446555889999999999999987754


Q ss_pred             cCCCccCc--------------cc---------cccccCCC---------------------------------------
Q 047708          250 EGEEDSSS--------------NA---------KFIELGSL---------------------------------------  267 (397)
Q Consensus       250 ~~~~~~~~--------------~~---------~~~~l~~l---------------------------------------  267 (397)
                      +.......              ..         ....+..+                                       
T Consensus       171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~  250 (455)
T 3v47_A          171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY  250 (455)
T ss_dssp             TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred             hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence            43211000              00         00001111                                       


Q ss_pred             ------------------------CCCCEEEEeccCCCC-CCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708          268 ------------------------SRLTSLHIHIPNGKI-MSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR  321 (397)
Q Consensus       268 ------------------------~~L~~L~l~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~  321 (397)
                                              ++|++|++++|.+.. .|..+. +++|+.|+++.|.......    ..+..     
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~-----  321 (455)
T 3v47_A          251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NAFWG-----  321 (455)
T ss_dssp             TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----TTTTT-----
T ss_pred             ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----hHhcC-----
Confidence                                    345555555555333 344456 7788888877665432211    12333     


Q ss_pred             cccccceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecC
Q 047708          322 CSRAMGLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNS  391 (397)
Q Consensus       322 ~~~L~~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~  391 (397)
                      +++|+.|++ ++.++.+ |..+..+ ++|++|+|+++ .++.++ .....++++|++|++++| .++.++..
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~  389 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFENL-DKLEVLDLSYN-HIRALG-DQSFLGLPNLKELALDTN-QLKSVPDG  389 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGTTC-TTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             cccCCEEECCCCccCCcChhHhcCc-ccCCEEECCCC-cccccC-hhhccccccccEEECCCC-ccccCCHh
Confidence            778888888 6667665 4455555 68999999874 555553 122357899999999887 56777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.6e-22  Score=179.02  Aligned_cols=211  Identities=24%  Similarity=0.296  Sum_probs=157.3

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCC-CCCC-C
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR-GFSL-P  155 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~  155 (397)
                      +..+..+|.. ..++++.|+++++.+..++.. + ++++|+.|++++|.+..+.+..|..+++|++|++++|. +..+ |
T Consensus        20 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           20 QQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             SSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             cCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence            3445555542 456788888888888876543 3 77888888888888777766667888888888888886 6655 6


Q ss_pred             hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                      ..+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|. .++.+++|++|++++ +.++.++...+..++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcc
Confidence            677788888888888888776655 67788888888888888887664 477888888888888 566677766577888


Q ss_pred             CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcc
Q 047708          234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~  303 (397)
                      +|++|++++|.+.+           ..+..+..+++|+.|++++|.+..++.. +. +++|+.|+++.|+..
T Consensus       178 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          178 SLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            88888888888765           2345677788888888888887776644 55 788888888877644

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=1.8e-22  Score=199.30  Aligned_cols=195  Identities=17%  Similarity=0.158  Sum_probs=157.1

Q ss_pred             CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708           95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~  173 (397)
                      -++++.++..++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus        13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence            4678888899999987654 8999999999999888887789999999999999999766 6678999999999999999


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeeccccccccc
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      +....| .++.+++|++|++++|.+..++ ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+.+.. 
T Consensus        92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~-  169 (606)
T 3vq2_A           92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT-  169 (606)
T ss_dssp             CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC-
T ss_pred             ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC-
Confidence            988866 8999999999999999999776 689999999999999954433 46766 999999999999999987632 


Q ss_pred             CCCccCccccccccCCCCC----CCEEEEeccCCCCCCCccc-CCCccEEEEEecCc
Q 047708          251 GEEDSSSNAKFIELGSLSR----LTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDL  302 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~  302 (397)
                                +..++.+++    +.+|++++|.+..++.... ..+|+.|+++.+..
T Consensus       170 ----------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~  216 (606)
T 3vq2_A          170 ----------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN  216 (606)
T ss_dssp             ----------TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred             ----------hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCcc
Confidence                      223333333    3367777777666655544 44677777666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=8.3e-23  Score=199.26  Aligned_cols=291  Identities=14%  Similarity=0.159  Sum_probs=209.2

Q ss_pred             CccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC--CChhhcCccc
Q 047708           88 SINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS--LPSSLSFLIN  163 (397)
Q Consensus        88 ~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~  163 (397)
                      ....++++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|+++++|++|++++|.+..  .|..++++++
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            34678999999999999998654 34 89999999999999999998888999999999999999964  4678999999


Q ss_pred             CcEEEccCccCcC-CCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708          164 LRTLSLHDCRRFG-DLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM  240 (397)
Q Consensus       164 L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  240 (397)
                      |++|++++|.... .++ .+..+++|++|++++|.++ ..|..++.+++|++|+++. +....+|...++.+++|++|++
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEE
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc-CcccccchhhHhhcccccEEEc
Confidence            9999999998444 343 7899999999999999998 5788999999999999998 5567778776678999999999


Q ss_pred             ecccccccc--cCCCcc--C------------c----ccc---------------------------------cccc---
Q 047708          241 SRSFHHWQF--EGEEDS--S------------S----NAK---------------------------------FIEL---  264 (397)
Q Consensus       241 ~~~~~~~~~--~~~~~~--~------------~----~~~---------------------------------~~~l---  264 (397)
                      ++|.+.+..  +.....  .            .    ..+                                 +..+   
T Consensus       204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L  283 (549)
T 2z81_A          204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV  283 (549)
T ss_dssp             ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred             cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence            999887631  000000  0            0    000                                 0000   


Q ss_pred             -----------------------CCCCCCCEEEEeccCCCCCCCcc-c-CCCccEEEEEecCcccchhhhHHHHhhhhcc
Q 047708          265 -----------------------GSLSRLTSLHIHIPNGKIMSSDM-S-FQNLTSFSITIGDLAAGFISAAIEVFSRKFK  319 (397)
Q Consensus       265 -----------------------~~l~~L~~L~l~~~~~~~~~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~  319 (397)
                                             ....+|++|++++|.+..+|..+ . +++|+.|+++.|......+. ....+.    
T Consensus       284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~----  358 (549)
T 2z81_A          284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK-NSACKG----  358 (549)
T ss_dssp             CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH-HHTCTT----
T ss_pred             ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc-chhhhh----
Confidence                                   11245677777777777777665 3 78888888887765432111 001122    


Q ss_pred             cccccccceec-ccccccchH---HHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeec
Q 047708          320 KRCSRAMGLSQ-DMRISGVHS---WIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLN  390 (397)
Q Consensus       320 ~~~~~L~~L~l-~~~~~~lp~---~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~  390 (397)
                       .+++|+.|++ ++.++.+|.   .+..+ ++|++|++++| .++.++..  .+.+++|++|++++|. ++.++.
T Consensus       359 -~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~lp~~--~~~~~~L~~L~Ls~N~-l~~l~~  427 (549)
T 2z81_A          359 -AWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRN-TFHPMPDS--CQWPEKMRFLNLSSTG-IRVVKT  427 (549)
T ss_dssp             -SSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTC-CCCCCCSC--CCCCTTCCEEECTTSC-CSCCCT
T ss_pred             -ccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCC-CCccCChh--hcccccccEEECCCCC-cccccc
Confidence             2677888888 677776653   23333 68888888874 56665532  2356777777777763 444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=4.6e-22  Score=177.43  Aligned_cols=262  Identities=18%  Similarity=0.188  Sum_probs=197.9

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc-
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR-  173 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~-  173 (397)
                      +.++..++.+..+|... .++|+.|++++|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|. 
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            67888888888887644 57999999999999888887789999999999999999666 7789999999999999997 


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG  251 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  251 (397)
                      +....+ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.++...++.+++|++|++++|.+.+    
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----  167 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISS----  167 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCE----
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccc----
Confidence            655544 889999999999999999966 56789999999999999 66777777768999999999999998875    


Q ss_pred             CCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccccee
Q 047708          252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLS  329 (397)
Q Consensus       252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~  329 (397)
                             .....+..+++|++|++++|.+..+ |..+. +++|+.|+++.|..... .+   ..+..     +++|+.|+
T Consensus       168 -------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~---~~~~~-----l~~L~~L~  231 (285)
T 1ozn_A          168 -------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PT---EALAP-----LRALQYLR  231 (285)
T ss_dssp             -------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CH---HHHTT-----CTTCCEEE
T ss_pred             -------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CH---HHccc-----CcccCEEe
Confidence                   2233578899999999999997665 66777 99999999998865432 11   23444     88899999


Q ss_pred             c-cccccc-ch-HHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708          330 Q-DMRISG-VH-SWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC  382 (397)
Q Consensus       330 l-~~~~~~-lp-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c  382 (397)
                      + ++.+.. .+ .|+.   ..++.+......---..|..+....+..++..++.+|
T Consensus       232 l~~N~~~c~~~~~~~~---~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          232 LNDNPWVCDCRARPLW---AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             CCSSCEECSGGGHHHH---HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             ccCCCccCCCCcHHHH---HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            9 555542 11 1222   2333333333111112232333334556666666666

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=191.37  Aligned_cols=227  Identities=22%  Similarity=0.259  Sum_probs=159.3

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-  156 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-  156 (397)
                      +..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..++. 
T Consensus        52 ~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  130 (440)
T 3zyj_A           52 RKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG  130 (440)
T ss_dssp             SCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred             CCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence            3445555543 34677888888888777543 23 77888888888888777776677888888888888888876655 


Q ss_pred             hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCC-CCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKS-DVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                      .+..+++|++|++++|.+...++ .+..+++|++|++++| .+..++. .+..+++|++|++++ +.++.+|.  +..++
T Consensus       131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~  207 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LTPLI  207 (440)
T ss_dssp             TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CTTCS
T ss_pred             HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cCCCc
Confidence            57778888888888887766655 6777888888888874 4555554 577788888888888 56667774  77788


Q ss_pred             CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhHH
Q 047708          234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAAI  311 (397)
Q Consensus       234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~~  311 (397)
                      +|++|++++|.+.+           .....+..+++|++|++++|.+..++. .+. +++|+.|+++.|....       
T Consensus       208 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------  269 (440)
T 3zyj_A          208 KLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-------  269 (440)
T ss_dssp             SCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-------
T ss_pred             ccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-------
Confidence            88888888887765           234567777888888888887655543 355 7888888887765431       


Q ss_pred             HHhhhhcccccccccceec
Q 047708          312 EVFSRKFKKRCSRAMGLSQ  330 (397)
Q Consensus       312 ~~l~~~~~~~~~~L~~L~l  330 (397)
                        ++...+..+++|+.|++
T Consensus       270 --~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          270 --LPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             --CCTTTTSSCTTCCEEEC
T ss_pred             --cChhHhccccCCCEEEc
Confidence              11122233677777777

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=1.5e-22  Score=192.47  Aligned_cols=227  Identities=22%  Similarity=0.245  Sum_probs=155.6

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-  156 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-  156 (397)
                      +..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..+|. 
T Consensus        63 ~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  141 (452)
T 3zyi_A           63 RRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG  141 (452)
T ss_dssp             SSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred             CCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence            3444444542 33577888888887777533 33 77888888888887777776667778888888888887766654 


Q ss_pred             hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCC-CCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKS-DVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                      .+..+++|++|++++|.+...++ .+..+++|++|++++| .+..++. .+..+++|++|++++ +.++.+|.  +..++
T Consensus       142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~  218 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPLV  218 (452)
T ss_dssp             TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTCT
T ss_pred             hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--ccccc
Confidence            36677888888888887766555 6777888888888774 5556654 567778888888887 55666664  67778


Q ss_pred             CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC-Cccc-CCCccEEEEEecCcccchhhhHH
Q 047708          234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMS-FQNLTSFSITIGDLAAGFISAAI  311 (397)
Q Consensus       234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~  311 (397)
                      +|++|++++|.+.+           ..+..+..+++|++|++++|.+..++ ..+. +++|+.|+++.|....       
T Consensus       219 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------  280 (452)
T 3zyi_A          219 GLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-------  280 (452)
T ss_dssp             TCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-------
T ss_pred             cccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-------
Confidence            88888888887765           23456777788888888888765553 3455 7888888887775431       


Q ss_pred             HHhhhhcccccccccceec
Q 047708          312 EVFSRKFKKRCSRAMGLSQ  330 (397)
Q Consensus       312 ~~l~~~~~~~~~~L~~L~l  330 (397)
                        ++...+..+++|+.|++
T Consensus       281 --~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          281 --LPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             --CCTTSSTTCTTCCEEEC
T ss_pred             --cChHHhccccCCCEEEc
Confidence              11222233667777777

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.5e-22  Score=193.56  Aligned_cols=147  Identities=21%  Similarity=0.210  Sum_probs=108.7

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS  156 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  156 (397)
                      .++.+..+|... .+++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..+|.
T Consensus         8 s~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~   86 (520)
T 2z7x_B            8 SKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC   86 (520)
T ss_dssp             TTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred             CCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence            344555555532 2788888888888887653 23 78888888888888777766667888888888888888877776


Q ss_pred             hhcCcccCcEEEccCccCcCC-C-ccccCCCCCCEEEccCCCCCccchhhhCCCCC--CeeecCCCCC--CCCCchhhhc
Q 047708          157 SLSFLINLRTLSLHDCRRFGD-L-PLIGELSLLEILDLSKSDVSEIPISFGRLSHL--RLLDLTDCDD--LELIPRGVLS  230 (397)
Q Consensus       157 ~~~~l~~L~~L~l~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~~~~  230 (397)
                      .  .+++|++|++++|.+... . ..++.+++|++|++++|.++.  ..+..+++|  ++|++++|..  ....|.. ++
T Consensus        87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~  161 (520)
T 2z7x_B           87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQ  161 (520)
T ss_dssp             C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TT
T ss_pred             c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-cc
Confidence            6  788888888888888663 3 478888888888888888775  356667777  8888888554  3444544 55


Q ss_pred             C
Q 047708          231 R  231 (397)
Q Consensus       231 ~  231 (397)
                      .
T Consensus       162 ~  162 (520)
T 2z7x_B          162 D  162 (520)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=2.6e-22  Score=184.70  Aligned_cols=260  Identities=20%  Similarity=0.209  Sum_probs=205.1

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS  156 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  156 (397)
                      .+..+..+|.. -.+++++|++++|.+..++. .+ ++++|+.|++++|.+..+++..|.++++|++|++++|.+..+|.
T Consensus        39 ~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  117 (353)
T 2z80_A           39 SSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS  117 (353)
T ss_dssp             CSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred             CCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence            34556666653 45689999999999999776 33 89999999999999888877778999999999999999988887


Q ss_pred             h-hcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCC-CCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcC
Q 047708          157 S-LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKS-DVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSR  231 (397)
Q Consensus       157 ~-~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~-~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~  231 (397)
                      . ++.+++|++|++++|.+...++  .+..+++|++|++++| .+..+ |..++.+++|++|++++| .++.+++..++.
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~  196 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKS  196 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTT
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhc
Confidence            6 8899999999999999977665  6889999999999999 57766 468899999999999994 455554444899


Q ss_pred             CCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc----cc-CCCccEEEEEecCcccch
Q 047708          232 LRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD----MS-FQNLTSFSITIGDLAAGF  306 (397)
Q Consensus       232 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~  306 (397)
                      +++|++|++++|.+.. +          ....+..+++|++|++++|.+..++..    .. ...++.+++..+......
T Consensus       197 l~~L~~L~l~~n~l~~-~----------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          197 IQNVSHLILHMKQHIL-L----------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CSEEEEEEEECSCSTT-H----------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cccCCeecCCCCcccc-c----------hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            9999999999998753 1          122344578999999999996665432    22 677889999877654332


Q ss_pred             hhhHHHHhhhhcccccccccceec-ccccccchHHH-HHHHhhccceecccCC
Q 047708          307 ISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWI-KNLLLRSEILALVDVN  357 (397)
Q Consensus       307 ~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~-~~~~~~L~~L~l~~c~  357 (397)
                      .......+..     +++|+.|++ ++.++.+|.++ ..+ ++|++|+|++++
T Consensus       266 l~~l~~~l~~-----l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L~~L~L~~N~  312 (353)
T 2z80_A          266 LFQVMKLLNQ-----ISGLLELEFSRNQLKSVPDGIFDRL-TSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHHHHT-----CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred             hhhhHHHHhc-----ccCCCEEECCCCCCCccCHHHHhcC-CCCCEEEeeCCC
Confidence            2212233444     889999999 88889999886 445 799999999865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.1e-22  Score=200.02  Aligned_cols=278  Identities=17%  Similarity=0.130  Sum_probs=213.7

Q ss_pred             ccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEE
Q 047708           91 KFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTL  167 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L  167 (397)
                      .+++++.+++.++.+..+|...  ++++|+.|++++|.+..+++..|..+++|++|++++|.+..+|. .++++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            5788999999999999988865  79999999999999888887778999999999999999976654 57899999999


Q ss_pred             EccCccCcCCCcc-ccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708          168 SLHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       168 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  245 (397)
                      ++++|.+...++. ++.+++|++|++++|.+..++ ..++.+++|++|++++ +.++.++   ++.+++|+.|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCcc
Confidence            9999999877774 699999999999999998665 4789999999999999 5666665   56789999999999987


Q ss_pred             cccccCC-------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708          246 HWQFEGE-------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK  317 (397)
Q Consensus       246 ~~~~~~~-------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~  317 (397)
                      .+.....       .......+...  ..++|+.|++++|.+... .++. +++|+.|+++.|.......    ..+.. 
T Consensus       205 ~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~-  276 (597)
T 3oja_B          205 STLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY----HPFVK-  276 (597)
T ss_dssp             SEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES----GGGTT-
T ss_pred             ccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCH----HHhcC-
Confidence            6521110       00001111111  135788888888887665 4566 8999999998876543211    23333 


Q ss_pred             cccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708          318 FKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL  389 (397)
Q Consensus       318 ~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~  389 (397)
                          +++|+.|++ ++.+..+|..+..+ ++|+.|+|++ +.+..++..+  +.+++|+.|++++|+ +..++
T Consensus       277 ----l~~L~~L~Ls~N~l~~l~~~~~~l-~~L~~L~Ls~-N~l~~i~~~~--~~l~~L~~L~L~~N~-l~~~~  340 (597)
T 3oja_B          277 ----MQRLERLYISNNRLVALNLYGQPI-PTLKVLDLSH-NHLLHVERNQ--PQFDRLENLYLDHNS-IVTLK  340 (597)
T ss_dssp             ----CSSCCEEECTTSCCCEEECSSSCC-TTCCEEECCS-SCCCCCGGGH--HHHTTCSEEECCSSC-CCCCC
T ss_pred             ----ccCCCEEECCCCCCCCCCcccccC-CCCcEEECCC-CCCCccCccc--ccCCCCCEEECCCCC-CCCcC
Confidence                788999999 77788787666555 6999999998 4566665433  478999999999875 44443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=7.4e-22  Score=201.69  Aligned_cols=291  Identities=19%  Similarity=0.206  Sum_probs=191.3

Q ss_pred             EecCCccCCCCCccccccCceEEccCCCcccC-CCcC-CCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCCCCCC
Q 047708           77 IKAGVELKDWPSINKFEDLTGISLMFNDIHEV-PDEL-ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFS  153 (397)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~  153 (397)
                      ...+..+..+|.  ..+++++|++++|.++.+ +..+ ++++|+.|++++|. ...+++..|.++++|++|++++|.+..
T Consensus        10 dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           10 FYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             EESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             EccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            344566777777  568899999999999885 4444 89999999999996 677766678999999999999999965


Q ss_pred             C-ChhhcCcccCcEEEccCccCcCCCc---cccCCCCCCEEEccCCCCCcc--chhhhCCCCCCeeecCCCCCCCCCchh
Q 047708          154 L-PSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSEI--PISFGRLSHLRLLDLTDCDDLELIPRG  227 (397)
Q Consensus       154 l-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~  227 (397)
                      + |..++++++|++|++++|.+....+   .++.+++|++|++++|.++.+  +..++++++|++|++++|......+..
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence            5 7889999999999999999876443   389999999999999988855  357899999999999985433333332


Q ss_pred             hhcCC--CCCCEEEeecccccccccC------------------------------CCccC-------------------
Q 047708          228 VLSRL--RKLEELYMSRSFHHWQFEG------------------------------EEDSS-------------------  256 (397)
Q Consensus       228 ~~~~l--~~L~~L~l~~~~~~~~~~~------------------------------~~~~~-------------------  256 (397)
                       ++.+  ++|+.|+++.|.+.+..+.                              .....                   
T Consensus       168 -l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~  246 (844)
T 3j0a_A          168 -LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG  246 (844)
T ss_dssp             -GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred             -cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence             4443  4555555555444432221                              10000                   


Q ss_pred             ------ccccccccCC--CCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708          257 ------SNAKFIELGS--LSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM  326 (397)
Q Consensus       257 ------~~~~~~~l~~--l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~  326 (397)
                            .......+..  .++|+.|++++|.+..+ +..+. +++|+.|+++.|...... +   ..+.     .+++|+
T Consensus       247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~---~~~~-----~l~~L~  317 (844)
T 3j0a_A          247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-D---EAFY-----GLDNLQ  317 (844)
T ss_dssp             SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-T---TTTT-----TCSSCC
T ss_pred             ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-h---HHhc-----CCCCCC
Confidence                  0000001111  25677777777775444 33455 777888888776543211 1   1222     366777


Q ss_pred             ceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708          327 GLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC  382 (397)
Q Consensus       327 ~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c  382 (397)
                      .|++ ++.++.+ |..+..+ ++|++|+++++ .+..++.. ...++++|+.|++++|
T Consensus       318 ~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          318 VLNLSYNLLGELYSSNFYGL-PKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             EEEEESCCCSCCCSCSCSSC-TTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred             EEECCCCCCCccCHHHhcCC-CCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence            7777 5555544 4444444 47777777763 45544311 2345667777777665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=7.5e-22  Score=197.42  Aligned_cols=167  Identities=20%  Similarity=0.190  Sum_probs=112.7

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-  156 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-  156 (397)
                      +..+..+|.. -.+++++|++++|.+..++.. + ++++|++|++++|.+..+++..|.++++|++|++++|.+..+|. 
T Consensus        13 ~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~   91 (680)
T 1ziw_A           13 HLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK   91 (680)
T ss_dssp             SSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence            3444555543 236777788887777776553 2 67777888887777666666667777778888887777766665 


Q ss_pred             hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhc--CC
Q 047708          157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLS--RL  232 (397)
Q Consensus       157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~--~l  232 (397)
                      .++++++|++|++++|.+...++ .++.+++|++|++++|.++.. |..++++++|++|++++ +.++.++...++  .+
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~  170 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFAN  170 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTT
T ss_pred             hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhcccc
Confidence            47777777888877777766654 677777777777777777643 45567777777777777 344444443333  44


Q ss_pred             CCCCEEEeeccccccc
Q 047708          233 RKLEELYMSRSFHHWQ  248 (397)
Q Consensus       233 ~~L~~L~l~~~~~~~~  248 (397)
                      ++|++|++++|.+.+.
T Consensus       171 ~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEF  186 (680)
T ss_dssp             CEESEEECTTCCCCCB
T ss_pred             ccccEEECCCCccccc
Confidence            6777777777766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=1.2e-21  Score=191.55  Aligned_cols=139  Identities=22%  Similarity=0.159  Sum_probs=111.8

Q ss_pred             EecCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708           77 IKAGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL  154 (397)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  154 (397)
                      ...+..+..+|.. -.+++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..+
T Consensus        37 ~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  115 (562)
T 3a79_B           37 DYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI  115 (562)
T ss_dssp             ECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             EcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc
Confidence            3445566666654 34789999999999998764 33 889999999999998888777789999999999999999888


Q ss_pred             ChhhcCcccCcEEEccCccCcCCC--ccccCCCCCCEEEccCCCCCccchhhhCCCCC--CeeecCCCCC
Q 047708          155 PSSLSFLINLRTLSLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIPISFGRLSHL--RLLDLTDCDD  220 (397)
Q Consensus       155 ~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L--~~L~l~~~~~  220 (397)
                      |..  .+++|++|++++|.+...+  ..++.+++|++|++++|.++..  .+..+++|  ++|++++|..
T Consensus       116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred             Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence            876  8999999999999987643  3889999999999999988752  45555666  9999988544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=8.3e-22  Score=197.13  Aligned_cols=287  Identities=21%  Similarity=0.223  Sum_probs=207.6

Q ss_pred             CCccCCCCC--ccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC
Q 047708           80 GVELKDWPS--INKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP  155 (397)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  155 (397)
                      ++.+...+.  ...+++|++|++++|.+..++.. + ++++|++|++++|.+..++...|.++++|++|++++|.+..++
T Consensus        34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence            444444443  46789999999999999986443 4 8999999999999999999877899999999999999997775


Q ss_pred             -hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hh--hCCCCCCeeecCCCCCCCCCchhhhc
Q 047708          156 -SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SF--GRLSHLRLLDLTDCDDLELIPRGVLS  230 (397)
Q Consensus       156 -~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i--~~l~~L~~L~l~~~~~~~~~~~~~~~  230 (397)
                       ..++++++|++|++++|.+...++ .++.+++|++|++++|.++.++. .+  ..+++|++|++++| .++.+++..++
T Consensus       114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~  192 (680)
T 1ziw_A          114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFH  192 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGG
T ss_pred             hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhh
Confidence             579999999999999999877766 78899999999999999987764 33  35689999999994 55666555466


Q ss_pred             CCCCC---------------------------CEEEeecccccccccCCCccCccccccccCCCC--CCCEEEEeccCCC
Q 047708          231 RLRKL---------------------------EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLS--RLTSLHIHIPNGK  281 (397)
Q Consensus       231 ~l~~L---------------------------~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~  281 (397)
                      .+++|                           +.|++++|.+.+           ..+..+..++  +|++|++++|.+.
T Consensus       193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-----------TSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-----------ECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-----------cChhHhhccCcCCCCEEECCCCCcC
Confidence            66554                           455555554443           2234455554  4999999999866


Q ss_pred             CCC-Cccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecc-cccc------cchH----HHHHHHhhc
Q 047708          282 IMS-SDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQD-MRIS------GVHS----WIKNLLLRS  348 (397)
Q Consensus       282 ~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~-~~~~------~lp~----~~~~~~~~L  348 (397)
                      .++ ..+. +++|+.|+++.|...... +   ..+..     +++|+.|++. +...      .+|.    .+..+ ++|
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~-~---~~~~~-----l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L  331 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLF-S---HSLHG-----LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCL  331 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEEC-T---TTTTT-----CTTCCEEECTTCBCCC------CCEECTTTTTTC-TTC
T ss_pred             ccCcccccCcccccEeeCCCCccCccC-h---hhhcC-----CCCccEEeccchhhhcccccccccccChhhcccC-CCC
Confidence            554 4567 899999999877644221 1   13333     7888888883 2211      2332    33334 689


Q ss_pred             cceecccCCChhhhhhccccCCCCCccEEEEeccC-CceEeec
Q 047708          349 EILALVDVNDLENIVSDLANDGFNELMFLGIFGCN-EMKCLLN  390 (397)
Q Consensus       349 ~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~-~L~~i~~  390 (397)
                      ++|+++++ .+..++ .....++++|++|++++|. .+..++.
T Consensus       332 ~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~  372 (680)
T 1ziw_A          332 EHLNMEDN-DIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTN  372 (680)
T ss_dssp             CEEECCSC-CBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred             CEEECCCC-ccCCCC-hhHhccccCCcEEECCCCchhhhhcch
Confidence            99999874 455543 2224588999999999885 3444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=2e-22  Score=181.67  Aligned_cols=235  Identities=20%  Similarity=0.169  Sum_probs=183.9

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCccc---ChhhhcCCCcccEEEcCCCCCCC
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVI---PDRFFQGMKDLKVLDMGGIRGFS  153 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~  153 (397)
                      .+..+..+|.. ..+++++|+++++.+..++...  ++++|+.|++++|.+..+   +.. +..+++|++|++++|.+..
T Consensus        15 ~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~   92 (306)
T 2z66_A           15 NSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT   92 (306)
T ss_dssp             CSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEE
T ss_pred             CCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcccc
Confidence            34455555653 4578999999999999988753  899999999999986654   344 5679999999999999988


Q ss_pred             CChhhcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCC-CCchhhh
Q 047708          154 LPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLE-LIPRGVL  229 (397)
Q Consensus       154 l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~  229 (397)
                      +|..+..+++|++|++++|.+...++  .+..+++|++|++++|.+. ..|..+..+++|++|++++|...+ .+|.. +
T Consensus        93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~  171 (306)
T 2z66_A           93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-F  171 (306)
T ss_dssp             EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-C
T ss_pred             ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-H
Confidence            88889999999999999999877664  7889999999999999888 455678899999999999954333 24544 8


Q ss_pred             cCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchh
Q 047708          230 SRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFI  307 (397)
Q Consensus       230 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~  307 (397)
                      +.+++|++|++++|.+.+           ..+..+..+++|++|++++|.+..++. .+. +++|+.|+++.|.......
T Consensus       172 ~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             TTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             hhCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            899999999999998876           234677889999999999999877765 456 8999999999887543221


Q ss_pred             hhHHHHhhhhcccccccccceec-ccccc
Q 047708          308 SAAIEVFSRKFKKRCSRAMGLSQ-DMRIS  335 (397)
Q Consensus       308 ~~~~~~l~~~~~~~~~~L~~L~l-~~~~~  335 (397)
                      .    .+..    -+++|+.|++ ++.+.
T Consensus       241 ~----~~~~----~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          241 Q----ELQH----FPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             S----SCCC----CCTTCCEEECTTCCEE
T ss_pred             H----HHHh----hhccCCEEEccCCCee
Confidence            1    2222    1248899999 55554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=6.8e-21  Score=169.99  Aligned_cols=201  Identities=20%  Similarity=0.171  Sum_probs=176.7

Q ss_pred             ccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708           89 INKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS  168 (397)
Q Consensus        89 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  168 (397)
                      ...+++++.+++.++.++.+|..+. +.++.|++++|.+..++...|..+++|++|++++|.+..++.. +.+++|++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            3467889999999999999887663 7899999999998888877789999999999999999877664 7899999999


Q ss_pred             ccCccCcCCCccccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      +++|.+...+..+..+++|++|++++|.++.+| ..+..+++|++|++++ +.++.+|.+.+..+++|+.|++++|.+..
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc
Confidence            999999877668899999999999999999887 5789999999999999 67788888878999999999999999875


Q ss_pred             cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708          248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  303 (397)
                                 .....+..+++|+.|++++|.+..+|..+. .++|+.+.++.|+..
T Consensus       163 -----------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 -----------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             -----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -----------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence                       123446789999999999999999999888 889999999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=4.4e-21  Score=172.91  Aligned_cols=241  Identities=17%  Similarity=0.123  Sum_probs=170.4

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC---ChhhcCcccCcEEEccCc
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL---PSSLSFLINLRTLSLHDC  172 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~  172 (397)
                      +.++..++.++.+|... .++|+.|++++|.+..++..+|.++++|++|++++|.+..+   +..+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            45677777777777644 36788888888888788877778888888888888887544   566777888888888888


Q ss_pred             cCcCCCccccCCCCCCEEEccCCCCCccch--hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          173 RRFGDLPLIGELSLLEILDLSKSDVSEIPI--SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      .+...++.+..+++|++|++++|.++.++.  .+..+++|++|++++| .+...+...++.+++|++|++++|.+.+.  
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--  165 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN--  165 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred             ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccc--
Confidence            876655577888888888888888776653  6778888888888884 44444444477888888888888877641  


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccce
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGL  328 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L  328 (397)
                              ..+..+..+++|++|++++|.+..+ |..+. +++|+.|+++.|.......    ..+.     .+++|+.|
T Consensus       166 --------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-----~l~~L~~L  228 (306)
T 2z66_A          166 --------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----FPYK-----CLNSLQVL  228 (306)
T ss_dssp             --------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS----GGGT-----TCTTCCEE
T ss_pred             --------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh----hhcc-----CcccCCEe
Confidence                    1345677788888888888886665 45566 8888888888776432211    1222     36778888


Q ss_pred             ec-cccccc-chHHHHHHHhhccceecccCC
Q 047708          329 SQ-DMRISG-VHSWIKNLLLRSEILALVDVN  357 (397)
Q Consensus       329 ~l-~~~~~~-lp~~~~~~~~~L~~L~l~~c~  357 (397)
                      ++ ++.+.. .|..+..++++|++|+|++++
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            88 555543 333444432478888888743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=5.5e-20  Score=179.89  Aligned_cols=249  Identities=18%  Similarity=0.091  Sum_probs=193.4

Q ss_pred             ecCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708           78 KAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS  157 (397)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  157 (397)
                      ..++.+..+|... .++++.|++++|.++.+|.  .+++|+.|++++|.+..+|.    .+++|++|++++|.+..+|. 
T Consensus        47 ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~-  118 (622)
T 3g06_A           47 VGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA-  118 (622)
T ss_dssp             CCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC-
T ss_pred             ecCCCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC-
Confidence            3455566666542 3789999999999998887  67899999999999888875    78999999999999988877 


Q ss_pred             hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCE
Q 047708          158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEE  237 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  237 (397)
                        .+.+|++|++++|.+...+..   +++|++|++++|.++.+|.   .+.+|+.|++++ +.++.+|    ..+++|+.
T Consensus       119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~  185 (622)
T 3g06_A          119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQE  185 (622)
T ss_dssp             --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCE
T ss_pred             --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcE
Confidence              678899999999988765543   4889999999999998875   346889999998 6677777    35788999


Q ss_pred             EEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708          238 LYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRK  317 (397)
Q Consensus       238 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~  317 (397)
                      |++++|.+.+ +           +.   .+++|+.|++++|.+..+|..  +++|+.|+++.|....         ++  
T Consensus       186 L~Ls~N~l~~-l-----------~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~---------lp--  237 (622)
T 3g06_A          186 LSVSDNQLAS-L-----------PT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS---------LP--  237 (622)
T ss_dssp             EECCSSCCSC-C-----------CC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC---------CC--
T ss_pred             EECCCCCCCC-C-----------CC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCc---------CC--
Confidence            9999998864 1           11   247888999999888777743  5788999888775432         11  


Q ss_pred             cccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708          318 FKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE  384 (397)
Q Consensus       318 ~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~  384 (397)
                        ..+++|+.|++ ++.++.+|.    .+++|+.|+|++ +.++.++..  ...+++|+.|++++|+-
T Consensus       238 --~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~-N~L~~lp~~--l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          238 --VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYR-NQLTRLPES--LIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS-SCCCSCCGG--GGGSCTTCEEECCSCCC
T ss_pred             --CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCC-CCCCcCCHH--HhhccccCEEEecCCCC
Confidence              23678888988 777888886    236899999987 467777643  34789999999998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.1e-20  Score=179.15  Aligned_cols=240  Identities=20%  Similarity=0.239  Sum_probs=179.1

Q ss_pred             CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCcc
Q 047708           95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~  173 (397)
                      .+.++..+..++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|.
T Consensus        45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            4567777777777776553 67888888888877777767788888888888888886654 567788888888888888


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG  251 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  251 (397)
                      +...++ .+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+..    
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----  199 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE----  199 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS----
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc----
Confidence            876666 68888888888888888887664 677888888888888888888887768888888888888887763    


Q ss_pred             CCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccccee
Q 047708          252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLS  329 (397)
Q Consensus       252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~  329 (397)
                               +..+..+++|++|++++|.+..+ |..+. +++|+.|+++.|.....         ....+..+++|+.|+
T Consensus       200 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          200 ---------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI---------ERNAFDNLQSLVEIN  261 (440)
T ss_dssp             ---------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CTTSSTTCTTCCEEE
T ss_pred             ---------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE---------ChhhhcCCCCCCEEE
Confidence                     23567788888888888886665 44566 88888888887664321         112223377888888


Q ss_pred             c-ccccccchHHHHHHHhhccceecccCC
Q 047708          330 Q-DMRISGVHSWIKNLLLRSEILALVDVN  357 (397)
Q Consensus       330 l-~~~~~~lp~~~~~~~~~L~~L~l~~c~  357 (397)
                      + ++.++.+|.......++|+.|+|++++
T Consensus       262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          262 LAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            8 777777775443323688888888644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2e-20  Score=168.54  Aligned_cols=194  Identities=18%  Similarity=0.241  Sum_probs=169.9

Q ss_pred             CccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEE
Q 047708           88 SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTL  167 (397)
Q Consensus        88 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  167 (397)
                      ....+++++.|++.++.+..++....+++|+.|++++|.+..++.  +..+++|++|++++|.+..++ .+..+++|++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence            344688999999999999998866689999999999999888887  799999999999999998776 58999999999


Q ss_pred             EccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          168 SLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       168 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      ++++|.+... +.+..+++|++|++++|.++.++. +..+++|++|++++ +.++.++.  ++.+++|++|++++|.+.+
T Consensus       113 ~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          113 DLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             ECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            9999998654 458999999999999999998876 88999999999999 56777776  8899999999999999875


Q ss_pred             cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708          248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  303 (397)
                                   ...+..+++|++|++++|.+..++. +. +++|+.|+++.|...
T Consensus       188 -------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          188 -------------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -------------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             -------------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence                         2237789999999999999888874 56 999999999988754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.4e-20  Score=178.99  Aligned_cols=240  Identities=21%  Similarity=0.192  Sum_probs=178.4

Q ss_pred             CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708           95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~  173 (397)
                      .+.++..+..++.+|..+ .+.++.|++++|.+..++...|.++++|++|++++|.+..+ +..+.++++|++|++++|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            456777777777777644 36788888888887777766678888888888888888655 4577888888888888888


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG  251 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  251 (397)
                      +...++ .+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+.+    
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----  210 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----  210 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----
Confidence            876666 57788888888888888887765 677888888888888888888887768888888888888888764    


Q ss_pred             CCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccccee
Q 047708          252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLS  329 (397)
Q Consensus       252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~  329 (397)
                               ...+..+++|++|++++|.+..+ |..+. +++|+.|+++.|.......    ..+.     .+++|+.|+
T Consensus       211 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~-----~l~~L~~L~  272 (452)
T 3zyi_A          211 ---------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER----NAFD-----GLASLVELN  272 (452)
T ss_dssp             ---------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT----TTTT-----TCTTCCEEE
T ss_pred             ---------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH----HHhc-----CCCCCCEEE
Confidence                     23567788888888888886665 44566 8888888888766432211    1232     377888888


Q ss_pred             c-ccccccchHHHHHHHhhccceecccCC
Q 047708          330 Q-DMRISGVHSWIKNLLLRSEILALVDVN  357 (397)
Q Consensus       330 l-~~~~~~lp~~~~~~~~~L~~L~l~~c~  357 (397)
                      + ++.++.+|.......++|+.|+|++++
T Consensus       273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          273 LAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCCcCCccChHHhccccCCCEEEccCCC
Confidence            8 777777775543333688888888744

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=1.3e-20  Score=186.79  Aligned_cols=139  Identities=24%  Similarity=0.281  Sum_probs=113.3

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS  156 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  156 (397)
                      .+..+..+|.. --+.+++|++++|.++.+++. + ++++|++|++++|.+..+++..|.++++|++|+|++|.+..+|.
T Consensus        39 ~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           39 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             TTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            34455566643 124789999999999987653 3 88999999999999888888888999999999999999877765


Q ss_pred             -hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCC
Q 047708          157 -SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDC  218 (397)
Q Consensus       157 -~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~  218 (397)
                       .+.++++|++|++++|.+...++ .++.+++|++|++++|.++  .+|..++.+++|++|++++|
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence             57889999999999998877766 6889999999999999887  45778888999999988874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=5.9e-21  Score=195.03  Aligned_cols=273  Identities=17%  Similarity=0.147  Sum_probs=188.3

Q ss_pred             CccccccCceEEccCCCcc-cC-CCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC-CChh--hcCc
Q 047708           88 SINKFEDLTGISLMFNDIH-EV-PDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS-LPSS--LSFL  161 (397)
Q Consensus        88 ~~~~~~~l~~l~l~~~~~~-~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~--~~~l  161 (397)
                      ....+++|+.|++++|... .+ +..+ ++++|++|++++|.+..+++..|.++++|++|++++|.+.. +|..  ++++
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            3467889999999998544 45 4444 88999999999999887766678999999999999998854 4554  8889


Q ss_pred             ccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCCc-cchhhhCC--CCCCeeecCCCCCCCCCchhhhcCC----
Q 047708          162 INLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSE-IPISFGRL--SHLRLLDLTDCDDLELIPRGVLSRL----  232 (397)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~-lp~~i~~l--~~L~~L~l~~~~~~~~~~~~~~~~l----  232 (397)
                      ++|++|++++|.+....+  .++++++|++|++++|.++. .|..+..+  ++|+.|+++.|......|.. ++.+    
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~  201 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPF  201 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCcc
Confidence            999999999998876643  68899999999999988763 34455444  44555554443322222221 2222    


Q ss_pred             ----------------------------------------------------------------CCCCEEEeeccccccc
Q 047708          233 ----------------------------------------------------------------RKLEELYMSRSFHHWQ  248 (397)
Q Consensus       233 ----------------------------------------------------------------~~L~~L~l~~~~~~~~  248 (397)
                                                                                      ++|++|++++|.+.+ 
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-  280 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-  280 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-
Confidence                                                                            345555555554443 


Q ss_pred             ccCCCccCccccccccCCCCCCCEEEEeccCCCCCC-Cccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708          249 FEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM  326 (397)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~  326 (397)
                                .....+..+++|+.|++++|.+..++ ..+. +++|+.|+++.|..... .+   ..+     ..+++|+
T Consensus       281 ----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~---~~~-----~~l~~L~  341 (844)
T 3j0a_A          281 ----------LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YS---SNF-----YGLPKVA  341 (844)
T ss_dssp             ----------ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CS---CSC-----SSCTTCC
T ss_pred             ----------cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CH---HHh-----cCCCCCC
Confidence                      23456778899999999999966654 4566 89999999998864321 11   122     3378899


Q ss_pred             ceec-ccccccchHH-HHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeec
Q 047708          327 GLSQ-DMRISGVHSW-IKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLN  390 (397)
Q Consensus       327 ~L~l-~~~~~~lp~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~  390 (397)
                      .|++ ++.++.++.. +..+ ++|++|++++ +.++.++      .+++|+.|.+.+|. +..+|.
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~-N~l~~i~------~~~~L~~L~l~~N~-l~~l~~  398 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFL-EKLQTLDLRD-NALTTIH------FIPSIPDIFLSGNK-LVTLPK  398 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSC-CCCCEEEEET-CCSCCCS------SCCSCSEEEEESCC-CCCCCC
T ss_pred             EEECCCCCCCccChhhhcCC-CCCCEEECCC-CCCCccc------CCCCcchhccCCCC-cccccc
Confidence            9999 6677766643 3334 6899999987 4455443      47888888888773 455543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=2.4e-23  Score=188.60  Aligned_cols=239  Identities=15%  Similarity=0.136  Sum_probs=188.8

Q ss_pred             ccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708           91 KFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS  168 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  168 (397)
                      .+++++.|++++|.+..++. .+ .+++|+.|++++|.+...++  +..+++|++|++++|.+..++    ..++|++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence            45689999999999988764 33 88999999999999776665  789999999999999886554    348999999


Q ss_pred             ccCccCcCCCccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhh-cCCCCCCEEEeeccccc
Q 047708          169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVL-SRLRKLEELYMSRSFHH  246 (397)
Q Consensus       169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~  246 (397)
                      +++|.+...++.  .+++|++|++++|.++.++. .++.+++|++|++++ +.++.++...+ +.+++|++|++++|.+.
T Consensus       106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            999988665543  47889999999999997754 788899999999999 55565544334 57899999999999987


Q ss_pred             ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccc
Q 047708          247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRA  325 (397)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L  325 (397)
                      +             ......+++|++|++++|.+..+|..+. +++|+.|+++.|.... . +   ..+.     .+++|
T Consensus       183 ~-------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l-~---~~~~-----~l~~L  239 (317)
T 3o53_A          183 D-------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I-E---KALR-----FSQNL  239 (317)
T ss_dssp             E-------------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E-C---TTCC-----CCTTC
T ss_pred             c-------------cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-h-h---hHhh-----cCCCC
Confidence            5             1334458999999999999888888887 9999999999886542 1 1   1233     37889


Q ss_pred             cceec-ccccc--cchHHHHHHHhhccceecccCCChhhh
Q 047708          326 MGLSQ-DMRIS--GVHSWIKNLLLRSEILALVDVNDLENI  362 (397)
Q Consensus       326 ~~L~l-~~~~~--~lp~~~~~~~~~L~~L~l~~c~~l~~l  362 (397)
                      +.|++ ++.+.  .+|.++..+ ++|+.|++.++..++..
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTC-HHHHHHHHHHHHHHHSS
T ss_pred             CEEEccCCCccCcCHHHHHhcc-ccceEEECCCchhccCC
Confidence            99999 66665  677787777 58999999877766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=184.96  Aligned_cols=193  Identities=20%  Similarity=0.174  Sum_probs=152.5

Q ss_pred             CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708           95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~  173 (397)
                      .+.++..+.++..+|... .+.++.|++++|.+..++...|.++++|++|++++|.+..+ +..++++++|++|++++|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CcEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            355677777788888754 36799999999998888877789999999999999999766 4578999999999999999


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeeccccccccc
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      +...++ .++.+++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+.+.  
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~--  164 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI--  164 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE--
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee--
Confidence            887775 89999999999999999998875 68999999999999954333 36766 89999999999999988762  


Q ss_pred             CCCccCccccccccCCCCCC----CEEEEeccCCCCCCCcc-cCCCccEEEEEec
Q 047708          251 GEEDSSSNAKFIELGSLSRL----TSLHIHIPNGKIMSSDM-SFQNLTSFSITIG  300 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~  300 (397)
                               ....++.+++|    ++|++++|....++... ...+|+.|++..+
T Consensus       165 ---------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          165 ---------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             ---------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             ---------cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence                     23445555555    67777777755544332 2335666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=3.3e-22  Score=181.13  Aligned_cols=214  Identities=17%  Similarity=0.135  Sum_probs=111.5

Q ss_pred             CCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEcc
Q 047708          114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLS  193 (397)
Q Consensus       114 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  193 (397)
                      +++|+.|++++|.+..+++..|..+++|++|++++|.+...+. +..+++|++|++++|.+...+    ..++|++|+++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~  107 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA  107 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence            4456666666666555555455666666666666665543333 555666666666665543222    23556666666


Q ss_pred             CCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccccc-CCCCCCCE
Q 047708          194 KSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL-GSLSRLTS  272 (397)
Q Consensus       194 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~  272 (397)
                      +|.++.++..  .+++|++|++++ +.++.++...++.+++|++|++++|.+.+.           .+..+ ..+++|++
T Consensus       108 ~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~~l~~L~~  173 (317)
T 3o53_A          108 NNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV-----------NFAELAASSDTLEH  173 (317)
T ss_dssp             SSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEE-----------EGGGGGGGTTTCCE
T ss_pred             CCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcc-----------cHHHHhhccCcCCE
Confidence            6665544432  245566666665 344444443355556666666666655441           12222 24556666


Q ss_pred             EEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccce
Q 047708          273 LHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEIL  351 (397)
Q Consensus       273 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L  351 (397)
                      |++++|.+..++....+++|+.|+++.|..... .+    .+..     +++|+.|++ ++.++.+|..+..+ ++|+.|
T Consensus       174 L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-~~----~~~~-----l~~L~~L~L~~N~l~~l~~~~~~l-~~L~~L  242 (317)
T 3o53_A          174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GP----EFQS-----AAGVTWISLRNNKLVLIEKALRFS-QNLEHF  242 (317)
T ss_dssp             EECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CG----GGGG-----GTTCSEEECTTSCCCEECTTCCCC-TTCCEE
T ss_pred             EECCCCcCcccccccccccCCEEECCCCcCCcc-hh----hhcc-----cCcccEEECcCCcccchhhHhhcC-CCCCEE
Confidence            666666655554333355666666665543211 11    1222     555666666 55555555544443 456666


Q ss_pred             ecccCC
Q 047708          352 ALVDVN  357 (397)
Q Consensus       352 ~l~~c~  357 (397)
                      ++++++
T Consensus       243 ~l~~N~  248 (317)
T 3o53_A          243 DLRGNG  248 (317)
T ss_dssp             ECTTCC
T ss_pred             EccCCC
Confidence            666533

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.7e-20  Score=162.46  Aligned_cols=197  Identities=21%  Similarity=0.328  Sum_probs=168.2

Q ss_pred             cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCc
Q 047708           94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDC  172 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~  172 (397)
                      +.+.++++++.++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            46789999999998887553 6899999999998888887789999999999999999888765 478999999999999


Q ss_pred             cCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          173 RRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       173 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      .+...++ .+..+++|++|++++|.++.+|. .+..+++|++|++++ +.++.+|...++.+++|++|++++|.+..   
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---  171 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKR---  171 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcE---
Confidence            9877776 67899999999999999997764 578999999999999 67778887778899999999999998875   


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcc
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~  303 (397)
                              .....+..+++|++|++++|.+..++.. +. +++|+.|+++.|+..
T Consensus       172 --------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          172 --------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             --------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             --------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence                    2234577889999999999998888775 55 899999999887743

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=2.4e-21  Score=171.49  Aligned_cols=153  Identities=25%  Similarity=0.375  Sum_probs=69.0

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSL  169 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l  169 (397)
                      .+++++.|++.++.+..++....+++|+.|++++|.+..++  .+..+++|++|++++|.+..++. .++.+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            44455555555555544444334455555555555444332  13444555555555554433332 2344444555555


Q ss_pred             cCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          170 HDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++|.+...++ .++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.++...++.+++|++|++++|.+.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            5444443333 234444444444444444443322 34444444444444 2333333333344444444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=6.9e-20  Score=162.52  Aligned_cols=209  Identities=21%  Similarity=0.228  Sum_probs=164.9

Q ss_pred             CccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hh
Q 047708           81 VELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SS  157 (397)
Q Consensus        81 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~  157 (397)
                      ..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..++ ..
T Consensus        17 ~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           17 LNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             SCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            334444542 23579999999999988665 33 8899999999999988888777889999999999999986654 57


Q ss_pred             hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCc--cchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCC
Q 047708          158 LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSE--IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRK  234 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  234 (397)
                      +.++++|++|++++|.+....+ .++.+++|++|++++|.++.  +|..+..+++|++|++++ +.++.++...+..+++
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHT
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhh
Confidence            8889999999999998877766 78899999999999998885  688999999999999999 5666666544666666


Q ss_pred             CC----EEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcc
Q 047708          235 LE----ELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       235 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~  303 (397)
                      |+    .|++++|.+.+            +........+|++|++++|.+..+|.. +. +++|+.|+++.|+..
T Consensus       175 L~~l~l~L~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNF------------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CTTCCEEEECCSSCCCE------------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ccccceeeecCCCcccc------------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            65    88999988875            222333345899999999998888776 45 899999999877654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=1.5e-19  Score=171.45  Aligned_cols=246  Identities=17%  Similarity=0.132  Sum_probs=132.9

Q ss_pred             ccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCc
Q 047708           93 EDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDC  172 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  172 (397)
                      ++++.|++++|.+..++...  ++|++|++++|.+..+|.  ++++++|++|++++|.+..+|..+   .+|++|++++|
T Consensus       111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n  183 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred             CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence            34444444444444333211  456666666666555552  466666666666666665555432   35666666666


Q ss_pred             cCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC
Q 047708          173 RRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE  252 (397)
Q Consensus       173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  252 (397)
                      .+.. +|.++.+++|++|++++|.++.+|...   .+|++|++++| .++.+|.  ++.+++|++|++++|.+.+ +|  
T Consensus       184 ~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~-l~--  253 (454)
T 1jl5_A          184 QLEE-LPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT-LP--  253 (454)
T ss_dssp             CCSS-CCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-CC--
T ss_pred             cCCc-CccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc-cc--
Confidence            5544 335666666666666666666555432   36666666663 4446663  6677777777777776654 11  


Q ss_pred             CccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccc-hhhhH----------HHHhhhhcccc
Q 047708          253 EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAG-FISAA----------IEVFSRKFKKR  321 (397)
Q Consensus       253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~----------~~~l~~~~~~~  321 (397)
                               .   .+++|++|++++|.+..+|..  +++|+.|+++.|....- ..+..          +..++.    .
T Consensus       254 ---------~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~----~  315 (454)
T 1jl5_A          254 ---------D---LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD----L  315 (454)
T ss_dssp             ---------S---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC----C
T ss_pred             ---------c---cccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC----C
Confidence                     1   124555555555554444432  24455555544432210 00000          000111    1


Q ss_pred             cccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          322 CSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       322 ~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      +.+|+.|++ ++.+..+|..+    ++|++|++++| .++.++.     .+++|++|++++|+
T Consensus       316 ~~~L~~L~Ls~N~l~~lp~~~----~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          316 PPSLEELNVSNNKLIELPALP----PRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCC----TTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred             cCcCCEEECCCCccccccccC----CcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence            246777777 66666666542    57888888774 5665552     46788888888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=1.3e-19  Score=177.22  Aligned_cols=238  Identities=18%  Similarity=0.134  Sum_probs=196.5

Q ss_pred             cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708           94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  173 (397)
                      +++.++++++.++.+|..+. ++|+.|++++|.+..+|.    .+++|++|++++|.+..+|.   .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            47899999999999887665 899999999999888886    67999999999999988887   78999999999999


Q ss_pred             CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708          174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE  253 (397)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  253 (397)
                      +...++   .+++|+.|++++|.++.+|..   +++|++|++++ +.++.+|.    .+++|+.|++.+|.+.+      
T Consensus       113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~------  175 (622)
T 3g06_A          113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTS------  175 (622)
T ss_dssp             CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC------
T ss_pred             CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCC------
Confidence            876655   678999999999999999874   48999999999 56677764    35789999999999875      


Q ss_pred             ccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cc
Q 047708          254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DM  332 (397)
Q Consensus       254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~  332 (397)
                            ++   ..+++|+.|++++|.+..+|..  +++|+.|+++.|....         ++.    .+++|+.|++ ++
T Consensus       176 ------l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~---------l~~----~~~~L~~L~Ls~N  231 (622)
T 3g06_A          176 ------LP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS---------LPA----LPSGLKELIVSGN  231 (622)
T ss_dssp             ------CC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS---------CCC----CCTTCCEEECCSS
T ss_pred             ------Cc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccc---------cCC----CCCCCCEEEccCC
Confidence                  22   4578999999999998887753  5789999998776432         111    2578999999 78


Q ss_pred             ccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecC
Q 047708          333 RISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNS  391 (397)
Q Consensus       333 ~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~  391 (397)
                      .++.+|..    +++|++|+|++ +.++.++.     .+++|+.|++++| .++.+|.+
T Consensus       232 ~L~~lp~~----l~~L~~L~Ls~-N~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~  279 (622)
T 3g06_A          232 RLTSLPVL----PSELKELMVSG-NRLTSLPM-----LPSGLLSLSVYRN-QLTRLPES  279 (622)
T ss_dssp             CCSCCCCC----CTTCCEEECCS-SCCSCCCC-----CCTTCCEEECCSS-CCCSCCGG
T ss_pred             ccCcCCCC----CCcCcEEECCC-CCCCcCCc-----ccccCcEEeCCCC-CCCcCCHH
Confidence            88888822    26999999998 57777762     6799999999998 67788764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=3.4e-19  Score=168.92  Aligned_cols=262  Identities=18%  Similarity=0.129  Sum_probs=167.6

Q ss_pred             ccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCc
Q 047708           93 EDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDC  172 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  172 (397)
                      +++++|++++|.+..+|...++++|+.|++++|.+..+|..    ..+|++|++++|.+..+| .++.+++|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            68999999999999998655899999999999997777642    458999999999998887 5899999999999999


Q ss_pred             cCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC
Q 047708          173 RRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE  252 (397)
Q Consensus       173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  252 (397)
                      .+.+.+...   ++|++|++++|.++.+| .++.+++|++|++++ +.++.+|..    +++|++|++++|.+.+ +|..
T Consensus       206 ~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~-N~l~~l~~~----~~~L~~L~l~~N~l~~-l~~~  275 (454)
T 1jl5_A          206 SLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADN-NLLKTLPDL----PPSLEALNVRDNYLTD-LPEL  275 (454)
T ss_dssp             CCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCSC----CTTCCEEECCSSCCSC-CCCC
T ss_pred             cCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCC-CcCCccccc----ccccCEEECCCCcccc-cCcc
Confidence            886644322   58899999999888888 488899999999988 556666642    4778888888887765 2211


Q ss_pred             CccC-----ccccccccC-CCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708          253 EDSS-----SNAKFIELG-SLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM  326 (397)
Q Consensus       253 ~~~~-----~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~  326 (397)
                      ...-     ....+..+. -.++|+.|++++|.+..++..  .++|+.|+++.|....         ++    ..+++|+
T Consensus       276 ~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~---------lp----~~~~~L~  340 (454)
T 1jl5_A          276 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE---------LP----ALPPRLE  340 (454)
T ss_dssp             CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSC---------CC----CCCTTCC
T ss_pred             cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCC--cCcCCEEECCCCcccc---------cc----ccCCcCC
Confidence            0000     000000000 013555555555554433211  2578888887765432         11    1257899


Q ss_pred             ceec-ccccccchHHHHHHHhhccceecccCCChhh---hhhccccCCC-------------CCccEEEEeccCCce--E
Q 047708          327 GLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLEN---IVSDLANDGF-------------NELMFLGIFGCNEMK--C  387 (397)
Q Consensus       327 ~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~---l~~~~~~~~~-------------~~L~~L~i~~c~~L~--~  387 (397)
                      .|++ ++.++.+|.    .+++|++|+++++ .+..   +|..+  +.+             ++|+.|++++++--.  .
T Consensus       341 ~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l--~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~  413 (454)
T 1jl5_A          341 RLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESV--EDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD  413 (454)
T ss_dssp             EEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTC--CEEECCC---------------------------
T ss_pred             EEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHH--HhhhhcccccccccccCcCCEEECCCCcCCcccc
Confidence            9999 788888987    2379999999984 4544   33222  233             889999999986444  5


Q ss_pred             eecC
Q 047708          388 LLNS  391 (397)
Q Consensus       388 i~~~  391 (397)
                      +|.+
T Consensus       414 iP~s  417 (454)
T 1jl5_A          414 IPES  417 (454)
T ss_dssp             ----
T ss_pred             chhh
Confidence            6654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=5e-19  Score=156.38  Aligned_cols=189  Identities=24%  Similarity=0.368  Sum_probs=161.2

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS  156 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  156 (397)
                      .+..+..+|.. ..++++.|+++++.+..++.. + ++++|+.|++++|.+..++..+|..+++|++|++++|.+..+|.
T Consensus        24 ~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~  102 (270)
T 2o6q_A           24 SSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI  102 (270)
T ss_dssp             TTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence            34455555543 346799999999999997753 3 89999999999999999999888999999999999999987765


Q ss_pred             -hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          157 -SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       157 -~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                       .+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...+..++
T Consensus       103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~  181 (270)
T 2o6q_A          103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLT  181 (270)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred             hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCC
Confidence             56889999999999999988776 689999999999999999988764 78999999999999 677778877688999


Q ss_pred             CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCC
Q 047708          234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNG  280 (397)
Q Consensus       234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  280 (397)
                      +|++|++++|.+...           ....+..+++|+.|++++|..
T Consensus       182 ~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          182 ELKTLKLDNNQLKRV-----------PEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TCCEEECCSSCCSCC-----------CTTTTTTCTTCCEEECCSSCB
T ss_pred             CcCEEECCCCcCCcC-----------CHHHhccccCCCEEEecCCCe
Confidence            999999999988752           234577889999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=2e-22  Score=182.09  Aligned_cols=55  Identities=20%  Similarity=0.128  Sum_probs=36.5

Q ss_pred             cccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          322 CSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       322 ~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      +++|+.|++ ++.++.+|.++.   ++|++|++++ +.++.++.   ...+++|++|++++++
T Consensus       252 l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~-N~l~~~p~---~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSY-NRLDRNPS---PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CTTCCEEECTTSCCSSCCSSCC---SEEEEEECCS-SCCCSCCC---TTTSCEEEEEECTTCT
T ss_pred             cCCCCEEECCCCccChhhhhcc---CCceEEECCC-CCCCCChh---HhhCCCCCEEeccCCC
Confidence            344555555 445555665554   4888888887 56777652   4578888888888875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=1.4e-20  Score=180.06  Aligned_cols=232  Identities=15%  Similarity=0.102  Sum_probs=177.4

Q ss_pred             ccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708           91 KFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS  168 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  168 (397)
                      .+++++.|++++|.+..+++ .+ .+++|+.|++++|.+...++  +..+++|++|++++|.+..+|.    .++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence            45689999999999988654 33 88999999999999776655  7899999999999998866553    37899999


Q ss_pred             ccCccCcCCCccccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      +++|.+...++.  .+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+.+.+++|++|++++|.+.+
T Consensus       106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            999988666543  468899999999998865 55788899999999999444333454433478999999999999875


Q ss_pred             cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708          248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM  326 (397)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~  326 (397)
                      .             .....+++|+.|++++|.+..+|..+. +++|+.|+++.|.... . +   ..+..     +++|+
T Consensus       184 ~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-l-p---~~l~~-----l~~L~  240 (487)
T 3oja_A          184 V-------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I-E---KALRF-----SQNLE  240 (487)
T ss_dssp             E-------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E-C---TTCCC-----CTTCC
T ss_pred             c-------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-c-c---hhhcc-----CCCCC
Confidence            2             334468899999999999888888877 8999999998876542 1 1   12222     67888


Q ss_pred             ceec-ccccc--cchHHHHHHHhhccceecc
Q 047708          327 GLSQ-DMRIS--GVHSWIKNLLLRSEILALV  354 (397)
Q Consensus       327 ~L~l-~~~~~--~lp~~~~~~~~~L~~L~l~  354 (397)
                      .|++ ++.+.  .+|.++..+ +.|+.+++.
T Consensus       241 ~L~l~~N~l~c~~~~~~~~~l-~~L~~l~~~  270 (487)
T 3oja_A          241 HFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQ  270 (487)
T ss_dssp             EEECTTCCBCHHHHHHHHTTC-HHHHHHHHH
T ss_pred             EEEcCCCCCcCcchHHHHHhC-CCCcEEecc
Confidence            8888 55555  667777665 477777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=7.4e-19  Score=155.45  Aligned_cols=222  Identities=18%  Similarity=0.260  Sum_probs=171.8

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      .+.++..+++..+.+.+......+++|+.|++++|.+..++.  +..+++|++|++++|.+..++ .++.+++|++|+++
T Consensus        17 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred             hHHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence            444555566666666655444477899999999998777765  688999999999999987764 68889999999999


Q ss_pred             CccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccc
Q 047708          171 DCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQ  248 (397)
Q Consensus       171 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  248 (397)
                      +|.+...++ .+..+++|++|++++|.++.+|. .++.+++|++|++++ +.++.++...++.+++|++|++++|.+.+ 
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  171 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQS-  171 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCc-
Confidence            999877766 57899999999999999987765 468899999999999 46777777767889999999999998875 


Q ss_pred             ccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708          249 FEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM  326 (397)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~  326 (397)
                                .....++.+++|++|++++|.+..++.. +. +++|+.|+++.|+....                ++.++
T Consensus       172 ----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----------------~~~l~  225 (272)
T 3rfs_A          172 ----------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----------------CPGIR  225 (272)
T ss_dssp             ----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----------------TTTTH
T ss_pred             ----------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----------------CcHHH
Confidence                      2234467889999999999997777665 56 89999999988765432                55677


Q ss_pred             ceec--ccccccchHHHHH
Q 047708          327 GLSQ--DMRISGVHSWIKN  343 (397)
Q Consensus       327 ~L~l--~~~~~~lp~~~~~  343 (397)
                      .+.+  +...+.+|.+++.
T Consensus       226 ~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          226 YLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             HHHHHHHHTGGGBBCTTSC
T ss_pred             HHHHHHHhCCCcccCcccc
Confidence            7766  3333467765543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.2e-19  Score=179.90  Aligned_cols=121  Identities=22%  Similarity=0.244  Sum_probs=102.3

Q ss_pred             cCCccCCCCC--ccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708           79 AGVELKDWPS--INKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL  154 (397)
Q Consensus        79 ~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  154 (397)
                      .++.+..++.  ...+++|++|++++|.++.+++. + ++++|++|++++|.+..++...|.++++|++|++++|.+..+
T Consensus        60 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l  139 (635)
T 4g8a_A           60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL  139 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred             eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence            3455555543  46789999999999999998764 3 899999999999999999998899999999999999999877


Q ss_pred             Ch-hhcCcccCcEEEccCccCcCC--CccccCCCCCCEEEccCCCCCc
Q 047708          155 PS-SLSFLINLRTLSLHDCRRFGD--LPLIGELSLLEILDLSKSDVSE  199 (397)
Q Consensus       155 ~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~  199 (397)
                      |. .++++++|++|++++|.+...  +..++.+++|++|++++|.++.
T Consensus       140 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            65 589999999999999998654  2378889999999999887653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=8.2e-19  Score=157.97  Aligned_cols=186  Identities=21%  Similarity=0.236  Sum_probs=161.9

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL  158 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  158 (397)
                      .+..+..++....+++|+.|++++|.+..++....+++|+.|++++|.+..++.  +..+++|++|++++|.+..++. +
T Consensus        49 ~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l  125 (308)
T 1h6u_A           49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-L  125 (308)
T ss_dssp             TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-G
T ss_pred             eCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-h
Confidence            345566677788899999999999999998875589999999999999888763  7899999999999999988765 8


Q ss_pred             cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEE
Q 047708          159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL  238 (397)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  238 (397)
                      ..+++|++|++++|.+...+ .+..+++|++|++++|.++.++. +..+++|++|++++ +.++.++.  +..+++|++|
T Consensus       126 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L  200 (308)
T 1h6u_A          126 AGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLPNLIEV  200 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEE
T ss_pred             cCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCCCCCEE
Confidence            99999999999999986554 48899999999999999998876 89999999999999 66777776  8899999999


Q ss_pred             EeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC
Q 047708          239 YMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS  285 (397)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  285 (397)
                      ++++|.+.+.             ..+..+++|+.|++++|.+...|.
T Consensus       201 ~L~~N~l~~~-------------~~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          201 HLKNNQISDV-------------SPLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             ECTTSCCCBC-------------GGGTTCTTCCEEEEEEEEEECCCE
T ss_pred             EccCCccCcc-------------ccccCCCCCCEEEccCCeeecCCe
Confidence            9999998751             247889999999999998766553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=2.6e-19  Score=158.75  Aligned_cols=216  Identities=19%  Similarity=0.187  Sum_probs=169.3

Q ss_pred             eEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCc
Q 047708           97 GISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRF  175 (397)
Q Consensus        97 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~  175 (397)
                      .++..+..+..+|..+ .+.|+.|++++|.+..++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus        11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            4455556677777654 2579999999999888887778999999999999999976654 7889999999999999997


Q ss_pred             CCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCC--CchhhhcCCCCCCEEEeecccccccccC
Q 047708          176 GDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLEL--IPRGVLSRLRKLEELYMSRSFHHWQFEG  251 (397)
Q Consensus       176 ~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~  251 (397)
                      ..++ .+..+++|++|++++|.+..++. .++.+++|++|++++ +.++.  +|.. ++.+++|++|++++|.+.+..  
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~--  165 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY--  165 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC--
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCcCC--
Confidence            7775 78999999999999999997765 689999999999999 45554  5655 899999999999999987622  


Q ss_pred             CCccCccccccccCCCCCCC----EEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708          252 EEDSSSNAKFIELGSLSRLT----SLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM  326 (397)
Q Consensus       252 ~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~  326 (397)
                               ...+..+++|+    +|++++|.+..++.... ..+|+.|+++.|.....         +...+..+++|+
T Consensus       166 ---------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~  227 (276)
T 2z62_A          166 ---------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV---------PDGIFDRLTSLQ  227 (276)
T ss_dssp             ---------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC---------CTTTTTTCCSCC
T ss_pred             ---------HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec---------CHhHhccccccc
Confidence                     23344444454    89999999888877655 67899999998874321         112223377888


Q ss_pred             ceec-ccccc
Q 047708          327 GLSQ-DMRIS  335 (397)
Q Consensus       327 ~L~l-~~~~~  335 (397)
                      .|++ ++.+.
T Consensus       228 ~L~l~~N~~~  237 (276)
T 2z62_A          228 KIWLHTNPWD  237 (276)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEccCCccc
Confidence            8888 44443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=1.7e-19  Score=156.41  Aligned_cols=201  Identities=13%  Similarity=0.213  Sum_probs=159.9

Q ss_pred             cCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCC-CCCCCCC-hh
Q 047708           83 LKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGG-IRGFSLP-SS  157 (397)
Q Consensus        83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~  157 (397)
                      +..+|.  ..++++.|++++|.++.++.. + ++++|+.|++++|. +..++...|.++++|++|++++ +.+..++ ..
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            555555  345799999999999987763 3 88999999999997 8888887789999999999998 8887765 46


Q ss_pred             hcCcccCcEEEccCccCcCCCccccCCCCCC---EEEccCC-CCCccch-hhhCCCCCC-eeecCCCCCCCCCchhhhcC
Q 047708          158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLE---ILDLSKS-DVSEIPI-SFGRLSHLR-LLDLTDCDDLELIPRGVLSR  231 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~lp~-~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~  231 (397)
                      +..+++|++|++++|.+...+ .+..+++|+   +|++++| .++.+|. .+..+++|+ +|++++ +.++.+|...+..
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~  178 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG  178 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT
T ss_pred             hCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC
Confidence            788999999999999886644 477788887   9999999 8888775 478899999 999988 5667888775555


Q ss_pred             CCCCCEEEeeccc-ccccccCCCccCccccccccCCC-CCCCEEEEeccCCCCCCCcccCCCccEEEEEec
Q 047708          232 LRKLEELYMSRSF-HHWQFEGEEDSSSNAKFIELGSL-SRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIG  300 (397)
Q Consensus       232 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  300 (397)
                       ++|++|++++|. +..           .....+..+ ++|+.|++++|.+..+|.. .+++|+.|.+..+
T Consensus       179 -~~L~~L~L~~n~~l~~-----------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          179 -TKLDAVYLNKNKYLTV-----------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             -CEEEEEECTTCTTCCE-----------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred             -CCCCEEEcCCCCCccc-----------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence             889999999985 653           123456777 8999999999998888765 5788888877643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=2.9e-20  Score=177.92  Aligned_cols=236  Identities=15%  Similarity=0.106  Sum_probs=185.8

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL  192 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  192 (397)
                      .+++|+.|++++|.+..+++..|..+++|++|++++|.+...++ ++.+++|++|++++|.+...+    ..++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence            45689999999999888887778999999999999999966554 899999999999999875443    3489999999


Q ss_pred             cCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccC-CCCCCC
Q 047708          193 SKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG-SLSRLT  271 (397)
Q Consensus       193 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~  271 (397)
                      ++|.+..++..  .+++|++|++++ +.++.+++..++.+++|++|++++|.+.+.           .+..+. .+++|+
T Consensus       107 ~~N~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~L~  172 (487)
T 3oja_A          107 ANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV-----------NFAELAASSDTLE  172 (487)
T ss_dssp             CSSCCCCEEEC--CCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEE-----------EGGGGGGGTTTCC
T ss_pred             cCCcCCCCCcc--ccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCc-----------ChHHHhhhCCccc
Confidence            99999987653  578999999999 556666554488999999999999999873           344554 689999


Q ss_pred             EEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccc
Q 047708          272 SLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEI  350 (397)
Q Consensus       272 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~  350 (397)
                      +|++++|.+..++....+++|+.|+++.|.... .++    .+..     +++|+.|++ ++.+..+|.++..+ ++|+.
T Consensus       173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~----~~~~-----l~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~  241 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGP----EFQS-----AAGVTWISLRNNKLVLIEKALRFS-QNLEH  241 (487)
T ss_dssp             EEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECG----GGGG-----GTTCSEEECTTSCCCEECTTCCCC-TTCCE
T ss_pred             EEecCCCccccccccccCCCCCEEECCCCCCCC-CCH----hHcC-----CCCccEEEecCCcCcccchhhccC-CCCCE
Confidence            999999998888765559999999999887542 222    2333     788999999 88888888877665 69999


Q ss_pred             eecccCCCh-hhhhhccccCCCCCccEEEEe
Q 047708          351 LALVDVNDL-ENIVSDLANDGFNELMFLGIF  380 (397)
Q Consensus       351 L~l~~c~~l-~~l~~~~~~~~~~~L~~L~i~  380 (397)
                      |++++++-. ..++.  ....++.|+.+.+.
T Consensus       242 L~l~~N~l~c~~~~~--~~~~l~~L~~l~~~  270 (487)
T 3oja_A          242 FDLRGNGFHCGTLRD--FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EECTTCCBCHHHHHH--HHTTCHHHHHHHHH
T ss_pred             EEcCCCCCcCcchHH--HHHhCCCCcEEecc
Confidence            999986544 13322  22356666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=2.7e-18  Score=149.93  Aligned_cols=174  Identities=22%  Similarity=0.306  Sum_probs=117.4

Q ss_pred             cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCc
Q 047708           94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDC  172 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~  172 (397)
                      ..+.+++.++.+..+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            34667777777777776553 57777788777777666666677777777777777775543 34667777777777777


Q ss_pred             cCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          173 RRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       173 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      .+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...++.+++|++|++++|.+.+   
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---  169 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQS---  169 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCc---
Confidence            7766555 566777777777777777766653 46677777777777 45566665546667777777777776654   


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCC
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNG  280 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  280 (397)
                              .....+..+++|+.|++++|.+
T Consensus       170 --------~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          170 --------VPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             --------CCTTTTTTCTTCCEEECCSCCB
T ss_pred             --------cCHHHHhCCCCCCEEEeeCCce
Confidence                    1123455566666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.8e-18  Score=154.33  Aligned_cols=177  Identities=26%  Similarity=0.298  Sum_probs=131.2

Q ss_pred             CCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcE
Q 047708           87 PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRT  166 (397)
Q Consensus        87 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  166 (397)
                      .....+++++.|++.++.+..++....+++|+.|++++|.+..++.  +..+++|++|++++|.+..++. +..+++|++
T Consensus        40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred             cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence            3344677888888888888877765578888888888888777766  6788888888888888766654 777888888


Q ss_pred             EEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          167 LSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       167 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      |++++|.+.. ++.+..+++|++|++++|.++.+ ..+..+++|++|++++ +.++.++.  ++.+++|++|++++|.+.
T Consensus       117 L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          117 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCC
Confidence            8888887754 36677788888888888877776 4677788888888887 45566655  777888888888877765


Q ss_pred             ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC
Q 047708          247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS  284 (397)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  284 (397)
                      .             +..+..+++|+.|++++|.+...|
T Consensus       192 ~-------------l~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          192 D-------------LRALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             B-------------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred             C-------------ChhhccCCCCCEEECcCCcccCCc
Confidence            4             234677777888888777654433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=8.5e-20  Score=164.84  Aligned_cols=80  Identities=20%  Similarity=0.277  Sum_probs=35.5

Q ss_pred             CCcccEEEcCCCCCC-CCChhh--cCcccCcEEEccCccCcCCCccccCC-----CCCCEEEccCCCCCccc-hhhhCCC
Q 047708          138 MKDLKVLDMGGIRGF-SLPSSL--SFLINLRTLSLHDCRRFGDLPLIGEL-----SLLEILDLSKSDVSEIP-ISFGRLS  208 (397)
Q Consensus       138 l~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~~l~  208 (397)
                      +++|++|++++|.+. .+|..+  +.+++|++|++++|.+...++.++.+     ++|++|++++|.+..++ ..++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            444444444444442 334333  44444444444444444432233333     44444444444444333 3444444


Q ss_pred             CCCeeecCC
Q 047708          209 HLRLLDLTD  217 (397)
Q Consensus       209 ~L~~L~l~~  217 (397)
                      +|++|++++
T Consensus       174 ~L~~L~Ls~  182 (312)
T 1wwl_A          174 ALSTLDLSD  182 (312)
T ss_dssp             SCCEEECCS
T ss_pred             CCCEEECCC
Confidence            444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=4e-18  Score=152.00  Aligned_cols=186  Identities=20%  Similarity=0.130  Sum_probs=160.0

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS  157 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  157 (397)
                      +..+..+|.. -.++++.|++++|.+..++. .+ .+++|+.|++++|.+..++..  ..+++|++|++++|.+..+|..
T Consensus        19 ~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~   95 (290)
T 1p9a_G           19 KRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLL   95 (290)
T ss_dssp             TSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchh
Confidence            4455555543 34789999999999988643 33 899999999999998887763  7899999999999999999999


Q ss_pred             hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCC
Q 047708          158 LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL  235 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  235 (397)
                      +..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|...+..+++|
T Consensus        96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENL  174 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTC
T ss_pred             hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCC
Confidence            9999999999999999988876 799999999999999999988764 67899999999999 67888998878899999


Q ss_pred             CEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCC
Q 047708          236 EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGK  281 (397)
Q Consensus       236 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  281 (397)
                      ++|++++|.+..            ++..+..+.+|+.|++++|...
T Consensus       175 ~~L~L~~N~l~~------------ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          175 DTLLLQENSLYT------------IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CEEECCSSCCCC------------CCTTTTTTCCCSEEECCSCCBC
T ss_pred             CEEECCCCcCCc------------cChhhcccccCCeEEeCCCCcc
Confidence            999999999873            4566667789999999998843

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=3.9e-19  Score=154.17  Aligned_cols=182  Identities=18%  Similarity=0.193  Sum_probs=130.9

Q ss_pred             CcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCC-CCCCCh-hhcCcccCcEEEccC-ccCcCCCc-
Q 047708          104 DIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR-GFSLPS-SLSFLINLRTLSLHD-CRRFGDLP-  179 (397)
Q Consensus       104 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~-  179 (397)
                      .++.+|.  -.+.|+.|++++|.+..++...|..+++|++|++++|. +..++. .+.++++|++|++++ |.+...++ 
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            4666776  34588899999999888888778889999999999986 776654 678888899999988 77766655 


Q ss_pred             cccCCCCCCEEEccCCCCCccchhhhCCCCCC---eeecCCCCCCCCCchhhhcCCCCCC-EEEeecccccccccCCCcc
Q 047708          180 LIGELSLLEILDLSKSDVSEIPISFGRLSHLR---LLDLTDCDDLELIPRGVLSRLRKLE-ELYMSRSFHHWQFEGEEDS  255 (397)
Q Consensus       180 ~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~  255 (397)
                      .+..+++|++|++++|.++.+|. +..+++|+   +|++++|..++.++...++.+++|+ +|++++|.+.. +      
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i------  171 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-V------  171 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-E------
T ss_pred             HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-c------
Confidence            67888888888888888888876 77777777   8888885477777776677778888 88887777652 2      


Q ss_pred             CccccccccCCCCCCCEEEEeccC-CCCCCCc-cc-C-CCccEEEEEec
Q 047708          256 SSNAKFIELGSLSRLTSLHIHIPN-GKIMSSD-MS-F-QNLTSFSITIG  300 (397)
Q Consensus       256 ~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~-~-~~L~~L~l~~~  300 (397)
                           .......++|++|++++|. +..++.. +. + ++|+.|+++.+
T Consensus       172 -----~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          172 -----QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             -----CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             -----CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence                 1111122567777777773 5555433 33 4 56666655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.2e-18  Score=155.42  Aligned_cols=191  Identities=19%  Similarity=0.254  Sum_probs=160.1

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      .+.++..+.+....+.++.....+++|+.|++++|.+..++.  +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus        22 ~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~   98 (291)
T 1h6t_A           22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence            344444555666666655444478899999999999888865  6889999999999999988877 9999999999999


Q ss_pred             CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      +|.+.. ++.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++.  ++.+++|++|++++|.+.+.  
T Consensus        99 ~n~l~~-~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~~--  171 (291)
T 1h6t_A           99 ENKVKD-LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI--  171 (291)
T ss_dssp             SSCCCC-GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCCC--
T ss_pred             CCcCCC-ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccccc--
Confidence            999855 557999999999999999999874 688999999999999 56676743  89999999999999998752  


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  303 (397)
                                 ..+..+++|+.|++++|.+..++. +. +++|+.|+++.|...
T Consensus       172 -----------~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          172 -----------VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             -----------GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             -----------hhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence                       228889999999999999888875 66 999999999988754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=3.3e-19  Score=169.93  Aligned_cols=178  Identities=19%  Similarity=0.109  Sum_probs=86.7

Q ss_pred             cCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccCh-----hhhcCCCcccEEEcCCCCCCC-----CChh
Q 047708           94 DLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIPD-----RFFQGMKDLKVLDMGGIRGFS-----LPSS  157 (397)
Q Consensus        94 ~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~-----l~~~  157 (397)
                      ++++|++++|.+..     ++..+ .+++|+.|++++|.+.+...     .++...++|++|++++|.+..     ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46666666666552     23333 55666666666665432211     112234456666666665532     2334


Q ss_pred             hcCcccCcEEEccCccCcCCCc-ccc-----CCCCCCEEEccCCCCCc-----cchhhhCCCCCCeeecCCCCCCCCC--
Q 047708          158 LSFLINLRTLSLHDCRRFGDLP-LIG-----ELSLLEILDLSKSDVSE-----IPISFGRLSHLRLLDLTDCDDLELI--  224 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~-~~~-----~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~--  224 (397)
                      +..+++|++|++++|.+..... .+.     ..++|++|++++|.++.     ++..+..+++|++|++++| .++..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~  244 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGM  244 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHH
Confidence            4455666666666665432211 111     24466666666665553     3455555666666666663 23221  


Q ss_pred             ---chhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC
Q 047708          225 ---PRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN  279 (397)
Q Consensus       225 ---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  279 (397)
                         +......+++|++|++++|.++..-       ...+...+..+++|++|++++|.
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKG-------CGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHH-------HHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHH-------HHHHHHHHhhCCCcceEECCCCC
Confidence               1222224556666666665554310       00123334445555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.7e-17  Score=140.64  Aligned_cols=173  Identities=23%  Similarity=0.353  Sum_probs=114.7

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR  174 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~  174 (397)
                      +.++..++.+..+|... .++|+.|++++|.+..++...|..+++|++|++++|.+..++.. +..+++|++|++++|.+
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            34555556666555433 35677777777776666666667777777777777777666543 46677777777777777


Q ss_pred             cCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC
Q 047708          175 FGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE  252 (397)
Q Consensus       175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  252 (397)
                      ...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...+..+++|++|++++|.+.+     
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----  162 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----  162 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeec-----
Confidence            65555 456777777777777777766543 56777777777777 45556666556777777777777776543     


Q ss_pred             CccCccccccccCCCCCCCEEEEeccC-CCCCCCccc
Q 047708          253 EDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMS  288 (397)
Q Consensus       253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~  288 (397)
                                   .+++|+.|+++.|. .+.+|.+++
T Consensus       163 -------------~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          163 -------------TCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             -------------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             -------------CCCCHHHHHHHHHhCCceeeccCc
Confidence                         34566666666665 445665555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.7e-17  Score=162.07  Aligned_cols=176  Identities=26%  Similarity=0.297  Sum_probs=133.9

Q ss_pred             CCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcE
Q 047708           87 PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRT  166 (397)
Q Consensus        87 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  166 (397)
                      .....+++|+.|++.++.+..++....+++|+.|++++|.+..+++  +..+++|+.|+|++|.+..+| .+..+++|++
T Consensus        37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            3344677788888888888877765578888888888888777766  678888888888888887665 5778888888


Q ss_pred             EEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          167 LSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       167 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      |++++|.+.. ++.+..+++|+.|++++|.+..+ ..+..+++|+.|++++ +.+..+++  +..+++|+.|++++|.+.
T Consensus       114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCC
Confidence            8888887754 46677888888888888888877 5677888888888888 45555555  778888888888888776


Q ss_pred             ccccCCCccCccccccccCCCCCCCEEEEeccCCCCC
Q 047708          247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM  283 (397)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  283 (397)
                      +             +..+..+++|+.|++++|.+...
T Consensus       189 ~-------------l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          189 D-------------LRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             B-------------CGGGTTCTTCSEEECCSEEEECC
T ss_pred             C-------------ChHHccCCCCCEEEccCCcCcCC
Confidence            4             24577788888888888764443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=7.3e-17  Score=140.86  Aligned_cols=167  Identities=25%  Similarity=0.352  Sum_probs=144.6

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-  155 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-  155 (397)
                      .+..+..+|.. -.++++.|++++|.+..++.. + ++++|+.|++++|.+..++...|..+++|++|++++|.+..++ 
T Consensus        22 ~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  100 (251)
T 3m19_A           22 QGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL  100 (251)
T ss_dssp             TTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence            44556666654 347899999999999986653 3 8999999999999988888888899999999999999997776 


Q ss_pred             hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                      ..+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|. .++.+++|++|++++ +.++.++...+..++
T Consensus       101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG  179 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred             hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence            457889999999999999987776 57899999999999999998876 688999999999999 677778776689999


Q ss_pred             CCCEEEeecccccc
Q 047708          234 KLEELYMSRSFHHW  247 (397)
Q Consensus       234 ~L~~L~l~~~~~~~  247 (397)
                      +|+.|++++|.+..
T Consensus       180 ~L~~L~l~~N~~~c  193 (251)
T 3m19_A          180 KLQTITLFGNQFDC  193 (251)
T ss_dssp             TCCEEECCSCCBCT
T ss_pred             CCCEEEeeCCceeC
Confidence            99999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=3.6e-19  Score=165.70  Aligned_cols=39  Identities=21%  Similarity=0.039  Sum_probs=19.2

Q ss_pred             cCCCcccEEEcCCCCCCC-----CChhhcCcccCcEEEccCccC
Q 047708          136 QGMKDLKVLDMGGIRGFS-----LPSSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus       136 ~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~  174 (397)
                      ..+++|++|++++|.+..     +|..+..+++|++|++++|.+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            344555555555555432     344444455555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=3.5e-19  Score=169.83  Aligned_cols=281  Identities=17%  Similarity=0.108  Sum_probs=180.5

Q ss_pred             cccccCceEEccCCCccc--CCCcC-CCC----CccEEEccCCCCccc----ChhhhcCCCcccEEEcCCCCCCCC-Chh
Q 047708           90 NKFEDLTGISLMFNDIHE--VPDEL-ECP----KLQALLLQENSLLVI----PDRFFQGMKDLKVLDMGGIRGFSL-PSS  157 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~--~~~~~-~~~----~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~l-~~~  157 (397)
                      ..++++++|++++|.+.+  +.... .++    +|++|++++|.+.+.    ....+..+++|++|++++|.+... +..
T Consensus        53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  132 (461)
T 1z7x_W           53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL  132 (461)
T ss_dssp             HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred             HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence            345778888888887654  11111 233    688888888875532    234457788888888888876321 222


Q ss_pred             hc-----CcccCcEEEccCccCcCCC----c-cccCCCCCCEEEccCCCCCcc-chhhh-----CCCCCCeeecCCCCCC
Q 047708          158 LS-----FLINLRTLSLHDCRRFGDL----P-LIGELSLLEILDLSKSDVSEI-PISFG-----RLSHLRLLDLTDCDDL  221 (397)
Q Consensus       158 ~~-----~l~~L~~L~l~~~~~~~~~----~-~~~~l~~L~~L~l~~~~~~~l-p~~i~-----~l~~L~~L~l~~~~~~  221 (397)
                      +.     ..++|++|++++|.+....    + .+..+++|++|++++|.+... +..+.     ..++|++|++++| .+
T Consensus       133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l  211 (461)
T 1z7x_W          133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GV  211 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CC
T ss_pred             HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CC
Confidence            22     2456888888888765432    2 456678888888888877632 22222     3568888888885 34


Q ss_pred             CC-----CchhhhcCCCCCCEEEeecccccccccCCCccCccccccc-cCCCCCCCEEEEeccCCCC-----CCCccc-C
Q 047708          222 EL-----IPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE-LGSLSRLTSLHIHIPNGKI-----MSSDMS-F  289 (397)
Q Consensus       222 ~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~-----~~~~~~-~  289 (397)
                      +.     ++.. +..+++|++|++++|.+....       ...+... ...+++|++|++++|.+..     ++..+. +
T Consensus       212 ~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  283 (461)
T 1z7x_W          212 TSDNCRDLCGI-VASKASLRELALGSNKLGDVG-------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK  283 (461)
T ss_dssp             BTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHH-------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHH-HHhCCCccEEeccCCcCChHH-------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence            43     3433 667888999998888765410       0011122 2357899999999998766     566677 8


Q ss_pred             CCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cccccc-----chHHHHHHHhhccceecccCCChhhhh
Q 047708          290 QNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISG-----VHSWIKNLLLRSEILALVDVNDLENIV  363 (397)
Q Consensus       290 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~-----lp~~~~~~~~~L~~L~l~~c~~l~~l~  363 (397)
                      ++|++|+++.|.....    ....+......+.++|+.|++ ++.++.     +|.++... ++|++|+|+++ .+.+..
T Consensus       284 ~~L~~L~Ls~n~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n-~i~~~~  357 (461)
T 1z7x_W          284 ESLKELSLAGNELGDE----GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN-RFLLELQISNN-RLEDAG  357 (461)
T ss_dssp             TTCCEEECTTCCCHHH----HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-SSCCEEECCSS-BCHHHH
T ss_pred             CCcceEECCCCCCchH----HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC-CCccEEEccCC-cccccc
Confidence            9999999998764322    233444433344579999999 666653     45566655 69999999986 566542


Q ss_pred             hc-cc---cCCCCCccEEEEeccCCce
Q 047708          364 SD-LA---NDGFNELMFLGIFGCNEMK  386 (397)
Q Consensus       364 ~~-~~---~~~~~~L~~L~i~~c~~L~  386 (397)
                      .. +.   ....++|++|++++|. +.
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n~-i~  383 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADCD-VS  383 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSC-CC
T ss_pred             HHHHHHHHcCCCCceEEEECCCCC-CC
Confidence            22 11   1236799999999994 44

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=6.2e-18  Score=152.48  Aligned_cols=197  Identities=13%  Similarity=0.063  Sum_probs=123.7

Q ss_pred             cCceEEccCCCccc-----CCCcCCCCCccEEEccCCCCcccChhhh--cCCCcccEEEcCCCCCCC-CC----hhhcCc
Q 047708           94 DLTGISLMFNDIHE-----VPDELECPKLQALLLQENSLLVIPDRFF--QGMKDLKVLDMGGIRGFS-LP----SSLSFL  161 (397)
Q Consensus        94 ~l~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~-l~----~~~~~l  161 (397)
                      .++.+.+..+.+..     +.....+++|+.|++++|.+....+..+  ..+++|++|++++|.+.. .+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            35666666655442     1122244567788887777543333323  677778888888777743 22    233457


Q ss_pred             ccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCc---cch--hhhCCCCCCeeecCCCCCCCCCchh---hhcCC
Q 047708          162 INLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSE---IPI--SFGRLSHLRLLDLTDCDDLELIPRG---VLSRL  232 (397)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~---lp~--~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~l  232 (397)
                      ++|++|++++|.+...++ .++.+++|++|++++|.+..   ++.  .++.+++|++|++++ +.++.++..   .++.+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcC
Confidence            778888888877766665 67777788888888777652   332  235777788888877 445544432   34667


Q ss_pred             CCCCEEEeecccccccccCCCccCccccccccCCC---CCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcc
Q 047708          233 RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL---SRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLA  303 (397)
Q Consensus       233 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  303 (397)
                      ++|++|++++|.+.+..           +..+..+   ++|++|++++|.+..+|..+ +++|+.|+++.|...
T Consensus       224 ~~L~~L~Ls~N~l~~~~-----------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATV-----------NPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLN  285 (310)
T ss_dssp             CCCSSEECTTSCCCCCC-----------CSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCC
T ss_pred             CCCCEEECCCCCCCccc-----------hhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCC
Confidence            77888888877776532           2233333   67778888777777776655 367777777766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=1.3e-18  Score=158.73  Aligned_cols=224  Identities=15%  Similarity=0.038  Sum_probs=118.0

Q ss_pred             CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC--CChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEE
Q 047708          115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS--LPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD  191 (397)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~  191 (397)
                      +.++.|++++|.+...+..+ ..+++|++|++++|.+..  ++..+..+++|++|++++|.+....+ .++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            45566666665544433332 345666666666665532  44555556666666666665443322 455566666666


Q ss_pred             ccCC-CCC--ccchhhhCCCCCCeeecCCCCCCCC--CchhhhcCCC-CCCEEEeeccc--ccccccCCCccCccccccc
Q 047708          192 LSKS-DVS--EIPISFGRLSHLRLLDLTDCDDLEL--IPRGVLSRLR-KLEELYMSRSF--HHWQFEGEEDSSSNAKFIE  263 (397)
Q Consensus       192 l~~~-~~~--~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~  263 (397)
                      +++| .++  .++..+..+++|++|++++|..++.  ++. .+..++ +|++|++++|.  ++.          ..+...
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~----------~~l~~~  217 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQK----------SDLSTL  217 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCH----------HHHHHH
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCH----------HHHHHH
Confidence            6666 455  3555566666666666666534443  232 255566 66666666663  221          123334


Q ss_pred             cCCCCCCCEEEEeccC-C-CCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchH-
Q 047708          264 LGSLSRLTSLHIHIPN-G-KIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHS-  339 (397)
Q Consensus       264 l~~l~~L~~L~l~~~~-~-~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~-  339 (397)
                      +..+++|++|++++|. . ...+..+. +++|++|+++.|.....   ..+..+..     +++|+.|++.+.   ++. 
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~-----~~~L~~L~l~~~---i~~~  286 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP---ETLLELGE-----IPTLKTLQVFGI---VPDG  286 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG---GGGGGGGG-----CTTCCEEECTTS---SCTT
T ss_pred             HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH---HHHHHHhc-----CCCCCEEeccCc---cCHH
Confidence            4556666666666665 2 23344445 66666666666642211   11223333     666666666333   222 


Q ss_pred             HHHHHHhhccceecccCCChhhh
Q 047708          340 WIKNLLLRSEILALVDVNDLENI  362 (397)
Q Consensus       340 ~~~~~~~~L~~L~l~~c~~l~~l  362 (397)
                      .+..+...++.|+++ |+.++..
T Consensus       287 ~~~~l~~~l~~L~l~-~n~l~~~  308 (336)
T 2ast_B          287 TLQLLKEALPHLQIN-CSHFTTI  308 (336)
T ss_dssp             CHHHHHHHSTTSEES-CCCSCCT
T ss_pred             HHHHHHhhCcceEEe-cccCccc
Confidence            233333457777776 4555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=6.5e-19  Score=160.79  Aligned_cols=218  Identities=15%  Similarity=0.096  Sum_probs=164.6

Q ss_pred             CccEEEccCCCCcccChhhhcCC--CcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCC-Cc-cccCCCCCCEEE
Q 047708          116 KLQALLLQENSLLVIPDRFFQGM--KDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD-LP-LIGELSLLEILD  191 (397)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~  191 (397)
                      .++.++++++.+.   +..+..+  +++++|+++++.+...+..+..+++|++|++++|.+... .+ .+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            3567777776544   3345666  889999999999877766688899999999999987543 44 788999999999


Q ss_pred             ccCCCCC-ccchhhhCCCCCCeeecCCCCCCCC--CchhhhcCCCCCCEEEeecc-cccccccCCCccCccccccccCCC
Q 047708          192 LSKSDVS-EIPISFGRLSHLRLLDLTDCDDLEL--IPRGVLSRLRKLEELYMSRS-FHHWQFEGEEDSSSNAKFIELGSL  267 (397)
Q Consensus       192 l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l  267 (397)
                      +++|.++ ..|..++.+++|++|++++|..++.  ++.. ++.+++|++|++++| .+.+.          .+...+..+
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~----------~~~~~~~~l  193 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK----------HVQVAVAHV  193 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH----------HHHHHHHHS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH----------HHHHHHHhc
Confidence            9999888 6778899999999999999756664  4443 788999999999999 76541          234567788


Q ss_pred             C-CCCEEEEeccC--C--CCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchH--
Q 047708          268 S-RLTSLHIHIPN--G--KIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHS--  339 (397)
Q Consensus       268 ~-~L~~L~l~~~~--~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~--  339 (397)
                      + +|++|++++|.  .  ..++..+. +++|+.|+++.|......   .+..+..     +++|+.|++.++-...|.  
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~-----l~~L~~L~l~~~~~~~~~~~  265 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQ-----LNYLQHLSLSRCYDIIPETL  265 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG---GGGGGGG-----CTTCCEEECTTCTTCCGGGG
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH---HHHHHhC-----CCCCCEeeCCCCCCCCHHHH
Confidence            8 99999999984  2  44566666 999999999988743321   1235555     788999999322232333  


Q ss_pred             -HHHHHHhhccceecccC
Q 047708          340 -WIKNLLLRSEILALVDV  356 (397)
Q Consensus       340 -~~~~~~~~L~~L~l~~c  356 (397)
                       .+..+ ++|++|++++|
T Consensus       266 ~~l~~~-~~L~~L~l~~~  282 (336)
T 2ast_B          266 LELGEI-PTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGC-TTCCEEECTTS
T ss_pred             HHHhcC-CCCCEEeccCc
Confidence             34444 69999999988

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=8.9e-18  Score=154.08  Aligned_cols=193  Identities=17%  Similarity=0.128  Sum_probs=107.4

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCCh-hhcCcccCcE-EEccCc
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPS-SLSFLINLRT-LSLHDC  172 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~-~~~~l~~L~~-L~l~~~  172 (397)
                      ++++.++++++.+|..+ .+.++.|++++|.+..++...|.++++|++|++++|.+ +.+|. .+.+++++++ +.+..|
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            34555555666666544 34566666666666666666566666666666666665 33433 3455665554 334445


Q ss_pred             cCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC-CCCEEEeecccccccc
Q 047708          173 RRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR-KLEELYMSRSFHHWQF  249 (397)
Q Consensus       173 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~  249 (397)
                      .+...++ .+..+++|++|++++|.++.+|. .+....++..|++.+++.+..++...+..+. .++.|++++|.+..  
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--  168 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--  168 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--
Confidence            5544444 55666666666666666665543 3334455566666555566665554444443 46666666666542  


Q ss_pred             cCCCccCccccccccCCCCCCCEEEEec-cCCCCCCCc-cc-CCCccEEEEEecC
Q 047708          250 EGEEDSSSNAKFIELGSLSRLTSLHIHI-PNGKIMSSD-MS-FQNLTSFSITIGD  301 (397)
Q Consensus       250 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~-~~-~~~L~~L~l~~~~  301 (397)
                                +........+|++|.+.+ |.++.+|.. +. +++|+.|+++.|.
T Consensus       169 ----------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          169 ----------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             ----------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             ----------CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence                      222333345566666653 345555543 33 5666666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=150.28  Aligned_cols=196  Identities=15%  Similarity=0.094  Sum_probs=153.4

Q ss_pred             cccCceEEccCCCccc-CCCc---CCCCCccEEEccCCCCccc----ChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcc
Q 047708           92 FEDLTGISLMFNDIHE-VPDE---LECPKLQALLLQENSLLVI----PDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLI  162 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~  162 (397)
                      .++++.|++++|.+.+ .|..   ..+++|++|++++|.+...    +...+..+++|++|++++|.+..+ +..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4569999999999886 4444   4689999999999996542    223345799999999999999665 46788999


Q ss_pred             cCcEEEccCccCcCC---Cc--cccCCCCCCEEEccCCCCCccchh----hhCCCCCCeeecCCCCCCCCCchhhhcCC-
Q 047708          163 NLRTLSLHDCRRFGD---LP--LIGELSLLEILDLSKSDVSEIPIS----FGRLSHLRLLDLTDCDDLELIPRGVLSRL-  232 (397)
Q Consensus       163 ~L~~L~l~~~~~~~~---~~--~~~~l~~L~~L~l~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~~~~~~~~l-  232 (397)
                      +|++|++++|.+.+.   ++  .+..+++|++|++++|.++.+|..    +..+++|++|++++|......|.. ++.+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence            999999999987542   22  457899999999999999877653    578899999999995443434655 5555 


Q ss_pred             --CCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708          233 --RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       233 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  303 (397)
                        ++|++|++++|.+.. +           +..+.  ++|++|++++|.+..+|. +. +++|+.|+++.|+..
T Consensus       249 ~~~~L~~L~Ls~N~l~~-l-----------p~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQ-V-----------PKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCCS-C-----------CSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCCc-h-----------hhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence              799999999999873 3           33332  799999999999888876 45 999999999877643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=3.2e-18  Score=159.28  Aligned_cols=265  Identities=16%  Similarity=0.087  Sum_probs=186.0

Q ss_pred             cCCCcC-CCCCccEEEccCCCCcccChh----hhcCCCcccEEEcCCCCCC----CCChhh-------cCcccCcEEEcc
Q 047708          107 EVPDEL-ECPKLQALLLQENSLLVIPDR----FFQGMKDLKVLDMGGIRGF----SLPSSL-------SFLINLRTLSLH  170 (397)
Q Consensus       107 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~----~l~~~~-------~~l~~L~~L~l~  170 (397)
                      .++..+ .++.|+.|++++|.+......    .+..+++|++|++++|.+.    .+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            344444 678899999999986553322    2568999999999998664    334444       688999999999


Q ss_pred             CccCcCC----Cc-cccCCCCCCEEEccCCCCC-----ccchhhhCC---------CCCCeeecCCCCCC-CCCch--hh
Q 047708          171 DCRRFGD----LP-LIGELSLLEILDLSKSDVS-----EIPISFGRL---------SHLRLLDLTDCDDL-ELIPR--GV  228 (397)
Q Consensus       171 ~~~~~~~----~~-~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~~~--~~  228 (397)
                      +|.+...    ++ .+..+++|++|++++|.+.     .++..+..+         ++|++|++++|... ..++.  ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            9998762    33 7789999999999999986     233444445         89999999995433 23442  23


Q ss_pred             hcCCCCCCEEEeecccccccccCCCccCcccccc-ccCCCCCCCEEEEeccCC-----CCCCCccc-CCCccEEEEEecC
Q 047708          229 LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI-ELGSLSRLTSLHIHIPNG-----KIMSSDMS-FQNLTSFSITIGD  301 (397)
Q Consensus       229 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~~~~~~-~~~L~~L~l~~~~  301 (397)
                      +..+++|++|++++|.+...       ....... .+..+++|++|++++|.+     ..+|..+. +++|++|+++.|.
T Consensus       183 l~~~~~L~~L~L~~n~l~~~-------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPE-------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHH-------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HHhCCCcCEEECcCCCCCHh-------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            67899999999999988631       0001233 778899999999999997     56777777 9999999999887


Q ss_pred             cccchhhhHHHHhhhhcc-cccccccceec-cccccc-----chHHHHHHHhhccceecccCCChhhhh--hccccCCCC
Q 047708          302 LAAGFISAAIEVFSRKFK-KRCSRAMGLSQ-DMRISG-----VHSWIKNLLLRSEILALVDVNDLENIV--SDLANDGFN  372 (397)
Q Consensus       302 ~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l-~~~~~~-----lp~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~~  372 (397)
                      .....    ...++..+. ..+++|+.|++ ++.++.     +|..+....++|++|++++|. +....  .......++
T Consensus       256 i~~~~----~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~  330 (386)
T 2ca6_A          256 LSARG----AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFS  330 (386)
T ss_dssp             CCHHH----HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHH
T ss_pred             Cchhh----HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhh
Confidence            54321    112222111 23788999999 777776     888885543799999999854 33322  111234567


Q ss_pred             CccEEEEeccC
Q 047708          373 ELMFLGIFGCN  383 (397)
Q Consensus       373 ~L~~L~i~~c~  383 (397)
                      +++.+++....
T Consensus       331 ~~~~~~l~~~d  341 (386)
T 2ca6_A          331 TRGRGELDELD  341 (386)
T ss_dssp             HHTCCEECCCC
T ss_pred             hcCcchhhhcc
Confidence            77766665443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=9e-18  Score=164.01  Aligned_cols=191  Identities=19%  Similarity=0.243  Sum_probs=161.8

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      .+..+..+.+..+.+..+.....++.|+.|++++|.+..++.  +..+++|+.|+|++|.+..++. +..+++|++|+++
T Consensus        19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred             HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence            445556666776676665555578899999999999888874  6899999999999999988876 8999999999999


Q ss_pred             CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      +|.+.. ++.+..+++|++|++++|.+..++ .+..+++|+.|++++ +.++.++.  ++.+++|+.|++++|.+.+.  
T Consensus        96 ~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~~--  168 (605)
T 1m9s_A           96 ENKIKD-LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI--  168 (605)
T ss_dssp             SSCCCC-CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCCCCC--
T ss_pred             CCCCCC-ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcCCCc--
Confidence            998854 568999999999999999999875 688999999999999 56666643  89999999999999998762  


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  303 (397)
                                .. +..+++|+.|++++|.+..++ .+. +++|+.|+++.|...
T Consensus       169 ----------~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          169 ----------VP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             ----------GG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred             ----------hh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence                      22 788999999999999988886 466 999999999987654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=1.8e-16  Score=153.23  Aligned_cols=179  Identities=18%  Similarity=0.266  Sum_probs=150.2

Q ss_pred             cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708           94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  173 (397)
                      +++.|+++++.+.++|..+ +++|+.|++++|.+..+|    ..+++|++|++++|.+..+|. +..  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            7899999999999988765 488999999999988888    457999999999999988888 665  99999999999


Q ss_pred             CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708          174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE  253 (397)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  253 (397)
                      +...++   .+++|+.|++++|.++.+|.   .+++|++|++++ +.++.+|.  +.  ++|+.|++++|.+.. +|   
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~-lp---  196 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLES-LP---  196 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSS-CC---
T ss_pred             CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCc-hh---
Confidence            877544   78999999999999999987   678999999999 56677887  55  899999999998873 32   


Q ss_pred             ccCccccccccCC-----CCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCccc
Q 047708          254 DSSSNAKFIELGS-----LSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAA  304 (397)
Q Consensus       254 ~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~  304 (397)
                              . +..     .+.|+.|++++|.+..+|..+. +++|+.|+++.|....
T Consensus       197 --------~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          197 --------A-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             --------C-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             --------h-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence                    2 222     2333999999999999999888 9999999999887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.3e-17  Score=146.44  Aligned_cols=169  Identities=19%  Similarity=0.158  Sum_probs=96.8

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      .+.++..+++..+.+.+++....+++|+.|++++|.+..++.  +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            344455555555555555433355666666666666555552  4566666666666666655554 5666666666666


Q ss_pred             CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      +|.+...++ +.. ++|++|++++|.++.++ .+..+++|++|++++ +.++.++.  ++.+++|++|++++|.+.+   
T Consensus        94 ~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~---  164 (263)
T 1xeu_A           94 RNRLKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN---  164 (263)
T ss_dssp             SSCCSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB---
T ss_pred             CCccCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc---
Confidence            666544332 222 66666666666666554 356666666666666 44555542  5666666666666666553   


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCCC
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGK  281 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  281 (397)
                                ...+..+++|+.|++++|...
T Consensus       165 ----------~~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          165 ----------TGGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ----------CTTSTTCCCCCEEEEEEEEEE
T ss_pred             ----------hHHhccCCCCCEEeCCCCccc
Confidence                      144555666666666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.5e-16  Score=135.33  Aligned_cols=151  Identities=25%  Similarity=0.316  Sum_probs=127.4

Q ss_pred             CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCcc
Q 047708           95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCR  173 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~  173 (397)
                      -+.++.+++.+..+|.... ++|+.|++++|.+..+++..|..+++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            4668888888888886553 789999999999888877778899999999999999987765 45789999999999998


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      +...++ .+..+++|++|++++|.++.+|..+..+++|++|++++ +.++.++...+..+++|+.|++.+|.+..
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            877766 57889999999999999999998899999999999998 67777877668889999999998888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=1.2e-17  Score=164.18  Aligned_cols=271  Identities=13%  Similarity=0.133  Sum_probs=168.5

Q ss_pred             ccccCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCC----------------
Q 047708           91 KFEDLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG----------------  148 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------------  148 (397)
                      .+++|+.|+++++.+..     ++... ++++|+.|++++|.+..++. .+..+++|+.|+++.                
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            56889999998888763     33333 67889999998888666553 356677777777653                


Q ss_pred             -----------CCCCCCChhhcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCC--ccchhhhCCCCCCee
Q 047708          149 -----------IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLL  213 (397)
Q Consensus       149 -----------~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L  213 (397)
                                 +....+|..+..+++|++|++++|.+.....  .+..+++|++|++.+ .+.  .++.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEE
Confidence                       2223344455556677777777766422211  246677777777763 222  344444567777888


Q ss_pred             ecCC----------CCCCCCCch-hhhcCCCCCCEEEeecccccccccCCCccCccccccccCC-CCCCCEEEEe----c
Q 047708          214 DLTD----------CDDLELIPR-GVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS-LSRLTSLHIH----I  277 (397)
Q Consensus       214 ~l~~----------~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~----~  277 (397)
                      ++++          |+.++.... .....+++|++|++..+.+++           ..+..+.. +++|++|+++    .
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~-----------~~~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN-----------ESLESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH-----------HHHHHHHHHCCSCCEEEEEECSCC
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH-----------HHHHHHHhhCCCCcEEEEeecCCC
Confidence            7774          555553221 223457888888886666654           33444444 7889999997    3


Q ss_pred             cCCCCCCC------ccc-CCCccEEEEEecCcc-cchhhhHHHHhhhhcccccccccceec-cccccc--chHHHHHHHh
Q 047708          278 PNGKIMSS------DMS-FQNLTSFSITIGDLA-AGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISG--VHSWIKNLLL  346 (397)
Q Consensus       278 ~~~~~~~~------~~~-~~~L~~L~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~--lp~~~~~~~~  346 (397)
                      +.++..|.      .+. +++|++|+++.|... ..   ..+..+..    .+++|+.|++ ++.++.  ++..+..+ +
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~~-~  488 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQ----YSPNVRWMLLGYVGESDEGLMEFSRGC-P  488 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHH----SCTTCCEEEECSCCSSHHHHHHHHTCC-T
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHH----hCccceEeeccCCCCCHHHHHHHHhcC-c
Confidence            34554332      244 889999999876531 11   12333332    3678999999 555542  44444444 6


Q ss_pred             hccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708          347 RSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       347 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      +|++|+|++|. +...........+++|++|++++|+
T Consensus       489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            89999999987 5443212223478999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=7.8e-17  Score=135.24  Aligned_cols=128  Identities=21%  Similarity=0.251  Sum_probs=62.2

Q ss_pred             cCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcC-CCccccCCCCCCEEEccCCCCC-ccchhhhCCCCCCee
Q 047708          136 QGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFG-DLPLIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLL  213 (397)
Q Consensus       136 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L  213 (397)
                      ..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .++.++.+++|++|++++|.++ ..|..++.+++|++|
T Consensus        63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            44444444444444333332 34445555555555554433 2234455555555555555554 244455555555555


Q ss_pred             ecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC
Q 047708          214 DLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN  279 (397)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  279 (397)
                      ++++|..++.++.  ++.+++|++|++++|.+..             +..+..+++|++|++++|.
T Consensus       142 ~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-------------~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          142 DLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-------------YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-------------CTTGGGCSSCCEEEECBC-
T ss_pred             EccCCCCccccHh--hcCCCCCCEEECCCCCCcC-------------hHHhccCCCCCEEEeeCcc
Confidence            5555433444442  5555555555555555442             1134455555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=2.9e-17  Score=161.46  Aligned_cols=287  Identities=15%  Similarity=0.105  Sum_probs=157.2

Q ss_pred             ccccCceEEccCCCcccCCC-----cC-CCCCccEEEccCCCCcccC----hhhhcCCCcccEEEcCCCCCCCCChhhcC
Q 047708           91 KFEDLTGISLMFNDIHEVPD-----EL-ECPKLQALLLQENSLLVIP----DRFFQGMKDLKVLDMGGIRGFSLPSSLSF  160 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~-----~~-~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~l~~~~~~  160 (397)
                      .+++|++|++.+|.+.+...     .. .+++|+.|++++|.+..+.    ..++.++++|++|+++++.+..+|..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            56778888888876654321     11 5778888888887754222    23356788888888888877777777888


Q ss_pred             cccCcEEEccCccCc----CCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCC-CchhhhcCCCCC
Q 047708          161 LINLRTLSLHDCRRF----GDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLEL-IPRGVLSRLRKL  235 (397)
Q Consensus       161 l~~L~~L~l~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L  235 (397)
                      +++|++|+++.....    .....+..+++|+.+++..+....+|..+..+++|++|++++|. ++. .....++.+++|
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCC
Confidence            888888888754322    11225667778888888776666777777788888888888866 332 222335677777


Q ss_pred             CEEEeecccccccccCC------------C-------------ccCccccccccCCCCCCCEEEEeccCCCC-CCCccc-
Q 047708          236 EELYMSRSFHHWQFEGE------------E-------------DSSSNAKFIELGSLSRLTSLHIHIPNGKI-MSSDMS-  288 (397)
Q Consensus       236 ~~L~l~~~~~~~~~~~~------------~-------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~-  288 (397)
                      ++|++..+.....++..            .             .............+++|++|++.++.+.. .+..+. 
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            77777633211100000            0             00000011112224444555444433211 111122 


Q ss_pred             -CCCccEEEEEecC---cccch-hhhHHHHhhhhcccccccccceec---ccccc-cchHHHHHHHhhccceecccCCCh
Q 047708          289 -FQNLTSFSITIGD---LAAGF-ISAAIEVFSRKFKKRCSRAMGLSQ---DMRIS-GVHSWIKNLLLRSEILALVDVNDL  359 (397)
Q Consensus       289 -~~~L~~L~l~~~~---~~~~~-~~~~~~~l~~~~~~~~~~L~~L~l---~~~~~-~lp~~~~~~~~~L~~L~l~~c~~l  359 (397)
                       +++|++|+++.+.   ...+. .+.++..+.    ..+++|+.|++   .+.++ ..+..+....++|++|+|++|. +
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~----~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l  475 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLL----IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-E  475 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH----HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-S
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHH----HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-C
Confidence             4555555555322   11110 000111111    12666777777   22122 2233343323578888887643 5


Q ss_pred             hhhhhccccCCCCCccEEEEeccC
Q 047708          360 ENIVSDLANDGFNELMFLGIFGCN  383 (397)
Q Consensus       360 ~~l~~~~~~~~~~~L~~L~i~~c~  383 (397)
                      ..........++++|++|+|++|+
T Consensus       476 ~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          476 SDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             CHHHHHHHHhcCcccCeeeccCCC
Confidence            442212233578999999999987

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.1e-16  Score=134.21  Aligned_cols=152  Identities=19%  Similarity=0.210  Sum_probs=131.1

Q ss_pred             cccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC-CChhhcCcccCcEEE
Q 047708           90 NKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTLS  168 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~  168 (397)
                      ..+++++.|+++++.+..++....+++|+.|++++|.+..++.  +..+++|++|++++|.+.. .+..++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4788999999999999998865589999999999998776653  7899999999999999954 677899999999999


Q ss_pred             ccCccCcCCCc-cccCCCCCCEEEccCCC-CCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          169 LHDCRRFGDLP-LIGELSLLEILDLSKSD-VSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       169 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      +++|.+....+ .++.+++|++|++++|. ++.+| .+..+++|++|++++ +.++.++.  +..+++|++|++++|.+.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCcccC
Confidence            99999976444 78999999999999997 88887 789999999999999 56677773  899999999999999875


Q ss_pred             c
Q 047708          247 W  247 (397)
Q Consensus       247 ~  247 (397)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=4.8e-16  Score=132.70  Aligned_cols=149  Identities=24%  Similarity=0.344  Sum_probs=111.5

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccC
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~  174 (397)
                      +.++..++.++.+|..+. +.++.|++++|.+..++...|..+++|++|++++|.+..+ |..+.++++|++|++++|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            567777777777776543 6788888888887777776678888888888888888555 66778888888888888887


Q ss_pred             cCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          175 FGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       175 ~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.++...+..+++|++|++++|.+.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            76665 467788888888888877755 45677778888888877 5566666655777777788877777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=3.6e-16  Score=132.40  Aligned_cols=162  Identities=22%  Similarity=0.238  Sum_probs=137.2

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS  157 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  157 (397)
                      +..+..+|.. ..++++.|+++++.+..++...  .+++|+.|++++|.+..++...|..+++|++|++++|.+..++..
T Consensus        16 ~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   94 (208)
T 2o6s_A           16 SQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG   94 (208)
T ss_dssp             SSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence            3344444433 4578999999999999877643  899999999999999999988889999999999999999877664


Q ss_pred             -hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCC
Q 047708          158 -LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRK  234 (397)
Q Consensus       158 -~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  234 (397)
                       +..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|..        .+.+++
T Consensus        95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~  166 (208)
T 2o6s_A           95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG  166 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTT
T ss_pred             HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCC
Confidence             6889999999999999987776 578999999999999999988764 78899999999999532        346778


Q ss_pred             CCEEEeeccccccccc
Q 047708          235 LEELYMSRSFHHWQFE  250 (397)
Q Consensus       235 L~~L~l~~~~~~~~~~  250 (397)
                      |+.|+++.|.+.+.+|
T Consensus       167 l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          167 IRYLSEWINKHSGVVR  182 (208)
T ss_dssp             THHHHHHHHHCTTTBB
T ss_pred             HHHHHHHHHhCCceee
Confidence            9999999999998654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=2.2e-17  Score=152.24  Aligned_cols=235  Identities=13%  Similarity=0.126  Sum_probs=158.8

Q ss_pred             cccCceEEccCCCcccCCC-----cC-CCC-CccEEEccCCCCcccChhhhcCC-----CcccEEEcCCCCCCCCC-hh-
Q 047708           92 FEDLTGISLMFNDIHEVPD-----EL-ECP-KLQALLLQENSLLVIPDRFFQGM-----KDLKVLDMGGIRGFSLP-SS-  157 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l~-~~-  157 (397)
                      .++++.|++++|.+...+.     .+ .++ +|+.|++++|.+.......+..+     ++|++|++++|.+...+ .. 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            3459999999999888653     23 677 89999999999777655444443     89999999999985443 33 


Q ss_pred             ---hcCc-ccCcEEEccCccCcCCCc-c----ccC-CCCCCEEEccCCCCC-----ccchhhhCCC-CCCeeecCCCCCC
Q 047708          158 ---LSFL-INLRTLSLHDCRRFGDLP-L----IGE-LSLLEILDLSKSDVS-----EIPISFGRLS-HLRLLDLTDCDDL  221 (397)
Q Consensus       158 ---~~~l-~~L~~L~l~~~~~~~~~~-~----~~~-l~~L~~L~l~~~~~~-----~lp~~i~~l~-~L~~L~l~~~~~~  221 (397)
                         +..+ ++|++|++++|.+....+ .    +.. .++|++|++++|.++     .++..+..++ +|++|++++| .+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l  179 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NL  179 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CC
Confidence               4444 799999999999866654 2    334 368999999999887     4555666666 8999999994 45


Q ss_pred             CCCchh----hhcCC-CCCCEEEeecccccccccCCCccCccccccccCC-CCCCCEEEEeccCCCCCCC-----ccc-C
Q 047708          222 ELIPRG----VLSRL-RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS-LSRLTSLHIHIPNGKIMSS-----DMS-F  289 (397)
Q Consensus       222 ~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~-----~~~-~  289 (397)
                      +.....    .+..+ ++|++|++++|.+....       ...+...+.. .++|++|++++|.++..+.     .+. +
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l  252 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL  252 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence            444432    24455 59999999999876411       1123444544 3589999999998766543     234 7


Q ss_pred             CCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cccccc
Q 047708          290 QNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISG  336 (397)
Q Consensus       290 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~  336 (397)
                      ++|+.|+++.|..... .+..+..+...+ ..+.+|+.|++ ++.+..
T Consensus       253 ~~L~~L~L~~n~l~~i-~~~~~~~l~~~~-~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          253 KHLQTVYLDYDIVKNM-SKEQCKALGAAF-PNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             TTCSEEEEEHHHHTTC-CHHHHHHHHTTS-TTCCEEEEECTTSCBCCG
T ss_pred             CCccEEEeccCCcccc-CHHHHHHHHHHh-ccCCceEEEecCCCcCCC
Confidence            8999999998862110 111122332211 13777888888 555553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=6.8e-16  Score=131.73  Aligned_cols=150  Identities=18%  Similarity=0.262  Sum_probs=110.8

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCccc-ChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCcc
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVI-PDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCR  173 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~  173 (397)
                      +.++++++.++.+|..+ ...++.|++++|.+..+ +...|..+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            57788888888777654 34567888888887666 34556788888888888888866644 67788888888888888


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      +...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+..
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            876666 577788888888888887755 56677788888888887 55555644447778888888887777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=8.2e-16  Score=134.97  Aligned_cols=156  Identities=21%  Similarity=0.211  Sum_probs=136.0

Q ss_pred             cCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcc
Q 047708           83 LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI  162 (397)
Q Consensus        83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  162 (397)
                      +..++....+++++.|++.+|.+..++....+++|+.|++++|.+..++.  +..+++|++|++++|.+..+|....  .
T Consensus        31 i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~  106 (263)
T 1xeu_A           31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--A  106 (263)
T ss_dssp             TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred             cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--C
Confidence            44445556789999999999999999865689999999999999888887  7999999999999999988876433  9


Q ss_pred             cCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708          163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR  242 (397)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  242 (397)
                      +|++|++++|.+.. ++.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++  .+..+++|+.|++++
T Consensus       107 ~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          107 CLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCEEEEEE
T ss_pred             cccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCEEeCCC
Confidence            99999999999865 467999999999999999999887 789999999999999 5666663  289999999999999


Q ss_pred             ccccc
Q 047708          243 SFHHW  247 (397)
Q Consensus       243 ~~~~~  247 (397)
                      |.+..
T Consensus       182 N~~~~  186 (263)
T 1xeu_A          182 QKCVN  186 (263)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            99875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=6.5e-17  Score=149.02  Aligned_cols=246  Identities=15%  Similarity=0.102  Sum_probs=169.9

Q ss_pred             EEccCCCccc-CCCcCC-CCCccEEEccCCCCcccCh----hhhcCCC-cccEEEcCCCCCCCC-ChhhcCc-----ccC
Q 047708           98 ISLMFNDIHE-VPDELE-CPKLQALLLQENSLLVIPD----RFFQGMK-DLKVLDMGGIRGFSL-PSSLSFL-----INL  164 (397)
Q Consensus        98 l~l~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~~~~l-----~~L  164 (397)
                      +.++.+.+.+ +|.... .++|+.|++++|.+...+.    ..+..++ +|++|++++|.+... +..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5677777776 454444 4559999999999888776    6678888 999999999998554 5556664     899


Q ss_pred             cEEEccCccCcCCCc-c----ccCC-CCCCEEEccCCCCCccch-h----hhC-CCCCCeeecCCCCCCCC-----Cchh
Q 047708          165 RTLSLHDCRRFGDLP-L----IGEL-SLLEILDLSKSDVSEIPI-S----FGR-LSHLRLLDLTDCDDLEL-----IPRG  227 (397)
Q Consensus       165 ~~L~l~~~~~~~~~~-~----~~~l-~~L~~L~l~~~~~~~lp~-~----i~~-l~~L~~L~l~~~~~~~~-----~~~~  227 (397)
                      ++|++++|.+....+ .    +..+ ++|++|++++|.++..+. .    +.. .++|++|++++| .++.     ++..
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~  161 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI  161 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH
Confidence            999999999876655 2    4455 899999999999885543 2    334 369999999994 4442     2332


Q ss_pred             hhcCCC-CCCEEEeecccccccccCCCccCccccccccCCC-CCCCEEEEeccCCCC-----CCCccc--CCCccEEEEE
Q 047708          228 VLSRLR-KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL-SRLTSLHIHIPNGKI-----MSSDMS--FQNLTSFSIT  298 (397)
Q Consensus       228 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~--~~~L~~L~l~  298 (397)
                       +..++ +|++|++++|.+....       ...+...+..+ ++|++|++++|.++.     ++..+.  .++|+.|+++
T Consensus       162 -l~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          162 -LAAIPANVNSLNLRGNNLASKN-------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC  233 (362)
T ss_dssp             -HHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred             -HhcCCccccEeeecCCCCchhh-------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence             45565 9999999999887521       11223345555 599999999999666     454454  3599999999


Q ss_pred             ecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHH-HHHHH------hhccceecccCC
Q 047708          299 IGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSW-IKNLL------LRSEILALVDVN  357 (397)
Q Consensus       299 ~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~-~~~~~------~~L~~L~l~~c~  357 (397)
                      .|........    .+.. .+..+++|+.|++ ++.+..++.. +..+.      ++|++|+++++.
T Consensus       234 ~N~l~~~~~~----~l~~-~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          234 LNCLHGPSLE----NLKL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             SSCCCCCCHH----HHHH-TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             CCCCCcHHHH----HHHH-HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            8876543221    2211 1123788999999 5554433322 22221      568888898744

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=1.4e-16  Score=146.06  Aligned_cols=236  Identities=13%  Similarity=0.087  Sum_probs=181.4

Q ss_pred             cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCcCCCc--cccCCCCCCE-EEcc
Q 047708          118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEI-LDLS  193 (397)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~-L~l~  193 (397)
                      ++++.+++.+..+|..+   .+++++|++++|.+..+|. .+.++++|++|++++|.+.+.++  .+..++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            57788888888998754   4689999999999998876 58999999999999999866554  6788988876 5556


Q ss_pred             CCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCC-CCCC
Q 047708          194 KSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL-SRLT  271 (397)
Q Consensus       194 ~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~  271 (397)
                      +|+++.++ ..+..+++|++|++++ +.++.++...+....++..+++.++.....++          ...+..+ ..++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~----------~~~f~~~~~~l~  157 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----------RNSFVGLSFESV  157 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC----------TTSSTTSBSSCE
T ss_pred             CCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhcccccccccc----------ccchhhcchhhh
Confidence            67888775 5778999999999999 66777776545566778888887755443221          1233344 4688


Q ss_pred             EEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhcc
Q 047708          272 SLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSE  349 (397)
Q Consensus       272 ~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~  349 (397)
                      .|++++|.+..++.... ..+|+.+.+..+.....        ++...|..+++|+.|++ ++.++.+|.+.   +.+|+
T Consensus       158 ~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~--------i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~  226 (350)
T 4ay9_X          158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--------LPNDVFHGASGPVILDISRTRIHSLPSYG---LENLK  226 (350)
T ss_dssp             EEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC--------CCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCC
T ss_pred             hhccccccccCCChhhccccchhHHhhccCCcccC--------CCHHHhccCcccchhhcCCCCcCccChhh---hccch
Confidence            99999999998888766 77889998876554433        22333445889999999 88899998654   26899


Q ss_pred             ceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708          350 ILALVDVNDLENIVSDLANDGFNELMFLGIFG  381 (397)
Q Consensus       350 ~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~  381 (397)
                      .|.+.++.+++.+|   ....|++|+.+++..
T Consensus       227 ~L~~l~~~~l~~lP---~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          227 KLRARSTYNLKKLP---TLEKLVALMEASLTY  255 (350)
T ss_dssp             EEECTTCTTCCCCC---CTTTCCSCCEEECSC
T ss_pred             HhhhccCCCcCcCC---CchhCcChhhCcCCC
Confidence            99998999999988   456899999999854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=6.9e-16  Score=142.06  Aligned_cols=149  Identities=21%  Similarity=0.222  Sum_probs=87.7

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhc-CCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCcc
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQ-GMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~  173 (397)
                      +.+++.++.+..+|..+ .+.++.|++++|.+..++...|. ++++|++|++++|.+..++ ..+..+++|++|++++|.
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            45666666666665543 23466666666666666655555 6666666666666665543 346666666666666666


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhh---cCCCCCCEEEeeccccc
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVL---SRLRKLEELYMSRSFHH  246 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~  246 (397)
                      +...++ .+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.+|...+   ..+++|+.|++++|.+.
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            655444 456666666666666666644 34556666666666666 45555555433   34556666666665554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=2.6e-15  Score=138.16  Aligned_cols=167  Identities=24%  Similarity=0.302  Sum_probs=141.4

Q ss_pred             ecCCccCCCCCccccccCceEEccCCCcccCCCcC---CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708           78 KAGVELKDWPSINKFEDLTGISLMFNDIHEVPDEL---ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL  154 (397)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  154 (397)
                      ..+..+..+|.. -.+.++.|++++|.+..++...   ++++|+.|++++|.+..++...|.++++|++|++++|.+..+
T Consensus        25 c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~  103 (361)
T 2xot_A           25 CSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL  103 (361)
T ss_dssp             CCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             eCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC
Confidence            344556666653 3467899999999999876543   789999999999999999888789999999999999999777


Q ss_pred             Ch-hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhh----hCCCCCCeeecCCCCCCCCCchhh
Q 047708          155 PS-SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISF----GRLSHLRLLDLTDCDDLELIPRGV  228 (397)
Q Consensus       155 ~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i----~~l~~L~~L~l~~~~~~~~~~~~~  228 (397)
                      +. .+..+.+|++|++++|.+....+ .+..+++|++|++++|.++.+|..+    ..+++|++|++++ +.++.+|...
T Consensus       104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~  182 (361)
T 2xot_A          104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTD  182 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHH
T ss_pred             CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHH
Confidence            55 68899999999999999987765 8999999999999999999998765    6799999999999 7788888777


Q ss_pred             hcCCCC--CCEEEeeccccc
Q 047708          229 LSRLRK--LEELYMSRSFHH  246 (397)
Q Consensus       229 ~~~l~~--L~~L~l~~~~~~  246 (397)
                      +..++.  ++.|++.+|.+.
T Consensus       183 ~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHSCHHHHTTEECCSSCEE
T ss_pred             hhhccHhhcceEEecCCCcc
Confidence            888887  488999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=4e-15  Score=126.96  Aligned_cols=145  Identities=18%  Similarity=0.263  Sum_probs=71.0

Q ss_pred             EEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCC
Q 047708          143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDD  220 (397)
Q Consensus       143 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~  220 (397)
                      .++++++.+..+|..+.  .+|+.|++++|.+...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NK   91 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-Cc
Confidence            34444444444443332  344555555554444333 444555555555555555433 34455555555555555 34


Q ss_pred             CCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEE
Q 047708          221 LELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSIT  298 (397)
Q Consensus       221 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~  298 (397)
                      ++.+|...+..+++|++|++++|.+.+           .....+..+++|+.|++++|.+..++.. +. +++|+.|+++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINC-----------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCE-----------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            444554444555555555555555543           1123444555555555555554444433 33 5556666555


Q ss_pred             ecC
Q 047708          299 IGD  301 (397)
Q Consensus       299 ~~~  301 (397)
                      .|+
T Consensus       161 ~N~  163 (220)
T 2v9t_B          161 QNP  163 (220)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=8.3e-15  Score=125.83  Aligned_cols=147  Identities=23%  Similarity=0.282  Sum_probs=89.3

Q ss_pred             ccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708          117 LQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK  194 (397)
Q Consensus       117 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~  194 (397)
                      -+.++++++.+..+|..+   .++|++|++++|.+..+ |..+..+++|++|++++|.+...++ .+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345666666666666532   36677777777776544 4556666777777777776655544 456666777777776


Q ss_pred             CCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEE
Q 047708          195 SDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSL  273 (397)
Q Consensus       195 ~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  273 (397)
                      |.++.+|.. +..+++|++|++++ +.++.+|.. +..+++|++|++++|.+.+.           ....+..+++|+.|
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI-----------PHGAFDRLSSLTHA  164 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC-----------CTTTTTTCTTCCEE
T ss_pred             CcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc-----------CHHHHhCCCCCCEE
Confidence            666655543 45666666666666 455566655 56666666666666665531           12334555666666


Q ss_pred             EEeccC
Q 047708          274 HIHIPN  279 (397)
Q Consensus       274 ~l~~~~  279 (397)
                      ++++|.
T Consensus       165 ~l~~N~  170 (229)
T 3e6j_A          165 YLFGNP  170 (229)
T ss_dssp             ECTTSC
T ss_pred             EeeCCC
Confidence            666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=7.6e-15  Score=125.23  Aligned_cols=146  Identities=14%  Similarity=0.174  Sum_probs=72.6

Q ss_pred             EEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCC
Q 047708          143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCD  219 (397)
Q Consensus       143 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~  219 (397)
                      .++++++.+..+|..+.  ..+++|++++|.+...++  .+..+++|++|++++|.++.++. .+..+++|++|++++ +
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-N   91 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-C
Confidence            44444444444444332  223455555555444322  24455555555555555554433 455555555555555 3


Q ss_pred             CCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEE
Q 047708          220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSI  297 (397)
Q Consensus       220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l  297 (397)
                      .++.++...++.+++|++|++++|.+.+           ..+..+..+++|++|++++|.+..+ |..+. +++|+.|++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITC-----------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCC-----------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCe-----------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence            4444444445555555555555555544           1223444555555555555554444 33444 566666666


Q ss_pred             EecCc
Q 047708          298 TIGDL  302 (397)
Q Consensus       298 ~~~~~  302 (397)
                      +.|+.
T Consensus       161 ~~N~l  165 (220)
T 2v70_A          161 LANPF  165 (220)
T ss_dssp             CSCCE
T ss_pred             cCcCC
Confidence            55543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=1.3e-14  Score=140.26  Aligned_cols=177  Identities=17%  Similarity=0.151  Sum_probs=142.9

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL  158 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  158 (397)
                      .++.+..+|.. -+++++.|++++|.+..+|  ..+++|+.|++++|.+..+|.  +.+  +|++|++++|.+..+|.  
T Consensus        67 s~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~--  137 (571)
T 3cvr_A           67 NRLNLSSLPDN-LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE--  137 (571)
T ss_dssp             CSSCCSCCCSC-CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC--
T ss_pred             CCCCCCccCHh-HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC--
Confidence            34556666653 2588999999999999988  457999999999999888887  344  99999999999988887  


Q ss_pred             cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCC---
Q 047708          159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL---  235 (397)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L---  235 (397)
                       .+++|++|++++|.+...++   .+++|++|++++|.++.+|. +.  ++|++|++++ +.++.+|.  +..  +|   
T Consensus       138 -~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~  205 (571)
T 3cvr_A          138 -LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHS  205 (571)
T ss_dssp             -CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC--------
T ss_pred             -cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcc
Confidence             78999999999999877544   67899999999999999998 65  8999999999 57778887  433  66   


Q ss_pred             ----CEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCC-CCCCCccc
Q 047708          236 ----EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNG-KIMSSDMS  288 (397)
Q Consensus       236 ----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~  288 (397)
                          +.|++++|.+..            ++..+..+++|+.|++++|.+ +..|..+.
T Consensus       206 ~~~L~~L~Ls~N~l~~------------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          206 EETEIFFRCRENRITH------------IPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             --CCEEEECCSSCCCC------------CCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             cccceEEecCCCccee------------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence                999999999873            456677799999999999985 33444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=8.7e-18  Score=163.11  Aligned_cols=79  Identities=27%  Similarity=0.381  Sum_probs=37.3

Q ss_pred             CcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecc
Q 047708          164 LRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRS  243 (397)
Q Consensus       164 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  243 (397)
                      |++|++++|.+...+ .++.+++|+.|++++|.++.+|..++.+++|++|++++ +.++.+| . ++.+++|++|++++|
T Consensus       443 L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          443 VRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCNN  518 (567)
T ss_dssp             CSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCSS
T ss_pred             ceEEEecCCCCCCCc-CccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCCC
Confidence            444455554443322 24444555555555554444444455555555555544 3333344 2 444555555555544


Q ss_pred             ccc
Q 047708          244 FHH  246 (397)
Q Consensus       244 ~~~  246 (397)
                      .+.
T Consensus       519 ~l~  521 (567)
T 1dce_A          519 RLQ  521 (567)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=6.7e-16  Score=151.80  Aligned_cols=38  Identities=11%  Similarity=-0.009  Sum_probs=21.1

Q ss_pred             hhccceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708          346 LRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE  384 (397)
Q Consensus       346 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~  384 (397)
                      ++|++|+|++|.- ...........+++|++|++++|+.
T Consensus       481 ~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          481 DSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             TTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5666666666553 3222121234567777777777753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=9e-15  Score=119.28  Aligned_cols=140  Identities=18%  Similarity=0.146  Sum_probs=102.2

Q ss_pred             CCCcccEEEcCCCCCC--CCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCc-cchhhhCCCCCCee
Q 047708          137 GMKDLKVLDMGGIRGF--SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE-IPISFGRLSHLRLL  213 (397)
Q Consensus       137 ~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L  213 (397)
                      ..++|++|++++|.+.  .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3467888888888776  7777777888888888888877655 777788888888888888876 67777778888888


Q ss_pred             ecCCCCCCCCCch-hhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc
Q 047708          214 DLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD  286 (397)
Q Consensus       214 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  286 (397)
                      ++++ +.++.++. ..++.+++|++|++++|.+.+..+        .....+..+++|++|++++|....+|..
T Consensus       101 ~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          101 NLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             ECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             eccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence            8888 46666652 337788888888888887764110        0012567788888888888887666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=5.7e-16  Score=152.33  Aligned_cols=266  Identities=16%  Similarity=0.088  Sum_probs=139.9

Q ss_pred             CCCCccEEEccCCCCcccC-hhhhcCCCcccEEEcCCC-CCCC--CChhhcCcccCcEEEccCccCcCCCc-----cccC
Q 047708          113 ECPKLQALLLQENSLLVIP-DRFFQGMKDLKVLDMGGI-RGFS--LPSSLSFLINLRTLSLHDCRRFGDLP-----LIGE  183 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~  183 (397)
                      .+++|+.|++++|.+.+.. ..+...+++|++|++++| .+..  ++..+..+++|++|++++|.+....+     ....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            4556666666666633322 222224666666666666 2222  33333456666666666666433221     1224


Q ss_pred             CCCCCEEEccCCC--CC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc-------c-----
Q 047708          184 LSLLEILDLSKSD--VS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH-------W-----  247 (397)
Q Consensus       184 l~~L~~L~l~~~~--~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------~-----  247 (397)
                      +++|++|++++|.  +.  .++..+.++++|++|++++|..++.++.. +..+++|++|++..+...       +     
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            5566666666664  22  22233344566666666665444444433 556666666665433210       0     


Q ss_pred             -------cccCCCccCccccccccCCCCCCCEEEEeccCCCC--CCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708          248 -------QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKI--MSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK  317 (397)
Q Consensus       248 -------~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~  317 (397)
                             .+..........+...+..+++|++|++++|.+..  +...+. +++|++|++..| ...    ..+..+.. 
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~----~~l~~l~~-  335 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED----AGLEVLAS-  335 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH----HHHHHHHH-
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH----HHHHHHHH-
Confidence                   00000001111233333467889999998887432  222244 788999999876 211    12233322 


Q ss_pred             cccccccccceec-c---------cccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEe-----c
Q 047708          318 FKKRCSRAMGLSQ-D---------MRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIF-----G  381 (397)
Q Consensus       318 ~~~~~~~L~~L~l-~---------~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~-----~  381 (397)
                         .+++|+.|++ .         +.++.. ...+....++|++|.+. |+.+...........+|+|+.|++.     +
T Consensus       336 ---~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~  411 (594)
T 2p1m_B          336 ---TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKA  411 (594)
T ss_dssp             ---HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred             ---hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence               3678888877 2         122211 11122212688999654 6777665323233468999999999     6


Q ss_pred             cCCceEee
Q 047708          382 CNEMKCLL  389 (397)
Q Consensus       382 c~~L~~i~  389 (397)
                      |..++..|
T Consensus       412 ~~~l~~~~  419 (594)
T 2p1m_B          412 PDYLTLEP  419 (594)
T ss_dssp             CCTTTCCC
T ss_pred             cccccCCc
Confidence            77777544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=2e-14  Score=117.13  Aligned_cols=129  Identities=25%  Similarity=0.289  Sum_probs=70.5

Q ss_pred             CCccEEEccCCCCc--ccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEE
Q 047708          115 PKLQALLLQENSLL--VIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD  191 (397)
Q Consensus       115 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~  191 (397)
                      ++|+.|++++|.+.  .++.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+...++ .+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555533  44432 35555556666655555444 445555666666666665554333 334466666666


Q ss_pred             ccCCCCCccc--hhhhCCCCCCeeecCCCCCCCCCch---hhhcCCCCCCEEEeeccccc
Q 047708          192 LSKSDVSEIP--ISFGRLSHLRLLDLTDCDDLELIPR---GVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       192 l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~  246 (397)
                      +++|.++.+|  ..+..+++|++|++++ +.++.+|.   ..+..+++|++|++.+|...
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666665544  4555666666666666 34444443   23566666666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=4.1e-14  Score=112.90  Aligned_cols=123  Identities=22%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             cccCceEEccCCCcc--cCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC-CChhhcCcccCcEE
Q 047708           92 FEDLTGISLMFNDIH--EVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTL  167 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L  167 (397)
                      .++++.|++++|.+.  .+|..+ .+++|+.|++++|.+..+  ..+..+++|++|++++|.+.. +|..++.+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            355667777776666  455543 556666666666665444  224556666666666666544 44444455556666


Q ss_pred             EccCccCcCCC--ccccCCCCCCEEEccCCCCCccch----hhhCCCCCCeeecC
Q 047708          168 SLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIPI----SFGRLSHLRLLDLT  216 (397)
Q Consensus       168 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~----~i~~l~~L~~L~l~  216 (397)
                      ++++|.+...+  ..+..+++|++|++++|.++.+|.    .+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66555554432  345555555555555555554443    44555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=3.7e-14  Score=113.16  Aligned_cols=129  Identities=20%  Similarity=0.147  Sum_probs=76.9

Q ss_pred             CCcccEEEcCCCCCC--CCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCc-cchhhhCCCCCCeee
Q 047708          138 MKDLKVLDMGGIRGF--SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE-IPISFGRLSHLRLLD  214 (397)
Q Consensus       138 l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~  214 (397)
                      .++|+.|++++|.+.  .+|..+..+++|++|++++|.+... +.++.+++|++|++++|.++. +|..++.+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            455666666666665  5666666666677777766666444 566666677777777766664 666666667777777


Q ss_pred             cCCCCCCCCCch-hhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEe
Q 047708          215 LTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH  276 (397)
Q Consensus       215 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  276 (397)
                      +++ +.++.++. ..++.+++|++|++++|.+.+..+        .....+..+++|+.|+++
T Consensus        95 ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT--------HHHHHHHHCTTCCEETTB
T ss_pred             CCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchHH--------HHHHHHHHCCCcccccCC
Confidence            766 34554431 226666777777777666654110        000245556666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.9e-13  Score=113.98  Aligned_cols=124  Identities=25%  Similarity=0.326  Sum_probs=68.6

Q ss_pred             EEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCC
Q 047708          119 ALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDV  197 (397)
Q Consensus       119 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~  197 (397)
                      .++++++.+..+|..+   .++|++|++++|.+..+|..+..+++|++|++++|.+....+ .+..+++|++|++++|.+
T Consensus        14 ~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            3444444444444322   234555566655555555555556666666666665555444 455666666666666666


Q ss_pred             Cccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          198 SEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       198 ~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      +.++. .+..+++|++|++++ +.++.+|...+..+++|+.|++.+|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            54443 455566666666666 4455555544556666666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=1.8e-14  Score=118.43  Aligned_cols=129  Identities=16%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccc-cCCCCCCEEE
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLI-GELSLLEILD  191 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~  191 (397)
                      ++++|+.|++++|.+..++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+...++.+ ..+++|++|+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            34444444444444443322 112222455555555544433 33444445555555555444333322 4445555555


Q ss_pred             ccCCCCCccch--hhhCCCCCCeeecCCCCCCCCCchh---hhcCCCCCCEEEeeccc
Q 047708          192 LSKSDVSEIPI--SFGRLSHLRLLDLTDCDDLELIPRG---VLSRLRKLEELYMSRSF  244 (397)
Q Consensus       192 l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~  244 (397)
                      +++|.+..+|.  .+..+++|++|++++ +.+..+|..   .++.+++|+.|++++|.
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            55554444443  444455555555544 233333332   24444555555544443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=5.6e-14  Score=140.57  Aligned_cols=156  Identities=22%  Similarity=0.231  Sum_probs=95.9

Q ss_pred             cccCceEEccCCCcccCCCcC-CCCCccEEEc-----cCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCc
Q 047708           92 FEDLTGISLMFNDIHEVPDEL-ECPKLQALLL-----QENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLR  165 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~  165 (397)
                      -++++.+.+..+.+...+... ....|+.+.+     ..|.+. ++...|..++.|++|+|++|.+..+|..+..+++|+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT  250 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence            355777888777776654433 3333333332     333333 445557888889999999988888888888889999


Q ss_pred             EEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708          166 TLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       166 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  245 (397)
                      +|++++|.+...++.++.+++|++|++++|.++.+|..++.+++|++|++++ +.++.+|.. ++.+++|++|++++|.+
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCcc
Confidence            9999998887555578889999999999998888888888899999999988 567788877 88889999999999888


Q ss_pred             ccccc
Q 047708          246 HWQFE  250 (397)
Q Consensus       246 ~~~~~  250 (397)
                      .+.+|
T Consensus       329 ~~~~p  333 (727)
T 4b8c_D          329 EKQFL  333 (727)
T ss_dssp             CSHHH
T ss_pred             CCCCh
Confidence            87554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=2e-13  Score=113.77  Aligned_cols=121  Identities=22%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChh-hhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDR-FFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~  173 (397)
                      +.++++++.+..+|..+. ..++.|++++|.+..++.. .|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            455566665555554331 2555555555555444432 345555555555555555333 4445555555555555555


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCC
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTD  217 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  217 (397)
                      +...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            544443 345555555555555555532 34444455555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=1.3e-14  Score=145.05  Aligned_cols=139  Identities=21%  Similarity=0.207  Sum_probs=112.2

Q ss_pred             CCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCC
Q 047708          109 PDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLL  187 (397)
Q Consensus       109 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L  187 (397)
                      +..+ .++.|+.|++++|.+..++..++ .+++|++|+|++|.+..+|..++.+++|++|++++|.+...+..++.+++|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            3334 78999999999999889988865 899999999999999999999999999999999999998666689999999


Q ss_pred             CEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCC-CCCEEEeecccccccc
Q 047708          188 EILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR-KLEELYMSRSFHHWQF  249 (397)
Q Consensus       188 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~  249 (397)
                      ++|++++|.++.+|..++.+++|++|++++|...+.+|.. +..+. .+..+++.+|.+.+.+
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~  357 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPL  357 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCC
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcC
Confidence            9999999999999999999999999999995444444433 44332 1223567777776643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=2.9e-13  Score=112.75  Aligned_cols=124  Identities=21%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh--hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708          118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS--LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK  194 (397)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~  194 (397)
                      +.++++++.+..+|..++   .+|++|++++|.+..++..  ++.+++|++|++++|.+....+ .+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            344455544444443221   1444555555544444332  4444444444444444444433 444444444444444


Q ss_pred             CCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708          195 SDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       195 ~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  245 (397)
                      |.++.++. .+..+++|++|++++ +.++.+++..++.+++|++|++++|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            44443332 234444444444444 222222222234444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=8.3e-14  Score=114.41  Aligned_cols=129  Identities=16%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             ccccccCceEEccCCCcccCCCcCCCC-CccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh-cCcccCcE
Q 047708           89 INKFEDLTGISLMFNDIHEVPDELECP-KLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL-SFLINLRT  166 (397)
Q Consensus        89 ~~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~  166 (397)
                      ...+.+++.|++++|.+..++....+. +|+.|++++|.+..++  .+..+++|++|++++|.+..+|..+ ..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            346778999999999999987766554 9999999999987773  3789999999999999998887655 88999999


Q ss_pred             EEccCccCcCCCc--cccCCCCCCEEEccCCCCCccchh----hhCCCCCCeeecCCCC
Q 047708          167 LSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS----FGRLSHLRLLDLTDCD  219 (397)
Q Consensus       167 L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~~----i~~l~~L~~L~l~~~~  219 (397)
                      |++++|.+...++  .+..+++|++|++++|.+..+|..    ++.+++|++|++++|.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999966555  788999999999999999988875    8999999999999843

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.43  E-value=2e-12  Score=106.23  Aligned_cols=121  Identities=25%  Similarity=0.338  Sum_probs=67.7

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR  174 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~  174 (397)
                      +.+++.++++..+|... .+.|+.|++++|.+..++...|..+++|++|++++|.+..++.. +..+++|++|++++|.+
T Consensus        10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            45666666666555332 24566666666665555555556666666666666666554432 35556666666666655


Q ss_pred             cCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCC
Q 047708          175 FGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTD  217 (397)
Q Consensus       175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~  217 (397)
                      ...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            54444 345555555555555555555443 24455555555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=2.7e-12  Score=106.92  Aligned_cols=123  Identities=25%  Similarity=0.304  Sum_probs=106.7

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCccC
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~  174 (397)
                      +.++++++.+..+|..+ .+.|+.|++++|.+..+|. .|..+++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            57888888888888755 3689999999999888884 4799999999999999997775 4688999999999999999


Q ss_pred             cCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCC
Q 047708          175 FGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDD  220 (397)
Q Consensus       175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~  220 (397)
                      ...++ .+..+++|++|++++|.++.+|. .+..+++|++|++++|..
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            88777 78999999999999999998886 578899999999999543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.42  E-value=2.2e-12  Score=105.90  Aligned_cols=127  Identities=22%  Similarity=0.357  Sum_probs=96.0

Q ss_pred             ccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708          117 LQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK  194 (397)
Q Consensus       117 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~  194 (397)
                      .+.++++++.+..+|..+   .++|++|+++++.+..++. .+..+++|++|++++|.+...++ .+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            456777777777777533   4678888888888866655 45778888888888888876665 467888888888888


Q ss_pred             CCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          195 SDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       195 ~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      |.++.+|.. +..+++|++|++++ +.++.+|...+..+++|++|++++|.+.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            888877654 57788888888888 56667777656778888888888887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.37  E-value=2.5e-12  Score=124.83  Aligned_cols=172  Identities=21%  Similarity=0.186  Sum_probs=132.4

Q ss_pred             ccccCceEEccCCCcccCCCcC-CCCCccEEEccCCC-------------CcccChhhhc--------------------
Q 047708           91 KFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENS-------------LLVIPDRFFQ--------------------  136 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~--------------------  136 (397)
                      ..++++.|++++|.+..+|..+ ++++|+.|++++|.             ....++..++                    
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            4567788888888888777766 77778877765542             1111110000                    


Q ss_pred             ------------CCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhh
Q 047708          137 ------------GMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISF  204 (397)
Q Consensus       137 ------------~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i  204 (397)
                                  ....|++|++++|.+..+|. ++.+++|++|++++|.+...++.++.+++|++|++++|.++.+| .+
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l  504 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV  504 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred             hhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence                        01258899999999988987 99999999999999999866669999999999999999999998 89


Q ss_pred             hCCCCCCeeecCCCCCCCCC--chhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEE
Q 047708          205 GRLSHLRLLDLTDCDDLELI--PRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLH  274 (397)
Q Consensus       205 ~~l~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  274 (397)
                      +.+++|++|++++ +.++.+  |.. ++.+++|+.|++++|.+.+..+        .....+..+++|+.|+
T Consensus       505 ~~l~~L~~L~Ls~-N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~--------~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          505 ANLPRLQELLLCN-NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG--------IQERLAEMLPSVSSIL  566 (567)
T ss_dssp             TTCSSCCEEECCS-SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS--------CTTHHHHHCTTCSEEE
T ss_pred             CCCCCCcEEECCC-CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc--------HHHHHHHHCcccCccC
Confidence            9999999999999 566766  555 9999999999999999886332        1122233467788775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=3.2e-12  Score=115.97  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             CCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccC
Q 047708          114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHD  171 (397)
Q Consensus       114 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~  171 (397)
                      |++|+.+.+.. .+..++...|.+|++|+.+++..+.+..++ ..+..+.++.++....
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            67777777766 666666666777777777777776654442 2344444454444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=5.2e-14  Score=118.03  Aligned_cols=117  Identities=23%  Similarity=0.179  Sum_probs=82.6

Q ss_pred             CcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhC
Q 047708          127 LLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGR  206 (397)
Q Consensus       127 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~  206 (397)
                      +..++. .+..+++|++|++++|.+..+| .+..+++|++|++++|.+...+..+..+++|++|++++|.++.+| .+..
T Consensus        37 l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           37 IEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             CCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             HhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            444444 3577778888888877776676 677777888888888777654445566677788888777777776 5777


Q ss_pred             CCCCCeeecCCCCCCCCCch-hhhcCCCCCCEEEeecccccc
Q 047708          207 LSHLRLLDLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       207 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      +++|++|++++ +.++.++. ..+..+++|++|++++|.+.+
T Consensus       114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            77788888777 45555543 336777778888887777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4.4e-11  Score=97.71  Aligned_cols=97  Identities=23%  Similarity=0.292  Sum_probs=43.0

Q ss_pred             cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCC
Q 047708          118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKS  195 (397)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~  195 (397)
                      +.++++++.+..+|..+   .++|++|++++|.+..+ |..+.++++|++|++++|.+...++ .+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34444444444444322   14444555555444333 3334444444444444444444333 2344444444444444


Q ss_pred             CCCccchh-hhCCCCCCeeecCC
Q 047708          196 DVSEIPIS-FGRLSHLRLLDLTD  217 (397)
Q Consensus       196 ~~~~lp~~-i~~l~~L~~L~l~~  217 (397)
                      .++.+|.. +..+++|++|++++
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCS
T ss_pred             ccceeCHHHhccccCCCEEEeCC
Confidence            44444432 44444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.25  E-value=4.6e-11  Score=97.26  Aligned_cols=102  Identities=26%  Similarity=0.449  Sum_probs=52.3

Q ss_pred             cEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCC
Q 047708          142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCD  219 (397)
Q Consensus       142 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~  219 (397)
                      ++++++++.+..+|..+  ..+|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-N   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-C
Confidence            44555555555555433  2455555555555544433 455555555555555555544442 34555555555555 3


Q ss_pred             CCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          220 DLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      .++.++...++.+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            444454444555555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4.5e-11  Score=97.68  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=95.3

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR  174 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~  174 (397)
                      +.++++++.+..+|..+. +.|+.|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            688999999998887664 8999999999999988877789999999999999999888775 57899999999999999


Q ss_pred             cCCCc-cccCCCCCCEEEccCCCCCccchhh
Q 047708          175 FGDLP-LIGELSLLEILDLSKSDVSEIPISF  204 (397)
Q Consensus       175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i  204 (397)
                      ...++ .+..+++|++|++++|.+...+..+
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             ceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence            88777 5899999999999999988666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.23  E-value=1.6e-13  Score=115.09  Aligned_cols=142  Identities=18%  Similarity=0.156  Sum_probs=106.1

Q ss_pred             ccEEEcCCC--CCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCC
Q 047708          141 LKVLDMGGI--RGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDC  218 (397)
Q Consensus       141 L~~L~l~~~--~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~  218 (397)
                      ++...+.+.  .+..+|..+..+++|++|++++|.+... +.+..+++|++|++++|.++.+|..+..+++|++|++++ 
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-
Confidence            344444443  3455666889999999999999988664 488889999999999998888888888888999999998 


Q ss_pred             CCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CC----------cc
Q 047708          219 DDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SS----------DM  287 (397)
Q Consensus       219 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~----------~~  287 (397)
                      +.++.+|.  ++.+++|++|++++|.+...          ..+..+..+++|++|++++|.+... |.          .+
T Consensus       103 N~l~~l~~--~~~l~~L~~L~l~~N~i~~~----------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A          103 NQIASLSG--IEKLVNLRVLYMSNNKITNW----------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             EECCCHHH--HHHHHHSSEEEESEEECCCH----------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCcCCc--cccCCCCCEEECCCCcCCch----------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            56666763  78888999999999887641          1124677888899999988874332 22          14


Q ss_pred             c-CCCccEEE
Q 047708          288 S-FQNLTSFS  296 (397)
Q Consensus       288 ~-~~~L~~L~  296 (397)
                      . +++|+.|+
T Consensus       171 ~~l~~L~~Ld  180 (198)
T 1ds9_A          171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCSEEC
T ss_pred             HhCCCcEEEC
Confidence            4 77777775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=1.2e-10  Score=94.72  Aligned_cols=102  Identities=22%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR  174 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~  174 (397)
                      +.++++++.+..+|..+ .+.|+.|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            45666666666655443 25556666666665555544455566666666666655554443 34555555555555555


Q ss_pred             cCCCc-cccCCCCCCEEEccCCCCC
Q 047708          175 FGDLP-LIGELSLLEILDLSKSDVS  198 (397)
Q Consensus       175 ~~~~~-~~~~l~~L~~L~l~~~~~~  198 (397)
                      ...++ .+..+++|++|++++|.+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            54444 3555555555555555444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.20  E-value=3.1e-11  Score=109.47  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             cccCceEEccCCCccc--CCCcCCCCCccEEEccCCCCcccChhhhcC--------CCcccEEEcCCCCCCCCCh-hhcC
Q 047708           92 FEDLTGISLMFNDIHE--VPDELECPKLQALLLQENSLLVIPDRFFQG--------MKDLKVLDMGGIRGFSLPS-SLSF  160 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~l~~-~~~~  160 (397)
                      +++|+.|++++|.+..  .... .++.++.+.+..+   .++...|.+        +.+|+.|++.. .+..++. .+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~  122 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG  122 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred             hccCeEEecCcceeEEecCccc-ccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence            4455666666665551  1111 1111233333332   566667788        99999999988 7766644 6788


Q ss_pred             cccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708          161 LINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK  194 (397)
Q Consensus       161 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~  194 (397)
                      +++|+.+++.++.+....+ .+..+.++..+....
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            8999999999887755554 566666666665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.08  E-value=1.7e-09  Score=100.42  Aligned_cols=58  Identities=19%  Similarity=0.158  Sum_probs=22.5

Q ss_pred             ccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708          181 IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM  240 (397)
Q Consensus       181 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  240 (397)
                      +..+.+|+.+++..+.++.+|.......+|+.+.+..  .+..++...|..+++|+.+.+
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence            3344444444444444443333222233444444432  133333333444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.05  E-value=3.6e-09  Score=98.19  Aligned_cols=255  Identities=12%  Similarity=0.147  Sum_probs=177.3

Q ss_pred             ccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEcc
Q 047708           93 EDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLH  170 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~  170 (397)
                      ..++.+.+. +.++.++... .-.+|+.+.+..+ +..++...|.++ +|+.+.+.. .+..+ +..+.++.+|+.+++.
T Consensus       113 ~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          113 KGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             SSCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred             CCccEEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence            455666654 3445444433 2247999998766 777777778885 699999986 55555 3578889999999999


Q ss_pred             CccCcCCCc-cccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccc
Q 047708          171 DCRRFGDLP-LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQ  248 (397)
Q Consensus       171 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  248 (397)
                      .+.+..... .+. ..+|+.+.+..+ ++.++ ..+..+.+|+.+.+..  .++.++...|.. .+|+.+.+..+ +.. 
T Consensus       189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~-  261 (401)
T 4fdw_A          189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN-  261 (401)
T ss_dssp             TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE-
T ss_pred             CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE-
Confidence            988876666 444 689999999754 77665 4788899999999986  367788777777 78999999543 221 


Q ss_pred             ccCCCccCccccccccCCCCCCCEEEEeccCCC-----CCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708          249 FEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGK-----IMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR  321 (397)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~  321 (397)
                                .....+..|++|+.+.+.++...     .++.. +. |++|+.+.+...          +..++...|..
T Consensus       262 ----------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~----------i~~I~~~aF~~  321 (401)
T 4fdw_A          262 ----------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES----------IRILGQGLLGG  321 (401)
T ss_dssp             ----------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT----------CCEECTTTTTT
T ss_pred             ----------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc----------eEEEhhhhhcC
Confidence                      12456788999999999887654     34433 55 899999987621          22344445566


Q ss_pred             cccccceecccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCC-CccEEEEec
Q 047708          322 CSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFN-ELMFLGIFG  381 (397)
Q Consensus       322 ~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~-~L~~L~i~~  381 (397)
                      |.+|+.+.+...+..++...+... +|+.+.+.+ +.+..+... ...+++ .++.|++-.
T Consensus       322 c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~-~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          322 NRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEK-VWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CCSCCEEEECTTCCEECTTSSSSS-CCCEEEECC-SSCCBCCCS-SCCCSCTTCCEEEECG
T ss_pred             CCCccEEEECccccEEcHHhCCCC-CCCEEEEcC-CCCcccccc-cccCCCCCccEEEeCH
Confidence            899999999666777776555443 888998887 444444322 123453 567777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.96  E-value=8.9e-11  Score=107.90  Aligned_cols=159  Identities=16%  Similarity=0.084  Sum_probs=83.1

Q ss_pred             CCccEEEccCCCCcccChhhhc-----CCCcccEEEcCCCCCCCC--ChhhcCcccCcEEEccCccCcCCCc-cc-----
Q 047708          115 PKLQALLLQENSLLVIPDRFFQ-----GMKDLKVLDMGGIRGFSL--PSSLSFLINLRTLSLHDCRRFGDLP-LI-----  181 (397)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~-~~-----  181 (397)
                      +.|+.|++++|.+.......+.     ..++|++|++++|.+...  ..-...+.+|++|++++|.+..... .+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3455555555554332221111     235666666666665321  1112234566666776666533211 11     


Q ss_pred             cCCCCCCEEEccCCCCCc-----cchhhhCCCCCCeeecCCCCCCCCCc----hhhhcCCCCCCEEEeecccccccccCC
Q 047708          182 GELSLLEILDLSKSDVSE-----IPISFGRLSHLRLLDLTDCDDLELIP----RGVLSRLRKLEELYMSRSFHHWQFEGE  252 (397)
Q Consensus       182 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~  252 (397)
                      ...++|++|++++|.++.     ++..+...++|++|++++| .++...    ...+...++|++|++++|.+...-   
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g---  227 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA---  227 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH---
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH---
Confidence            235667777777776652     4445566677777777773 343221    112455667777777777665310   


Q ss_pred             CccCccccccccCCCCCCCEEEEeccCCC
Q 047708          253 EDSSSNAKFIELGSLSRLTSLHIHIPNGK  281 (397)
Q Consensus       253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  281 (397)
                          ...+...+...++|++|++++|.++
T Consensus       228 ----~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          228 ----ALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             ----HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             ----HHHHHHHHHhCCCCCEEeccCCCCC
Confidence                1123334445667777777777643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.89  E-value=6.1e-09  Score=94.97  Aligned_cols=99  Identities=19%  Similarity=0.094  Sum_probs=74.5

Q ss_pred             EEEccCC-CCcccChhhhcCCCcccEEEcCC-CCCCCCC-hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708          119 ALLLQEN-SLLVIPDRFFQGMKDLKVLDMGG-IRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK  194 (397)
Q Consensus       119 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~  194 (397)
                      .++++++ .+..+|.  +..+.+|++|+|++ |.+..++ ..++++.+|++|++++|.+.+.++ .+..+++|++|++++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577776 6777777  57888888888885 7876665 467788888888888888877766 678888888888888


Q ss_pred             CCCCccchhhhCCCCCCeeecCCCC
Q 047708          195 SDVSEIPISFGRLSHLRLLDLTDCD  219 (397)
Q Consensus       195 ~~~~~lp~~i~~l~~L~~L~l~~~~  219 (397)
                      |.++.+|..+.....|+.|++.+|.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CccceeCHHHcccCCceEEEeeCCC
Confidence            8888777655444448888888743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.84  E-value=1.4e-08  Score=92.46  Aligned_cols=102  Identities=18%  Similarity=0.137  Sum_probs=83.0

Q ss_pred             ceEEccCC-CcccCCCcCCCCCccEEEccC-CCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCc
Q 047708           96 TGISLMFN-DIHEVPDELECPKLQALLLQE-NSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDC  172 (397)
Q Consensus        96 ~~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~  172 (397)
                      ..++.+++ .+..+|....+++|+.|++++ |.+..++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            34677777 788888822788899999986 8888888877899999999999999986664 46788999999999999


Q ss_pred             cCcCCCcc-ccCCCCCCEEEccCCCCC
Q 047708          173 RRFGDLPL-IGELSLLEILDLSKSDVS  198 (397)
Q Consensus       173 ~~~~~~~~-~~~l~~L~~L~l~~~~~~  198 (397)
                      .+...++. +..+. |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            98877764 44444 999999999877

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=8.3e-10  Score=101.43  Aligned_cols=155  Identities=13%  Similarity=-0.013  Sum_probs=113.5

Q ss_pred             cccCceEEccCCCccc-----CCCcC--CCCCccEEEccCCCCccc-ChhhhcCCCcccEEEcCCCCCCCC-----Chhh
Q 047708           92 FEDLTGISLMFNDIHE-----VPDEL--ECPKLQALLLQENSLLVI-PDRFFQGMKDLKVLDMGGIRGFSL-----PSSL  158 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~-----~~~~~--~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l-----~~~~  158 (397)
                      .++++.|++++|.+..     +....  ..+.|+.|++++|.+.+. ...++..+++|++|++++|.+...     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4678999999998875     22222  347999999999986543 233345567899999999988432     1222


Q ss_pred             -cCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCC-----ccchhhhCCCCCCeeecCCCCCCCCCch-
Q 047708          159 -SFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVS-----EIPISFGRLSHLRLLDLTDCDDLELIPR-  226 (397)
Q Consensus       159 -~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~-  226 (397)
                       ...++|++|++++|.+....     ..+...++|++|++++|.+.     .++..+...++|++|++++| .++.... 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence             24678999999999875421     24578899999999999987     34567788899999999994 5554322 


Q ss_pred             ---hhhcCCCCCCEEEeecccccc
Q 047708          227 ---GVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       227 ---~~~~~l~~L~~L~l~~~~~~~  247 (397)
                         ..+...++|++|++++|.+..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCH
Confidence               124567899999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=6.1e-08  Score=88.34  Aligned_cols=57  Identities=16%  Similarity=0.103  Sum_probs=26.5

Q ss_pred             hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCC-ccchhhh--CCCCCCeeecC
Q 047708          158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVS-EIPISFG--RLSHLRLLDLT  216 (397)
Q Consensus       158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~--~l~~L~~L~l~  216 (397)
                      +..+++|+.|+++++.....+ .+ .+++|++|++..|.+. .....+.  .+++|++|+++
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIG-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCceec-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            344556666666554211211 22 2556666666555544 1112222  45566665553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.60  E-value=3.6e-07  Score=84.76  Aligned_cols=63  Identities=10%  Similarity=-0.002  Sum_probs=36.8

Q ss_pred             hhcccccccccceecccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708          316 RKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFG  381 (397)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~  381 (397)
                      ...|..|.+|+.+.+...++.++..-+....+|+.+.|..  +++.+. .....++++|+.+++..
T Consensus       313 ~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~-~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPL--SLRKIG-ANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCT--TCCEEC-TTTBTTCTTCCEEEEEG
T ss_pred             hhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECc--cccEeh-HHHhhCCCCCCEEEECC
Confidence            3344557778888775556666544332224777777753  355543 22334677788887754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.44  E-value=1.4e-07  Score=86.03  Aligned_cols=80  Identities=20%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             CCCCccEEEccCCCCc---------ccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCC-ccc-
Q 047708          113 ECPKLQALLLQENSLL---------VIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDL-PLI-  181 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~-  181 (397)
                      ++++|+.|.+......         .-...++..+|+|+.|.++++....++. + .+++|+.|++..|.+.... ..+ 
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            4677888877544211         0122456788999999998874333443 3 3788999999887753322 133 


Q ss_pred             -cCCCCCCEEEccC
Q 047708          182 -GELSLLEILDLSK  194 (397)
Q Consensus       182 -~~l~~L~~L~l~~  194 (397)
                       ..+++|++|+++.
T Consensus       215 ~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          215 GSDLPNLEKLVLYV  228 (362)
T ss_dssp             HSBCTTCCEEEEEC
T ss_pred             HccCCCCcEEEEec
Confidence             3789999998853

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.41  E-value=8.4e-08  Score=92.90  Aligned_cols=70  Identities=10%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             CCCccccHHHHHHHHHhh--ccccccccHHHHHHHHHHHHHHHhhcceeeecC--CcCeEEechHHHHHHHHHhcccce
Q 047708            1 QEDYNIPIEVLARYGWGL--RCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG--KEGYVKMHDVVRYVAQQIASKNKF   75 (397)
Q Consensus         1 P~~~~~~~~~Li~~Wia~--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~~hd~~~~~~~~~~~~~~~   75 (397)
                      |+||.|+    |++|+|+  ||+...+.....++.++ ||++|+++||++...  ...+|+|||++|++++.++.+++.
T Consensus       400 p~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          400 PPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             CTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             CCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            8899998    8999999  99975431122455566 999999999999873  345799999999999998875443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.32  E-value=6.6e-06  Score=76.17  Aligned_cols=270  Identities=13%  Similarity=0.073  Sum_probs=139.3

Q ss_pred             cCceEEccCCCcccCCCcC--CCCCccEEEccCCC---CcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEE
Q 047708           94 DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENS---LLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTL  167 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L  167 (397)
                      .|+.+.+.. .++.+....  +|++|+.+.+..+.   +..+....|..+.+|+.+.+..+ +..+ ...+..+.+|+.+
T Consensus        65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            367777753 355554433  77888888886653   66677777777877777766543 3333 2345667778877


Q ss_pred             EccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          168 SLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       168 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      .+......-....+..+..|+.+.+..+ ++.+....-...+|+.+.+..  ....+....+..+..+............
T Consensus       143 ~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c~~l~~~~~~~~~~~~  219 (394)
T 4gt6_A          143 TIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA--KVTRIGTNAFSECFALSTITSDSESYPA  219 (394)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT--TCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred             cccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECC--cccccccchhhhccccceeccccccccc
Confidence            7765322111125667777777777543 444443322335566666543  1223333335555555555443221110


Q ss_pred             cccC-----------------C--------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecC
Q 047708          248 QFEG-----------------E--------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGD  301 (397)
Q Consensus       248 ~~~~-----------------~--------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~  301 (397)
                      .-..                 .        .+.........+..+.+|+.+.+......--...+. +++|+.+.+... 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-  298 (394)
T 4gt6_A          220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-  298 (394)
T ss_dssp             SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred             ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCCCc-
Confidence            0000                 0        000000011234566777777765433211112233 667777665311 


Q ss_pred             cccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708          302 LAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFG  381 (397)
Q Consensus       302 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~  381 (397)
                               +..++...|..|.+|+.+.+...++.+...-+....+|+.+.|..  +++.+. .....++++|+.+++.+
T Consensus       299 ---------i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~-~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          299 ---------ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPS--SVTKIP-ESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             ---------CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECT--TCCBCC-GGGGTTCTTCCEEEESS
T ss_pred             ---------ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECc--ccCEEh-HhHhhCCCCCCEEEECC
Confidence                     223333444557777777775556666544333224777777752  344443 22334667777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=2.2e-06  Score=68.85  Aligned_cols=91  Identities=11%  Similarity=0.107  Sum_probs=55.4

Q ss_pred             CCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHh
Q 047708          269 RLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLL  346 (397)
Q Consensus       269 ~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~  346 (397)
                      +|++|+++++.++.. -..+. +++|++|+++.|...++   .++..++.                    .    ....+
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~--------------------~----~~~~~  114 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQ--------------------L----ENLQK  114 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHT--------------------C----HHHHH
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHh--------------------c----ccccC
Confidence            466666666653221 11233 66666666666654433   22333333                    0    00114


Q ss_pred             hccceecccCCChhhhhhccccCCCCCccEEEEeccCCceE
Q 047708          347 RSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKC  387 (397)
Q Consensus       347 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~  387 (397)
                      +|++|+|++|+++++..... ...+++|++|+|++|+.++.
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCC
T ss_pred             CCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCc
Confidence            79999999999888865332 34689999999999998764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=2e-06  Score=69.14  Aligned_cols=82  Identities=15%  Similarity=0.236  Sum_probs=41.8

Q ss_pred             cCcEEEccCccCcCC-CccccCCCCCCEEEccCC-CCCc-cchhhhCC----CCCCeeecCCCCCCCCCchhhhcCCCCC
Q 047708          163 NLRTLSLHDCRRFGD-LPLIGELSLLEILDLSKS-DVSE-IPISFGRL----SHLRLLDLTDCDDLELIPRGVLSRLRKL  235 (397)
Q Consensus       163 ~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~-lp~~i~~l----~~L~~L~l~~~~~~~~~~~~~~~~l~~L  235 (397)
                      +|+.|++++|.++.. +..+..+++|++|++++| .++. --..+..+    ++|++|++++|..++......+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            566667766664321 234555666666666666 3441 11233332    2455666655555554333334555555


Q ss_pred             CEEEeeccc
Q 047708          236 EELYMSRSF  244 (397)
Q Consensus       236 ~~L~l~~~~  244 (397)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.10  E-value=2.3e-05  Score=72.49  Aligned_cols=260  Identities=11%  Similarity=0.066  Sum_probs=134.8

Q ss_pred             cccccCceEEccCCC---cccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccC
Q 047708           90 NKFEDLTGISLMFND---IHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINL  164 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~---~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L  164 (397)
                      ..+.+|+.+.+..+.   ++.+....  .|..|+.+.+..+ +..+....|..+.+|+.+.+......--...+..+..|
T Consensus        84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L  162 (394)
T 4gt6_A           84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSL  162 (394)
T ss_dssp             TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred             hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceeccccc
Confidence            457788888886542   44444333  6777777666543 45556666777888888877643221112345556666


Q ss_pred             cEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCC--------------------------
Q 047708          165 RTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTD--------------------------  217 (397)
Q Consensus       165 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------------------------  217 (397)
                      +.+.+..+-. .... .+. ..+|+.+.+...-...-...+..+.++.......                          
T Consensus       163 ~~i~~~~~~~-~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (394)
T 4gt6_A          163 HTVTLPDSVT-AIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS  240 (394)
T ss_dssp             CEEECCTTCC-EECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT
T ss_pred             ccccccceee-Eecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccccccccc
Confidence            6666654311 1111 221 2345555443321111111222222222221110                          


Q ss_pred             ---------CCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-c
Q 047708          218 ---------CDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-M  287 (397)
Q Consensus       218 ---------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~  287 (397)
                               ...+..+....+..+..|+.+.+......            .....+..+++|+.+.+.. ....++.. +
T Consensus       241 ~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~------------I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF  307 (394)
T 4gt6_A          241 QREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS------------IGTGAFMNCPALQDIEFSS-RITELPESVF  307 (394)
T ss_dssp             TCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE------------ECTTTTTTCTTCCEEECCT-TCCEECTTTT
T ss_pred             ccccceEEcCCcceEcccceeeecccccEEecccccce------------ecCcccccccccccccCCC-cccccCceee
Confidence                     01122333344667788888877543321            1234566788888888853 34445544 4


Q ss_pred             c-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHhhccceecccCCChhhhhhcc
Q 047708          288 S-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDL  366 (397)
Q Consensus       288 ~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~  366 (397)
                      . |.+|+.+.+..+          +..++...|..|.+|+++.+...++.++..-+....+|+.+++.+.  ...+. . 
T Consensus       308 ~~c~~L~~i~lp~~----------v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~--~~~~~-~-  373 (394)
T 4gt6_A          308 AGCISLKSIDIPEG----------ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGS--RSQWN-A-  373 (394)
T ss_dssp             TTCTTCCEEECCTT----------CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSC--HHHHH-T-
T ss_pred             cCCCCcCEEEeCCc----------ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCc--eeehh-h-
Confidence            4 888998887522          2234444556689999999966677776554433258888888752  22222 1 


Q ss_pred             ccCCCCCccEEEEe
Q 047708          367 ANDGFNELMFLGIF  380 (397)
Q Consensus       367 ~~~~~~~L~~L~i~  380 (397)
                       ...+..|+.+.+.
T Consensus       374 -~~~~~~L~~i~i~  386 (394)
T 4gt6_A          374 -ISTDSGLQNLPVA  386 (394)
T ss_dssp             -CBCCCCC------
T ss_pred             -hhccCCCCEEEeC
Confidence             2245666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.06  E-value=2.4e-06  Score=70.14  Aligned_cols=111  Identities=13%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             hcCCCcccEEEcCCC-CCCC-----CChhhcCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCCc----
Q 047708          135 FQGMKDLKVLDMGGI-RGFS-----LPSSLSFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVSE----  199 (397)
Q Consensus       135 ~~~l~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~----  199 (397)
                      +...++|++|++++| .+..     +...+...++|++|++++|.+...-     ..+...++|++|++++|.+..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            455666666666666 5521     2333444555666666666553211     123344556666666666552    


Q ss_pred             -cchhhhCCCCCCeeec--CCCCCCCCCch----hhhcCCCCCCEEEeeccccc
Q 047708          200 -IPISFGRLSHLRLLDL--TDCDDLELIPR----GVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       200 -lp~~i~~l~~L~~L~l--~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~  246 (397)
                       +...+...++|++|++  ++ +.++....    ..+...++|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             3445555566666666  44 33332111    11344556666666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.03  E-value=1.5e-05  Score=73.74  Aligned_cols=212  Identities=11%  Similarity=0.126  Sum_probs=132.3

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEE
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILD  191 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  191 (397)
                      +|++|+.+.+..+ ...++...|.++.+|+.+.+..+ +..+ ...+.++..|+.+.+..+... ..........|+.+.
T Consensus       160 ~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~  236 (394)
T 4fs7_A          160 TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNII  236 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEE
T ss_pred             ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEE
Confidence            7889999998754 45567777899999999988765 3333 335666777777776554321 112233446777777


Q ss_pred             ccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCC
Q 047708          192 LSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRL  270 (397)
Q Consensus       192 l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  270 (397)
                      +... ++.+. ..+..+..|+.+.+..+  ...+....+..+..++.+......+.              -..+..+.+|
T Consensus       237 ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~--------------~~~F~~~~~L  299 (394)
T 4fs7_A          237 IPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP--------------EKTFYGCSSL  299 (394)
T ss_dssp             ECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC--------------TTTTTTCTTC
T ss_pred             ECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec--------------cccccccccc
Confidence            7543 33333 35667788888877652  33455555777888888776543322              1345667888


Q ss_pred             CEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHhhc
Q 047708          271 TSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRS  348 (397)
Q Consensus       271 ~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L  348 (397)
                      +.+.+..+ ...+... +. +.+|+.+++...          +..++...|..|.+|+.+.+...+..++...+....+|
T Consensus       300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~----------v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL----------VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINL  368 (394)
T ss_dssp             CEEEECTT-CCEECTTTTTTCTTCCEECCCTT----------CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTC
T ss_pred             cccccccc-cceechhhhcCCCCCCEEEeCCc----------ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCC
Confidence            88888654 3344333 44 788888876421          22334444556888888888555766665433322578


Q ss_pred             cceeccc
Q 047708          349 EILALVD  355 (397)
Q Consensus       349 ~~L~l~~  355 (397)
                      +.++|..
T Consensus       369 ~~i~lp~  375 (394)
T 4fs7_A          369 KKVELPK  375 (394)
T ss_dssp             CEEEEEG
T ss_pred             CEEEECC
Confidence            8887763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.95  E-value=5.2e-06  Score=68.07  Aligned_cols=106  Identities=16%  Similarity=0.149  Sum_probs=71.8

Q ss_pred             CCCCccEEEccCC-CCcccC----hhhhcCCCcccEEEcCCCCCCC-----CChhhcCcccCcEEEccCccCcCC-----
Q 047708          113 ECPKLQALLLQEN-SLLVIP----DRFFQGMKDLKVLDMGGIRGFS-----LPSSLSFLINLRTLSLHDCRRFGD-----  177 (397)
Q Consensus       113 ~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~-----  177 (397)
                      ..+.|+.|++++| .+.+-.    ...+...++|++|++++|.+..     +...+...++|++|++++|.+...     
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4567777777777 544321    1224567788888888887732     344455567788888888877432     


Q ss_pred             CccccCCCCCCEEEc--cCCCCC-----ccchhhhCCCCCCeeecCCC
Q 047708          178 LPLIGELSLLEILDL--SKSDVS-----EIPISFGRLSHLRLLDLTDC  218 (397)
Q Consensus       178 ~~~~~~l~~L~~L~l--~~~~~~-----~lp~~i~~l~~L~~L~l~~~  218 (397)
                      ...+...++|++|++  ++|.+.     .+...+...++|++|++++|
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            225667778888888  778777     24566677788999998874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=2e-05  Score=68.13  Aligned_cols=102  Identities=21%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             CCccE--EEccCCCCcccC---hhhhcCCCcccEEEcCCCCCCCC---ChhhcCcccCcEEEccCccCcCCCccccCCC-
Q 047708          115 PKLQA--LLLQENSLLVIP---DRFFQGMKDLKVLDMGGIRGFSL---PSSLSFLINLRTLSLHDCRRFGDLPLIGELS-  185 (397)
Q Consensus       115 ~~L~~--L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-  185 (397)
                      +.|..  ++++.|....++   ..+..++++|+.|+|++|.+..+   |..+..+++|++|++++|.+... ..+..+. 
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~  219 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKG  219 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhccc
Confidence            44444  555666522222   22335789999999999998654   46677899999999999998654 3333333 


Q ss_pred             -CCCEEEccCCCCC-ccc-------hhhhCCCCCCeeecCC
Q 047708          186 -LLEILDLSKSDVS-EIP-------ISFGRLSHLRLLDLTD  217 (397)
Q Consensus       186 -~L~~L~l~~~~~~-~lp-------~~i~~l~~L~~L~l~~  217 (397)
                       +|++|++.+|.+. .+|       ..+..+++|+.|+-..
T Consensus       220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred             CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence             8999999999887 344       3477899999997543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=1.5e-05  Score=68.86  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=71.5

Q ss_pred             hcCCCcccE--EEcCCCCCCCCCh----hhcCcccCcEEEccCccCcCCC--c-cccCCCCCCEEEccCCCCCccchhhh
Q 047708          135 FQGMKDLKV--LDMGGIRGFSLPS----SLSFLINLRTLSLHDCRRFGDL--P-LIGELSLLEILDLSKSDVSEIPISFG  205 (397)
Q Consensus       135 ~~~l~~L~~--L~l~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~~--~-~~~~l~~L~~L~l~~~~~~~lp~~i~  205 (397)
                      +...+.|..  ++++.|....++.    ...++++|+.|++++|.+....  + .+..+++|+.|++++|.++.+ ..+.
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence            344444544  4566664433322    2245789999999999987643  2 556899999999999999876 3344


Q ss_pred             CCC--CCCeeecCCCCCCCCCc------hhhhcCCCCCCEEE
Q 047708          206 RLS--HLRLLDLTDCDDLELIP------RGVLSRLRKLEELY  239 (397)
Q Consensus       206 ~l~--~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~  239 (397)
                      .+.  +|+.|++.+|...+.+|      ..++..+++|+.|+
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            444  89999999966554454      23477899999987

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.77  E-value=0.00042  Score=63.51  Aligned_cols=77  Identities=9%  Similarity=0.105  Sum_probs=39.7

Q ss_pred             ccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708           91 KFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS  168 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  168 (397)
                      ...+++.+.+. ..++.++...  +|.+|+.+.+..+ +..+....|.++ +|..+.+..+ +..++...-...+|+.+.
T Consensus        44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~  119 (379)
T 4h09_A           44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFE  119 (379)
T ss_dssp             GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEE
T ss_pred             cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccccc
Confidence            34566676665 3455554433  6777777777543 555566666665 4555554332 222222222223555555


Q ss_pred             ccC
Q 047708          169 LHD  171 (397)
Q Consensus       169 l~~  171 (397)
                      +..
T Consensus       120 lp~  122 (379)
T 4h09_A          120 FPG  122 (379)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            543

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.96  E-value=0.00048  Score=69.93  Aligned_cols=56  Identities=14%  Similarity=0.077  Sum_probs=48.0

Q ss_pred             CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecCCcCeEEechHHHHHHH
Q 047708            1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQ   67 (397)
Q Consensus         1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~   67 (397)
                      |+++.|+++.++.+|+++|.           +.+.+++++|+++||++..+....|+|||++++++.
T Consensus       382 Ped~~I~~elLa~LW~aeGe-----------edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          382 PPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             CTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            78999999999999999981           127789999999999998655678999999999653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.84  E-value=0.0012  Score=70.20  Aligned_cols=60  Identities=15%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecCCcC--eEEechHHHHHHHHHhcc
Q 047708            1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEG--YVKMHDVVRYVAQQIASK   72 (397)
Q Consensus         1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~--~~~~hd~~~~~~~~~~~~   72 (397)
                      |+++.|+++.++.+|.+++            +.+++++++|++++|++......  .|+||+++|++++..+.+
T Consensus       390 ~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~  451 (1249)
T 3sfz_A          390 QKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS  451 (1249)
T ss_dssp             CTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred             CCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence            7899999999999998763            33788999999999999773322  599999999999988663

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.76  E-value=0.017  Score=52.69  Aligned_cols=125  Identities=18%  Similarity=0.136  Sum_probs=85.5

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEE
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEIL  190 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L  190 (397)
                      .+..|+.+.+..+ +..+....|.++..|+.+.+..+ +..+ ...+.++.+|+.+.+..+ +..... .+..+.+|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            5667777776543 44455556778888888888664 3333 335566777888887653 222222 67788888888


Q ss_pred             EccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708          191 DLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR  242 (397)
Q Consensus       191 ~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  242 (397)
                      .+..+.++.++ ..+.++.+|+.+.+..  .++.+....|.++++|+.+.+..
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence            88877777765 4677888888888864  36677777788888888887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.15  E-value=0.011  Score=44.89  Aligned_cols=54  Identities=15%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             eEEccCCCcc--cCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC
Q 047708           97 GISLMFNDIH--EVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG  151 (397)
Q Consensus        97 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  151 (397)
                      .++.+++.++  .+|..+ .+.|+.|++++|.+..++...|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5566666666  566433 23577777777777777777777777777777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.83  E-value=0.016  Score=43.98  Aligned_cols=54  Identities=22%  Similarity=0.401  Sum_probs=35.3

Q ss_pred             EEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708          189 ILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH  245 (397)
Q Consensus       189 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  245 (397)
                      .++.++.+++  .+|..+.  .+|++|++++ +.++.++.+.+..+++|+.|+|.+|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            5556666666  6665432  3567777777 666677776667777777777776654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=94.97  E-value=0.028  Score=54.63  Aligned_cols=58  Identities=17%  Similarity=0.098  Sum_probs=46.7

Q ss_pred             CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecC--CcCeEEechHHHHHHHHHh
Q 047708            1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG--KEGYVKMHDVVRYVAQQIA   70 (397)
Q Consensus         1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~~hd~~~~~~~~~~   70 (397)
                      |+|+.|+...++.+|.+++            +.+.+++++|++++|++...  ....|+||+++++++....
T Consensus       390 ~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          390 QKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             CTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             CCCCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            6788999999999997652            12678999999999998652  3347999999999998873

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.95  E-value=0.03  Score=45.57  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=37.0

Q ss_pred             cCCCcccEEEcCCC-CCC-----CCChhhcCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCC-----c
Q 047708          136 QGMKDLKVLDMGGI-RGF-----SLPSSLSFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVS-----E  199 (397)
Q Consensus       136 ~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~-----~  199 (397)
                      .+-+.|+.|+|+++ .++     .+...+..-+.|+.|++++|.+...-     ..+..-+.|++|++++|.+.     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34445555555543 332     12233334445555555555542110     12223345555555555554     2


Q ss_pred             cchhhhCCCCCCeeecCC
Q 047708          200 IPISFGRLSHLRLLDLTD  217 (397)
Q Consensus       200 lp~~i~~l~~L~~L~l~~  217 (397)
                      +...+..-+.|+.|++++
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            233444444566666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.90  E-value=0.042  Score=44.73  Aligned_cols=104  Identities=8%  Similarity=-0.016  Sum_probs=60.2

Q ss_pred             CCCccEEEccCC-CCcccC----hhhhcCCCcccEEEcCCCCCC-----CCChhhcCcccCcEEEccCccCcCCC-----
Q 047708          114 CPKLQALLLQEN-SLLVIP----DRFFQGMKDLKVLDMGGIRGF-----SLPSSLSFLINLRTLSLHDCRRFGDL-----  178 (397)
Q Consensus       114 ~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~-----  178 (397)
                      -+.|+.|+++++ .+++-.    ...+..-..|+.|+|++|.++     .+...+..-+.|++|++++|.+...-     
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            355666666664 443211    122355677788888877773     33444555667888888887764321     


Q ss_pred             ccccCCCCCCEEEccCCC---CC-----ccchhhhCCCCCCeeecCC
Q 047708          179 PLIGELSLLEILDLSKSD---VS-----EIPISFGRLSHLRLLDLTD  217 (397)
Q Consensus       179 ~~~~~l~~L~~L~l~~~~---~~-----~lp~~i~~l~~L~~L~l~~  217 (397)
                      ..+..-..|++|+++++.   +.     .+...+..-+.|+.|+++.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            134445568888887542   23     2334455556677777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	397
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 28/181 (15%)

Query: 82  ELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDL 141
           ++ D   +    +L  +SL  N + ++        L  L L  N +  +      G+  L
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 265

Query: 142 KVLDMGGIRGFSLPSSLSF---------------------LINLRTLSLHDCRRFGDLPL 180
             L +G  +  ++                           L NL  L+L+      D+  
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISP 324

Query: 181 IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240
           +  L+ L+ L  + + VS++  S   L+++  L        +L P   L+ L ++ +L +
Sbjct: 325 VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGL 380

Query: 241 S 241
           +
Sbjct: 381 N 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 23/155 (14%)

Query: 83  LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPD---------- 132
           LKD  ++    +LT + L  N I  +       KL  L L  N +  I            
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 133 ----------RFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIG 182
                          +K+L  L +      S  S +S L  L+ L   + +   D+  + 
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFANNK-VSDVSSLA 348

Query: 183 ELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTD 217
            L+ +  L    + +S++      L+ +  L L D
Sbjct: 349 NLTNINWLSAGHNQISDL-TPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 17/183 (9%)

Query: 103 NDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI 162
           N I ++        L  L L  N L  I       + +L  LD+   +  S  + LS L 
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQ-ISNLAPLSGLT 263

Query: 163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLE 222
            L  L L   +     PL G  +          +  E       L +L  L L   +  +
Sbjct: 264 KLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 321

Query: 223 LIPRGVLSRLRKLEELYMSR-------SFHHWQFEGEEDSSSN--AKFIELGSLSRLTSL 273
           + P   +S L KL+ L+ +        S  +        +  N  +    L +L+R+T L
Sbjct: 322 ISP---VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 378

Query: 274 HIH 276
            ++
Sbjct: 379 GLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 177 DLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLE 236
           D     +L  +  L   +  +  I      L++L  ++ ++    ++ P   L  L KL 
Sbjct: 36  DTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLV 91

Query: 237 ELYMSRSFHHWQF 249
           ++ M+ +      
Sbjct: 92  DILMNNNQIADIT 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 122 LQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLI 181
              N+              L+ L++   +   LP+       L  L         ++P  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVP-- 320

Query: 182 GELSLLEILDLSKSDVSEIPISFGRLSHLRL 212
                L+ L +  + + E P     +  LR+
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 86  WPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLD 145
               +    L  +++  N + E+P     P+L+ L+   N L  +P+      ++LK L 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPALP--PRLERLIASFNHLAEVPE----LPQNLKQLH 330

Query: 146 MGGIRGFSLPSSLSFLINLR 165
           +        P     + +LR
Sbjct: 331 VEYNPLREFPDIPESVEDLR 350

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 30/212 (14%), Positives = 78/212 (36%), Gaps = 6/212 (2%)

Query: 88  SINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLD 145
                ++L  + L+ N I ++         KL+ L L +N L  +P++  + +++L+V +
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

Query: 146 MGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISF 204
               +      +    + +  L  +  +  G        +  L  + ++ ++++ IP   
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 169

Query: 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264
                L  L L     +  +    L  L  L +L +S +       G   ++ + + + L
Sbjct: 170 --PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 265 GSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFS 296
            +   +        +  I    +   N+++  
Sbjct: 227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 32/159 (20%)

Query: 86  WPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLD 145
             +    + L+ I +   +I  +P  L  P L  L L  N +  +     +G+ +L  L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 146 MG------------------------GIRGFSLPSSLSFLINLRTLSLHDCR-------R 174
           +                           +   +P  L+    ++ + LH+          
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 175 FGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLL 213
           F       + +    + L  + V    I       + + 
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 187 LEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242
             +LDL  + ++EI    F  L +L  L L +    ++ P G  + L KLE LY+S+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSK 88

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 153 SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLS 193
           +LP  L+ L  L +L++      G++P  G L   ++   +
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 7/125 (5%)

Query: 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD 177
           + L L    L V+     + +  +  LD+   R  +LP +L+ L  L  L   D     +
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-N 57

Query: 178 LPLIGELSLLEILDLSKSDVSEIPI--SFGRLSHLRLLDLTD--CDDLELIPRGVLSRLR 233
           +  +  L  L+ L L  + + +            L LL+L        E I   +   L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 234 KLEEL 238
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP 201
           +VL +   +  ++   L  L+ +  L L   R     P +  L  LE+L  S + +  + 
Sbjct: 1   RVLHLAH-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 202 ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241
                L  L+ L L +    +      L    +L  L + 
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 2/125 (1%)

Query: 177 DLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRL--RK 234
                        LDL    +  I      L     +D +D +  +L    +L RL    
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL 69

Query: 235 LEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTS 294
           +    + R          + +        L  L  L  L        +        N   
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 295 FSITI 299
           + + +
Sbjct: 130 YRLYV 134

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 166 TLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTD 217
           T    D  +  D+  +  L  L  + L  + +S++       S+L ++ LT+
Sbjct: 176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS 156
                 L +    +  +P    + +K L+      ++   LP+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--KLPT 240

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.45
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.99
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.81

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=2.4e-20  Score=171.16  Aligned_cols=266  Identities=20%  Similarity=0.258  Sum_probs=140.6

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh---
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS---  156 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~---  156 (397)
                      +..+..+..+..+++|++|++++|.++++++..++++|+.|++++|.+..+++  +.++++|+.|+++++.+..++.   
T Consensus        53 ~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~  130 (384)
T d2omza2          53 RLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKN  130 (384)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred             CCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc--ccccccccccccccccccccccccc
Confidence            44455556666778888888888888777765577888888888888766654  5778888888877665432211   


Q ss_pred             -------------------------------------------------------------hhcCcccCcEEEccCccCc
Q 047708          157 -------------------------------------------------------------SLSFLINLRTLSLHDCRRF  175 (397)
Q Consensus       157 -------------------------------------------------------------~~~~l~~L~~L~l~~~~~~  175 (397)
                                                                                   ....+++++.++++++.+.
T Consensus       131 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~  210 (384)
T d2omza2         131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS  210 (384)
T ss_dssp             CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccC
Confidence                                                                         1222233444444444332


Q ss_pred             CCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCcc
Q 047708          176 GDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDS  255 (397)
Q Consensus       176 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  255 (397)
                      ... ....+++|++|++++|.++.+| .+..+++|+.|++++ +.++.++.  ++.+++|++|+++++.+.+        
T Consensus       211 ~~~-~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--~~~~~~L~~L~l~~~~l~~--------  277 (384)
T d2omza2         211 DIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLGANQISN--------  277 (384)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCSEEECCSSCCCC--------
T ss_pred             CCC-cccccCCCCEEECCCCCCCCcc-hhhcccccchhcccc-CccCCCCc--ccccccCCEeeccCcccCC--------
Confidence            221 2233444444444444444433 344444455555544 22333332  4444455555554444432        


Q ss_pred             CccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cccc
Q 047708          256 SSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRI  334 (397)
Q Consensus       256 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~  334 (397)
                           ...+..++.++.+.+..+....++....+++++.|+++.+....-      ..+..     +++|++|++ ++.+
T Consensus       278 -----~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l------~~l~~-----l~~L~~L~L~~n~l  341 (384)
T d2omza2         278 -----ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI------SPVSS-----LTKLQRLFFANNKV  341 (384)
T ss_dssp             -----CGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC------GGGGG-----CTTCCEEECCSSCC
T ss_pred             -----CCccccccccccccccccccccccccchhcccCeEECCCCCCCCC------ccccc-----CCCCCEEECCCCCC
Confidence                 122344455555555555544433222256666666655543211      11222     556666666 5555


Q ss_pred             ccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708          335 SGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC  382 (397)
Q Consensus       335 ~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c  382 (397)
                      +.+| .+..+ ++|++|++++ +.+++++   ...++++|+.|+|+++
T Consensus       342 ~~l~-~l~~l-~~L~~L~l~~-N~l~~l~---~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SDVS-SLANL-TNINWLSAGH-NQISDLT---PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCG-GGGGC-TTCCEEECCS-SCCCBCG---GGTTCTTCSEEECCCE
T ss_pred             CCCh-hHcCC-CCCCEEECCC-CcCCCCh---hhccCCCCCEeeCCCC
Confidence            5555 34444 4666666665 3555554   2346666666666553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=4.6e-20  Score=169.24  Aligned_cols=263  Identities=19%  Similarity=0.221  Sum_probs=191.0

Q ss_pred             cccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708           90 NKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL  169 (397)
Q Consensus        90 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  169 (397)
                      ..+.+++.|++.++.++.+.....+++|++|++++|.+.++++  ++++++|++|++++|.+..++. ++.+++|+.|++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc-cccccccccccc
Confidence            3577899999999999988665589999999999999988886  7999999999999999987764 889999999999


Q ss_pred             cCccCcCCCc----------------------------------------------------------------cccCCC
Q 047708          170 HDCRRFGDLP----------------------------------------------------------------LIGELS  185 (397)
Q Consensus       170 ~~~~~~~~~~----------------------------------------------------------------~~~~l~  185 (397)
                      +++.......                                                                ....++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            8876543211                                                                123345


Q ss_pred             CCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccC
Q 047708          186 LLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG  265 (397)
Q Consensus       186 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  265 (397)
                      +++.++++++.++.++. .+.+++|+.|++++ +.++.++.  +..+++|+.|++.+|.+.+             ...+.
T Consensus       198 ~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------~~~~~  260 (384)
T d2omza2         198 NLESLIATNNQISDITP-LGILTNLDELSLNG-NQLKDIGT--LASLTNLTDLDLANNQISN-------------LAPLS  260 (384)
T ss_dssp             TCSEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCC-------------CGGGT
T ss_pred             ccceeeccCCccCCCCc-ccccCCCCEEECCC-CCCCCcch--hhcccccchhccccCccCC-------------CCccc
Confidence            56666666666665542 45566777777777 44555543  6677777777777776654             23466


Q ss_pred             CCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHH
Q 047708          266 SLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNL  344 (397)
Q Consensus       266 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~  344 (397)
                      .+++|++|+++++....++....++.++.+.+..+....      +..+..     +.+++.|++ ++.+..++. +..+
T Consensus       261 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~------~~~~~~-----~~~l~~L~ls~n~l~~l~~-l~~l  328 (384)
T d2omza2         261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED------ISPISN-----LKNLTYLTLYFNNISDISP-VSSL  328 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC------CGGGGG-----CTTCSEEECCSSCCSCCGG-GGGC
T ss_pred             ccccCCEeeccCcccCCCCcccccccccccccccccccc------ccccch-----hcccCeEECCCCCCCCCcc-cccC
Confidence            677788888877776666643347777777766554321      122333     788889999 777777763 5555


Q ss_pred             HhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeec
Q 047708          345 LLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLN  390 (397)
Q Consensus       345 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~  390 (397)
                       ++|++|++++| .++.++   ..+++|+|++|++++| .++.++.
T Consensus       329 -~~L~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N-~l~~l~~  368 (384)
T d2omza2         329 -TKLQRLFFANN-KVSDVS---SLANLTNINWLSAGHN-QISDLTP  368 (384)
T ss_dssp             -TTCCEEECCSS-CCCCCG---GGGGCTTCCEEECCSS-CCCBCGG
T ss_pred             -CCCCEEECCCC-CCCCCh---hHcCCCCCCEEECCCC-cCCCChh
Confidence             69999999986 677765   2458999999999887 5777664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.8e-20  Score=159.87  Aligned_cols=198  Identities=20%  Similarity=0.154  Sum_probs=170.8

Q ss_pred             cccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccC
Q 047708           92 FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHD  171 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  171 (397)
                      ...+..++.++++++.+|+.+. +.++.|++++|.+..++...|.++++|++|++++|.+..++. ++.+++|++|++++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             cCCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccc
Confidence            3445667888888888887552 579999999999999998888999999999999999987764 57899999999999


Q ss_pred             ccCcCCCccccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          172 CRRFGDLPLIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       172 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      |.+...++.+..+++|+.|+++++.+..++ ..+..+.++++|++.+ +.++.++...+..+++|+.+++++|.+.+   
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~---  162 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE---  162 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC---
T ss_pred             ccccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhcccccccccc---
Confidence            999877778899999999999999888665 4667889999999999 67788888878899999999999999876   


Q ss_pred             CCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  303 (397)
                              .....+..+++|++|++++|++..+|..+. +++|+.|++++|+-.
T Consensus       163 --------~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 --------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             --------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             --------cCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence                    234567889999999999999999998877 999999999988743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=5.2e-21  Score=170.83  Aligned_cols=242  Identities=19%  Similarity=0.194  Sum_probs=111.0

Q ss_pred             CccEEEccCCCCc---ccChhhhcCCCcccEEEcCC-CCC-CCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCE
Q 047708          116 KLQALLLQENSLL---VIPDRFFQGMKDLKVLDMGG-IRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEI  189 (397)
Q Consensus       116 ~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~  189 (397)
                      +++.|+++++.+.   .+|.. ++++++|++|++++ +.+ +.+|.+++++++|++|++++|.+.+.++ .+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            3444555444422   23333 35555555555554 333 3455555555555555555555544443 4455555555


Q ss_pred             EEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCC-CEEEeecccccccccCCCccCccccccccCCC
Q 047708          190 LDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL-EELYMSRSFHHWQFEGEEDSSSNAKFIELGSL  267 (397)
Q Consensus       190 L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  267 (397)
                      +++..|.+. .+|..+.++++|+++++++|...+.+|.. +..+..+ +.+++.+|.+.+..           +..+..+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~-----------~~~~~~l  197 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI-----------PPTFANL  197 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-----------CGGGGGC
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccccccc-----------ccccccc
Confidence            555555433 44555555555555555554333344443 3444333 45555555554421           2222222


Q ss_pred             CCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccc-cchHHHHH
Q 047708          268 SRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRIS-GVHSWIKN  343 (397)
Q Consensus       268 ~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~-~lp~~~~~  343 (397)
                      . +..+++..+. ...+|..+. +++|+.+++..+.....     +..+..     +++++.|++ ++.+. .+|.++..
T Consensus       198 ~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-----~~~~~~-----~~~L~~L~Ls~N~l~g~iP~~l~~  266 (313)
T d1ogqa_         198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-----LGKVGL-----SKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-----GGGCCC-----CTTCCEEECCSSCCEECCCGGGGG
T ss_pred             c-cccccccccccccccccccccccccccccccccccccc-----cccccc-----ccccccccCccCeecccCChHHhC
Confidence            2 2234444333 233333333 44555554443332211     111222     444555555 33343 45655555


Q ss_pred             HHhhccceecccCCChh-hhhhccccCCCCCccEEEEeccCCce
Q 047708          344 LLLRSEILALVDVNDLE-NIVSDLANDGFNELMFLGIFGCNEMK  386 (397)
Q Consensus       344 ~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~L~~L~i~~c~~L~  386 (397)
                      + ++|++|+|++ +.++ .+|   ..+.+++|+.+.+.+++.+.
T Consensus       267 L-~~L~~L~Ls~-N~l~g~iP---~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         267 L-KFLHSLNVSF-NNLCGEIP---QGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             C-TTCCEEECCS-SEEEEECC---CSTTGGGSCGGGTCSSSEEE
T ss_pred             C-CCCCEEECcC-CcccccCC---CcccCCCCCHHHhCCCcccc
Confidence            5 4666666665 3343 333   12345556666565555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2.3e-18  Score=152.87  Aligned_cols=260  Identities=17%  Similarity=0.177  Sum_probs=130.2

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccC
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~  174 (397)
                      +.++-++.+++.+|..+ .+.++.|++++|.+..+++..|.++++|++|+++++.+..+ |..+..+++|++|++++|.+
T Consensus        13 ~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            34444444455555433 24455555555555555554455555666666655555444 33455555666666655555


Q ss_pred             cCCCccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeecccccccccCC
Q 047708          175 FGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFEGE  252 (397)
Q Consensus       175 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  252 (397)
                      ...+..  ....+..|++..+.+..++. .+.....+..+....+.... ......+..+++|+.+++.+|.+..     
T Consensus        92 ~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-----  164 (305)
T d1xkua_          92 KELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----  164 (305)
T ss_dssp             SBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----
T ss_pred             CcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-----
Confidence            433322  22345555555555554443 23344445555544422111 1111224455555666655554432     


Q ss_pred             CccCccccccccCCCCCCCEEEEeccCCCC-CCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec
Q 047708          253 EDSSSNAKFIELGSLSRLTSLHIHIPNGKI-MSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ  330 (397)
Q Consensus       253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l  330 (397)
                             +..  ..+++|++|++++|.... .+..+. ++.++.|+++.+.....         ....+..+++|+.|++
T Consensus       165 -------l~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~---------~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         165 -------IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV---------DNGSLANTPHLRELHL  226 (305)
T ss_dssp             -------CCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE---------CTTTGGGSTTCCEEEC
T ss_pred             -------cCc--ccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccc---------ccccccccccceeeec
Confidence                   111  123455566665555322 222334 55556665554433211         1111122556666666


Q ss_pred             -ccccccchHHHHHHHhhccceecccCCChhhhhhcc-----ccCCCCCccEEEEeccC
Q 047708          331 -DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDL-----ANDGFNELMFLGIFGCN  383 (397)
Q Consensus       331 -~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~-----~~~~~~~L~~L~i~~c~  383 (397)
                       ++.++.+|.++..+ ++|++|+|++ +.++.++...     .....++|+.|++.++|
T Consensus       227 ~~N~L~~lp~~l~~l-~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         227 NNNKLVKVPGGLADH-KYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CSSCCSSCCTTTTTC-SSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccccccccc-cCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc
Confidence             55566676666665 5788888877 4566654221     12345678888888876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=1.4e-19  Score=161.43  Aligned_cols=244  Identities=19%  Similarity=0.209  Sum_probs=185.1

Q ss_pred             ccCceEEccCCCccc---CCCcC-CCCCccEEEccC-CC-CcccChhhhcCCCcccEEEcCCCCCCC-CChhhcCcccCc
Q 047708           93 EDLTGISLMFNDIHE---VPDEL-ECPKLQALLLQE-NS-LLVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLR  165 (397)
Q Consensus        93 ~~l~~l~l~~~~~~~---~~~~~-~~~~L~~L~l~~-~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  165 (397)
                      .+++.|++.++.+.+   +|+.+ +++.|++|++++ |. .+.+|.. +.++++|++|++++|.+.. .+..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhc
Confidence            368889999998875   66766 899999999987 56 4478876 5899999999999999844 466688899999


Q ss_pred             EEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCC-CeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708          166 TLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHL-RLLDLTDCDDLELIPRGVLSRLRKLEELYMSR  242 (397)
Q Consensus       166 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L-~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  242 (397)
                      ++++++|......| .++.+++|+++++++|.+. .+|..++.+..+ +.+.+++|...+..|.. ++.+.. ..+++..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~-~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNL-AFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCC-SEEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-cccccc-ccccccc
Confidence            99999998877766 8999999999999999887 788888888876 77888874433344443 666654 4688888


Q ss_pred             ccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708          243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR  321 (397)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~  321 (397)
                      +...+           ..+..+..+++|+.++++++.....+..++ +++|+.|+++.|...... +   ..+..     
T Consensus       207 ~~~~~-----------~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~i-P---~~l~~-----  266 (313)
T d1ogqa_         207 NMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL-P---QGLTQ-----  266 (313)
T ss_dssp             SEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC-C---GGGGG-----
T ss_pred             ccccc-----------cccccccccccccccccccccccccccccccccccccccCccCeecccC-C---hHHhC-----
Confidence            77776           345667778889999988888555555666 888999998877654332 2   24444     


Q ss_pred             cccccceec-ccccc-cchHHHHHHHhhccceecccCCChhh
Q 047708          322 CSRAMGLSQ-DMRIS-GVHSWIKNLLLRSEILALVDVNDLEN  361 (397)
Q Consensus       322 ~~~L~~L~l-~~~~~-~lp~~~~~~~~~L~~L~l~~c~~l~~  361 (397)
                      +++|+.|++ ++.++ .+|.. ..+ ++|+.+++++++.+..
T Consensus       267 L~~L~~L~Ls~N~l~g~iP~~-~~L-~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         267 LKFLHSLNVSFNNLCGEIPQG-GNL-QRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCS-TTG-GGSCGGGTCSSSEEES
T ss_pred             CCCCCEEECcCCcccccCCCc-ccC-CCCCHHHhCCCccccC
Confidence            778888988 66665 67843 444 6888888888665543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=1.6e-18  Score=153.82  Aligned_cols=246  Identities=16%  Similarity=0.153  Sum_probs=194.0

Q ss_pred             CccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEcc
Q 047708          116 KLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLS  193 (397)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~  193 (397)
                      ..+.++.++..+..+|..+   .+++++|++++|.+..+|+ .+.++++|++|++++|.+....+ .+..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4677888888888888754   3689999999999999976 68999999999999999988766 79999999999999


Q ss_pred             CCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEE
Q 047708          194 KSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSL  273 (397)
Q Consensus       194 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  273 (397)
                      +|+++.+|..+  ...++.|...+ +.+..++...+.....+..+....+......         .....+..+++|+.+
T Consensus        88 ~n~l~~l~~~~--~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~---------~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          88 KNQLKELPEKM--PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSG---------IENGAFQGMKKLSYI  155 (305)
T ss_dssp             SSCCSBCCSSC--CTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------BCTTGGGGCTTCCEE
T ss_pred             CCccCcCccch--hhhhhhhhccc-cchhhhhhhhhhccccccccccccccccccC---------CCccccccccccCcc
Confidence            99999998754  46889999988 6777787776778888899988777654321         334567778999999


Q ss_pred             EEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccch-HHHHHHHhhccce
Q 047708          274 HIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVH-SWIKNLLLRSEIL  351 (397)
Q Consensus       274 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp-~~~~~~~~~L~~L  351 (397)
                      .++++....+|... +++|+.|+++.+.......    ..+..     +..++.|.+ ++.+..++ .++..+ ++|++|
T Consensus       156 ~l~~n~l~~l~~~~-~~~L~~L~l~~n~~~~~~~----~~~~~-----~~~l~~L~~s~n~l~~~~~~~~~~l-~~L~~L  224 (305)
T d1xkua_         156 RIADTNITTIPQGL-PPSLTELHLDGNKITKVDA----ASLKG-----LNNLAKLGLSFNSISAVDNGSLANT-PHLREL  224 (305)
T ss_dssp             ECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECT----GGGTT-----CTTCCEEECCSSCCCEECTTTGGGS-TTCCEE
T ss_pred             ccccCCccccCccc-CCccCEEECCCCcCCCCCh----hHhhc-----ccccccccccccccccccccccccc-ccceee
Confidence            99999987776543 7899999998766543321    23333     788899988 66777664 455555 699999


Q ss_pred             ecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecC
Q 047708          352 ALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNS  391 (397)
Q Consensus       352 ~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~  391 (397)
                      +|++| .++.++..  ...+++|++|++++| +|+.|+..
T Consensus       225 ~L~~N-~L~~lp~~--l~~l~~L~~L~Ls~N-~i~~i~~~  260 (305)
T d1xkua_         225 HLNNN-KLVKVPGG--LADHKYIQVVYLHNN-NISAIGSN  260 (305)
T ss_dssp             ECCSS-CCSSCCTT--TTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             ecccc-cccccccc--cccccCCCEEECCCC-ccCccChh
Confidence            99995 78887643  358999999999998 58888654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.5e-18  Score=147.15  Aligned_cols=187  Identities=20%  Similarity=0.116  Sum_probs=159.0

Q ss_pred             ecCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC
Q 047708           78 KAGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP  155 (397)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  155 (397)
                      ..+..+..+|.. -.+++++|++++|.++.++.. + ++++|+.|++++|.+..++.  +..+++|++|++++|.+...+
T Consensus        17 C~~~~L~~iP~~-lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~   93 (266)
T d1p9ag_          17 CDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLP   93 (266)
T ss_dssp             CTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCC
T ss_pred             ccCCCCCeeCcC-cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccccccccccc
Confidence            345556666643 235799999999999997654 3 89999999999999888775  578999999999999998888


Q ss_pred             hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708          156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR  233 (397)
Q Consensus       156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  233 (397)
                      ..+..+++|++|+++++.+....+ .+..+.++++|++.+|.++.+|. .+..+++|+.+++++ +.++.++.+.++.++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLE  172 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCT
T ss_pred             cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc-ccccccCcccccccc
Confidence            889999999999999999877665 77899999999999999998875 456789999999999 677788877789999


Q ss_pred             CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCC
Q 047708          234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNG  280 (397)
Q Consensus       234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  280 (397)
                      +|++|++++|.+..            ++..+..+++|+.|++++|..
T Consensus       173 ~L~~L~Ls~N~L~~------------lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         173 NLDTLLLQENSLYT------------IPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TCCEEECCSSCCCC------------CCTTTTTTCCCSEEECCSCCB
T ss_pred             ccceeecccCCCcc------------cChhHCCCCCCCEEEecCCCC
Confidence            99999999999873            445666789999999999873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.8e-17  Score=145.31  Aligned_cols=212  Identities=24%  Similarity=0.290  Sum_probs=165.2

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCC-CCCCCC-
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG-IRGFSL-  154 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l-  154 (397)
                      .+..+..+|.. -.+.++.|++++|.++.++...  +++.|+.|++++|.+..++...+..+..++.+.... +.+..+ 
T Consensus        19 ~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          19 PQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             CSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            33445555543 2356889999999998877643  788999999999988888877788888888887754 444555 


Q ss_pred             ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCC
Q 047708          155 PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRL  232 (397)
Q Consensus       155 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l  232 (397)
                      +..+.++++|++|++++|.+....+ .+....+|+.+++.+|.++.+|. .+..+++|++|++++ +.++.++...+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTC
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc-Ccccccchhhhccc
Confidence            5578888999999999988866555 67788889999999998887764 567888999999998 56777777778889


Q ss_pred             CCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcc
Q 047708          233 RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       233 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~  303 (397)
                      ++|+.+++.+|.+.+           ..+..+..+++|++|++++|.+..++. .+. +++|+.|++++|+..
T Consensus       177 ~~L~~l~l~~N~l~~-----------i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         177 HSLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccchhhhhhccccc-----------cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            999999999988876           335677888899999999998777664 366 888999998877643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-17  Score=145.32  Aligned_cols=217  Identities=19%  Similarity=0.219  Sum_probs=172.2

Q ss_pred             eEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCccCc
Q 047708           97 GISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCRRF  175 (397)
Q Consensus        97 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~  175 (397)
                      .+..++.+++.+|..+ .+.++.|++++|.+..++...|.++++|++|+++++.+..++ ..+..+..++.+....+...
T Consensus        15 ~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            4566677788887655 257899999999999999888999999999999999996654 45566888999887655443


Q ss_pred             -CCCc-cccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC
Q 047708          176 -GDLP-LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE  252 (397)
Q Consensus       176 -~~~~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  252 (397)
                       ...+ .+..+++|++|++++|.+..++ ..+....+|+.+++.+ +.++.+|...+..+++|++|++.+|.+.+     
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-----  167 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISS-----  167 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCE-----
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCcccc-----
Confidence             4434 7899999999999999988665 4677889999999999 77888888778999999999999999875     


Q ss_pred             CccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec
Q 047708          253 EDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ  330 (397)
Q Consensus       253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l  330 (397)
                            .....+..+++|+.+.+++|++..+ |..+. +++|+.|+++.+..... .+   ..+..     +++|+.|++
T Consensus       168 ------l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~-~~---~~~~~-----~~~L~~L~l  232 (284)
T d1ozna_         168 ------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PT---EALAP-----LRALQYLRL  232 (284)
T ss_dssp             ------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CH---HHHTT-----CTTCCEEEC
T ss_pred             ------cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc-cc---ccccc-----ccccCEEEe
Confidence                  2245678899999999999996555 56677 99999999998875432 11   34444     888999999


Q ss_pred             -ccccc
Q 047708          331 -DMRIS  335 (397)
Q Consensus       331 -~~~~~  335 (397)
                       ++.+.
T Consensus       233 ~~N~l~  238 (284)
T d1ozna_         233 NDNPWV  238 (284)
T ss_dssp             CSSCEE
T ss_pred             cCCCCC
Confidence             54443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=5.8e-17  Score=137.19  Aligned_cols=190  Identities=19%  Similarity=0.265  Sum_probs=156.7

Q ss_pred             CCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcE
Q 047708           87 PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRT  166 (397)
Q Consensus        87 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  166 (397)
                      .....+.+++.|++.++.++.++....+++|+.|++++|.+..+.+  +..+++|++++++++.+..++ .+.++++|++
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             CCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-cccccccccc
Confidence            3445678899999999999988765589999999999999877765  789999999999999887765 4888999999


Q ss_pred             EEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          167 LSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       167 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++++++... ..+.+...+.+..+.+..+.+...+ .+..+++|++|.+++ +.+...+.  ++++++|++|++++|.+.
T Consensus       112 l~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~-n~~~~~~~--l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         112 LDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc-ccchhccccchhhhhchhhhhchhh-hhccccccccccccc-cccccchh--hcccccceecccCCCccC
Confidence            999988763 3446678889999999888777553 467889999999998 45555554  789999999999999876


Q ss_pred             ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEE
Q 047708          247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSIT  298 (397)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~  298 (397)
                      +             +..++.+++|++|++++|++..++. +. +++|+.|+++
T Consensus       187 ~-------------l~~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 D-------------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             C-------------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             C-------------ChhhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            4             3457888999999999999888874 56 9999999987

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3.1e-17  Score=136.94  Aligned_cols=166  Identities=28%  Similarity=0.339  Sum_probs=112.0

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      .+.+++.|++.++.+..++....+++|++|++++|.+..+++  ++.+++|++|++++|.+..+| .+..+++|+.|+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc-cccccccccccccc
Confidence            456777888887777776654467777777777777666664  467777777777777776665 36677777777777


Q ss_pred             CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708          171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE  250 (397)
Q Consensus       171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  250 (397)
                      +|... .++.+..+++++.++++.+.++..+ .+..+++|+++++++ +.++.++.  ++++++|++|++++|.+..   
T Consensus       121 ~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~-n~l~~i~~--l~~l~~L~~L~Ls~N~i~~---  192 (210)
T d1h6ta2         121 HNGIS-DINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD---  192 (210)
T ss_dssp             TSCCC-CCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB---
T ss_pred             ccccc-ccccccccccccccccccccccccc-ccccccccccccccc-cccccccc--ccCCCCCCEEECCCCCCCC---
Confidence            77653 3445667777777777777666543 455677777777777 34555554  6677777777777776542   


Q ss_pred             CCCccCccccccccCCCCCCCEEEEec
Q 047708          251 GEEDSSSNAKFIELGSLSRLTSLHIHI  277 (397)
Q Consensus       251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~  277 (397)
                                +..+..+++|+.|++++
T Consensus       193 ----------l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 ----------LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----------CGGGTTCTTCSEEEEEE
T ss_pred             ----------ChhhcCCCCCCEEEccC
Confidence                      23466667777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=4e-17  Score=135.14  Aligned_cols=148  Identities=20%  Similarity=0.261  Sum_probs=88.2

Q ss_pred             ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708           91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH  170 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  170 (397)
                      .+++++.|++.++.+..+.....+++|++|++++|.+..+++  ++++++|++|++++|.+..++. +.++++|++|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-ccccccccccccc
Confidence            456667777777766665544456666666666666555554  4666666666666666655543 5566666666666


Q ss_pred             CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++.... .+.+..+++|+.|++++|.+..++ .+..+++|+.|++.+ +.++.++.  ++++++|++|++++|.++
T Consensus       115 ~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         115 NNQITD-IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSS-NQVTDLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             SSCCCC-CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccccc-ccccchhhhhHHhhhhhhhhcccc-ccccccccccccccc-ccccCCcc--ccCCCCCCEEECCCCCCC
Confidence            655432 234555666666666666655544 355566666666665 34444543  556666666666666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.6e-18  Score=141.50  Aligned_cols=182  Identities=18%  Similarity=0.239  Sum_probs=144.6

Q ss_pred             cccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccC
Q 047708           92 FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHD  171 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  171 (397)
                      ++++....+..+.+.+......+++++.|++++|.+.++..  +..+++|++|++++|.+..++. ++++++|++|++++
T Consensus        17 l~~~i~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~   93 (199)
T d2omxa2          17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHHHHHHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             HHHHHHHHhCCCCCCCccCHHHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc-ccCCcccccccccc
Confidence            33334445555555554433467889999999999887764  6889999999999999987765 88999999999999


Q ss_pred             ccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708          172 CRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG  251 (397)
Q Consensus       172 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  251 (397)
                      |.+.. .+.+..+++|+.|+++++....++ .+..+++|+.|++++ +.+..++.  +..+++|+.|++.+|.+.+    
T Consensus        94 n~~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~--l~~~~~L~~L~l~~n~l~~----  164 (199)
T d2omxa2          94 NQIAD-ITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSS-NTISDISA--LSGLTSLQQLNFSSNQVTD----  164 (199)
T ss_dssp             SCCCC-CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCSEEECCSSCCCC----
T ss_pred             ccccc-cccccccccccccccccccccccc-ccchhhhhHHhhhhh-hhhccccc--ccccccccccccccccccC----
Confidence            98744 456889999999999988877664 578899999999998 55666664  8899999999999998764    


Q ss_pred             CCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEE
Q 047708          252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSF  295 (397)
Q Consensus       252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L  295 (397)
                               +..++++++|++|++++|++..++ .+. +++|+.|
T Consensus       165 ---------l~~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 ---------LKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             ---------CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ---------CccccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence                     345788999999999999988776 455 8888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=7.9e-17  Score=134.45  Aligned_cols=165  Identities=21%  Similarity=0.285  Sum_probs=140.5

Q ss_pred             CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708          113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL  192 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  192 (397)
                      .+..|+.|++++|.+..++.  +..+++|++|++++|.+..++. ++.+++|++|++++|.+.. ++.+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccc-ccccccccccccccc
Confidence            46789999999999888775  6889999999999999988774 7889999999999998754 557889999999999


Q ss_pred             cCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCE
Q 047708          193 SKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTS  272 (397)
Q Consensus       193 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  272 (397)
                      .+|.+..++ .+..+++++.+++++ +.++..+.  ++.+++|+++++++|.+.+             +..+..+++|++
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~-n~l~~~~~--~~~l~~L~~l~l~~n~l~~-------------i~~l~~l~~L~~  182 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISD-------------IVPLAGLTKLQN  182 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCC-------------CGGGTTCTTCCE
T ss_pred             ccccccccc-ccccccccccccccc-cccccccc--ccccccccccccccccccc-------------cccccCCCCCCE
Confidence            999888775 678899999999988 55666554  7889999999999998864             345788999999


Q ss_pred             EEEeccCCCCCCCccc-CCCccEEEEEe
Q 047708          273 LHIHIPNGKIMSSDMS-FQNLTSFSITI  299 (397)
Q Consensus       273 L~l~~~~~~~~~~~~~-~~~L~~L~l~~  299 (397)
                      |++++|.+..++ .+. +++|+.|+++.
T Consensus       183 L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             EECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            999999988887 466 99999999873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2e-15  Score=127.48  Aligned_cols=178  Identities=22%  Similarity=0.280  Sum_probs=150.4

Q ss_pred             cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708           79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL  158 (397)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  158 (397)
                      .+..+..++.+..+++|+.|++++|.+..+.+..++++++.+++++|.+..++.  +.++++|++++++++....++ .+
T Consensus        49 ~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~~~~~~~~~-~~  125 (227)
T d1h6ua2          49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT-PL  125 (227)
T ss_dssp             TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCG-GG
T ss_pred             CCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc--ccccccccccccccccccccc-hh
Confidence            355677777788999999999999999988777799999999999999877764  689999999999998876554 36


Q ss_pred             cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEE
Q 047708          159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL  238 (397)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  238 (397)
                      .....++.+.++.+.+.. ...+..+++|++|++.+|.+...+ .++++++|+.|++++| .++.++.  ++++++|++|
T Consensus       126 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~--l~~l~~L~~L  200 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISDISP--LASLPNLIEV  200 (227)
T ss_dssp             TTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEE
T ss_pred             ccccchhhhhchhhhhch-hhhhccccccccccccccccccch-hhcccccceecccCCC-ccCCChh--hcCCCCCCEE
Confidence            778899999998887743 345778899999999999888665 4889999999999994 7788876  8999999999


Q ss_pred             EeecccccccccCCCccCccccccccCCCCCCCEEEEec
Q 047708          239 YMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHI  277 (397)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  277 (397)
                      ++++|.++.             +..++.+++|+.|++++
T Consensus       201 ~Ls~N~lt~-------------i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQISD-------------VSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCCB-------------CGGGTTCTTCCEEEEEE
T ss_pred             ECcCCcCCC-------------CcccccCCCCCEEEeeC
Confidence            999998864             34588999999999975

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=3.5e-15  Score=134.41  Aligned_cols=269  Identities=17%  Similarity=0.127  Sum_probs=131.6

Q ss_pred             CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccC
Q 047708           95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  174 (397)
                      +++|++++++++.+|+.  .++|++|++++|.+..+|.    .+.+|+.|+++++.+..++.-   ...|++|++++|.+
T Consensus        40 l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l  110 (353)
T d1jl5a_          40 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL  110 (353)
T ss_dssp             CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhhh---cccccccccccccc
Confidence            45566666666555542  3456666666666555553    234556666666555444321   12456666666655


Q ss_pred             cCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC--
Q 047708          175 FGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE--  252 (397)
Q Consensus       175 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--  252 (397)
                      ... |.++.+++|++|+++++.+...|...   ..+..+.+..+.. .....  ++.++.++.+.+..|.........  
T Consensus       111 ~~l-p~~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~-~~~~~--l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         111 EKL-PELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL-EELPE--LQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             SSC-CCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC-SSCCC--CTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             ccc-cchhhhccceeecccccccccccccc---ccccchhhccccc-ccccc--ccccccceeccccccccccccccccc
Confidence            332 33455666666666655555444322   2233333333111 11111  344445555555444332211000  


Q ss_pred             -----CccCccccccccCCCCCCCEEEEeccCCCCCCCccc------------------CCCccEEEEEecCcc--cchh
Q 047708          253 -----EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS------------------FQNLTSFSITIGDLA--AGFI  307 (397)
Q Consensus       253 -----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------------~~~L~~L~l~~~~~~--~~~~  307 (397)
                           ..............++.|+.+.++++....++....                  .+.+....+..+...  ....
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~  263 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  263 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 000001122334455666666666655433332211                  112222221111100  0000


Q ss_pred             h------hHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEe
Q 047708          308 S------AAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIF  380 (397)
Q Consensus       308 ~------~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~  380 (397)
                      .      .....+ ..++..+++|+.|++ ++.+..+|.++    ++|+.|+|++ +.+++++     ..+++|++|+++
T Consensus       264 ~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~L~~L~L~~-N~L~~l~-----~~~~~L~~L~L~  332 (353)
T d1jl5a_         264 PNLYYLNASSNEI-RSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASF-NHLAEVP-----ELPQNLKQLHVE  332 (353)
T ss_dssp             TTCCEEECCSSCC-SEECCCCTTCCEEECCSSCCSCCCCCC----TTCCEEECCS-SCCSCCC-----CCCTTCCEEECC
T ss_pred             chhcccccccCcc-ccccccCCCCCEEECCCCccCcccccc----CCCCEEECCC-CcCCccc-----cccCCCCEEECc
Confidence            0      000000 011123578999999 77888888653    6999999987 4677775     245789999999


Q ss_pred             ccCCceEeecC
Q 047708          381 GCNEMKCLLNS  391 (397)
Q Consensus       381 ~c~~L~~i~~~  391 (397)
                      +|+ |+++|+.
T Consensus       333 ~N~-L~~lp~~  342 (353)
T d1jl5a_         333 YNP-LREFPDI  342 (353)
T ss_dssp             SSC-CSSCCCC
T ss_pred             CCc-CCCCCcc
Confidence            997 9998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.5e-15  Score=125.60  Aligned_cols=221  Identities=15%  Similarity=0.096  Sum_probs=102.5

Q ss_pred             EEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCc-cc-hhhhCCCCCCeeecCCCC
Q 047708          143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSE-IP-ISFGRLSHLRLLDLTDCD  219 (397)
Q Consensus       143 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-lp-~~i~~l~~L~~L~l~~~~  219 (397)
                      +++.++..+..+|..+.  .++++|++++|.+...++ .+.++++|++|++++|.+.. ++ ..+..+++++++.+..++
T Consensus        12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            33444444444443321  244555555554433333 34455555555555554432 22 234455555555554444


Q ss_pred             CCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc--CCCccEEE
Q 047708          220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS--FQNLTSFS  296 (397)
Q Consensus       220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~--~~~L~~L~  296 (397)
                      .+...+...+..+++|+++++.+|.+...          .....+..++.+..+...++....++.. +.  ...++.|.
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~----------~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHL----------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSC----------CCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccccccccccccccccccccchhhhccc----------ccccccccccccccccccccccccccccccccccccceeee
Confidence            44444444455556666666655554321          0111122222333333333333333322 11  23455555


Q ss_pred             EEecCcccchhhhHHHHhhhhcccccccccceec--ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCc
Q 047708          297 ITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ--DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNEL  374 (397)
Q Consensus       297 l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l--~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L  374 (397)
                      +..+... .        +....+ ..++++++..  ++.++.+|.+.....++|++|+|++ +.++.++    ...|.+|
T Consensus       160 l~~n~l~-~--------i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~----~~~~~~l  224 (242)
T d1xwdc1         160 LNKNGIQ-E--------IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLP----SYGLENL  224 (242)
T ss_dssp             CCSSCCC-E--------ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCC----SSSCTTC
T ss_pred             ccccccc-c--------cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccC----HHHHcCC
Confidence            5443322 1        111111 1334444433  5566777766543336899999987 5577665    2345666


Q ss_pred             cEEEEeccCCceEeec
Q 047708          375 MFLGIFGCNEMKCLLN  390 (397)
Q Consensus       375 ~~L~i~~c~~L~~i~~  390 (397)
                      ..|..-++..++++|.
T Consensus       225 ~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         225 KKLRARSTYNLKKLPT  240 (242)
T ss_dssp             CEEESSSEESSSCSCC
T ss_pred             cccccCcCCCCCcCCC
Confidence            6665555566666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.50  E-value=1.4e-12  Score=117.06  Aligned_cols=262  Identities=16%  Similarity=0.103  Sum_probs=151.3

Q ss_pred             CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708           80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS  159 (397)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  159 (397)
                      +..+..+|.  ..+++++|++++|+++.+|..  ..+|+.|++.+|.+..++.    -.+.|++|++++|.+..+|. ++
T Consensus        47 ~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~~n~l~~lp~-~~  117 (353)
T d1jl5a_          47 NLGLSSLPE--LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEKLPE-LQ  117 (353)
T ss_dssp             TSCCSCCCS--CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSSCCC-CT
T ss_pred             CCCCCCCCC--CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh----hccccccccccccccccccc-hh
Confidence            344555564  357899999999999998875  4689999999998776653    12469999999999988885 67


Q ss_pred             CcccCcEEEccCccCcCCCc-------------------cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCC
Q 047708          160 FLINLRTLSLHDCRRFGDLP-------------------LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDD  220 (397)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~-------------------~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~  220 (397)
                      .+++|++|+++++.+...+.                   .+..++.++.+++..+.....+...   ...+.+.... ..
T Consensus       118 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~---~~~~~l~~~~-~~  193 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN-NI  193 (353)
T ss_dssp             TCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS-SC
T ss_pred             hhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccc---cccccccccc-cc
Confidence            89999999999887654432                   2333455555555554433322111   1112222222 22


Q ss_pred             CCCCchhhhcCCCCCCEEEeecccccccccCCCcc------CccccccccCCCCCCCEEEEeccC---------------
Q 047708          221 LELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDS------SSNAKFIELGSLSRLTSLHIHIPN---------------  279 (397)
Q Consensus       221 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~~~~~l~~l~~L~~L~l~~~~---------------  279 (397)
                      +..++.  ...++.|+.+++.+|.... ++.....      ..............+....+..+.               
T Consensus       194 ~~~~~~--~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~  270 (353)
T d1jl5a_         194 LEELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN  270 (353)
T ss_dssp             CSSCCC--CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred             cccccc--ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhcccc
Confidence            223332  4456666666666654432 1111000      000000000111222222222211               


Q ss_pred             --CCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceeccc
Q 047708          280 --GKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVD  355 (397)
Q Consensus       280 --~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~  355 (397)
                        ...++.... +++|++|+++.|....         ++.    ..++|+.|++ ++.++.+|..    +.+|++|+|++
T Consensus       271 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~---------lp~----~~~~L~~L~L~~N~L~~l~~~----~~~L~~L~L~~  333 (353)
T d1jl5a_         271 ASSNEIRSLCDLPPSLEELNVSNNKLIE---------LPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEY  333 (353)
T ss_dssp             CCSSCCSEECCCCTTCCEEECCSSCCSC---------CCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCS
T ss_pred             cccCccccccccCCCCCEEECCCCccCc---------ccc----ccCCCCEEECCCCcCCccccc----cCCCCEEECcC
Confidence              111111123 6789999998876431         211    2578999999 7788888742    26899999998


Q ss_pred             CCChhhhhhccccCCCCCccEEEEe
Q 047708          356 VNDLENIVSDLANDGFNELMFLGIF  380 (397)
Q Consensus       356 c~~l~~l~~~~~~~~~~~L~~L~i~  380 (397)
                      |+ ++.+|.     ..++|+.|.+.
T Consensus       334 N~-L~~lp~-----~~~~L~~L~~~  352 (353)
T d1jl5a_         334 NP-LREFPD-----IPESVEDLRMN  352 (353)
T ss_dssp             SC-CSSCCC-----CCTTCCEEECC
T ss_pred             Cc-CCCCCc-----cccccCeeECc
Confidence            65 888761     22467877763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-15  Score=129.72  Aligned_cols=37  Identities=11%  Similarity=-0.023  Sum_probs=17.3

Q ss_pred             CCCCCCEEEEeccC-C-CCCCCccc-CCCccEEEEEecCc
Q 047708          266 SLSRLTSLHIHIPN-G-KIMSSDMS-FQNLTSFSITIGDL  302 (397)
Q Consensus       266 ~l~~L~~L~l~~~~-~-~~~~~~~~-~~~L~~L~l~~~~~  302 (397)
                      .+++|++|++++|. + ......+. +++|++|+++.|..
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~  212 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  212 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCC
Confidence            34555555555443 2 12223333 55555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.1e-13  Score=104.37  Aligned_cols=102  Identities=22%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             cEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCC
Q 047708          142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDL  221 (397)
Q Consensus       142 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~  221 (397)
                      |+|+++++.+..++. ++.+.+|++|++++|.+...++.++.+++|++|++++|.++.+| .++++++|++|++++ +.+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-Ccc
Confidence            345555555554442 45555555555555555444334555555555555555555554 345555555555555 344


Q ss_pred             CCCch-hhhcCCCCCCEEEeeccccc
Q 047708          222 ELIPR-GVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       222 ~~~~~-~~~~~l~~L~~L~l~~~~~~  246 (397)
                      +.++. ..++.+++|++|++++|.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            43332 22445555555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.3e-13  Score=103.93  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=72.0

Q ss_pred             cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCC
Q 047708          118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDV  197 (397)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  197 (397)
                      |.|++++|.+..++.  +..+++|++|++++|.+..+|..++.+++|++|++++|.+.. ++.+..+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cCccccccccCeEECCCCcc
Confidence            355666666555553  466666777777777666666666667777777777766643 34566677777777777766


Q ss_pred             Cccc--hhhhCCCCCCeeecCCCCCCC---CCchhhhcCCCCCCEE
Q 047708          198 SEIP--ISFGRLSHLRLLDLTDCDDLE---LIPRGVLSRLRKLEEL  238 (397)
Q Consensus       198 ~~lp--~~i~~l~~L~~L~l~~~~~~~---~~~~~~~~~l~~L~~L  238 (397)
                      +.+|  ..++.+++|++|++++ +.+.   ..+..+...+|+|+.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~-N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCC-CcCCcCccHHHHHHHHCcCcceE
Confidence            6554  3566677777777776 3332   2233334456666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-14  Score=114.25  Aligned_cols=102  Identities=19%  Similarity=0.148  Sum_probs=40.5

Q ss_pred             CCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCcc-ccCCCCCCEEEc
Q 047708          114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPL-IGELSLLEILDL  192 (397)
Q Consensus       114 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l  192 (397)
                      +.+++.|++++|.+..++. .+..+++|++|++++|.+..++ .+..+++|++|++++|.+...++. +..+++|++|++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            3344444444444433332 2233444444444444443332 233444444444444444333331 233444444444


Q ss_pred             cCCCCCccch--hhhCCCCCCeeecCC
Q 047708          193 SKSDVSEIPI--SFGRLSHLRLLDLTD  217 (397)
Q Consensus       193 ~~~~~~~lp~--~i~~l~~L~~L~l~~  217 (397)
                      ++|.++.++.  .+..+++|++|++++
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccchhhcCC
Confidence            4444443321  233344444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.8e-14  Score=110.25  Aligned_cols=110  Identities=18%  Similarity=0.116  Sum_probs=77.4

Q ss_pred             hcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchh-hhCCCCCCee
Q 047708          135 FQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLL  213 (397)
Q Consensus       135 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L  213 (397)
                      |.++..++.|++++|.+..++..+..+.+|++|++++|.+... +.+..+++|++|++++|.++.+|.. +..+++|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4566778888888888877776666778888888888877543 5677777888888888877777654 3467777777


Q ss_pred             ecCCCCCCCCCch-hhhcCCCCCCEEEeeccccc
Q 047708          214 DLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       214 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  246 (397)
                      ++++ +.+..++. ..+..+++|++|++.+|.+.
T Consensus        93 ~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTN-NSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eecc-ccccccccccccccccccchhhcCCCccc
Confidence            7777 45555543 22566777777777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-14  Score=124.21  Aligned_cols=177  Identities=20%  Similarity=0.219  Sum_probs=79.8

Q ss_pred             CCCccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCCC-CCChhhcCcccCcEEEccCccCcCC--Cc-cccCCCCCC
Q 047708          114 CPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRGF-SLPSSLSFLINLRTLSLHDCRRFGD--LP-LIGELSLLE  188 (397)
Q Consensus       114 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~l~~L~  188 (397)
                      ..+|++|++++|.+. .....++..+++|++|+++++.+. ..+..++.+++|++|++++|.....  .. ....+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            345555555555422 222333455555666666555542 2234455555566666655432211  11 123455566


Q ss_pred             EEEccCC-CCC--ccchhhhC-CCCCCeeecCCCC-CCCCC-chhhhcCCCCCCEEEeecccccccccCCCccCcccccc
Q 047708          189 ILDLSKS-DVS--EIPISFGR-LSHLRLLDLTDCD-DLELI-PRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI  262 (397)
Q Consensus       189 ~L~l~~~-~~~--~lp~~i~~-l~~L~~L~l~~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  262 (397)
                      +|++++| .++  .++..+.. .++|+.|++++|. .++.. -..++.++++|++|++++|.....          ..+.
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd----------~~~~  194 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN----------DCFQ  194 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG----------GGGG
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc----------hhhh
Confidence            6666554 233  22222222 2456666655532 22211 111133455666666655432210          2334


Q ss_pred             ccCCCCCCCEEEEeccC-C-CCCCCccc-CCCccEEEEEec
Q 047708          263 ELGSLSRLTSLHIHIPN-G-KIMSSDMS-FQNLTSFSITIG  300 (397)
Q Consensus       263 ~l~~l~~L~~L~l~~~~-~-~~~~~~~~-~~~L~~L~l~~~  300 (397)
                      .+.++++|++|++++|. + ......++ +++|+.|++.+|
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45555666666665543 2 11222234 556666665544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=8.2e-14  Score=114.12  Aligned_cols=122  Identities=21%  Similarity=0.274  Sum_probs=78.6

Q ss_pred             ceEEccCCCcccCCCcCCCCCccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708           96 TGISLMFNDIHEVPDELECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR  173 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~  173 (397)
                      ++++.++++++.+|..+ .+.++.|++++|.+. .++...|.++++|+.|+++++.+..+ +..+..+++|++|++++|.
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            45666666777766554 256677777777754 35555566777777777777766443 4456666777777777776


Q ss_pred             CcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCC
Q 047708          174 RFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDC  218 (397)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~  218 (397)
                      +...++ .+..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            665555 56667777777777777766654 4556666777776663

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-13  Score=114.57  Aligned_cols=81  Identities=14%  Similarity=0.226  Sum_probs=37.2

Q ss_pred             cCceEEccCCCcccCCCcC--CCCCccEEEccCCCC-cccChhhhcCCCcccEEEcCC-CCCCC-CChhhcCcccCcEEE
Q 047708           94 DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSL-LVIPDRFFQGMKDLKVLDMGG-IRGFS-LPSSLSFLINLRTLS  168 (397)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~-~~~~~-l~~~~~~l~~L~~L~  168 (397)
                      +++.|++++|.+..++...  ++++|++|++++|.+ ..++...|..++.++++.+.. +.+.. .+..+.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555555544321  455555555555542 223333344555555554433 22222 223344455555555


Q ss_pred             ccCccC
Q 047708          169 LHDCRR  174 (397)
Q Consensus       169 l~~~~~  174 (397)
                      ++++.+
T Consensus       110 l~~~~l  115 (242)
T d1xwdc1         110 ISNTGI  115 (242)
T ss_dssp             EESCCC
T ss_pred             cchhhh
Confidence            555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=1.2e-12  Score=106.92  Aligned_cols=125  Identities=20%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC-C-ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708          118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS-L-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK  194 (397)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~  194 (397)
                      ++++.+++.+..+|..+   .+++++|++++|.+.. + +..+.++++|++|++++|.+...++ .+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555555555432   2455556666665532 2 2334555556666665555544444 455555555555555


Q ss_pred             CCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708          195 SDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH  246 (397)
Q Consensus       195 ~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  246 (397)
                      |.++.+|. .+.++++|++|++++ +.++.++++.+..+++|++|++.+|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccccc
Confidence            55555443 345555555555555 4455555544555555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.7e-13  Score=112.40  Aligned_cols=110  Identities=25%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             hcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeee
Q 047708          135 FQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD  214 (397)
Q Consensus       135 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  214 (397)
                      +..+++|++|++++|.+..++ .+..+++|++|++++|.+...++....+++|++|++++|.++.++ .+..+++|++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEE
T ss_pred             HhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            456666666666666665554 366666666666666665443333333455666666666666553 355666666666


Q ss_pred             cCCCCCCCCCch-hhhcCCCCCCEEEeecccccc
Q 047708          215 LTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       215 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      +++ +.++.++. ..++.+++|+.|++++|.+..
T Consensus       122 L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ESE-EECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccc-chhccccccccccCCCccceeecCCCcccc
Confidence            666 44444442 225666666666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=1.5e-13  Score=112.78  Aligned_cols=126  Identities=18%  Similarity=0.202  Sum_probs=100.2

Q ss_pred             cccEEEcCCC--CCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCC
Q 047708          140 DLKVLDMGGI--RGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTD  217 (397)
Q Consensus       140 ~L~~L~l~~~--~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  217 (397)
                      .++.+++.+.  .+..++.++..+++|++|++++|.+.. ++.+..+++|++|++++|.++.+|.....+++|++|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-CCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCC-cccccCCccccChhhccccccccccccccccccccccccc
Confidence            3455566543  346777889999999999999999864 4578899999999999999998887666677899999998


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC
Q 047708          218 CDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN  279 (397)
Q Consensus       218 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  279 (397)
                       +.++.++.  +..+++|++|++++|.+...          ..+..++.+++|+.|++++|.
T Consensus       103 -N~i~~l~~--~~~l~~L~~L~L~~N~i~~~----------~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         103 -NQIASLSG--IEKLVNLRVLYMSNNKITNW----------GEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -EECCCHHH--HHHHHHSSEEEESEEECCCH----------HHHHHHTTTTTCSEEEECSSH
T ss_pred             -cccccccc--ccccccccccccccchhccc----------cccccccCCCccceeecCCCc
Confidence             56777754  78889999999999988641          123467888999999999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=1.3e-10  Score=103.92  Aligned_cols=180  Identities=15%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             cccCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccC----------hhhhcCCCcccEEEcCCCCCCC--
Q 047708           92 FEDLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIP----------DRFFQGMKDLKVLDMGGIRGFS--  153 (397)
Q Consensus        92 ~~~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~----------~~~~~~l~~L~~L~l~~~~~~~--  153 (397)
                      ...++.|++++|.+..     +.... ..+.|+.+.++++......          ...+..+++|+.|++++|.+..  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            4456666666665432     22122 4556666666555422111          1113445666666666665522  


Q ss_pred             ---CChhhcCcccCcEEEccCccCcCCC--------c------cccCCCCCCEEEccCCCCC-----ccchhhhCCCCCC
Q 047708          154 ---LPSSLSFLINLRTLSLHDCRRFGDL--------P------LIGELSLLEILDLSKSDVS-----EIPISFGRLSHLR  211 (397)
Q Consensus       154 ---l~~~~~~l~~L~~L~l~~~~~~~~~--------~------~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~  211 (397)
                         +...+...++|++|++++|.+....        .      .....+.|+.+.++++.+.     .+...+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               2223344556666666665442110        0      0123455666666655544     2233444555666


Q ss_pred             eeecCCCCCCCCC-----chhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC
Q 047708          212 LLDLTDCDDLELI-----PRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN  279 (397)
Q Consensus       212 ~L~l~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  279 (397)
                      .|++++| .++..     ....+..+++|++|++++|.+...       ....+...+..+++|++|++++|.
T Consensus       190 ~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~-------g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         190 TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             ccccccc-cccccccccchhhhhcchhhhccccccccccccc-------ccccccccccccccchhhhhhcCc
Confidence            6666553 22211     111134455666666665554320       001223344555566666666555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.6e-10  Score=86.81  Aligned_cols=108  Identities=14%  Similarity=0.053  Sum_probs=81.0

Q ss_pred             CCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccc
Q 047708          184 LSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE  263 (397)
Q Consensus       184 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  263 (397)
                      +.....++..++.+...|..+..+++|+.|++.+++.++.++...|..+++|+.|++++|.+..           .....
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-----------i~~~~   75 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-----------VAPDA   75 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-----------ECTTG
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-----------ccccc
Confidence            3344567777777777777777888888888877667787877768888888888888888765           22455


Q ss_pred             cCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCc
Q 047708          264 LGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDL  302 (397)
Q Consensus       264 l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~  302 (397)
                      +..+++|++|++++|++..+|.... ..+|+.|++++|+.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccccccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            7778888888888888888877654 55788888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.2e-12  Score=115.58  Aligned_cols=84  Identities=21%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             ccccCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccC-----hhhhcCCCcccEEEcCCCCCCC-----C
Q 047708           91 KFEDLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIP-----DRFFQGMKDLKVLDMGGIRGFS-----L  154 (397)
Q Consensus        91 ~~~~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~-----l  154 (397)
                      .++++++|++.+|.++.     +...+ .++.|+.|++++|.+++..     ..+.....+|++|++++|.+..     +
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            46778888888887663     22333 6778888888888754322     1111223468888888887743     3


Q ss_pred             ChhhcCcccCcEEEccCccC
Q 047708          155 PSSLSFLINLRTLSLHDCRR  174 (397)
Q Consensus       155 ~~~~~~l~~L~~L~l~~~~~  174 (397)
                      +..+..+++|++|++++|.+
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBC
T ss_pred             cchhhccccccccccccccc
Confidence            44566778888888887764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.4e-09  Score=83.50  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=67.7

Q ss_pred             ceEEccCCCcccCCCcC-CCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCc
Q 047708           96 TGISLMFNDIHEVPDEL-ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDC  172 (397)
Q Consensus        96 ~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~  172 (397)
                      ..++...+.+..+|..+ .+++|+.|++.++. +..++...|.++++|+.|++++|.+..+ +..+..+++|++|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            44666666666665555 66777777776554 7777766677777777777777777665 445666777777777777


Q ss_pred             cCcCCCccccCCCCCCEEEccCCCCC
Q 047708          173 RRFGDLPLIGELSLLEILDLSKSDVS  198 (397)
Q Consensus       173 ~~~~~~~~~~~l~~L~~L~l~~~~~~  198 (397)
                      .+...++.+....+|++|++++|.+.
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCcccChhhhccccccccccCCCccc
Confidence            77655554334445777777766654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.96  E-value=3.8e-10  Score=100.67  Aligned_cols=184  Identities=16%  Similarity=0.094  Sum_probs=105.4

Q ss_pred             CCCCccEEEccCCCCcccC----hhhhcCCCcccEEEcCCCCCCCC-----------ChhhcCcccCcEEEccCccCcCC
Q 047708          113 ECPKLQALLLQENSLLVIP----DRFFQGMKDLKVLDMGGIRGFSL-----------PSSLSFLINLRTLSLHDCRRFGD  177 (397)
Q Consensus       113 ~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~l-----------~~~~~~l~~L~~L~l~~~~~~~~  177 (397)
                      ....++.|++++|.+....    ...+...++|+.++++++.....           ...+...++|+.|++++|.+...
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            5678888888888743321    12245678888888887654322           12244567788888888776443


Q ss_pred             C-----ccccCCCCCCEEEccCCCCCc-----cch---------hhhCCCCCCeeecCCCCCCCCCch----hhhcCCCC
Q 047708          178 L-----PLIGELSLLEILDLSKSDVSE-----IPI---------SFGRLSHLRLLDLTDCDDLELIPR----GVLSRLRK  234 (397)
Q Consensus       178 ~-----~~~~~l~~L~~L~l~~~~~~~-----lp~---------~i~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~  234 (397)
                      .     ..+...++|++|++++|.+..     +..         .....+.|+.+.+++ +.++.-..    ..+...+.
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHHHHHCTT
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc-ccccccccccccchhhhhhh
Confidence            1     134456778888888776541     111         123456677777776 33332111    11455677


Q ss_pred             CCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCC-----CCCccc-CCCccEEEEEecCcc
Q 047708          235 LEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKI-----MSSDMS-FQNLTSFSITIGDLA  303 (397)
Q Consensus       235 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~~  303 (397)
                      |++|++.+|.+...-      ........+..+++|+.|++++|.++.     +...+. +++|++|++++|...
T Consensus       188 L~~L~L~~n~i~~~g------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEG------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CCEEECCSSCCCHHH------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcccccccccccccc------cccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            777777777654310      000122345566777777777776322     223344 677777777766543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-10  Score=107.46  Aligned_cols=105  Identities=17%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             cCceEEccCCCccc--CCCcC-CCCCccEEEccCCCCcccC----hhhhcCCCcccEEEcCCCCCCC-----CChhhcC-
Q 047708           94 DLTGISLMFNDIHE--VPDEL-ECPKLQALLLQENSLLVIP----DRFFQGMKDLKVLDMGGIRGFS-----LPSSLSF-  160 (397)
Q Consensus        94 ~l~~l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~-  160 (397)
                      +|+.|+++++++++  +.... .++++++|++.+|.+.+..    ...+..+++|++|++++|.+..     +...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            57899999999876  33333 6789999999999855322    2335789999999999998732     2222222 


Q ss_pred             cccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCC
Q 047708          161 LINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVS  198 (397)
Q Consensus       161 l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~  198 (397)
                      ..+|++|++++|.+....     ..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            357999999999875432     25678999999999988764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=8.1e-07  Score=69.24  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             CCCCCCEEEccCCCCCcc---chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708          183 ELSLLEILDLSKSDVSEI---PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW  247 (397)
Q Consensus       183 ~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  247 (397)
                      .+++|++|++++|.++.+   +..+..+++|+.|++++ +.++.++.-......+|++|++.+|.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCc
Confidence            456666666666655543   23455566666666666 55555544222334456666666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=9.4e-06  Score=62.96  Aligned_cols=83  Identities=22%  Similarity=0.095  Sum_probs=57.2

Q ss_pred             hhhcCCCcccEEEcCCCCCCCCC---hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccc-------
Q 047708          133 RFFQGMKDLKVLDMGGIRGFSLP---SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIP-------  201 (397)
Q Consensus       133 ~~~~~l~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp-------  201 (397)
                      .++..+++|++|++++|.+..++   ..+..+++|++|++++|.+....+ ......+|+.|++.+|.+....       
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            34567888888888888886553   345678888888888888765544 3334456888888888776322       


Q ss_pred             -hhhhCCCCCCeeec
Q 047708          202 -ISFGRLSHLRLLDL  215 (397)
Q Consensus       202 -~~i~~l~~L~~L~l  215 (397)
                       ..+..+++|++||-
T Consensus       139 ~~i~~~~P~L~~LDg  153 (162)
T d1koha1         139 SAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHTTSTTCCEETT
T ss_pred             HHHHHHCCCCCEECc
Confidence             23567888888863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.15  E-value=0.00035  Score=53.97  Aligned_cols=34  Identities=9%  Similarity=0.042  Sum_probs=16.0

Q ss_pred             CCCCCEEEccCCCCC-----ccchhhhCCCCCCeeecCC
Q 047708          184 LSLLEILDLSKSDVS-----EIPISFGRLSHLRLLDLTD  217 (397)
Q Consensus       184 l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~  217 (397)
                      .+.|++|++++|.+.     .+-..+...+.|++|++++
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC
Confidence            344555555555444     1223344445555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.04  E-value=0.00052  Score=52.97  Aligned_cols=61  Identities=10%  Similarity=-0.015  Sum_probs=29.2

Q ss_pred             cCCCcccEEEcCCCCCC-----CCChhhcCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCC
Q 047708          136 QGMKDLKVLDMGGIRGF-----SLPSSLSFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSD  196 (397)
Q Consensus       136 ~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~  196 (397)
                      ...++|++|++++|.+.     .+...+...+.|++|++++|.+....     ..+...+.|++|+++++.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            44555566666555542     12223334455555566555543211     134444555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.58  E-value=0.00058  Score=52.65  Aligned_cols=81  Identities=14%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             cCCCcccEEEcCCC-CCC-----CCChhhcCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCC-----c
Q 047708          136 QGMKDLKVLDMGGI-RGF-----SLPSSLSFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVS-----E  199 (397)
Q Consensus       136 ~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~-----~  199 (397)
                      .+.+.|++|+++++ .++     .+...+...++|++|++++|.+....     ..+...+.++.++++++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44555555555542 221     12223334455555555555442210     12333455555555555443     2


Q ss_pred             cchhhhCCCCCCeeecC
Q 047708          200 IPISFGRLSHLRLLDLT  216 (397)
Q Consensus       200 lp~~i~~l~~L~~L~l~  216 (397)
                      +...+...++|+.+++.
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            22344455555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.81  E-value=0.0042  Score=47.51  Aligned_cols=105  Identities=16%  Similarity=0.150  Sum_probs=64.6

Q ss_pred             CCCCccEEEccCCC-CcccC----hhhhcCCCcccEEEcCCCCCC-----CCChhhcCcccCcEEEccCccCcCC-----
Q 047708          113 ECPKLQALLLQENS-LLVIP----DRFFQGMKDLKVLDMGGIRGF-----SLPSSLSFLINLRTLSLHDCRRFGD-----  177 (397)
Q Consensus       113 ~~~~L~~L~l~~~~-~~~~~----~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~-----  177 (397)
                      +.+.|+.|+++++. +..-.    ...+...++|++|++++|.+.     .+...+....+++.+++++|.+...     
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            34667777776633 32211    122457788888888888763     2333455667888888888776432     


Q ss_pred             CccccCCCCCCEEEccC--CCCC-----ccchhhhCCCCCCeeecCC
Q 047708          178 LPLIGELSLLEILDLSK--SDVS-----EIPISFGRLSHLRLLDLTD  217 (397)
Q Consensus       178 ~~~~~~l~~L~~L~l~~--~~~~-----~lp~~i~~l~~L~~L~l~~  217 (397)
                      ...+...++|+.+++..  +.+.     .+...+...+.|++|+++.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            12566778888776653  3454     2445566677777777755