Citrus Sinensis ID: 047710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MEITYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKKSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAPSDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWSTVMQDIGGGGGVVGGGGRLNVGPTELDCMWTY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEEEcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHccccccEEEEEccccccccccccccHHcccccEEEccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccHccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meitynyfdnsdahlppgfrfhptdEELITYYLLKKVLDCNFTGRAIAevdlnkcepwelpakakmgekewYFFSlrdrkyptglrtnrateagywkatgkdreiyssKTCALVGMKKTLVFyrgrapkgeksnWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKKSRlsctisssstfnhsypepsspssvslpplldhptiaaaanattapndscsydeshapsdqhvsCFSTIAAAAAAAAASAATattfntsssafdfttvpapvinadagagaacdpfarfgrnnvglnafpnLRSLqenlqlpfffappassvapppfqgggggsnwSTVMQDigggggvvggggrlnvgpteldcmwty
Flexible Loop (DISEMBL)
MEITYNYFdnsdahlppgFRFHPTDEELITYYLLKKVLDCNFTGRAIAevdlnkcepwelpakakmgekeWYFFSLRdrkyptglrtnrateagywkatgkdreiyssktcalvgmkKTLVFYrgrapkgeksnwvMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKKSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAPSDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWSTVMQDIGGGGgvvggggrlnvgpteldcmwty
Low Complexity Region (SEG)
MEITYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGaiataaavanaVKKsrlsctisssstfnhsypepsspssvslpplldhptiaaaanattaPNDSCSYDESHAPSDQHVSCfstiaaaaaaaaasaatattfntsssafdfttVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLpfffappassvapppfQGGGGGSNWSTVMQDIgggggvvggggRLNVGPTELDCMWTY
Disordered region (IsUnstruct)
***TYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVK****************************************************************VSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFA*****************************************************
Disordered Region (DISOPRED)
****************PGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRL****************WVISRVFQ******************************************************************************************************************************************************************************************************************ELDCMWTY
Disordered Region (DISEMBL)
MEITYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKKSRLSC**********************LPPLLDHPTIAAAANA*******************HVSCFSTIAA*************TFNTSSSAFDFTTVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWSTVMQDIGGGGGVVGGGGRLNVGPTELDCMWTY
Disordered Region (DISPRO)
*************HLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFA***LSRSSKDEWVISRVFQKSS************************************************H*TIAA*A*****************************************TATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFA**********************************************LDC*WTY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEITYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKKSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAPSDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWSTVMQDIGGGGGVVGGGGRLNVGPTELDCMWTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
O04017	375	Protein CUP-SHAPED COTYLE	yes	no	0.903	0.925	0.507	1e-97
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.408	0.506	0.808	1e-73
Q9FLJ2	336	NAC domain-containing pro	no	no	0.419	0.479	0.760	2e-71
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.614	0.706	0.508	2e-62
Q5CD17	396	NAC domain-containing pro	no	no	0.406	0.393	0.627	8e-60
Q84TE6	324	NAC domain-containing pro	no	no	0.557	0.660	0.467	3e-53
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.403	0.454	0.574	4e-48
Q9FWX2	395	NAC domain-containing pro	no	no	0.408	0.397	0.548	4e-48
Q84WP6	365	NAC domain-containing pro	no	no	0.682	0.717	0.377	5e-47
D2SMN4	406	NAC transcription factor	N/A	no	0.466	0.440	0.502	5e-47

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  356 bits (914), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/412 (50%), Positives = 251/412 (60%), Gaps = 65/412 (15%)

Query: 1   MEITYNYFDN--SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPW 58
           M+I Y ++D+     +LPPGFRFHPTDEELIT+YLL+KVLD  F+ RAIAEVDLNKCEPW
Sbjct: 1   MDIPYYHYDHGGDSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPW 60

Query: 59  ELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKK 118
           +LP +AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREI+SSKTCALVGMKK
Sbjct: 61  QLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKK 120

Query: 119 TLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAV 178
           TLVFY+GRAPKGEKSNWVMHEYRLEGKF+Y ++SRSSKDEWVISRVFQK++  +A+  AV
Sbjct: 121 TLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTT--LASTGAV 178

Query: 179 ANAVKKSRLSCTISSS----------STFNHSYPEPSSPSSVSLPPLLDHPTIAAAANAT 228
           +        + ++SS           ST + +Y E  S  S    P L  PT        
Sbjct: 179 SEGGGGGGATVSVSSGTGPSKKTKVPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYT-- 236

Query: 229 TAPNDSCSYDESHAPS-------DQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFT 281
              + SCSYD     +        +HVSCFST+     A      +            F+
Sbjct: 237 ---DSSCSYDSRSTNTTVTASAITEHVSCFSTVPTTTTALGLDVNS------------FS 281

Query: 282 TVPAPVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENL-QLPFF----FAPPASS 336
            +P P+       G   DPF RF   NV   +  N RS QEN  Q P+F     +   S+
Sbjct: 282 RLPPPL-------GFDFDPFPRFVSRNVSTQS--NFRSFQENFNQFPYFGSSSASTMTSA 332

Query: 337 VAPPPFQGGGG--GSNW--STVMQDIGGGGGVVGGGGRLNVGPTELDCMWTY 384
           V  P FQGGGG  G N+      ++     GV+  G         LDC+W Y
Sbjct: 333 VNLPSFQGGGGVSGMNYWLPATAEENESKVGVLHAG---------LDCIWNY 375

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 143/157 (91%)

Query: 12  DAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEW 71
           ++ +PPGFRFHPTDEELITYYLLKKVLD NF+  AI++VDLNK EPWELP KAKMGEKEW
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEW 76

Query: 72  YFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGE 131
           YFF+LRDRKYPTGLRTNRATEAGYWKATGKDREI SSKT +L+GMKKTLVFY+GRAPKGE
Sbjct: 77  YFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGE 136

Query: 132 KSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKS 168
           KS WVMHEYRL+GKF+Y Y+S S+KDEWV+ +V  KS
Sbjct: 137 KSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKS 173

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 140/163 (85%), Gaps = 2/163 (1%)

Query: 9   DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGE 68
           +     LPPGFRFHPTDEELIT+YL KKVLD +F+ +AI EVDLNK EPWELP  AKMGE
Sbjct: 10  EEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGE 69

Query: 69  KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAP 128
           KEWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EIY  K  +LVGMKKTLVFYRGRAP
Sbjct: 70  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGK--SLVGMKKTLVFYRGRAP 127

Query: 129 KGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGA 171
           KG+K+NWVMHEYRLEGKF+   L +++K+EWVI RVFQKS+G 
Sbjct: 128 KGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGG 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/244 (50%), Positives = 157/244 (64%), Gaps = 8/244 (3%)

Query: 15  LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
           LPPGFRFHPTDEELIT+YL  K+     +G  I+EVDLN+CEPWELP  AKMGE+EWYF+
Sbjct: 22  LPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMGEREWYFY 81

Query: 75  SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSN 134
           SLRDRKYPTGLRTNRAT AGYWKATGKD+E++S     LVGMKKTLVFY+GRAP+G K+ 
Sbjct: 82  SLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGLKTK 141

Query: 135 WVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKKSRLSCTISSS 194
           WVMHEYRLE   ++++   + K+EWVI RVF K +G       + N +         ++ 
Sbjct: 142 WVMHEYRLENDHSHRH---TCKEEWVICRVFNK-TGDRKNVGLIHNQISYLHNHSLSTTH 197

Query: 195 STFNHSYP---EPSSPSSVSLPPLL-DHPTIAAAANATTAPNDSCSYDESHAPSDQHVSC 250
              + + P   EPS+ +  + P LL D P      N     +   + DE  A  +  VS 
Sbjct: 198 HHHHEALPLLIEPSNKTLTNFPSLLYDDPHQNYNNNNFLHGSSGHNIDELKALINPVVSQ 257

Query: 251 FSTI 254
            + I
Sbjct: 258 LNGI 261

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  231 bits (589), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 126/172 (73%), Gaps = 16/172 (9%)

Query: 15  LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
           LPPGFRFHPTD E+I  YLL+K+L+ +FT   I EVDLNKCEPW+LP+KAKMGEKEWYFF
Sbjct: 19  LPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGEKEWYFF 78

Query: 75  SLRDRKYPTGLRTNRATEAGYWKATGKDREIY--------------SSKTCALVGMKKTL 120
           S +D KYPTG+RTNRAT+ GYWKATGKDREI+              S+K   LVGMKKTL
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTL 138

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGKFAYQY--LSRSSKDEWVISRVFQKSSG 170
           VFY GRAPKG K+NWVMHE+RL       +  L  + KDEWV+ +VF K  G
Sbjct: 139 VFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHKKQG 190

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 153/246 (62%), Gaps = 32/246 (13%)

Query: 12  DAHLPPGFRFHPTDEELITYYLLKKVLDCNFTG-RAIAEVDLNKCEPWELPAKAKMGEKE 70
           +A LPPGFRFHP D+EL+  YL+++ L  N      + +VDLNKCEPW++P  A +G K+
Sbjct: 16  EAKLPPGFRFHPKDDELVCDYLMRRSLHNNHRPPLVLIQVDLNKCEPWDIPKMACVGGKD 75

Query: 71  WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKG 130
           WYF+S RDRKY TGLRTNRAT  GYWKATGKDR I   +   LVGM+KTLVFY+GRAP+G
Sbjct: 76  WYFYSQRDRKYATGLRTNRATATGYWKATGKDRTIL--RKGKLVGMRKTLVFYQGRAPRG 133

Query: 131 EKSNWVMHEYRLEGKFAYQYLSRSS-KDEWVISRVFQKSSGAIATAAAVANAVKKSRLSC 189
            K++WVMHE+RL+G       S SS K++WV+ RVF K++  +                C
Sbjct: 134 RKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEGVI---------------C 178

Query: 190 TISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAPSDQHVS 249
             +  S F+ +       +S SLPPL+D P I    N    P+   S D+ H   ++HV 
Sbjct: 179 RDNMGSCFDET-------ASASLPPLMD-PYI----NFDQEPSSYLS-DDHHYIINEHVP 225

Query: 250 CFSTIA 255
           CFS ++
Sbjct: 226 CFSNLS 231

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  192 bits (488), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 117/162 (72%), Gaps = 7/162 (4%)

Query: 11  SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMG--- 67
           S+  +PPGFRFHPTDEEL+ YYL KK+    F    I EVDLNK EPW+L  + K+G   
Sbjct: 5   SNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTP 64

Query: 68  EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRA 127
           + EWYFFS +DRKYPTG RTNRAT AG+WKATG+D+ I +S     +GM+KTLVFY+GRA
Sbjct: 65  QNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNS--YKKIGMRKTLVFYKGRA 122

Query: 128 PKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS 169
           P G+K++W+MHEYRLE     Q  +  S+D WV+ RVF K +
Sbjct: 123 PHGQKTDWIMHEYRLEDADDPQ--ANPSEDGWVVCRVFMKKN 162

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 117/166 (70%), Gaps = 9/166 (5%)

Query: 10  NSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEK 69
           NS +H+PPGFRFHPTDEEL+ YYL KKV         I ++DL K EPW+L    K+G +
Sbjct: 2   NSFSHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHE 61

Query: 70  E---WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGR 126
           E   WYFFS +D+KYPTG RTNRAT+AG+WKATG+D+ IY   +  L+GM+KTLVFY+GR
Sbjct: 62  EQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHS--LIGMRKTLVFYKGR 119

Query: 127 APKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAI 172
           AP G+KS+W+MHEYRLE            ++ WV+ RVF+K   A+
Sbjct: 120 APNGQKSDWIMHEYRLETDEN----GTPQEEGWVVCRVFKKRLAAV 161

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 156/289 (53%), Gaps = 27/289 (9%)

Query: 10  NSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMG-- 67
           N  + +PPGFRFHPT+EEL+ YYL KKV         I +VDLNK EPW++    K+G  
Sbjct: 11  NGQSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTT 70

Query: 68  -EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGR 126
            + +WYFFS +D+KYPTG RTNRAT AG+WKATG+D+ IYS+     +GM+KTLVFY+GR
Sbjct: 71  PQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNG--RRIGMRKTLVFYKGR 128

Query: 127 APKGEKSNWVMHEYRLEGKF----------AYQYLSRSSKDE-WVISRVFQKSSGAIATA 175
           AP G+KS+W+MHEYRL+                 +  +S+DE WV+ R+F+K +      
Sbjct: 129 APHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKKNLHKTLN 188

Query: 176 AAVANA-VKKSRLSCTISSSSTFNHSYPEP-------SSPSSVSLPPLLDHPTIAAAANA 227
           + V  A +     +   +SS  FN    +        S    ++L P +  P + +  + 
Sbjct: 189 SPVGGASLSGGGDTPKTTSSQIFNEDTLDQFLELMGRSCKEELNLDPFMKLPNLESPNSQ 248

Query: 228 TTAPNDSCSYDESHAPSDQHVSCFSTIAAAAAAAAASAATATTFNTSSS 276
                   S D +H   + HVS     +   + AA     A+  N  +S
Sbjct: 249 AINNCHVSSPDTNH---NIHVSNVVDTSFVTSWAALDRLVASQLNGPTS 294

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/199 (50%), Positives = 123/199 (61%), Gaps = 20/199 (10%)

Query: 15  LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
           LPPGFRFHPTDEEL+ +YL KK          IAEVDL K +PWELP KA  GE EWYFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 75  SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKT-CAL--VGMKKTLVFYRGRAPKGE 131
           S RDRKYP G R NRA  +GYWKATG D+ I +S T C    VG+KK LVFYRG+ P+G 
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 132 KSNWVMHEYRLEGKFAYQYL----------SRSSK----DEWVISRVFQKSSGAIATAAA 177
           K+NW+MHEYRL G  A              SR+      D+WV+ R+++K+S A   AAA
Sbjct: 155 KTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKA---AAA 211

Query: 178 VANAVKKSRLSCTISSSST 196
           V +  +      ++  + T
Sbjct: 212 VGDEQRSMECEDSVEDAVT 230

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
356546856	352	PREDICTED: protein CUP-SHAPED COTYLEDON	0.901	0.982	0.618	1e-121
430804038	371	FUL1 [Lotus japonicus]	0.908	0.940	0.616	1e-119
356542298	343	PREDICTED: protein CUP-SHAPED COTYLEDON	0.890	0.997	0.621	1e-119
224128063	323	NAC domain protein, IPR003441 [Populus t	0.820	0.975	0.665	1e-114
219394461	375	NO APICAL MERISTEM1 [Pisum sativum]	0.950	0.973	0.626	1e-114
219394463	376	NO APICAL MERISTEM2 [Pisum sativum]	0.908	0.928	0.611	1e-113
255581025	350	transcription factor, putative [Ricinus	0.901	0.988	0.679	1e-113
356545472	366	PREDICTED: protein CUP-SHAPED COTYLEDON	0.888	0.931	0.591	1e-112
219394451	362	NO APICAL MERISTEM [Aquilegia coerulea]	0.914	0.969	0.582	1e-111
225461532	363	PREDICTED: protein CUP-SHAPED COTYLEDON	0.908	0.961	0.647	1e-110

>gi|356546856|ref|XP_003541838.1| PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Glycine max]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/383 (61%), Positives = 272/383 (71%), Gaps = 37/383 (9%)

Query: 4   TYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAK 63
           +Y++ D+++AHLPPGFRFHPTDEELITYYLLKKVLD  FTGRAIAEVDLNK EPWELP K
Sbjct: 5   SYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEK 64

Query: 64  AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFY 123
           AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTC+LVGMKKTLVFY
Sbjct: 65  AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFY 124

Query: 124 RGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVK 183
           RGRAPKGEKSNWVMHEYRLEGKFAY YLSR+SKDEWVISRVFQKS+ A     +V +A  
Sbjct: 125 RGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTATNNGGSVMSASS 184

Query: 184 KSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAP 243
            S+ +   S++S  +    EPSSPSSV LPPLLD       AN T   N   SYD     
Sbjct: 185 NSKKTRMNSTTSLIH----EPSSPSSVFLPPLLDTSPYTNTANFTDRHN--GSYDS--IT 236

Query: 244 SDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFAR 303
             +HVSCFSTIAAA  A  +        N +++ FD +  P+  +        A DPFAR
Sbjct: 237 KKEHVSCFSTIAAATTAVVSPN------NFNNAGFDLS--PSQPL--------ATDPFAR 280

Query: 304 FGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGS--NWSTVMQDIGGG 361
           F R NV  +AFP+LRSLQ+NLQ PF F     S A PPF GGG G   +W    +     
Sbjct: 281 FQR-NVDFSAFPSLRSLQDNLQFPFVF-----STAAPPFSGGGSGDFLSWPVPEEQ---- 330

Query: 362 GGVVGGGGRLNVGPTELDCMWTY 384
             ++ G   + +G +ELDCMW+Y
Sbjct: 331 -RLIDGVSNMPLGVSELDCMWSY 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|430804038|gb|AGA83303.1| FUL1 [Lotus japonicus]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/381 (61%), Positives = 263/381 (69%), Gaps = 32/381 (8%)

Query: 9   DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGE 68
           +N+DA LPPGFRFHPTDEELITYYLLKKVLD NFTG+AI EVDLNKCEPWELP KAKMGE
Sbjct: 18  NNTDASLPPGFRFHPTDEELITYYLLKKVLDSNFTGKAIVEVDLNKCEPWELPGKAKMGE 77

Query: 69  KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAP 128
           KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTC+LVGMKKTLVFYRGRAP
Sbjct: 78  KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAP 137

Query: 129 KGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKS---SGAIATAAAVANAVKKS 185
           KGEKSNWVMHEYRLEGKFAY YLSRSSKDEWVISRVFQK+   SG  A + A   + K  
Sbjct: 138 KGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNTVGSGGAAVSGASGGSKKGM 197

Query: 186 RLSCTISSSSTFNHSYPEPSSP--SSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAP 243
           R S   SSS +   S  EP SP  SS+ LPPL++     A ++A T+       D   + 
Sbjct: 198 RASTGGSSSMSLCGSAYEPGSPASSSIYLPPLMESSPYTATSSAATSAALFKDGDSFDSV 257

Query: 244 SDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFAR 303
             +HVSCFSTI  AA             N S S   F   P            A DPF+R
Sbjct: 258 KREHVSCFSTINNAAGN-----------NNSFSGGGFDLAP-----------LAVDPFSR 295

Query: 304 FGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWSTVMQDIGGGGG 363
           F RN VG++AFP+LRSLQENLQ+PFFF+PPA+        G G   NW  + + +     
Sbjct: 296 FQRNVVGVSAFPSLRSLQENLQMPFFFSPPAAQPMNADVAGCGNVGNWPVMEEHV----- 350

Query: 364 VVGGGGRLNVGPTELDCMWTY 384
           V  GG  + VG +ELDCMW Y
Sbjct: 351 VSDGGSGMPVGASELDCMWGY 371

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542298|ref|XP_003539606.1| PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Glycine max]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/378 (62%), Positives = 266/378 (70%), Gaps = 36/378 (9%)

Query: 8   FDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMG 67
            D+++AHLPPGFRFHPTDEELITYYLLKKVLD  FTGRAIAEVDLNK EPWELP KAKMG
Sbjct: 1   MDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMG 60

Query: 68  EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRA 127
           EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTC+LVGMKKTLVFYRGRA
Sbjct: 61  EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRA 120

Query: 128 PKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKKSRL 187
           PKGEKSNWVMHEYRLEGKFAY YLSR+S+DEWVISRVF+KS+    T      +   +  
Sbjct: 121 PKGEKSNWVMHEYRLEGKFAYHYLSRNSEDEWVISRVFRKSNTTPITNGGSTMSASTNSK 180

Query: 188 SCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAPSDQH 247
              I+++++  H   EP SPSSV LPPLLD          T   + + SYD   A   +H
Sbjct: 181 KTRINNTTSLIH---EPGSPSSVFLPPLLDSSPYTNTTTNTFTDHHNSSYDS--ATKKEH 235

Query: 248 VSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFARFGRN 307
           VSCFSTIAAA A  + +      FN +S    F   P+  +        A DPFARF R 
Sbjct: 236 VSCFSTIAAATAVVSPN----NNFNNAS----FDLPPSQPL--------ATDPFARFQR- 278

Query: 308 NVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWS-TVMQDIGGGGGVVG 366
           NVGL+AFP+LRSLQ+NLQLPFFF    S+ A PPF GGG G   S  V +D         
Sbjct: 279 NVGLSAFPSLRSLQDNLQLPFFF----STAAAPPFSGGGSGDFLSWPVPED--------- 325

Query: 367 GGGRLNVGPTELDCMWTY 384
           G   + +G +ELDCMW Y
Sbjct: 326 GVSNMPLGVSELDCMWGY 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128063|ref|XP_002329072.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222869741|gb|EEF06872.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/350 (66%), Positives = 254/350 (72%), Gaps = 35/350 (10%)

Query: 4   TYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAK 63
           +Y++F + D HLPPGFRFHPTDEELITYYLLKKVLD NFTGRAIAEVDLNKCEPWELP K
Sbjct: 3   SYHHFGDGDTHLPPGFRFHPTDEELITYYLLKKVLDRNFTGRAIAEVDLNKCEPWELPGK 62

Query: 64  AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFY 123
           AKM EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREI+SSKT ALVGMKKTLVFY
Sbjct: 63  AKMVEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIHSSKTGALVGMKKTLVFY 122

Query: 124 RGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVK 183
           RGRAP+G KSNWVMHEYRLEGKFAY YLS  SKDEWVISRVFQKS G    AA+  N  K
Sbjct: 123 RGRAPEGGKSNWVMHEYRLEGKFAYHYLSGCSKDEWVISRVFQKSCG--GAAASSGNITK 180

Query: 184 KSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAP 243
           K+R   TI+        Y E +SPSSVSLPPLLD          T    DSCSYD +H  
Sbjct: 181 KNRFDTTIN-------LYTEANSPSSVSLPPLLD--ATTTITTTTLNDRDSCSYD-NHT- 229

Query: 244 SDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFAR 303
             +HVSCFSTIAAAA AAA +             FD   +P P +          DPF+ 
Sbjct: 230 QHEHVSCFSTIAAAAYAAANNNI----------NFDIAQLPPPPMT---------DPFST 270

Query: 304 FGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGS--NW 351
           F   N G+N FP+LRS+QENLQLPF FA PAS+VA PPF GGG  +  NW
Sbjct: 271 FP-GNTGVNCFPSLRSIQENLQLPFLFASPASAVAVPPFHGGGAATTMNW 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219394461|gb|ACL14372.1| NO APICAL MERISTEM1 [Pisum sativum]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/394 (62%), Positives = 278/394 (70%), Gaps = 29/394 (7%)

Query: 1   MEITYNYFDN-SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWE 59
           ME  Y++ +N SDAHLPPGFRFHPTDEELIT+YLLKKVLD  FT RAIAEVDLNKCEPWE
Sbjct: 1   MEGFYHHMNNNSDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWE 60

Query: 60  LPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKT 119
           LP KAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKT +LVGMKKT
Sbjct: 61  LPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKT 120

Query: 120 LVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS--GAIATAAA 177
           LVFYRGRAPKGEKSNWVMHEYRLEGKFAY +LSR+SKDEWVISRVFQKS+      T  A
Sbjct: 121 LVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGSTTVTA 180

Query: 178 VANAVKKSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLD-HPTIAAAANATTAPN--DS 234
            A+  KK++L  T S+S+       EPSSPSSV LPPLLD  P    AA +TTA N    
Sbjct: 181 TASGSKKTKLVSTTSASNNSMSLCAEPSSPSSVYLPPLLDSSPYSNNAAASTTAFNGGQM 240

Query: 235 CSYDESHAPSD--QHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADA 292
           CSY+ S   +D  +HVSCFST +  +   +     +   N S        VP P +NA  
Sbjct: 241 CSYNNSSNNTDLKEHVSCFSTSSTTSNVVSGHNNFSNNNNGSFD-----LVP-PSMNA-- 292

Query: 293 GAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWS 352
              A  DPFARF R NVG++AFP+LRSLQ+NLQLPFFF    S+ A  PF GG     W 
Sbjct: 293 ---ATMDPFARFQR-NVGVSAFPSLRSLQDNLQLPFFF----STAAAQPFHGGDVLGGWG 344

Query: 353 TVMQDIGGGGGVVG--GGGRLNVGPTELDCMWTY 384
              ++     GVV   G     +G +ELDCMW Y
Sbjct: 345 MPQEE---QRGVVDGGGHNMGGLGSSELDCMWNY 375

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219394463|gb|ACL14373.1| NO APICAL MERISTEM2 [Pisum sativum]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/394 (61%), Positives = 273/394 (69%), Gaps = 45/394 (11%)

Query: 9   DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGE 68
           +NSD HLPPGFRFHPTDEELIT+YLLKKVLD  FT RAIAEVDLNKCEPWELP KAKMGE
Sbjct: 10  NNSDVHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGE 69

Query: 69  KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAP 128
           KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKT +LVGMKKTLVFYRGRAP
Sbjct: 70  KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAP 129

Query: 129 KGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIA--TAAAVANAVKKSR 186
           KGEKSNWVMHEYRLEGKFAY +LSR+SKDEWVISRVFQKS+      T  A  +  KK++
Sbjct: 130 KGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGSGGTTVTATTSGSKKTK 189

Query: 187 LSCTISSSSTFNHSY-PEPSSPSSVSLPPLLD-HPTIAAAANATTAPN--DSCSYDESHA 242
           ++ T S+S+  + S  PEPSSPSSV LP LLD  P    AA +TTA N    CSY+ S  
Sbjct: 190 MASTTSASNNNSMSLCPEPSSPSSVYLPALLDSSPYSNNAAASTTAFNGGQMCSYNNSSI 249

Query: 243 PSD--QHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDP 300
            +D  +HVSCFST ++ +   +         N S   FD     +P +NA        DP
Sbjct: 250 NTDLKEHVSCFSTSSSTSNVVSGHNNGFNNNNGS---FDLV---SPSMNA-----TTMDP 298

Query: 301 FARFGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWSTVMQDIGG 360
           FARF R NVG++AFP+LRSLQ+NLQLPFFF    S+ A  PF GG           D+ G
Sbjct: 299 FARFQR-NVGVSAFPSLRSLQDNLQLPFFF----STAAAQPFHGG-----------DVLG 342

Query: 361 GGGVVGGGGRLNVG----------PTELDCMWTY 384
           G G+     R  V            +ELDCMW Y
Sbjct: 343 GWGMPQEEQRAVVDGGGHNMGGLGSSELDCMWNY 376

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581025|ref|XP_002531329.1| transcription factor, putative [Ricinus communis] gi|223529068|gb|EEF31052.1| transcription factor, putative [Ricinus communis]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 259/381 (67%), Positives = 287/381 (75%), Gaps = 35/381 (9%)

Query: 5   YNYFDNSDA-HLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAK 63
           Y +FDN DA HLPPGFRFHPTDEELITYYLLKKVLD NFTGRAIAEVDLNKCEPWELP K
Sbjct: 4   YRHFDNGDAGHLPPGFRFHPTDEELITYYLLKKVLDSNFTGRAIAEVDLNKCEPWELPEK 63

Query: 64  AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFY 123
           AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFY
Sbjct: 64  AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFY 123

Query: 124 RGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVK 183
           RGRAPKGEKSNWVMHEYRLEGKFAY YLSRSSKDEWVISRVFQKS     T+++ +NA K
Sbjct: 124 RGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSG-GATTSSSSSNATK 182

Query: 184 KSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDESHAP 243
           K+R +          + YPE SSPSSVSLPPLLD  T   A+       DSCS+D SH+ 
Sbjct: 183 KTRFNNI--------NLYPEASSPSSVSLPPLLDPTTTTTASTTALNDRDSCSFD-SHS- 232

Query: 244 SDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDPFAR 303
             +HVSCFSTIAAAA+AAA           + + FDF   P P + A A      DPF R
Sbjct: 233 QHEHVSCFSTIAAAASAAA-----------NQNNFDFAP-PPPSLPAMA------DPFGR 274

Query: 304 FGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWSTVMQDIGGGGG 363
           + R N+G++AFP+LRSLQENLQLPFFF  PA ++A P    G   +NW    +     GG
Sbjct: 275 YSR-NMGVSAFPSLRSLQENLQLPFFFQSPAPAMATPFSGSGTNPTNWMAGSE----DGG 329

Query: 364 VVGGGGRLNVGPTELDCMWTY 384
             GGGGR+++ PTELDCMWTY
Sbjct: 330 ADGGGGRVSIVPTELDCMWTY 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545472|ref|XP_003541166.1| PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/392 (59%), Positives = 269/392 (68%), Gaps = 51/392 (13%)

Query: 7   YFDNSDA-HLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAK 65
           +FDN++  HLPPGFRFHPTDEELITYYLLKKVLD +FTGRAI EVDLNKCEPWELP KAK
Sbjct: 12  HFDNNNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAK 71

Query: 66  MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRG 125
           MGEKEWYF+SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTC+LVGMKKTLVFYRG
Sbjct: 72  MGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRG 131

Query: 126 RAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQK------SSGAIATAAAVA 179
           RAPKGEKSNWVMHEYRLEGKFAY YLSRSSK+EWVISRVFQK      S+ + A+AA   
Sbjct: 132 RAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKEEWVISRVFQKNTTGGGSTVSSASAATTG 191

Query: 180 NAVKKSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDE 239
            + KK+R+  T S++S+     PEP SPSS+ LPPLL+    AAAA AT    + CS+D 
Sbjct: 192 GSSKKTRM--TTSNNSSNMSLCPEPGSPSSIYLPPLLESSPYAAAA-ATFNDRERCSFD- 247

Query: 240 SHAPSDQ--HVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAA 297
           S A ++Q  HVSCFSTI+ A                   AFD   VP+P           
Sbjct: 248 SAANNNQREHVSCFSTISGA-------------------AFDH-LVPSP--------EPP 279

Query: 298 CDPFARFGR-----NNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPPPFQGGGGGSNWS 352
            DP ARF R       VG++ FP LRSL +NL LPFFF+ P   ++       G   NW+
Sbjct: 280 LDPSARFHRNNNNNVGVGISTFPCLRSLHDNLNLPFFFS-PTGHISSAEVASFGAVGNWT 338

Query: 353 TVMQDIGGGGGVVGGGGRLNVGPTELDCMWTY 384
              ++      +   G  + + P+ELDCMW Y
Sbjct: 339 AAPEE----HRMADSGSGMTIVPSELDCMWDY 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219394451|gb|ACL14368.1| NO APICAL MERISTEM [Aquilegia coerulea]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/390 (58%), Positives = 253/390 (64%), Gaps = 39/390 (10%)

Query: 3   ITYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPA 62
           I++ +FDN++AHLPPGFRFHPTDEELIT+YL+KKVLD  FT RAIAEVDLNKCEPWELP 
Sbjct: 4   ISFPHFDNNEAHLPPGFRFHPTDEELITFYLIKKVLDSTFTCRAIAEVDLNKCEPWELPE 63

Query: 63  KAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVF 122
           KAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSS+T +LVGMKKTLVF
Sbjct: 64  KAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSRTSSLVGMKKTLVF 123

Query: 123 YRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQK--SSGAIATAAAVAN 180
           YRGRAPKGEKSNWVMHEYRLEGK +Y YLSRSSKDEWVISRVFQK     A     +   
Sbjct: 124 YRGRAPKGEKSNWVMHEYRLEGKLSYHYLSRSSKDEWVISRVFQKSGGIIAGGGGGSSGT 183

Query: 181 AVKKSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHPTIAAAANATTAPNDSCSYDES 240
             KK+RL    S +S F     +  SPSS SLPPLLD    +          DSCSYD  
Sbjct: 184 GSKKTRLG---SGTSLFT----DVGSPSSTSLPPLLDSSPYSGPTTV-----DSCSYDS- 230

Query: 241 HAPSDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAACDP 300
              S +HV CFST AA              FN     F F T  AP       A +    
Sbjct: 231 -KTSREHVPCFSTAAAP------------NFNQQQHTFTFNTNAAP---NPVDAASMQQQ 274

Query: 301 FARFGRNNVGLNAFPNLRSLQENLQLPFFF---APPASSVAPPPFQGGG---GGSNWSTV 354
             +FGRN+ G++   +LRSLQENLQ PFFF   AP   S++      GG     SNW   
Sbjct: 275 HHQFGRND-GMSGLSSLRSLQENLQFPFFFSGVAPMQQSISSHHEDIGGVCNSASNWMVG 333

Query: 355 MQDIGGGGGVVGGGGRLNVGPTELDCMWTY 384
                     V    R+ + PTELDCMWTY
Sbjct: 334 HHHDQNHHQKV-ERNRMTLAPTELDCMWTY 362

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461532|ref|XP_002282655.1| PREDICTED: protein CUP-SHAPED COTYLEDON 2 [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 253/391 (64%), Positives = 275/391 (70%), Gaps = 42/391 (10%)

Query: 5   YNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKA 64
           Y++FDNSDAHLPPGFRFHPTDEELITYYL+KKVLD NFTGRAIAEVDLNKCEPWELP KA
Sbjct: 4   YHHFDNSDAHLPPGFRFHPTDEELITYYLIKKVLDSNFTGRAIAEVDLNKCEPWELPEKA 63

Query: 65  KMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYR 124
           KMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTC+LVGMKKTLVFYR
Sbjct: 64  KMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYR 123

Query: 125 GRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGAIATAAAVANAVKK 184
           GRAPKGEKSNWVMHEYRLEGKFAY YLSRSSKDEWVISRVFQKS    ++    A   KK
Sbjct: 124 GRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSG---SSGGGGATGGKK 180

Query: 185 SRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLD-HPTIAAAANATTAPNDSCSYDESHAP 243
           +RLS T++        YPE SSPSS SLPPLLD  P    +A A     +SCSYD   + 
Sbjct: 181 ARLSSTVN-------LYPEVSSPSSASLPPLLDVSPYAGTSAAAAVNDRESCSYDGGESS 233

Query: 244 S-----DQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVPAPVINADAGAGAAC 298
           +     DQHV  FSTIAAAAAAAAA+     +FN       F   P  +I        + 
Sbjct: 234 NNSNARDQHVPWFSTIAAAAAAAAAN-----SFNAHHQPPPFDLAPPSII-------GSI 281

Query: 299 DPFARFGRNNVGLNAFPNLRSLQENLQLPFFF---APPASSVAPPPFQGGGGGS--NWST 353
           DP +RF RN   + AFPNLRSLQENL LPFFF   APP  S   P  + G   S  NW  
Sbjct: 282 DP-SRFPRNG-AVPAFPNLRSLQENLHLPFFFSQVAPPIPSSGDPSTEMGITNSAGNWPA 339

Query: 354 VMQDIGGGGGVVGGGGRLNVGPTELDCMWTY 384
                          GRL +G TELDCMW+Y
Sbjct: 340 PENQ-------KMDNGRLPMGATELDCMWSY 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.440	0.450	0.836	2.5e-83
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.401	0.496	0.824	1.3e-68
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.401	0.458	0.794	3.7e-68
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.408	0.550	0.735	1.3e-67
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.434	0.507	0.710	1.4e-64
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.398	0.487	0.753	9.7e-64
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.403	0.487	0.738	9.9e-64
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.432	0.495	0.694	1.6e-63
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.393	0.477	0.746	3e-62
TAIR|locus:2095958	338	NAC046 "NAC domain containing	0.416	0.473	0.683	5e-60

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
 Identities = 143/171 (83%), Positives = 161/171 (94%)

Query:     1 MEITYNYFDNS-DA-HLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPW 58
             M+I Y ++D+  D+ +LPPGFRFHPTDEELIT+YLL+KVLD  F+ RAIAEVDLNKCEPW
Sbjct:     1 MDIPYYHYDHGGDSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPW 60

Query:    59 ELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKK 118
             +LP +AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREI+SSKTCALVGMKK
Sbjct:    61 QLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKK 120

Query:   119 TLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS 169
             TLVFY+GRAPKGEKSNWVMHEYRLEGKF+Y ++SRSSKDEWVISRVFQK++
Sbjct:   121 TLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTT 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 127/154 (82%), Positives = 141/154 (91%)

Query:    15 LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
             +PPGFRFHPTDEELITYYLLKKVLD NF+  AI++VDLNK EPWELP KAKMGEKEWYFF
Sbjct:    20 MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEWYFF 79

Query:    75 SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSN 134
             +LRDRKYPTGLRTNRATEAGYWKATGKDREI SSKT +L+GMKKTLVFY+GRAPKGEKS 
Sbjct:    80 TLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGEKSC 139

Query:   135 WVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKS 168
             WVMHEYRL+GKF+Y Y+S S+KDEWV+ +V  KS
Sbjct:   140 WVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKS 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
 Identities = 124/156 (79%), Positives = 139/156 (89%)

Query:    15 LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
             LPPGFRFHPTDEELIT+YL KKVLD +F+ +AI EVDLNK EPWELP  AKMGEKEWYFF
Sbjct:    16 LPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKEWYFF 75

Query:    75 SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSN 134
              +RDRKYPTGLRTNRATEAGYWKATGKD+EIY  K+  LVGMKKTLVFYRGRAPKG+K+N
Sbjct:    76 CVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKS--LVGMKKTLVFYRGRAPKGQKTN 133

Query:   135 WVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSG 170
             WVMHEYRLEGKF+   L +++K+EWVI RVFQKS+G
Sbjct:   134 WVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAG 169

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 1.3e-67, Sum P(3) = 1.3e-67
 Identities = 117/159 (73%), Positives = 133/159 (83%)

Query:     9 DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGE 68
             D     LPPGFRFHPTDEELIT+YL  KV +  F+  AI EVDLNK EPW+LP KAKMGE
Sbjct:    14 DEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGE 73

Query:    69 KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAP 128
             KEWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EI+  K+  LVGMKKTLVFY+GRAP
Sbjct:    74 KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKS--LVGMKKTLVFYKGRAP 131

Query:   129 KGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQK 167
             KG K+NWVMHEYRLEGK+  + L +++K+EWVI RVFQK
Sbjct:   132 KGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQK 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 123/173 (71%), Positives = 144/173 (83%)

Query:     1 MEITYNYF---DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEP 57
             ME T+  F   D+    LPPGFRFHPTDEELIT+YL KKVLD  F+ +AI EVDLNK EP
Sbjct:     1 ME-TFGVFHKEDDEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEP 59

Query:    58 WELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMK 117
             WELP KAK+GEKEWYFF +RDRKYPTGLRTNRAT+AGYWKATGKD+EI+  K+  LVGMK
Sbjct:    60 WELPYKAKIGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGKS--LVGMK 117

Query:   118 KTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSG 170
             KTLVFYRGRAPKG+K+NWVMHEYRL+GK +   L +++K+EWVI RVF K++G
Sbjct:   118 KTLVFYRGRAPKGQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHKTAG 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 119/158 (75%), Positives = 136/158 (86%)

Query:    12 DAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEW 71
             + +LPPGFRFHPTDEELIT+YL +KV D  FTG+A+ +VDLNKCEPW+LPAKA MGEKEW
Sbjct:     2 EENLPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDVDLNKCEPWDLPAKASMGEKEW 61

Query:    72 YFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGE 131
             YFFS RDRKYPTGLRTNRATEAGYWK TGKD+EIY S    LVGMKKTLVFY+GRAPKGE
Sbjct:    62 YFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRSGV--LVGMKKTLVFYKGRAPKGE 119

Query:   132 KSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS 169
             KSNWVMHEYRLE K   Q  + ++K+EWV+ RVF+KS+
Sbjct:   120 KSNWVMHEYRLESK---QPFNPTNKEEWVVCRVFEKST 154

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
 Identities = 116/157 (73%), Positives = 134/157 (85%)

Query:     9 DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGE 68
             D+    LPPGFRFHPTDEELIT+YL  KV++  F+  AI EVDLNK EPW+LP KAK+GE
Sbjct:    18 DSEKIDLPPGFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVDLNKVEPWDLPWKAKLGE 77

Query:    69 KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAP 128
             KEWYFF +RDRKYPTGLRTNRAT+AGYWKATGKD+EI+  K+  LVGMKKTLVFY+GRAP
Sbjct:    78 KEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKGKS--LVGMKKTLVFYKGRAP 135

Query:   129 KGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVF 165
             KG K+NWVMHEYRLEGKFA   LS+++K+E VISRVF
Sbjct:   136 KGVKTNWVMHEYRLEGKFAIDNLSKTAKNECVISRVF 172

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 116/167 (69%), Positives = 138/167 (82%)

Query:     3 ITYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPA 62
             +  N+       LPPGFRFHPTDEE+IT YL +KVL+  FT  A+ E DLNKCEPW+LP 
Sbjct:     9 VVLNHGGEELVDLPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPWDLPK 68

Query:    63 KAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVF 122
             +AKMGEKE+YFF  RDRKYPTG+RTNRATE+GYWKATGKD+EI+  K C LVGMKKTLVF
Sbjct:    69 RAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGC-LVGMKKTLVF 127

Query:   123 YRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS 169
             YRGRAPKGEK+NWVMHEYRLEGK++Y  L +S++DEWV+ RVF K++
Sbjct:   128 YRGRAPKGEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKNN 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 115/154 (74%), Positives = 132/154 (85%)

Query:    15 LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
             LPPGFRFHPTDEELI+YYL+ K+ D NFTG+AIA+VDLNK EPWELP KAKMG KEWYFF
Sbjct:    16 LPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSEPWELPEKAKMGGKEWYFF 75

Query:    75 SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSN 134
             SLRDRKYPTG+RTNRAT  GYWK TGKD+EI++S T  LVGMKKTLVFYRGRAP+GEK+ 
Sbjct:    76 SLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVFYRGRAPRGEKTC 135

Query:   135 WVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKS 168
             WVMHEYRL  K +Y+    S +DEWV+ RVF+K+
Sbjct:   136 WVMHEYRLHSKSSYR---TSKQDEWVVCRVFKKT 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095958 NAC046 "NAC domain containing protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 110/161 (68%), Positives = 132/161 (81%)

Query:     9 DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGE 68
             D     LPPGFRFHPTDEE+IT+YL +KV +  FT  AI + DLNK EPW+LP  AKMGE
Sbjct:    14 DQEVVDLPPGFRFHPTDEEIITHYLKEKVFNIRFTAAAIGQADLNKNEPWDLPKIAKMGE 73

Query:    69 KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAP 128
             KE+YFF  RDRKYPTG+RTNRAT +GYWKATGKD+EI+  K C LVGMKKTLVFY GRAP
Sbjct:    74 KEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGC-LVGMKKTLVFYTGRAP 132

Query:   129 KGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS 169
             KGEK+NWVMHEYRL+GK++Y  L ++++DEWV+ RVF K++
Sbjct:   133 KGEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHKNA 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010286 "heat acclimation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04017	NAC98_ARATH	No assigned EC number	0.5072	0.9036	0.9253	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	5e-83
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  248 bits (636), Expect = 5e-83
 Identities = 90/131 (68%), Positives = 103/131 (78%), Gaps = 3/131 (2%)

Query: 15  LPPGFRFHPTDEELITYYLLKKVLDCNFT-GRAIAEVDLNKCEPWELP-AKAKMGEKEWY 72
           LPPGFRFHPTDEEL+ YYL +KVL         I EVD+ K EPW+LP  KAK G++EWY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 73  FFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEK 132
           FFS RDRKYP G RTNRAT +GYWKATGKD+ + S     +VGMKKTLVFY+GRAPKGEK
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGG-EVVGMKKTLVFYKGRAPKGEK 119

Query: 133 SNWVMHEYRLE 143
           ++WVMHEYRLE
Sbjct: 120 TDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 9/176 (5%)

Query: 168 SSGAIATAAAVANAVKKSRLSCTISSSSTFNHSYPEPSSPSSVSLPPLLDHP---TIAAA 224
            +      A VA AV         +  ++   +    +  +  +L P        T A A
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 225 ANATTAPNDSCSYDESHAPSDQHVSCFSTIAAAAAAAAASAATATTFNTSSSAFDFTTVP 284
             A  AP  +    +  A  D  V   +   A+A +           ++ S++   +  P
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 285 APVINADAGAGAACDPFARFGRNNVGLNAFPNLRSLQENLQLPFFFAPPASSVAPP 340
                  A         +      V     P   S ++        APPA    PP
Sbjct: 486 PDAAFEPA---PRAAAPSAATPAAVPDARAPAAASREDAPAAA---APPAPEARPP 535

Length = 830

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.8e-43  Score=304.59  Aligned_cols=128  Identities=57%  Similarity=1.071  Sum_probs=97.9

Q ss_pred             CCCCeeECCChHHHHHHHHHhhhcCCCCCC-CceeeccCCCCCCCCCCccccCCCeeEEEeccCCccCCCCCCcccccCC
Q 047710           15 LPPGFRFHPTDEELITYYLLKKVLDCNFTG-RAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEA   93 (384)
Q Consensus        15 LPPGFRF~PTDEELI~~YL~~Kv~g~pl~~-~~I~evDVY~~ePWdLP~~~~~gekeWYFFs~r~rKy~~G~R~nRat~g   93 (384)
                      |||||||+|||||||.+||++|+.+.+++. .+|+++|||.+|||+||.....++++||||+++++++.+|.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999998877 7899999999999999965555678999999999999999999999999


Q ss_pred             ceEeecCCceeeeeCCCceeeeeEEEEEeeecCCCCCCccCeEEEEEEeC
Q 047710           94 GYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE  143 (384)
Q Consensus        94 GyWKatGkdk~I~~~~~G~vVG~KKtLvFY~Grapkg~KT~WvMhEYrL~  143 (384)
                      |+||.+|+++.|.+. ++.+||+||+|+||.++.+++.||+|+||||+|+
T Consensus        81 G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999985 6899999999999999889999999999999985

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		6e-43
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		6e-43
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		4e-39

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  171 bits (433), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 109/156 (69%), Gaps = 6/156 (3%)
Query: 15  LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
           LPPGFRF+PTDEEL+  YL +K    +F+ + IAE+DL K +PW LP KA  GEKEWYFF
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76
Query: 75  SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSN 134
           S RDRKYP G R NR   +GYWKATG D+ I  S     VG+KK LVFY G+APKG K+N
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTKTN 134
Query: 135 WVMHEYRLEGKFAYQYLSRSSK-DEWVISRVFQKSS 169
           W+MHEYRL         + S+K D+WV+ R+++K S
Sbjct: 135 WIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKKQS 167

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  171 bits (433), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/160 (55%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 11  SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKE 70
           +   LPPGFRF+PTDEEL+  YL +K    +F+ + IAE+DL K +PW LP KA  GEKE
Sbjct: 16  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 75
Query: 71  WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKG 130
           WYFFS RDRKYP G R NR   +GYWKATG D+ I  S     VG+KK LVFY G+APKG
Sbjct: 76  WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKG 133
Query: 131 EKSNWVMHEYRLEGKFAYQYLSRSSK-DEWVISRVFQKSS 169
            K+NW+MHEYRL         + S+K D+WV+ R+++K S
Sbjct: 134 TKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKKQS 170

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 5/162 (3%)
Query: 11  SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKE 70
           ++ +LPPGFRFHPTD+EL+ +YL +K          IAEVDL K +PW+LP +A  G +E
Sbjct: 11  AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE 70
Query: 71  WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKG 130
           WYFF+ RDRKYP G R NRA   GYWKATG D+ +  +     +G+KK LVFY G+AP+G
Sbjct: 71  WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAGKAPRG 128
Query: 131 EKSNWVMHEYRLEGKFAYQYLSRSSK---DEWVISRVFQKSS 169
            K++W+MHEYRL         ++      D+WV+ R++ K +
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-104
1ut7_A	171	No apical meristem protein; transcription regulati	1e-104

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  303 bits (778), Expect = e-104
 Identities = 78/173 (45%), Positives = 107/173 (61%), Gaps = 5/173 (2%)

Query: 1   MEITYNYFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWEL 60
           M +       ++ +LPPGFRFHPTD+EL+ +YL +K          IAEVDL K +PW+L
Sbjct: 1   MGMRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDL 60

Query: 61  PAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTL 120
           P +A  G +EWYFF+ RDRKYP G R NRA   GYWKATG D+ +        +G+KK L
Sbjct: 61  PERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGR--TLGIKKAL 118

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSS---KDEWVISRVFQKSSG 170
           VFY G+AP+G K++W+MHEYRL         ++      D+WV+ R++ K + 
Sbjct: 119 VFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  303 bits (777), Expect = e-104
 Identities = 86/163 (52%), Positives = 108/163 (66%), Gaps = 4/163 (2%)

Query: 9   DNSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGE 68
             +   LPPGFRF+PTDEEL+  YL +K    +F+ + IAE+DL K +PW LP KA  GE
Sbjct: 11  PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGE 70

Query: 69  KEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAP 128
           KEWYFFS RDRKYP G R NR   +GYWKATG D+ I +      VG+KK LVFY G+AP
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ--RVGIKKALVFYIGKAP 128

Query: 129 KGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSSGA 171
           KG K+NW+MHEYRL           +  D+WV+ R+++K S A
Sbjct: 129 KGTKTNWIMHEYRLIEPSRRN--GSTKLDDWVLCRIYKKQSSA 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=4.1e-57  Score=410.81  Aligned_cols=159  Identities=48%  Similarity=0.950  Sum_probs=137.0

Q ss_pred             CCCCCCCCCeeECCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCCCCccccCCCeeEEEeccCCccCCCCCCccc
Q 047710           10 NSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNR   89 (384)
Q Consensus        10 ~~~~~LPPGFRF~PTDEELI~~YL~~Kv~g~pl~~~~I~evDVY~~ePWdLP~~~~~gekeWYFFs~r~rKy~~G~R~nR   89 (384)
                      ..++.|||||||||||||||.|||++|+.+.+++..+|+|+|||++|||+||+.+..++++||||+++++||++|.|++|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence            35679999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             ccCCceEeecCCceeeeeCCCceeeeeEEEEEeeecCCCCCCccCeEEEEEEeCCccccc---cccCCCCCceEEEEEEE
Q 047710           90 ATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQ---YLSRSSKDEWVISRVFQ  166 (384)
Q Consensus        90 at~gGyWKatGkdk~I~~~~~G~vVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~---~~~~~~~dewVLCRVf~  166 (384)
                      +|++||||++|+++.|...  |.+||+||+|+||+|++|++.||+|+||||+|.+.....   .......++|||||||+
T Consensus        90 ~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             EETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             ecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            9999999999999999864  789999999999999999999999999999998763211   00112468999999999


Q ss_pred             ccCc
Q 047710          167 KSSG  170 (384)
Q Consensus       167 Ks~~  170 (384)
                      |++.
T Consensus       168 K~~~  171 (174)
T 3ulx_A          168 KKNE  171 (174)
T ss_dssp             SCC-
T ss_pred             cCCC
Confidence            9864

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=7.7e-57  Score=407.86  Aligned_cols=158  Identities=54%  Similarity=0.981  Sum_probs=133.5

Q ss_pred             CCCCCCCCCeeECCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCCCCccccCCCeeEEEeccCCccCCCCCCccc
Q 047710           10 NSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNR   89 (384)
Q Consensus        10 ~~~~~LPPGFRF~PTDEELI~~YL~~Kv~g~pl~~~~I~evDVY~~ePWdLP~~~~~gekeWYFFs~r~rKy~~G~R~nR   89 (384)
                      ..+..|||||||||||||||.|||++|+.+.+++..+|+|+|||++|||+||+.++.++++||||+++++||++|.|++|
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence            34679999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             ccCCceEeecCCceeeeeCCCceeeeeEEEEEeeecCCCCCCccCeEEEEEEeCCccccccccCCCCCceEEEEEEEccC
Q 047710           90 ATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS  169 (384)
Q Consensus        90 at~gGyWKatGkdk~I~~~~~G~vVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~~~~~~~dewVLCRVf~Ks~  169 (384)
                      +|++||||++|+++.|...  +.+||+||+|+||+|++|++.||+|+||||+|.....  ......+++|||||||+|+.
T Consensus        92 ~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~~~~~~~~~~VlCrv~~k~~  167 (171)
T 1ut7_A           92 VAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCRIYKKQS  167 (171)
T ss_dssp             EETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC-
T ss_pred             cCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--ccCcccCCCEEEEEEEEcCC
Confidence            9999999999999999974  6999999999999999999999999999999987631  11123468999999999986


Q ss_pred             cc
Q 047710          170 GA  171 (384)
Q Consensus       170 ~~  171 (384)
                      ..
T Consensus       168 ~~  169 (171)
T 1ut7_A          168 SA  169 (171)
T ss_dssp             --
T ss_pred             CC
Confidence            53

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	7e-74

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  225 bits (574), Expect = 7e-74
 Identities = 84/157 (53%), Positives = 106/157 (67%), Gaps = 4/157 (2%)

Query: 11  SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKE 70
           +   LPPGFRF+PTDEEL+  YL +K    +F+ + IAE+DL K +PW LP KA  GEKE
Sbjct: 13  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 72

Query: 71  WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKG 130
           WYFFS RDRKYP G R NR   +GYWKATG D+ I +      VG+KK LVFY G+APKG
Sbjct: 73  WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ--RVGIKKALVFYIGKAPKG 130

Query: 131 EKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQK 167
            K+NW+MHEYRL           +  D+WV+ R+++K
Sbjct: 131 TKTNWIMHEYRLIEPSRRN--GSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-53  Score=380.31  Aligned_cols=155  Identities=54%  Similarity=0.996  Sum_probs=132.4

Q ss_pred             CCCCCCCCCeeECCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCCCCccccCCCeeEEEeccCCccCCCCCCccc
Q 047710           10 NSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNR   89 (384)
Q Consensus        10 ~~~~~LPPGFRF~PTDEELI~~YL~~Kv~g~pl~~~~I~evDVY~~ePWdLP~~~~~gekeWYFFs~r~rKy~~G~R~nR   89 (384)
                      -.+++|||||||+|||||||.|||++|+.+.+++..+|+++|||++|||+||+....++++||||+++++++++|.|.+|
T Consensus        12 ~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R   91 (166)
T d1ut7a_          12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR   91 (166)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred             cccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCcccc
Confidence            45779999999999999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             ccCCceEeecCCceeeeeCCCceeeeeEEEEEeeecCCCCCCccCeEEEEEEeCCccccccccCCCCCceEEEEEEEcc
Q 047710           90 ATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKS  168 (384)
Q Consensus        90 at~gGyWKatGkdk~I~~~~~G~vVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~~~~~~~dewVLCRVf~Ks  168 (384)
                      +|++|+||++|+++.|.+  +|.+||+||+|+||+++.+++.||+|+||||+|.+.....  .....++|||||||+|.
T Consensus        92 ~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~--~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          92 VAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN--GSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             EETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC
T ss_pred             ccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc--CccccCCEEEEEEEecC
Confidence            999999999999999886  4789999999999999999999999999999998764321  23456899999999984