Citrus Sinensis ID: 047728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
Protein Sequence
MKGARGGSRPGRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS
Secondary Structure (PSIPRED)
ccccccccccEEEEEccccEEEEEEccEEEccccccccEEEEEEcccccccEEEEccccccccccccccccEEEEEEccccccEEEEcccccccccccccEEEEEEccccccEEEEEEcccEEEEEcccccEEEEcccccccEEEEccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccccEEEEcccccEEEEEEccccEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccEEEcEEccccccEEEEEEccccEEEEccccccEEEEEccccccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEccccccccccEEEEEEcccEEEEEcccccEEEEEcccccEEcccccccccccEEEEEEccccccccccccEEEEEEEccccEEEEEccccccccccccccccccccccccEEEEEcccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccccccccccEEEEEcccccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEcccccEEEEEccccEEEEEccccEEEEEccccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEEccccccccccEEEEcccccEEEEEEccccEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEcccccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEcccccEcccccccEEEEEccccEEEEEEccccccccccccEEEEEccccccEEEEEEEccccccccEEEEcc
Coil and Loop (DISEMBL)
mkgarggsrpgrifseENSARAQKFgrlkssepmdedfsipycggnnnntppiydkafaiaqdgspthndssspfskspwsthhvsvptpsnnddgfspnvligslvreeghiYSLAAAGDllytgsdsknirVWKNqrefsgfksnsgLVKAIVISNekifsghqdgkirvwkvsskdasihkrvgtlptfkdfikcsmkpsnyiEVRRHRNGLWIKHFDAisslsmsedqnLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDglvftgsadgTVKVWRRElqgkgtkhffSQTLLKQECAVTalaispdaaivycgssdglvNFWERELnlshggvlrgHKLAILCLVTagnlvfsgsadmSICIWRRKENEHICLSmltghsgpvkclavekddeslsreKRWILYSGSLDKSVKMWrvseqapplvsttqqhpleghgvapnslpyapsfssqgricqkrs
Flexible Loop (DISEMBL)
mkgarggsrpgrifseensaRAQKFgrlkssepmdEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSPTHNDSSSPFSKSPWSTHHVSVptpsnnddgfSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQRefsgfksnsglVKAIVISNekifsghqdgkirvwkvsskdasihkrvgtlptfkdfikcSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMltghsgpvkCLAVEkddeslsrekrWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLpyapsfssqgricqkrs
Low Complexity Region (SEG)
MKGARGGSRPGRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSPTHNDssspfskspwsTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS
Disordered region (IsUnstruct)
****************************************PYCG********IYDKAFA****************************************NVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK******REKRWILYSGSLDKSVKMWR********************************************
Disordered Region (DISOPRED)
*************FSEENSARAQKFGRLKSS****EDFSIPYCGGNNNNTPPIYDKAFAIAQDGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS
Disordered Region (DISEMBL)
*********PGRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQD***********************VPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS************
Disordered Region (DISPRO)
********RPGRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGARGGSRPGRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	474	2.2.26 [Sep-21-2011]
Q00808	1356	Vegetative incompatibilit	yes	no	0.691	0.241	0.272	1e-18
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.548	0.170	0.273	1e-17
P90648	732	Myosin heavy chain kinase	yes	no	0.554	0.359	0.268	2e-17
Q61FW2	589	F-box/WD repeat-containin	N/A	no	0.392	0.315	0.325	2e-16
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.459	0.129	0.289	8e-16
Q54KL5	335	WD repeat-containing prot	no	no	0.592	0.838	0.249	3e-15
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.512	0.193	0.293	8e-15
Q17963	376	WD repeat-containing prot	yes	no	0.660	0.832	0.249	5e-14
Q9V3J8	361	Protein will die slowly O	yes	no	0.563	0.739	0.239	6e-14
Q09990	665	F-box/WD repeat-containin	no	no	0.502	0.357	0.261	1e-13

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 168/374 (44%), Gaps = 46/374 (12%)

Query: 110  EGH---IYSLA--AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEK 160
            EGH   + S+A  A G  + +GSD K I++W           + + G V ++  S   E+
Sbjct: 838  EGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRER 897

Query: 161  IFSGHQDGKIRVWKVSSKDASIH-----KRVGTLPTFKDFIKCSMKPSNY-IEVRRHRNG 214
            + SG  D  I++W  +S   +        RV ++    D  + +    ++ I++    +G
Sbjct: 898  VASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASG 957

Query: 215  LWIK----HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA 270
               +    H  ++ S++ S D   + S S DKT K+W T+   C +++  H  +V S+  
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAF 1017

Query: 271  GFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS 329
              DG  V +GS D T+K+W       GT    +QTL      V ++  SPD   V  GS 
Sbjct: 1018 SPDGQRVASGSDDKTIKIWD---TASGT---CTQTLEGHGGWVQSVVFSPDGQRVASGSD 1071

Query: 330  DGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICL 387
            D  +  W+  ++ +    L GH  ++  +  +  G  V SGS D +I IW        C 
Sbjct: 1072 DHTIKIWD-AVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASG--TCT 1128

Query: 388  SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPL 447
              L GH G V  +A   D + ++        SGS+D ++K+W  +       S T    L
Sbjct: 1129 QTLEGHGGWVHSVAFSPDGQRVA--------SGSIDGTIKIWDAA-------SGTCTQTL 1173

Query: 448  EGHGVAPNSLPYAP 461
            EGHG    S+ ++P
Sbjct: 1174 EGHGGWVQSVAFSP 1187

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.
Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 146/322 (45%), Gaps = 62/322 (19%)

Query: 120  GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVISNE--KIFSGHQDGKIRVWKV 175
            G  L +GS  + +R+W+  + +    F+ ++  V ++V + +   + SG  D  +R+W +
Sbjct: 1212 GSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI 1271

Query: 176  SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL 235
            SS           L TF+                         H + ++S++ + D ++L
Sbjct: 1272 SSSKC--------LHTFQ------------------------GHTNWVNSVAFNPDGSML 1299

Query: 236  YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG 294
             S S D+T ++W  S  KCL +   H   V+S+    DG ++ +GS D TV++W     G
Sbjct: 1300 ASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSIS-SG 1358

Query: 295  KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG---VLRGH 351
            +    F   T       V ++  SPD AI+  GS D  V  W    ++S G     L+GH
Sbjct: 1359 ECLYTFLGHT-----NWVGSVIFSPDGAILASGSGDQTVRLW----SISSGKCLYTLQGH 1409

Query: 352  KLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409
               +  +V +  G L+ SGS D ++ +W     E  CL  L GH   V+ +A   D    
Sbjct: 1410 NNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGE--CLYTLHGHINSVRSVAFSSDG--- 1464

Query: 410  SREKRWILYSGSLDKSVKMWRV 431
                  IL SGS D+++K+W V
Sbjct: 1465 -----LILASGSDDETIKLWDV 1481

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 61/324 (18%)

Query: 112 HIYS-LAAAGDLLYTGSDSKNIRVW----KNQREFSGFKSNSGLVKAIVISNEKIFSGHQ 166
           H+ S L    +LL+TG    +IRV+    +N       K + G V++I  +++ +FSG  
Sbjct: 461 HVTSHLCICDNLLFTGCSDNSIRVYDYKSQNMECVQTLKGHEGPVESICYNDQYLFSGSS 520

Query: 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226
           D  I+VW +        K++  + T +                         H   + ++
Sbjct: 521 DHSIKVWDL--------KKLRCIFTLEG------------------------HDKPVHTV 548

Query: 227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVK 286
            +++    L+S S DKT KVW     +C  ++ +H  AV ++      L F+GS D T+K
Sbjct: 549 LLND--KYLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYL-FSGSNDKTIK 605

Query: 287 VWRRELQGKGTKHFFSQTLLKQECA-VTALAISPDAAIVYCGSSDGLVNFWERELNLSHG 345
           VW         K F     LK     VT + I      +Y GS D  +  W  + +L   
Sbjct: 606 VW-------DLKTFRCNYTLKGHTKWVTTICIL--GTNLYSGSYDKTIRVWNLK-SLECS 655

Query: 346 GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
             LRGH   +  +V    L+F+ S D +I IW  +     C + L GH+  V+CLAV +D
Sbjct: 656 ATLRGHDRWVEHMVICDKLLFTASDDNTIKIWDLETLR--CNTTLEGHNATVQCLAVWED 713

Query: 406 DESLSREKRWILYSGSLDKSVKMW 429
            +         + S S D+S+++W
Sbjct: 714 KKC--------VISCSHDQSIRVW 729

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 95/206 (46%), Gaps = 20/206 (9%)

Query: 228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV-NSIVAGFDGLVFTGSADGTVK 286
           M    +LL + S D T KVW   D +   ++  H   V  S ++     + +GS D TVK
Sbjct: 264 MQIHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVK 323

Query: 287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG 346
           VWR E        F   TL      V  +A++    +   GS D  +  W+ E  L H  
Sbjct: 324 VWRAE------DGFLLHTLQGHTSTVRCMAMANTTLVT--GSRDCTLRVWDIETGL-HVR 374

Query: 347 VLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406
            L+GH+ A+ C+   GN+V SG  D ++ IW     +  CL  L GHS  V  L  E + 
Sbjct: 375 TLQGHQAAVRCVQFDGNIVVSGGYDFTVKIWDAFSGK--CLRTLIGHSNRVYSLLYESE- 431

Query: 407 ESLSREKRWILYSGSLDKSVKMWRVS 432
                  R I+ SGSLD S+++W  S
Sbjct: 432 -------RSIVCSGSLDTSIRVWDFS 450

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 85.5 bits (210), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 38/256 (14%)

Query: 219  HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
            H D + S+S+S D   + S S DKT K+W + D +   ++  H+DAV S+    DG  + 
Sbjct: 1071 HKDGVISISISRDGQTIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVYSVSFSPDGQTIA 1129

Query: 278  TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
            +G +D T+K+W+      GT     +T+   E  V  +  SPD   +   SSD  +  W+
Sbjct: 1130 SGGSDKTIKLWQTS---DGT---LLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWD 1183

Query: 338  R---ELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTG 392
                +L ++    L GH   ++ +  +  G  + +GS D ++ +W R++ +   L  L G
Sbjct: 1184 TTSGQLLMT----LTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGK--LLKTLNG 1237

Query: 393  HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV 452
            H   V  L+   D ++L+        S S DK++K+WR+++    LV T     L+GH  
Sbjct: 1238 HQDWVNSLSFSPDGKTLA--------SASADKTIKLWRIAD--GKLVKT-----LKGH-- 1280

Query: 453  APNSLPYAPSFSSQGR 468
              N   +  +FSS G+
Sbjct: 1281 --NDSVWDVNFSSDGK 1294

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 143/353 (40%), Gaps = 72/353 (20%)

Query: 98  SPNVLIGSLVREEGHIYSLAAA-----GDLLYTGSDSKNIRVW-----KNQREFSGFKSN 147
           +PN ++   ++  GH+ S+++      G  L + S  K I++W     K +R   G K  
Sbjct: 33  TPNYILKYTLK--GHLKSISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEG 90

Query: 148 SGLVKAIVISNEK--IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY 205
              +  I  S +   I S   D  I++W V S      K V TL   K+++         
Sbjct: 91  ---ISDIAWSQDSKLICSASDDKTIKIWDVESG-----KMVKTLKGHKEYV--------- 133

Query: 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265
                               +S +   NL+ S S+D+  ++W  +  +C + + AH D V
Sbjct: 134 ------------------FGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPV 175

Query: 266 NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV 324
             +    DG LV +GS DGTV++W        T    +    +    V+ +  SP+   V
Sbjct: 176 TGVHFNRDGTLVVSGSYDGTVRIWDTT-----TGQLLNTISTEDGKEVSFVKFSPNGKFV 230

Query: 325 YCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL-----VTAGNLVFSGSADMSICIWRR 379
             G+ D  +  W    N        GHK    C+     VT G  + +GS D  I I+  
Sbjct: 231 LAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIYNL 290

Query: 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL--DKSVKMWR 430
           +  E   +  L GH   V  +A    +         I+ SG+L  D+SVK+W+
Sbjct: 291 QTRE--IVQTLAGHEDVVLTVACHPTEN--------IIASGALEKDRSVKIWK 333

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 82.0 bits (201), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 124/279 (44%), Gaps = 36/279 (12%)

Query: 167 DGKIRVWKVSS-KDASIHKRVGTLPTFKDF-----IKCSMKPSNYIEVRRHRNGLWIK-- 218
           D  +RVW+V S K   I +       F  F     I  S      +++   R+G+ IK  
Sbjct: 663 DCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTL 722

Query: 219 --HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLV 276
             H   + S++   D   L SAS DKT K+W   D  CL+++  H D V  +    DG  
Sbjct: 723 TGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNT 782

Query: 277 FTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
              S AD T+K+W    QGK  +     TL      V ++A S D   +  GS D  +  
Sbjct: 783 LASSAADHTIKLWDVS-QGKCLR-----TLKSHTGWVRSVAFSADGQTLASGSGDRTIKI 836

Query: 336 WERELNLSHGGVLR---GHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSML 390
           W    N   G  L+   GH  ++  +  +    ++ SGS D +I +W  +   HIC+  L
Sbjct: 837 W----NYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQ--THICIKTL 890

Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
            GH+  V  +A   D ++L+          SLD+SV++W
Sbjct: 891 HGHTNEVCSVAFSPDGQTLA--------CVSLDQSVRLW 921

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q17963|TG125_CAEEL WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=4 SV=1

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 162/397 (40%), Gaps = 84/397 (21%)

Query: 64  GSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGS---------LVREEGHIY 114
           GS     S+SP S SP  ++    P P  +    +PN    S         +   EGH  
Sbjct: 31  GSSAPAPSTSPNSISP--SNPTGTPAPGASAQTPNPNAAGASASGSANYKLMCTLEGHTK 88

Query: 115 SLAAA-----GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGK 169
           S+++A     G  L T S  K +++W                       E+  +GH+ G 
Sbjct: 89  SISSAKFSPCGKYLGTSSADKTVKIWNMDHMIC----------------ERTLTGHKLGV 132

Query: 170 IRV-WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228
             + W   S+         TL  F + +   M  +    ++ H N ++  +F+  SSL  
Sbjct: 133 NDIAWSSDSRCVVSASDDKTLKIF-EIVTSRMTKT----LKGHNNYVFCCNFNPQSSL-- 185

Query: 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKV 287
                 + S S+D++ ++W      C++++ AH D V+++    DG L+ +GS DG V++
Sbjct: 186 ------VVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRI 239

Query: 288 WRRELQGKGTKHFFSQTLLKQECAVTALA-ISPDAAIVYCGSSDGLVNFWERELNLSHGG 346
           W     G+  K     TL+  E    A    SP+   +   + D  +  W+     S G 
Sbjct: 240 WDTA-NGQCIK-----TLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWD----FSKGK 289

Query: 347 VLR---GHKLAILCL-----VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV- 397
            L+   GH+ +  C+     VT G  + SGS D  I IW  +  E +    L GH+ PV 
Sbjct: 290 TLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTREIV--QCLEGHTQPVL 347

Query: 398 --KCLAVEKDDESLSREKRWILYSGSL--DKSVKMWR 430
              C  V+            I+ SG+L  D  + +WR
Sbjct: 348 ASDCHPVQN-----------IIASGALEPDNKIHIWR 373

Caenorhabditis elegans (taxid: 6239)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 144/342 (42%), Gaps = 75/342 (21%)

Query: 111 GHIYSLAAA-----GDLLYTGSDSKNIRVW-----KNQREFSGFKSNSGLVKAIVISNEK 160
           GH  +++A      G+ L + S  K I++W     K ++  SG K   G+      S+ +
Sbjct: 70  GHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSR 127

Query: 161 IF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219
           +  SG  D  ++VW++S+      K + TL    +++ C                     
Sbjct: 128 LLVSGSDDKTLKVWELSTG-----KSLKTLKGHSNYVFC--------------------- 161

Query: 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT 278
                  + +   NL+ S S+D++ ++W     KCL+++ AH D V+++    DG L+ +
Sbjct: 162 ------CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 215

Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
            S DG  ++W     G+  K             V+ +  SP+   +   + D  +  W+ 
Sbjct: 216 SSYDGLCRIWDTA-SGQCLKTLIDD----DNPPVSFVKFSPNGKYILAATLDNTLKLWD- 269

Query: 339 ELNLSHGGVLR---GHKLAILCL-----VTAGNLVFSGSADMSICIWRRKENEHICLSML 390
               S G  L+   GHK    C+     VT G  + SGS D  + IW  +  E   +  L
Sbjct: 270 ---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKE--VVQKL 324

Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSL--DKSVKMWR 430
            GH+  V C A    +         I+ S +L  DK++K+W+
Sbjct: 325 QGHTDTVLCTACHPTEN--------IIASAALENDKTIKLWK 358

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 120/291 (41%), Gaps = 53/291 (18%)

Query: 147 NSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYI 206
           NS  V  +   ++KI SG +D  I++W    KD S                CS   S + 
Sbjct: 221 NSKGVYCLQYDDDKIVSGLRDNTIKIW--DRKDYS----------------CSRILSGHT 262

Query: 207 EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN 266
                            S L +  D  ++ S S D T +VW     +C++++I H +AV 
Sbjct: 263 G----------------SVLCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVL 306

Query: 267 SIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326
            +    +G++ T S D ++ VW        T     + L+    AV  +    D   +  
Sbjct: 307 HLRFA-NGIMVTCSKDRSIAVWDMVSPRDIT---IRRVLVGHRAAVNVVDF--DDRYIVS 360

Query: 327 GSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC 386
            S D  +  W  +  L     L GH+  I CL   G LV SGS+D +I +W    +  +C
Sbjct: 361 ASGDRTIKVWSMD-TLEFVRTLAGHRRGIACLQYRGRLVVSGSSDNTIRLW--DIHSGVC 417

Query: 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437
           L +L GH   V+C+  +        EKR  + SG+ D  +K+W +     P
Sbjct: 418 LRVLEGHEELVRCIRFD--------EKR--IVSGAYDGKIKVWDLQAALDP 458

Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
147794784	511	hypothetical protein VITISV_002364 [Viti	0.898	0.833	0.705	1e-179
224096874	462	predicted protein [Populus trichocarpa]	0.957	0.982	0.689	1e-179
225468903	451	PREDICTED: uncharacterized WD repeat-con	0.934	0.982	0.691	1e-178
449460666	471	PREDICTED: uncharacterized WD repeat-con	0.871	0.876	0.691	1e-168
449510309	412	PREDICTED: uncharacterized WD repeat-con	0.835	0.961	0.718	1e-167
357483119	457	Guanine nucleotide-binding protein subun	0.890	0.923	0.647	1e-167
224081527	341	predicted protein [Populus trichocarpa]	0.710	0.988	0.804	1e-164
255562735	462	F-box and wd40 domain protein, putative	0.774	0.794	0.735	1e-163
356540707	458	PREDICTED: uncharacterized WD repeat-con	0.869	0.899	0.643	1e-162
356496834	449	PREDICTED: uncharacterized WD repeat-con	0.881	0.930	0.638	1e-160

>gi|147794784|emb|CAN66843.1| hypothetical protein VITISV_002364 [Vitis vinifera]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 314/445 (70%), Positives = 364/445 (81%), Gaps = 19/445 (4%)

Query: 11  GRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSP---T 67
           G++  E NS   Q FG L  S P D+DFS      N+ ++ P    + A   D SP   T
Sbjct: 59  GKMLEESNSLERQTFGNLMHSAPPDDDFSFR----NSASSAP----SPAHNGDASPYIGT 110

Query: 68  HNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGS 127
              +SSP++KSPWS+H   V  PSN +    PN L+GSLVREEGHIYSLA +GDLLYTGS
Sbjct: 111 WEGASSPYTKSPWSSH---VVPPSNGNH--YPNGLMGSLVREEGHIYSLATSGDLLYTGS 165

Query: 128 DSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187
           DSKNIRVWKNQ+EFSGFKSNSGLVKAI+IS EKIF+GHQDGKIRVWKVS+K+ S+HKRVG
Sbjct: 166 DSKNIRVWKNQKEFSGFKSNSGLVKAIIISGEKIFTGHQDGKIRVWKVSAKNPSVHKRVG 225

Query: 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247
           TLPTF+D+I+ SM PSNY+EVRRHRN LWIKHFDAISSLS+SED+  LYSASWDKT KVW
Sbjct: 226 TLPTFRDYIRSSMNPSNYVEVRRHRNALWIKHFDAISSLSLSEDKKFLYSASWDKTIKVW 285

Query: 248 RTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK 307
           R SD KCLESV  HDDAVN++VAGFDGLVFTGSADG+VKVWRRELQ KGTKHFFSQTLLK
Sbjct: 286 RISDSKCLESVNVHDDAVNAVVAGFDGLVFTGSADGSVKVWRRELQAKGTKHFFSQTLLK 345

Query: 308 QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFS 367
           QECAVTALA++P+A  +YCGSSDGLVNFWERE +LSHGG+LRGHKLA+LCLV AGNLVFS
Sbjct: 346 QECAVTALAVNPEATFLYCGSSDGLVNFWEREKHLSHGGILRGHKLAVLCLVAAGNLVFS 405

Query: 368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVK 427
           GSADM IC+WRR E +H CL++LTGH+GPVKCLA+E D ES + ++RWILYSGSLDKSVK
Sbjct: 406 GSADMGICVWRRLEGDHSCLAVLTGHNGPVKCLAIEDDIESTAADRRWILYSGSLDKSVK 465

Query: 428 MWRVSEQAPP---LVSTTQQHPLEG 449
           MWRVSE APP    + + ++  +EG
Sbjct: 466 MWRVSELAPPHLQQIDSIKRRQIEG 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096874|ref|XP_002310768.1| predicted protein [Populus trichocarpa] gi|222853671|gb|EEE91218.1| predicted protein [Populus trichocarpa]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/470 (68%), Positives = 368/470 (78%), Gaps = 16/470 (3%)

Query: 2   KGARGGS--RPGRIFSEENSARAQKFGRLKSSE-PMDEDFSIPYCGGNNNNTPPIYDKAF 58
           KG++ GS  R GRIF EENS    KF R+K +  P D D        +  NT    D+  
Sbjct: 4   KGSKRGSSSRGGRIFYEENSL--LKFSRIKKTNLPADND-------DDFFNTRNSQDQVV 54

Query: 59  AIAQDGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAA 118
             +   SP   +  SP  KSP S+  ++     +NDD FSPNVL+GSLVREEGHIYSLAA
Sbjct: 55  TPSNSSSPY--NIVSPVEKSPRSSQRITNIPFEDNDDNFSPNVLMGSLVREEGHIYSLAA 112

Query: 119 AGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSK 178
           +GDLLYTGSDSKNIRVWKNQ+EF GFKSNSGLVKAIVIS   IF+GHQDGKIRVWKVSSK
Sbjct: 113 SGDLLYTGSDSKNIRVWKNQKEFPGFKSNSGLVKAIVISGATIFTGHQDGKIRVWKVSSK 172

Query: 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA 238
           D SIHKRVGTLPT +D+   SMK SNYIEV+RH+N +W KH DAIS LS+SED+  LYS+
Sbjct: 173 DPSIHKRVGTLPTMRDYFNNSMKTSNYIEVKRHKNAVWYKHSDAISCLSLSEDKTFLYSS 232

Query: 239 SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK 298
           SWDKTFKVWR S+ +CLESVI+HDDAVNSIVAG DGLVFTGSADGTVKVWRRELQG GTK
Sbjct: 233 SWDKTFKVWRISNSRCLESVISHDDAVNSIVAGNDGLVFTGSADGTVKVWRRELQGTGTK 292

Query: 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL 358
           HFFSQTLLKQECAVTA+A++P+A +VYCGSSDGLVNFWERE ++SHGGVLRGHKLAILCL
Sbjct: 293 HFFSQTLLKQECAVTAVAVNPNATVVYCGSSDGLVNFWEREKHMSHGGVLRGHKLAILCL 352

Query: 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418
           VTAG+L+FSGSADM IC+WRR  N+HICLS+L GH GPVKCLA EKD ES   E+RWILY
Sbjct: 353 VTAGSLLFSGSADMGICVWRRMGNDHICLSLLAGHKGPVKCLAAEKDHESAPNERRWILY 412

Query: 419 SGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR 468
           SGSLDKSVKMWRVSE APP+    +  P       P+SLP A SF +Q R
Sbjct: 413 SGSLDKSVKMWRVSENAPPMA--WRGCPSSAPTSMPSSLPAATSFPAQTR 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468903|ref|XP_002268809.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 320/463 (69%), Positives = 372/463 (80%), Gaps = 20/463 (4%)

Query: 13  IFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSP---THN 69
           +  E NS   Q FG L  S P D+DFS      N+ ++ P    + A   D SP   T  
Sbjct: 1   MLEESNSLERQTFGNLMHSAPPDDDFSFR----NSASSAP----SPAHNGDASPYIGTWE 52

Query: 70  DSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDS 129
            +SSP++KSPWS+H   V  PSN +    PN L+GSLVREEGHIYSLA +GDLLYTGSDS
Sbjct: 53  GASSPYTKSPWSSH---VVPPSNGN--HYPNGLMGSLVREEGHIYSLATSGDLLYTGSDS 107

Query: 130 KNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL 189
           KNIRVWKNQ+EFSGFKSNSGLVKAI+IS EKIF+GHQDGKIRVWKVS+K+ S+HKRVGTL
Sbjct: 108 KNIRVWKNQKEFSGFKSNSGLVKAIIISGEKIFTGHQDGKIRVWKVSAKNPSVHKRVGTL 167

Query: 190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249
           PTF+D+I+ SM PSNY+EVRRHRN LWIKHFDAISSLS+SED+  LYSASWDKT KVWR 
Sbjct: 168 PTFRDYIRSSMNPSNYVEVRRHRNALWIKHFDAISSLSLSEDKKFLYSASWDKTIKVWRI 227

Query: 250 SDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE 309
           SD KCLESV  HDDAVN++VAGFDGLVFTGSADG+VKVWRRELQ KGTKHFFSQTLLKQE
Sbjct: 228 SDSKCLESVNVHDDAVNAVVAGFDGLVFTGSADGSVKVWRRELQAKGTKHFFSQTLLKQE 287

Query: 310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS 369
           CAVTALA++P+A  +YCGSSDGLVNFWERE +LSHGG+LRGHKLA+LCLV AGNLVFSGS
Sbjct: 288 CAVTALAVNPEATFLYCGSSDGLVNFWEREKHLSHGGILRGHKLAVLCLVAAGNLVFSGS 347

Query: 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
           ADM IC+WRR E +H CL++LTGH+GPVKCLA+E D ES + ++RWILYSGSLDKSVKMW
Sbjct: 348 ADMGICVWRRLEGDHSCLAVLTGHNGPVKCLAIEDDIESTAADRRWILYSGSLDKSVKMW 407

Query: 430 RVSEQAPP---LVSTTQQHPLEG-HGVAPNSLPYAPSFSSQGR 468
           RVSE APP    + + ++  +EG    +P+    + SFS QGR
Sbjct: 408 RVSELAPPHLQQIDSIKRRQIEGLSSPSPSPSTQSQSFSPQGR 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460666|ref|XP_004148066.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 302/437 (69%), Positives = 353/437 (80%), Gaps = 24/437 (5%)

Query: 46  NNNNTPPI-YDKAFAIAQ----------DGSPTHN----DSSSPFSKSPWSTHHVS--VP 88
           +N+N PP     A A A           D  P H+     S+SPF+KSPWS+H  S  +P
Sbjct: 35  DNSNIPPFPSSTATATADQPIFRPSMDTDPDPEHSFFEPASTSPFTKSPWSSHFNSDALP 94

Query: 89  TPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNS 148
           +P++N   F PN+L+GSLVREEGHIYSLAA+ DLLYTGSDSKNIRVWKN +EFSGFKSNS
Sbjct: 95  SPADNT-SFLPNILMGSLVREEGHIYSLAASRDLLYTGSDSKNIRVWKNHKEFSGFKSNS 153

Query: 149 GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           GLVK+IVI   KIF+GHQDGK+RVWK+SS+D S+HKRVGTLPT  D+IKCSM+PSNY+E 
Sbjct: 154 GLVKSIVIGGGKIFTGHQDGKVRVWKISSRDPSVHKRVGTLPTLGDYIKCSMRPSNYVEG 213

Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
           RR RN LWIKHFDAISSLS+SEDQ  LYSASWDKTFKVWR SD KCLES+ AH+DAVN++
Sbjct: 214 RRRRN-LWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWRVSDSKCLESIEAHEDAVNTL 272

Query: 269 VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328
           V+  DG+V+TGSADG+VKVWRRELQGKGTKHFFSQTL+KQECAVTALA++ DA  VYCGS
Sbjct: 273 VSSIDGMVYTGSADGSVKVWRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGS 332

Query: 329 SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLS 388
           SDG+VNFWERE +LSHGGVLRGHKLAILCL TAG+L+ SGSADM IC+W+R  ++H CLS
Sbjct: 333 SDGVVNFWEREKSLSHGGVLRGHKLAILCLATAGHLLLSGSADMGICVWQRIASDHFCLS 392

Query: 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLE 448
           +LTGH+GPVKCLAVEKD+E    E+RWI+YSGSLDKSVKMWRVSEQ P   ST Q+ P  
Sbjct: 393 VLTGHTGPVKCLAVEKDNEVSEGERRWIVYSGSLDKSVKMWRVSEQPP---STFQRSPSF 449

Query: 449 GHGVAPNS--LPYAPSF 463
               +P +  L  APSF
Sbjct: 450 IPECSPTAGLLVNAPSF 466

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510309|ref|XP_004163628.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/409 (71%), Positives = 344/409 (84%), Gaps = 13/409 (3%)

Query: 63  DGSPTHN----DSSSPFSKSPWSTHHVS--VPTPSNNDDGFSPNVLIGSLVREEGHIYSL 116
           D  P H+     S+SPF+KSPWS+H  S  +P+P++N   F PN+L+GSLVREEGHIYSL
Sbjct: 4   DPDPEHSFFEPASTSPFTKSPWSSHFNSDALPSPADNT-SFLPNILMGSLVREEGHIYSL 62

Query: 117 AAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVS 176
           AA+ DLLYTGSDSKNIRVWKN +EFSGFKSNSGLVK+IVI   KIF+GHQDGK+RVWK+S
Sbjct: 63  AASRDLLYTGSDSKNIRVWKNHKEFSGFKSNSGLVKSIVIGGGKIFTGHQDGKVRVWKIS 122

Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
           S+D S+HKRVGTLPT  D+IKCSM+PSNY+E RR RN LWIKHFDAISSLS+SEDQ  LY
Sbjct: 123 SRDPSVHKRVGTLPTLGDYIKCSMRPSNYVEGRRRRN-LWIKHFDAISSLSLSEDQAFLY 181

Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG 296
           SASWDKTFKVWR SD KCLES+ AH+DAVN++V+  DG+V+TGSADG+VK+WRRELQGKG
Sbjct: 182 SASWDKTFKVWRVSDSKCLESIEAHEDAVNTLVSSIDGMVYTGSADGSVKLWRRELQGKG 241

Query: 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL 356
           TKHFFSQTL+KQECAVTALA++ DA  VYCGSSDG+VNFWERE +LSHGGVLRGHKLAIL
Sbjct: 242 TKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDGVVNFWEREKSLSHGGVLRGHKLAIL 301

Query: 357 CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWI 416
           CL TAG+L+ SGSADM IC+W+R  ++H CLS+LTGH+GPVKCLAVEKD+E    E+RWI
Sbjct: 302 CLATAGHLLLSGSADMGICVWQRIASDHFCLSVLTGHTGPVKCLAVEKDNEVSEGERRWI 361

Query: 417 LYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS--LPYAPSF 463
           +YSGSLDKSVKMWRVSEQ P   ST Q+ P      +P +  L  APSF
Sbjct: 362 VYSGSLDKSVKMWRVSEQPP---STFQRSPSFIPECSPTAGLLVNAPSF 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483119|ref|XP_003611846.1| Guanine nucleotide-binding protein subunit beta-like protein [Medicago truncatula] gi|355513181|gb|AES94804.1| Guanine nucleotide-binding protein subunit beta-like protein [Medicago truncatula]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/451 (64%), Positives = 349/451 (77%), Gaps = 29/451 (6%)

Query: 6   GGSRPGRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTP----PIYDKAF--- 58
           G SR G  F +E S   ++FG+LK  E         + G N++N P    PI        
Sbjct: 3   GSSRKGHTFLDEGSVHGRRFGKLKKDE---------FDGYNSDNHPRKNSPIKTTDAPHL 53

Query: 59  --AIAQDGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSL 116
              +A D SP ++ S SP SKSPW   HV      N +   S   L+GSLVREEGHIYSL
Sbjct: 54  DPQMASDNSP-YDASLSPLSKSPW---HV------NEEASSSEEALVGSLVREEGHIYSL 103

Query: 117 AAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVS 176
           AA  DLLYTGSDSKNIRVWKNQ+EF+GFKSNSGLVKAIVI+ EKI +GHQDG+IRVW+VS
Sbjct: 104 AATKDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWRVS 163

Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
           +K+   ++R  TLPT +++IKCSMKPSNY+EVRRHRN LWIKH+DAIS LS++ED +L+Y
Sbjct: 164 NKNEQTYRRAATLPTLRNYIKCSMKPSNYVEVRRHRNVLWIKHYDAISCLSLTEDLSLIY 223

Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG 296
           SASWDKTFKVWR S+YKCLESV AHDDAVN++V GFDGLVFTGSADGTVK+WRRE+QGKG
Sbjct: 224 SASWDKTFKVWRASNYKCLESVTAHDDAVNALVVGFDGLVFTGSADGTVKIWRREMQGKG 283

Query: 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL 356
           TKHFFSQTLLKQECAVTAL ++ D   +Y GSSDGLVN+W RE NL H G+LRGHKLA+L
Sbjct: 284 TKHFFSQTLLKQECAVTALTLNSDGTFLYAGSSDGLVNYWVRETNLEHCGILRGHKLAVL 343

Query: 357 CLVTAGNLVFSGSADMSICIWRRK-ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415
           CLV AG+LVFSGSADM+IC+W+R   NEH+C+S+L+GH+GPVKCLA EKD + +  E++W
Sbjct: 344 CLVAAGSLVFSGSADMAICVWKRSITNEHVCMSVLSGHTGPVKCLAAEKDLDVMLHERKW 403

Query: 416 ILYSGSLDKSVKMWRVSEQAPPLVSTTQQHP 446
           ILYSGSLDKSVK+W+V E APP   T QQ P
Sbjct: 404 ILYSGSLDKSVKVWKVKENAPPGQQTHQQAP 434

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081527|ref|XP_002306446.1| predicted protein [Populus trichocarpa] gi|222855895|gb|EEE93442.1| predicted protein [Populus trichocarpa]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 271/337 (80%), Positives = 307/337 (91%)

Query: 102 LIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKI 161
           L+GSLVREEGHIYSLA +GDLLYTGSDSKNIRVW+NQ+EF+GFKSNSGLVKAIVIS E+I
Sbjct: 1   LMGSLVREEGHIYSLATSGDLLYTGSDSKNIRVWRNQKEFAGFKSNSGLVKAIVISGERI 60

Query: 162 FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221
           F+GHQDGKIRVWKVSSKD S+HKRVGTLPT KD+IK SMK  NY EVRRH+N +W +H+D
Sbjct: 61  FTGHQDGKIRVWKVSSKDPSVHKRVGTLPTMKDYIKNSMKTGNYFEVRRHKNSVWFRHYD 120

Query: 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA 281
           AIS LS+SED+  LYS+SWDKTFKVWR S+ +C+ESVIAHDD+VNSIVAG+DGLVFTGSA
Sbjct: 121 AISCLSLSEDKTFLYSSSWDKTFKVWRISNSRCIESVIAHDDSVNSIVAGYDGLVFTGSA 180

Query: 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341
           DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA+A++PD  +VYCGSSDGLVNFW RE +
Sbjct: 181 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAVAVNPDTTVVYCGSSDGLVNFWGRENH 240

Query: 342 LSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA 401
           LSHGGVLRGHKLA+LCL+TAGNLV SGSADM IC+WRR   +H CLS+LTGH+GPVKCLA
Sbjct: 241 LSHGGVLRGHKLAVLCLITAGNLVLSGSADMGICVWRRMGIDHTCLSLLTGHNGPVKCLA 300

Query: 402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438
            E+DDES S  +RWILYSGSLDKSVKMWRVSE +PP+
Sbjct: 301 AERDDESTSNGRRWILYSGSLDKSVKMWRVSENSPPM 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562735|ref|XP_002522373.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223538451|gb|EEF40057.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/370 (73%), Positives = 321/370 (86%), Gaps = 3/370 (0%)

Query: 72  SSPFSKSPWSTH---HVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSD 128
           +SP SKSPWS+H    +      NND  FS NVL+GSLVREEGHIYSLAA+ +LLYTGS 
Sbjct: 62  ASPISKSPWSSHANLDLDQDLHDNNDQEFSHNVLMGSLVREEGHIYSLAASQELLYTGSA 121

Query: 129 SKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGT 188
           SKNIRVWKNQ+EFSGFKSNSGLVKAIVI +++IF+GHQDGKIR+WKVS+K+ S+++RVG+
Sbjct: 122 SKNIRVWKNQKEFSGFKSNSGLVKAIVIGDDQIFTGHQDGKIRIWKVSTKNPSVYRRVGS 181

Query: 189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR 248
           LP FKD++K SMKPSNY+EVRR++N +W+KHFDAIS LS++ED++LLYSASWDKTFK+WR
Sbjct: 182 LPKFKDYVKSSMKPSNYVEVRRNKNTIWLKHFDAISCLSLNEDKSLLYSASWDKTFKIWR 241

Query: 249 TSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ 308
            SD KCLESV AHDDAVNS+V G DGLVFTGSADGTVKVWRRE QGKGTKHFFSQTLLKQ
Sbjct: 242 ISDSKCLESVAAHDDAVNSLVTGLDGLVFTGSADGTVKVWRRETQGKGTKHFFSQTLLKQ 301

Query: 309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368
           + AVTAL I+P++ I+Y GSSD LVN+W ++  L+HGG+L+GHKLA+LCL TAG+LVFSG
Sbjct: 302 DSAVTALTINPESTIIYSGSSDALVNYWLKDKQLAHGGILKGHKLAVLCLATAGSLVFSG 361

Query: 369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428
           SADM IC+WRR   +HICLS+LTGH+GPVKCLA EKD E  S E RWILYSGSLDKSVKM
Sbjct: 362 SADMGICVWRRLGADHICLSLLTGHTGPVKCLATEKDQELTSGEARWILYSGSLDKSVKM 421

Query: 429 WRVSEQAPPL 438
           WRVSE  PP+
Sbjct: 422 WRVSENTPPV 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540707|ref|XP_003538827.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Glycine max]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/443 (64%), Positives = 345/443 (77%), Gaps = 31/443 (6%)

Query: 6   GGSRPGRIFSEENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNN-----TPPIYDKAFAI 60
           G SR GR + +E S   + +G+LK  E         + G N++N      P   D     
Sbjct: 3   GSSRKGRGYLDEGSVNGRMYGKLKKDE---------FDGYNSDNHQRKNNPITMDAPHLD 53

Query: 61  AQ---DGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFS----PNVLIGSLVREEGHI 113
            Q   D +P ++ S SP SKSPWS+H         N+D F+     + L+GSLVREEGHI
Sbjct: 54  PQMEADNAP-YDASLSPLSKSPWSSHM--------NEDAFAGSNENDALVGSLVREEGHI 104

Query: 114 YSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVW 173
           YSLAA  DLLYTGSDSKNIRVWKNQ EF+GFKSNSGLVKAIVI+ EKI +GHQDG+IRVW
Sbjct: 105 YSLAATKDLLYTGSDSKNIRVWKNQEEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVW 164

Query: 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN 233
           KVS K+   HKRV TLPT +++IKCSMKPSNY+EVRR RN +WIKH+DAIS LS++ED +
Sbjct: 165 KVSGKNDQQHKRVATLPTLRNYIKCSMKPSNYVEVRRRRNLIWIKHYDAISCLSLTEDHS 224

Query: 234 LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQ 293
           L+YSASWDKTFKVWRTS++KCLESV AHDDAVN++V G DG+VFTGSADGTVK+WRRE+Q
Sbjct: 225 LIYSASWDKTFKVWRTSNFKCLESVTAHDDAVNALVVGLDGMVFTGSADGTVKIWRREVQ 284

Query: 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL 353
           GKGTKH FSQTLLKQECAVTALAI+ +  ++Y GSSDGLVN+W RE NL H GVLRGHKL
Sbjct: 285 GKGTKHLFSQTLLKQECAVTALAINEEGNVLYAGSSDGLVNYWVRETNLEHKGVLRGHKL 344

Query: 354 AILCLVTAGNLVFSGSADMSICIWRRKEN-EHICLSMLTGHSGPVKCLAVEKDDESLSRE 412
           A+LCL TAG+LVFSGSADM+IC+W+R  N +H C+++L+GH+GPVKCLA E+D E++  E
Sbjct: 345 AVLCLATAGSLVFSGSADMAICVWKRSLNDDHTCVNILSGHTGPVKCLAAERDPEAMCNE 404

Query: 413 KRWILYSGSLDKSVKMWRVSEQA 435
           +RWILYSGSLDKSVK+W+VSE A
Sbjct: 405 RRWILYSGSLDKSVKVWKVSENA 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496834|ref|XP_003517270.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Glycine max]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 283/443 (63%), Positives = 341/443 (76%), Gaps = 25/443 (5%)

Query: 16  EENSARAQKFGRLKSSEPMDEDFSIPYCGGNNNNTPPIYDKAFAIAQDGSPTHNDSSSPF 75
           +E S   +K+G+LK  E  D   S  +   NN  T         +  D +P ++ S SP 
Sbjct: 2   DEGSIHGRKYGKLKKDE-FDGYNSDSHPRKNNPITLDAPHLDPQMEADNAP-YDPSLSPL 59

Query: 76  SKSPWSTHHVSVPTPSNNDDGFS----PNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKN 131
           SKSPWS+H         NDD FS     + L+GSLVREEGHIYSLAA  DLLYTGSDSKN
Sbjct: 60  SKSPWSSH--------TNDDAFSGSNENDALVGSLVREEGHIYSLAATKDLLYTGSDSKN 111

Query: 132 IRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT 191
           IRVWKNQ+EF+GFKSNSGLVKAIVI+ EKI +GHQDG+IRVWKVS K+   HKRV TLPT
Sbjct: 112 IRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNEQQHKRVATLPT 171

Query: 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251
            +++IKCSMKPSNY+EVRRHRN +WIKH+DAIS LS++ED +L+YSASWDKTFKVWRTS+
Sbjct: 172 LRNYIKCSMKPSNYVEVRRHRNVIWIKHYDAISCLSLTEDHSLIYSASWDKTFKVWRTSN 231

Query: 252 YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311
           +KCLESV AHDDAVN++V G +G+VFTGSADGTVK+WRRE+QGKGTKHFFSQTLLKQECA
Sbjct: 232 FKCLESVKAHDDAVNALVVGLNGMVFTGSADGTVKIWRREVQGKGTKHFFSQTLLKQECA 291

Query: 312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
           VT+LAI+ +  ++Y GSS+GLVN+W  E NL H GVLRGHKLA+LCL  AG+LVFSGSAD
Sbjct: 292 VTSLAINEEGNVLYAGSSEGLVNYWVHETNLEHKGVLRGHKLAVLCLAAAGSLVFSGSAD 351

Query: 372 MSICIWRRK-ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
           M+IC+W+R    EH C+ +L+GH+GPVKCLA EKD E++  E+RWILYSGSLDKSVK+W+
Sbjct: 352 MAICVWKRTLSEEHTCVKILSGHTGPVKCLAAEKDPEAMCNERRWILYSGSLDKSVKVWK 411

Query: 431 VSE----------QAPPLVSTTQ 443
           VSE            PP +S  Q
Sbjct: 412 VSENINAGAQNNNHQPPRLSVDQ 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
TAIR|locus:2074825	469	AT3G50390 "AT3G50390" [Arabido	0.824	0.833	0.663	5.9e-144
TAIR|locus:2066276	465	AT2G26490 "AT2G26490" [Arabido	0.791	0.806	0.658	3.4e-132
TAIR|locus:2116194	495	AT4G34380 "AT4G34380" [Arabido	0.723	0.692	0.648	1e-123
TAIR|locus:2085929	473	AT3G18950 "AT3G18950" [Arabido	0.736	0.737	0.624	3.6e-121
TAIR|locus:2010157	471	AT1G49450 "AT1G49450" [Arabido	0.900	0.906	0.513	1.8e-117
TAIR|locus:2015423	351	AT1G47610 "AT1G47610" [Arabido	0.700	0.945	0.642	2.5e-113
TAIR|locus:2032452	415	AT1G24130 "AT1G24130" [Arabido	0.687	0.785	0.466	3.5e-75
TAIR|locus:2170061	388	AT5G50120 "AT5G50120" [Arabido	0.609	0.744	0.414	1.4e-74
TAIR|locus:2083710	415	AT3G51930 "AT3G51930" [Arabido	0.668	0.763	0.425	4.5e-66
TAIR|locus:2024031	418	AT1G24530 "AT1G24530" [Arabido	0.605	0.686	0.443	3.3e-63

TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1407 (500.3 bits), Expect = 5.9e-144, P = 5.9e-144
 Identities = 266/401 (66%), Positives = 326/401 (81%)

Query:    83 HHVSVPTPSNNDDG--FSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQRE 140
             H V V T +  +     SPN+L+GSLVREEGHIYSLA +GDLLYTGSDSKNIRVWKN  E
Sbjct:    69 HSVKVTTDTTKEKSTNHSPNILLGSLVREEGHIYSLATSGDLLYTGSDSKNIRVWKNHVE 128

Query:   141 FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSM 200
             FS FKSNSGLVKAIV++ +KIF+GHQDGKIRVWK +SK++++H+RVGT+P   D+I+ S+
Sbjct:   129 FSSFKSNSGLVKAIVLAGDKIFTGHQDGKIRVWKAASKESNVHRRVGTMPNLLDYIRNSI 188

Query:   201 KPSNYIE-VRRHRNG--LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
              PS+Y    RR+R+   L  +H DAIS L++SED+ LLYS SWDKTFKVWR SD +C+ES
Sbjct:   189 VPSSYFNFTRRNRSSAALGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVES 248

Query:   258 VIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI 317
             V AH+DAVN++V+GFDGLVFTGSADGTVKVWRRE Q K TKHFFS+TLLKQ+CAVTA+A+
Sbjct:   249 VNAHEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFSETLLKQDCAVTAIAV 308

Query:   318 SPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIW 377
                A +VYCGSSDG VNFWERE N+ +GGVL+GHKLA+LCLV AGNL+FSGSAD+ I +W
Sbjct:   309 DQSATLVYCGSSDGTVNFWERENNMKNGGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVW 368

Query:   378 RRKEN--EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435
             RR E   EH+CLS+LTGH+GPVKCLAVE+D ES+S E+RWI+YSGSLD+SVKMWRVSE +
Sbjct:   369 RRPEGGGEHVCLSVLTGHAGPVKCLAVERDQESVSGERRWIVYSGSLDRSVKMWRVSESS 428

Query:   436 PPLVSTTQQHPLE---GHGVAPNSLPYAPSFSSQGRICQKR 473
             PP+V+   + P +   G G  P  L  APSFS+QGRI  ++
Sbjct:   429 PPMVNQEFKLPDQFGGGGGGGPAELTVAPSFSAQGRISPQK 469

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 249/378 (65%), Positives = 296/378 (78%)

Query:    91 SNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGL 150
             S  ++    N LIGSLVREEGHIYSLAA  DLLYTGSDSKNIRVWKN +EFS FK NSGL
Sbjct:    77 STVEENLPQNGLIGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNLKEFSAFKCNSGL 136

Query:   151 VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR 210
             VKAIVIS EKIF+GHQDGKIRVWKVS K+ S+HKR GTLPT KD  K S+KP NY+EV++
Sbjct:   137 VKAIVISGEKIFTGHQDGKIRVWKVSPKNQSLHKRSGTLPTLKDIFKASLKPRNYVEVKK 196

Query:   211 HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA 270
             HR  LWIKH DA+S LS++++Q LLYSASWD+T KVWR +D KCLES+ AHDDAVNS+V+
Sbjct:   197 HRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSVVS 256

Query:   271 GFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD 330
               + +VF+GSADGTVK W+R+ QGK TKH   QTL KQE AVTALA+S + A VY GSSD
Sbjct:   257 TTEAIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSD 316

Query:   331 GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
             GLVNFWERE  L++GG+L+GHKLA+LCL  AG+LVFSGSAD +IC+W+R  N H CLS+L
Sbjct:   317 GLVNFWEREKQLNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKRDGNIHTCLSVL 376

Query:   391 TGHSGPVKCLAVEKDDE-SLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG 449
             TGH+GPVKCLAVE D E S  R+K+WI+YSGSLDKSVK+W VSE    +   +     + 
Sbjct:   377 TGHTGPVKCLAVEADREASERRDKKWIVYSGSLDKSVKVWGVSESFIDMNQMSMMQQQQQ 436

Query:   450 HGVAPNSLPYAP--SFSS 465
               V  +S P+    SFSS
Sbjct:   437 QHVISHSEPFMSDGSFSS 454

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
 Identities = 229/353 (64%), Positives = 283/353 (80%)

Query:    92 NNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLV 151
             N D+    N LIGS+VR+EGHIYSLAA+GDLLYTGSDSKNIRVWKN +E +GFKS+SGL+
Sbjct:   107 NEDNVLETNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEHAGFKSSSGLI 166

Query:   152 KAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRH 211
             KAIVI  ++IF+GHQDGKIR+WKVS +    HKRVGTLPTFK  +K S+ P +++EVRR+
Sbjct:   167 KAIVIFGDRIFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRN 226

Query:   212 RNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG 271
             RN +  KH DA+SSLS+  +  LLYS+SWD T KVWR +D KCLES+ AHDDA+NS+++G
Sbjct:   227 RNSVKTKHNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSG 286

Query:   272 FDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331
             FD LVFTGSADGTVKVW+RELQGKGTKH  +Q LLKQE AVTALA+   ++IVYCGSSDG
Sbjct:   287 FDDLVFTGSADGTVKVWKRELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDG 346

Query:   332 LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRR--KENEHICLSM 389
             LVN+WER      GG+L+GHK A+LCL  AGNL+ SGSAD +IC+WRR   +  H CLS+
Sbjct:   347 LVNYWERSKRSFTGGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSV 406

Query:   390 LTGHSGPVKCLAVEKD-------DESLSR-EKRWILYSGSLDKSVKMWRVSEQ 434
             LTGH GPVKCLAVE++         S++  +++WI+YSGSLDKSVK+WRVSE+
Sbjct:   407 LTGHMGPVKCLAVEEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVWRVSER 459

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 221/354 (62%), Positives = 280/354 (79%)

Query:    91 SNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGL 150
             + N D  + N LIG++VR++GH+YSLAA+GDLL+TGSDSKNIRVWK+ ++ +GFKS SGL
Sbjct:   119 TRNIDDDTDNGLIGTIVRQDGHVYSLAASGDLLFTGSDSKNIRVWKDLKDHTGFKSTSGL 178

Query:   151 VKAIVISNE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR 209
             VKAIVI+ + +IF+GHQDGKIRVW+ S +    + R+G+LPT K+F+  S+ P NY+EVR
Sbjct:   179 VKAIVITGDNRIFTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVR 238

Query:   210 RHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV 269
             R +N L I+H+DA+S LS++E+  LLYS SWDKT KVWR SD KCLES+ AHDDA+N++ 
Sbjct:   239 RRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTVA 298

Query:   270 AGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS 329
             AGFD L+FTGSADGT+KVW+RELQGKGTKHF    L+KQE AVTALA++  AA+VYCGSS
Sbjct:   299 AGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNITAAVVYCGSS 358

Query:   330 DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK-ENEHICLS 388
             DG VNFWE +  LSHGG LRGH+LA+LCL  AG+LV SG AD +IC+WRR  +  H CLS
Sbjct:   359 DGTVNFWEGQKYLSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGDGSHSCLS 418

Query:   389 MLTGHSGPVKCLAVEKDDESLSREK---RWILYSGSLDKSVKMWRVSEQAPPLV 439
             +L  H GPVKCL   +DD    REK   +WI+YSGSLDKSVK+WRV+E A  ++
Sbjct:   419 VLMDHVGPVKCLTAVEDDGEGHREKGDQKWIVYSGSLDKSVKVWRVTESASTVI 472

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 230/448 (51%), Positives = 312/448 (69%)

Query:     9 RPGRIFSEENSARAQKFGRLKSSEPMDEDFSIPY--CGGNNNNTPPIY-----DKAFAIA 61
             + G + +EE +  +      +S+   + D   P      +++++ PIY     ++ +  +
Sbjct:    23 KSGSLAAEEETYHSDGDHHNQSTFSSNSDSQRPSNASSASSDSSSPIYPLSPWNQTYYPS 82

Query:    62 QDGSPTHNDXXXXXXXXXXXTHHVS--VPTPSNNDDGFSP-NVLIGSLVREEGHIYSLAA 118
              D + + +             +H S  +    N+D    P N LIG++VR+EGH+YSLAA
Sbjct:    83 NDNTTSFSSVTQSPWNQTYSPYHKSPWIYQTRNSDFEDDPDNGLIGTVVRQEGHVYSLAA 142

Query:   119 AGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNE-KIFSGHQDGKIRVWKVSS 177
             +GDLL+TGSDSKNIRVWK+ ++FSGFKS SG VKAIV++ + ++F+GHQDGKIRVW+ S 
Sbjct:   143 SGDLLFTGSDSKNIRVWKDLKDFSGFKSTSGFVKAIVVTRDNRVFTGHQDGKIRVWRGSK 202

Query:   178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237
             K+   + RVG+LPT K+F+  S+ P NY+EVRR +N L I+HFDA+S LS++ED  LLYS
Sbjct:   203 KNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSLNEDLGLLYS 262

Query:   238 ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT 297
              SWDKT KVWR SD KCLES+ AHDDAVN++V+GFD LVFTGSADGT+KVW+RE+QGK  
Sbjct:   263 GSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREVQGKEM 322

Query:   298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC 357
             KH   Q L+KQE AVTALA++   A+VYCGSSDG VNFWER+  L+H G + GH++A+LC
Sbjct:   323 KHVLVQVLMKQENAVTALAVNLTDAVVYCGSSDGTVNFWERQKYLTHKGTIHGHRMAVLC 382

Query:   358 LVTAGNLVFSGSADMSICIWRRK-ENEHICLSMLTGHSGPVKCLA-VEK--------DDE 407
             L TAG+L+ SG AD +IC+W+R  +  H CLS+L  H GPVKCLA VE+        DD 
Sbjct:   383 LATAGSLLLSGGADKNICVWKRNGDGSHTCLSVLMDHEGPVKCLAAVEEAEEDHNDGDDG 442

Query:   408 SLSREKRWILYSGSLDKSVKMWRVSEQA 435
                 ++RWI+YSGSLD SVK+WRV++ A
Sbjct:   443 GEKGDQRWIVYSGSLDNSVKVWRVTDYA 470

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 221/344 (64%), Positives = 264/344 (76%)

Query:    96 GFSP-NVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAI 154
             G+S  + L+G +VREEGHIYSLAA  DLLYTGSD+  IRVWKN  EFSGFKSNSGLVKAI
Sbjct:     9 GYSDGDSLVGEIVREEGHIYSLAATNDLLYTGSDNNYIRVWKNLNEFSGFKSNSGLVKAI 68

Query:   155 VISNE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRN 213
             VIS E K+F+GHQDGKIRVWK SSK+  ++ R G+LP  KD +K S+KPSNY+EVRR R 
Sbjct:    69 VISREAKVFTGHQDGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRT 128

Query:   214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD 273
              LWIKH DA+S LS++EDQ LLYSASWD+T KVWR  D KC+ES+ AHDDAVNS+    +
Sbjct:   129 ALWIKHSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTA-E 187

Query:   274 GLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333
              LVFTGSADGTVKVW+RE++GK T H   QTLLKQE AVTAL  S  A  VY GSSDG V
Sbjct:   188 SLVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALVTSHMA--VYSGSSDGAV 245

Query:   334 NFWE---RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
             NFWE   ++L L H  V + H+LA+LC+  AG L+FSG+AD  IC+WRR+   H C+S+L
Sbjct:   246 NFWEMGDKKL-LKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRREGKVHTCVSVL 304

Query:   391 TGHSGPVKCLAVEKD---DESLSREKRWILYSGSLDKSVKMWRV 431
             TGH+GPVKCLAV +    +E    + R +LYSGSLDKSVK+WRV
Sbjct:   305 TGHTGPVKCLAVVEPSGGEEEDGGDGRLVLYSGSLDKSVKVWRV 348

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 166/356 (46%), Positives = 224/356 (62%)

Query:   103 IGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFS-----GFKSN-----SGLVK 152
             + +L  +  ++ SLA +  LLYTGS +  IRVW  +  FS     G   N     +G VK
Sbjct:    62 LATLKDKSSYVSSLAVSDKLLYTGSSNSEIRVWPREPPFSPEYSTGDDRNVVANGNGGVK 121

Query:   153 AIVISNEKIFSGHQDGKIRVWKV---SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR 209
             ++VI  +K+ S HQD KIRVWK+   S++    +K V TLPT  D  K      +Y+EVR
Sbjct:   122 SLVILGDKLISAHQDHKIRVWKIIDESNRRGQKYKCVATLPTMNDRFKTLFSSKSYVEVR 181

Query:   210 RHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSI 268
             RH+   W+ H DA+SSL++S+D +LLYSASWD++FK+WRTSD+KCL+S+  AHDDA+N+I
Sbjct:   182 RHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAI 241

Query:   269 VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328
             V   DG V+TGSAD  +KVW +    K  KH    TL K   AV ALAIS D  ++Y G+
Sbjct:   242 VVSKDGFVYTGSADKKIKVWNK----KDKKHSLVATLTKHLSAVNALAISEDGKVLYSGA 297

Query:   329 SDGLVNFWER-------ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRR-- 379
              D  +  WER       EL++S  G LRGH+ AI+CL  A +LV SGSAD S+ +WRR  
Sbjct:   298 CDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVASDLVLSGSADKSLRVWRRGL 357

Query:   380 KENE-HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW--RVS 432
              E E + CL++L GH+ PVK LAV   D   + +   ++YSGSLD S+K+W  RVS
Sbjct:   358 MEKEGYSCLAVLEGHTKPVKSLAVSVSDSDSNSDYSCMVYSGSLDLSLKVWNLRVS 413

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 126/304 (41%), Positives = 189/304 (62%)

Query:   142 SGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSS---KDASIHK--RVGTLPTFKD-F 195
             +G +   G VK++VI  +K+F+ HQD KIRVWK++    +D    K   + T+PT  D F
Sbjct:    82 TGERGGGGAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRF 141

Query:   196 IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL 255
              KC M P N +E+RRH+   W+ H DA+S L++S D  LLYS SWD+T K+WRT+D+KCL
Sbjct:   142 AKCLM-PKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCL 200

Query:   256 ESVI-AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG----KGTKHFFSQTLLKQEC 310
             ES   AHDDA+N++    +G ++TGS+D  +KVWR+ +      K  KH     L +   
Sbjct:   201 ESFTNAHDDAINAVALSENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNS 260

Query:   311 AVTALAIS-PDAAIVYCGSSDGLVNFWEREL--NLSHGGVLRGHKLAILCLVTAGNLVFS 367
              + ALA+S  + ++++ G SDG +  WER+   ++   G+LRGH  ++LCL    +++ S
Sbjct:   261 GINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSDILCS 320

Query:   368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVK 427
             GSAD ++ +W+    ++ CL+ML GH GPVKCL     D   + E  + +YSG LD  VK
Sbjct:   321 GSADKTVRLWKCSAKDYSCLAMLEGHLGPVKCLTGAFRDSRKADEASYHIYSGGLDSQVK 380

Query:   428 MWRV 431
             +W+V
Sbjct:   381 VWQV 384

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 146/343 (42%), Positives = 208/343 (60%)

Query:   111 GHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDG 168
             G + SLA  G+ L + S  K+I VW+    + F+ F    G VKA+V    K+F+ HQD 
Sbjct:    62 GSVSSLALCGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVSVGSKVFTAHQDS 121

Query:   169 KIRVWKVSSKDA-SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS 227
             +IRVWKVS +++ +  + V TLPT KD++   MK SNY++ RR+   LWI+H D+IS L+
Sbjct:   122 RIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWIEHADSISCLA 181

Query:   228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKV 287
             +     ++YS SWDKT KVWR SD KCLES+ AHDDA+N +VAG DG V++ SADG VK+
Sbjct:   182 VHA--GIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAG-DGRVYSASADGKVKI 238

Query:   288 W----RRELQGKGTK----HFFSQTLL-KQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
             W    R++++   +     H    TL  + E +V ++ +S D   VY G SDG V  WE+
Sbjct:   239 WGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDGFVIGWEK 298

Query:   339 ---ELNLSH---GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC-LSMLT 391
                E +      G   RGH +A+LC+   G +V SGSAD SI +WRR+    +C   ++ 
Sbjct:   299 KEKEGDFEEWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGVIH 358

Query:   392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434
             GH GPVKCL    ++        ++LYSG LDKS+++W V +Q
Sbjct:   359 GHEGPVKCLQASPNNVGAG----FMLYSGGLDKSLRVWWVPKQ 397

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 133/300 (44%), Positives = 191/300 (63%)

Query:   141 FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSM 200
             F+G    SG VK++  S EKIF+ HQDGKI VWK+++K    +K++ TLPT  D ++   
Sbjct:   118 FNGQDPFSGTVKSVGFSGEKIFTAHQDGKIGVWKLTAKSG--YKQLTTLPTLNDRLRRFA 175

Query:   201 KPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA 260
              P NY++VRRH+  LWI+H DA+++L++S+    +YS SWDKT K+WR SD +C ES+ A
Sbjct:   176 LPKNYVQVRRHKKRLWIEHADAVTALAVSD--GFIYSVSWDKTLKIWRASDLRCKESIKA 233

Query:   261 HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD 320
             HDDAVN+I    +G V+TGSAD  ++VW +    K  +H    TL K + AV ALA++ D
Sbjct:   234 HDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEK--RHTLVATLEKHKSAVNALALNDD 291

Query:   321 AAIVYCGSSDGLVNFWERELNLSH---GGVLRGHKLAILCLVTAGNLVFSGSADMSICIW 377
              ++++ GS D  +  WERE   ++    G LRGH  AIL L    +L+ SGSAD ++ IW
Sbjct:   292 GSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSADRTVRIW 351

Query:   378 RR-KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436
             RR  ++ + CL +L+GH+ PVK LA  ++ E    +    + SGSLD  VK W+VS   P
Sbjct:   352 RRGPDSSYSCLEVLSGHTKPVKSLAAVREKEL---DDVVSIISGSLDGEVKCWKVSVTKP 408

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00013153001	SubName- Full=Chromosome undetermined scaffold_444, whole genome shotgun sequence; (459 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018072001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (326 aa)			•						0.500
	GSVIVG00015929001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (340 aa)			•						0.496
	GSVIVG00032589001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (331 aa)			•						0.495
	GSVIVG00034114001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (299 aa)			•						0.494
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.491
	GSVIVG00003077001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (350 aa)			•						0.491
	GSVIVG00014166001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (333 aa)			•						0.476
	GSVIVG00014488001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa)			•						0.472
	GSVIVG00010426001	SubName- Full=Chromosome undetermined scaffold_261, whole genome shotgun sequence; Flags- Fragm [...] (130 aa)			•						0.467
	GSVIVG00001955001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (312 aa)			•						0.466

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	474
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-44
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  156 bits (397), Expect = 2e-44
 Identities = 94/333 (28%), Positives = 141/333 (42%), Gaps = 61/333 (18%)

Query: 110 EGH---IYSLA--AAGDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVIS--NEK 160
           +GH   +  +A    G LL TGS    I+VW  +        K ++G V+ +  S     
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220
           + SG  D  IR+W + +      + V TL                             H 
Sbjct: 66  LASGSSDKTIRLWDLETG-----ECVRTL---------------------------TGHT 93

Query: 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVFTG 279
             +SS++ S D  +L S+S DKT KVW     KCL ++  H D VNS+  +     V + 
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 280 SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
           S DGT+K+W               TL      V ++A SPD   +   SSDG +  W+  
Sbjct: 154 SQDGTIKLWD------LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL- 206

Query: 340 LNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397
                 G LRGH+  +  +  +  G L+ SGS D +I +W  +  E  C+  L+GH+  V
Sbjct: 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSV 264

Query: 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
             LA   D +         L SGS D ++++W 
Sbjct: 265 TSLAWSPDGK--------RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (299), Expect = 3e-30
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 31/255 (12%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA-GFDGLVF 277
           H   ++ ++ S D  LL + S D T KVW     + L ++  H   V  + A      + 
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
           +GS+D T+++W  E           +TL      V+++A SPD  I+   S D  +  W+
Sbjct: 68  SGSSDKTIRLWDLETGEC------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 338 RELNLSHGGVLRGHKLAILCLVTAGN--LVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
            E        LRGH   +  +  + +   V S S D +I +W  +  +  C++ LTGH+G
Sbjct: 122 VE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTG 178

Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455
            V  +A   D E         L S S D ++K+W +S              L GH    N
Sbjct: 179 EVNSVAFSPDGEK--------LLSSSSDGTIKLWDLSTGK-------CLGTLRGHENGVN 223

Query: 456 SLPYAPSFSSQGRIC 470
           S+    +FS  G + 
Sbjct: 224 SV----AFSPDGYLL 234

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  117 bits (295), Expect = 9e-30
 Identities = 71/315 (22%), Positives = 118/315 (37%), Gaps = 56/315 (17%)

Query: 144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK 201
            K ++G V  +  S   + + +G  DG I+VW + +    +    G              
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET-GELLRTLKG-------------- 49

Query: 202 PSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH 261
                            H   +  ++ S D   L S S DKT ++W     +C+ ++  H
Sbjct: 50  -----------------HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92

Query: 262 DDAVNSI-VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD 320
              V+S+  +    ++ + S D T+KVW  E  GK        TL      V ++A SPD
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGK-----CLTTLRGHTDWVNSVAFSPD 146

Query: 321 AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSICIWR 378
              V   S DG +  W+          L GH   +  +     G  + S S+D +I +W 
Sbjct: 147 GTFVASSSQDGTIKLWDLR-TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205

Query: 379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438
               + +    L GH   V  +A   D         ++L SGS D ++++W +       
Sbjct: 206 LSTGKCLGT--LRGHENGVNSVAFSPD--------GYLLASGSEDGTIRVWDLRTGEC-- 253

Query: 439 VSTTQQHPLEGHGVA 453
           V T   H      +A
Sbjct: 254 VQTLSGHTNSVTSLA 268

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.6 bits (231), Expect = 2e-20
 Identities = 78/335 (23%), Positives = 137/335 (40%), Gaps = 34/335 (10%)

Query: 120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKD 179
           G LL        + +            +S    A     E + SG  DG I++W + + +
Sbjct: 39  GILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE 98

Query: 180 ASIHKRVG-----------TLPTFKDFIKCSMKPSNYIEVRRHRNGL-----WIKHFDAI 223
             I    G           + P     +  S      +++               H +++
Sbjct: 99  KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV 158

Query: 224 SSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGS 280
           +SL+ S D  LL S S  D T K+W     K L ++  H D V+S+    DG  L+ +GS
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218

Query: 281 ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL 340
           +DGT+++W        +     ++ L         + SPD +++  GSSDG +  W+   
Sbjct: 219 SDGTIRLW------DLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272

Query: 341 NLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVK 398
           + S    L GH  ++L +     G L+ SGS+D ++ +W  +  + +    L GH GPV 
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 399 CLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
            L+   D          ++  GS D ++++W +  
Sbjct: 333 SLSFSPDGS-------LLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.8 bits (203), Expect = 6e-17
 Identities = 85/349 (24%), Positives = 139/349 (39%), Gaps = 57/349 (16%)

Query: 95  DGFSPNVLIGSLVREEGHIYSLAAAGD---LLYTGSDSKNIRVW--KNQREFSGFKSNSG 149
           D  +P  LI +L      + SLA + D   L    S    I++W  +  +  S    ++ 
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD 199

Query: 150 LVKAIVISNEK---IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYI 206
            V ++  S +    I SG  DG IR+W +S+                             
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-----------------------LLRS 236

Query: 207 EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT-SDYKCLESVIAHDDAV 265
            +  H + +           S S D +LL S S D T ++W   S    L ++  H  +V
Sbjct: 237 TLSGHSDSVVS---------SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287

Query: 266 NSI-VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-I 323
            S+  +    L+ +GS+DGTV++W  E      K   S TL   E  V++L+ SPD + +
Sbjct: 288 LSVAFSPDGKLLASGSSDGTVRLWDLETG----KLLSSLTLKGHEGPVSSLSFSPDGSLL 343

Query: 324 VYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENE 383
           V  GS DG +  W+         +     +  +     G +V SGS D ++ +W      
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403

Query: 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432
            +    L GH+  V  L    D +         L SGS D ++++W + 
Sbjct: 404 LLRN--LDGHTSRVTSLDFSPDGK--------SLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 26/166 (15%)

Query: 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GHKLAILCL 358
            +TL      VT +A SPD  ++  GS DG +  W    +L  G +LR   GH   +  +
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW----DLETGELLRTLKGHTGPVRDV 57

Query: 359 VT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWI 416
                G  + SGS+D +I +W  +  E  C+  LTGH+  V  +A   D          I
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGR--------I 107

Query: 417 LYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS 462
           L S S DK++K+W V        +      L GH    NS+ ++P 
Sbjct: 108 LSSSSRDKTIKVWDVE-------TGKCLTTLRGHTDWVNSVAFSPD 146

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 42/155 (27%)

Query: 104 GSLVRE-EGH---IYSLAAAGDL--LYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIV 155
           G  V    GH   + S+A + D   L + S    I++W     +     + +   V ++ 
Sbjct: 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226

Query: 156 ISNEK--IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRN 213
            S +   + SG +DG IRVW + +      + V TL                        
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTG-----ECVQTLS----------------------- 258

Query: 214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR 248
                H ++++SL+ S D   L S S D T ++W 
Sbjct: 259 ----GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 14/174 (8%)

Query: 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK----LAILC 357
           S  L   E ++T++A SPD  ++  GSSDG +  W+ +        L G        +  
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 358 LVTAGNLVFS--GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415
               GN +     S D ++ +W         +  L GHS  V  LA   D        + 
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWD-LSTPGKLIRTLEGHSESVTSLAFSPDG-------KL 169

Query: 416 ILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRI 469
           +    SLD ++K+W +    P         P+     +P+      S SS G I
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVW 247
           H   ++S++ S D NLL S S D T +VW
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVW 288
           K L ++  H   V S+    DG L+ +GS DGTV+VW
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 98  SPNVLIGSLVREEGHIYSLA--AAGDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLV 151
           S + L+ +L      + S+A    G LL +GS    +R+W  +          K + G V
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331

Query: 152 KAIVISNEK---IFSGHQDGKIRVWKVSSKDASIHKRVGT-----LPTFKDFIKCSMKPS 203
            ++  S +    +  G  DG IR+W + +          +       +    +  S    
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD 391

Query: 204 NYIEVRRHRNGLWIKHFDA----ISSLSMSEDQNLLYSASWDKTFKVWRTSDY 252
             + +     G  +++ D     ++SL  S D   L S S D T ++W     
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)

Query: 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
            L  L GH+GPV  +A   D +         L SGS D ++K+W
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDGK--------YLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)

Query: 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
            L  L GH+GPV  +A   D          +L SGS D +V++W
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGN--------LLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVW 247
           H   ++S++ S D   L S S D T K+W
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	474
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
PTZ00420	568	coronin; Provisional	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG1334	559	consensus WD40 repeat protein [General function pr	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
KOG1334	559	consensus WD40 repeat protein [General function pr	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.57
PRK02889	427	tolB translocation protein TolB; Provisional	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.54
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.43
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.43
PRK05137	435	tolB translocation protein TolB; Provisional	99.42
KOG2139	445	consensus WD40 repeat protein [General function pr	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.34
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.34
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.3
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.3
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.29
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.26
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.24
PRK00178	430	tolB translocation protein TolB; Provisional	99.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.19
PRK04792	448	tolB translocation protein TolB; Provisional	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.17
KOG2315	566	consensus Predicted translation initiation factor	99.14
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.13
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.13
PRK01029	428	tolB translocation protein TolB; Provisional	99.12
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.08
COG4946	668	Uncharacterized protein related to the periplasmic	99.08
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.06
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.98
KOG2315	566	consensus Predicted translation initiation factor	98.96
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.92
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.92
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.92
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.89
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.89
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
KOG2314	698	consensus Translation initiation factor 3, subunit	98.86
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.83
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.82
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.82
KOG2314	698	consensus Translation initiation factor 3, subunit	98.8
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.74
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.74
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.71
KOG2695	425	consensus WD40 repeat protein [General function pr	98.71
KOG2695	425	consensus WD40 repeat protein [General function pr	98.69
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.69
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.69
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.64
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.63
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.57
KOG3621	726	consensus WD40 repeat-containing protein [General	98.53
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.53
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.52
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.51
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.5
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.48
PRK04043	419	tolB translocation protein TolB; Provisional	98.46
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.42
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.35
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.33
KOG3621	726	consensus WD40 repeat-containing protein [General	98.27
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.22
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.21
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.17
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.15
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.14
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.12
PRK02888	635	nitrous-oxide reductase; Validated	98.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.09
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.07
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.06
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.99
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.98
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.9
PRK02888	635	nitrous-oxide reductase; Validated	97.9
KOG2444	238	consensus WD40 repeat protein [General function pr	97.89
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.89
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.88
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.82
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.71
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.7
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.67
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.53
KOG2395	644	consensus Protein involved in vacuole import and d	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.49
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.46
COG3391	381	Uncharacterized conserved protein [Function unknow	97.45
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.44
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.39
COG3391	381	Uncharacterized conserved protein [Function unknow	97.37
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.36
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.32
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.05
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.95
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.95
PHA02713	557	hypothetical protein; Provisional	96.93
PHA02713	557	hypothetical protein; Provisional	96.86
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.84
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.81
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.66
KOG2444	238	consensus WD40 repeat protein [General function pr	96.62
PRK13616	591	lipoprotein LpqB; Provisional	96.48
KOG2395	644	consensus Protein involved in vacuole import and d	96.46
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.46
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.45
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.42
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.42
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.41
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.37
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.32
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.18
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.13
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.9
PHA03098	534	kelch-like protein; Provisional	95.87
PHA03098	534	kelch-like protein; Provisional	95.87
PRK13616	591	lipoprotein LpqB; Provisional	95.7
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.62
COG5276	370	Uncharacterized conserved protein [Function unknow	95.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.29
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.28
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.24
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.2
PHA02790	480	Kelch-like protein; Provisional	95.16
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.93
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.91
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.46
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.37
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.12
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.08
COG5276	370	Uncharacterized conserved protein [Function unknow	94.0
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.95
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.93
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.91
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.89
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.87
KOG2247	615	consensus WD40 repeat-containing protein [General	93.73
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.62
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.61
COG3292	671	Predicted periplasmic ligand-binding sensor domain	93.5
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.08
KOG2714	465	consensus SETA binding protein SB1 and related pro	93.04
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.89
PLN02153	341	epithiospecifier protein	92.72
PHA02790	480	Kelch-like protein; Provisional	92.57
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.52
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.23
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.92
COG5167	776	VID27 Protein involved in vacuole import and degra	91.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.86
COG4590	733	ABC-type uncharacterized transport system, permeas	91.81
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.77
PLN02193	470	nitrile-specifier protein	91.77
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.75
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	91.7
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.68
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.34
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.19
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.1
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.48
PRK13684	334	Ycf48-like protein; Provisional	90.23
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.89
PRK10115	686	protease 2; Provisional	89.74
COG4590	733	ABC-type uncharacterized transport system, permeas	89.68
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	89.24
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.6
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.53
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.39
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.3
PRK13684	334	Ycf48-like protein; Provisional	88.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	88.16
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.77
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.7
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.54
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.27
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.06
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.03
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.69
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	86.65
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.45
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.36
KOG2247	615	consensus WD40 repeat-containing protein [General	86.07
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	85.84
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.74
PF14727	418	PHTB1_N: PTHB1 N-terminus	85.36
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.82
COG5167	776	VID27 Protein involved in vacuole import and degra	84.73
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.85
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	83.04
PRK13613	599	lipoprotein LpqB; Provisional	82.64
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	81.77
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.63
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	81.34
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.29
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.23

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-50  Score=350.41  Aligned_cols=316  Identities=25%  Similarity=0.398  Sum_probs=281.7

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ..+-.++.+|.++|.|++|+  |..|++|+.|.++|+||  ++.+..+.++|...|.|++|+  +..|++|+.||+|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            35556889999999998877  78999999999999999  556788899999999999998  6799999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-----CCCEEEEEECCCcEEEEE
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-----DQNLLYSASWDKTFKVWR  248 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~dg~i~iwd  248 (474)
                      |..++++..                               ..+.+|...|++++|.|     ..++|++++.||.|+|||
T Consensus       185 dpktg~~~g-------------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  185 DPKTGQQIG-------------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             cCCCCCccc-------------------------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            999887642                               24567999999999987     567999999999999999


Q ss_pred             cCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc----------
Q 047728          249 TSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS----------  318 (474)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----------  318 (474)
                      +..+.++..+.+|..+|+|+.|.-+|++++|+.|++|++|+...+.      +...+.+|...|+.++++          
T Consensus       234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~------~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK------LCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh------HHHhhcccchheeeeeccchhhhhcccc
Confidence            9999999999999999999999989999999999999999987543      467888999999999877          


Q ss_pred             -CCC-------------------------CEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeC
Q 047728          319 -PDA-------------------------AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSA  370 (474)
Q Consensus       319 -~~~-------------------------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~  370 (474)
                       |.+                         ..|++|+.|.++.+|+............+|...|  +.|+||++++++++-
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF  387 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF  387 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence             222                         3599999999999999887776667778888766  667889999999999


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH  450 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~  450 (474)
                      |..|++||-++++  .+..+.+|-++|..++|+.|.+        +|++|+.|.++++|++++.       +....+.||
T Consensus       388 DkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR--------LlVS~SkDsTLKvw~V~tk-------Kl~~DLpGh  450 (480)
T KOG0271|consen  388 DKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR--------LLVSGSKDSTLKVWDVRTK-------KLKQDLPGH  450 (480)
T ss_pred             ccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc--------EEEEcCCCceEEEEEeeee-------eecccCCCC
Confidence            9999999999999  5789999999999999999999        9999999999999999997       667789999


Q ss_pred             CCCCCccccCCCCCcCCceeecc
Q 047728          451 GVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       451 ~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      ...|.++    .|||||+.++++
T Consensus       451 ~DEVf~v----DwspDG~rV~sg  469 (480)
T KOG0271|consen  451 ADEVFAV----DWSPDGQRVASG  469 (480)
T ss_pred             CceEEEE----EecCCCceeecC
Confidence            9999888    889999998875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-44  Score=311.29  Aligned_cols=314  Identities=22%  Similarity=0.355  Sum_probs=267.1

Q ss_pred             CCCCCCCCCCCCCCcCccCCCCCCCC-CCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--C-ccc
Q 047728           68 HNDSSSPFSKSPWSTHHVSVPTPSNN-DDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--Q-REF  141 (474)
Q Consensus        68 ~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~-~~~  141 (474)
                      |.+.+-+..++|.+....+....... .+.........+.++|+.-|.|++++  |+.||+|+.||+|++||.  + +..
T Consensus       114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g  193 (480)
T KOG0271|consen  114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG  193 (480)
T ss_pred             CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence            44555566778866666555433322 34555667788999999999998865  899999999999999993  3 446


Q ss_pred             cccccCccCEEEEEec-------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccc
Q 047728          142 SGFKSNSGLVKAIVIS-------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNG  214 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (474)
                      ..+.+|...|++++|.       ..+|++++.||.|+|||+..+.++.                                
T Consensus       194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~--------------------------------  241 (480)
T KOG0271|consen  194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR--------------------------------  241 (480)
T ss_pred             ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE--------------------------------
Confidence            7799999999999996       3589999999999999998876653                                


Q ss_pred             eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-----------CC---------
Q 047728          215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-----------DG---------  274 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-----------~~---------  274 (474)
                      .+.+|+.+|+|+.|--+ .+|++|+.|++|++|+...|.+.+.+++|...|+.++.+.           .+         
T Consensus       242 ~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  242 TLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             EeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence            34569999999999755 4999999999999999999999999999999999998871           11         


Q ss_pred             -----------------eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728          275 -----------------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       275 -----------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d  337 (474)
                                       .+++|+.|.++.+|+.....+     +.....+|..-|..+.|+||++++++++-|..|++||
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-----PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-----chhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence                             499999999999998765443     4667789999999999999999999999999999999


Q ss_pred             cCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          338 RELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       338 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      .++++.+ ..+++|-..|..+.+  |.++|++|+.|.++++||+++.+  ....+.+|...|.++.|+|||.        
T Consensus       396 g~tGk~l-asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~--------  464 (480)
T KOG0271|consen  396 GRTGKFL-ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ--------  464 (480)
T ss_pred             CCCcchh-hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc--------
Confidence            9999765 678899988866554  67899999999999999999887  5678999999999999999999        


Q ss_pred             EEEEecCCCcEEEEE
Q 047728          416 ILYSGSLDKSVKMWR  430 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~  430 (474)
                      .+++|+.|..+++|.
T Consensus       465 rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  465 RVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecCCCceEEEeec
Confidence            899999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-44  Score=315.98  Aligned_cols=281  Identities=24%  Similarity=0.373  Sum_probs=251.4

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecC----CEEEEEeCCCeEEE
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISN----EKIFSGHQDGKIRV  172 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~----~~l~s~~~dg~i~v  172 (474)
                      .+..+-.+-+.+|..+.|+  ++.|+||+.+|.++||+..  ..+..|.+|...|.++.|++    ..++||+.||++++
T Consensus       166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence            3444445667777776665  8899999999999999844  66888999999999999983    38999999999999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      |++++...+                                ..+.+|...|..++|+|+|++|++++.|.+-++||++++
T Consensus       246 w~~~~e~~l--------------------------------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  246 WKLSQETPL--------------------------------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             eccCCCcch--------------------------------hhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence            999986543                                244569999999999999999999999999999999999


Q ss_pred             ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728          253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG  331 (474)
Q Consensus       253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  331 (474)
                      ..+....+|...|.+++|.+|| ++++|+.|..-+|||++++..      ...+.+|..+|..++|+|+|..|++|+.|+
T Consensus       294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~------im~L~gH~k~I~~V~fsPNGy~lATgs~Dn  367 (459)
T KOG0272|consen  294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC------IMFLAGHIKEILSVAFSPNGYHLATGSSDN  367 (459)
T ss_pred             hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE------EEEecccccceeeEeECCCceEEeecCCCC
Confidence            9999999999999999999999 999999999999999998774      778889999999999999999999999999


Q ss_pred             cEEEeecCcccccceeeeecceee--EEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc
Q 047728          332 LVNFWERELNLSHGGVLRGHKLAI--LCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES  408 (474)
Q Consensus       332 ~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  408 (474)
                      +++|||++.... ...+.+|..-|  ++++| .|.+|++++.|++++||...+..  ++..+.||.+.|.++.+++++. 
T Consensus       368 t~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~Dis~d~~-  443 (459)
T KOG0272|consen  368 TCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLDISPDSQ-  443 (459)
T ss_pred             cEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEEeccCCc-
Confidence            999999998766 46777888777  55666 58999999999999999999888  6889999999999999999999 


Q ss_pred             ccccceEEEEEecCCCcEEEEE
Q 047728          409 LSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       409 ~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                             +++|++.|.+|++|.
T Consensus       444 -------~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 -------AIATSSFDRTIKLWR  458 (459)
T ss_pred             -------eEEEeccCceeeecc
Confidence                   999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.1e-42  Score=301.69  Aligned_cols=270  Identities=22%  Similarity=0.313  Sum_probs=243.3

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      +.+.+|..+.|+  ++.|+||+.+|.++||+..+....                                .+|.+|...|
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--------------------------------~~l~gH~~~v  220 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--------------------------------QTLRGHTSRV  220 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--------------------------------EEEeccccce
Confidence            457789889887  779999999999999999887443                                3567899999


Q ss_pred             eEEEecCC--CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          224 SSLSMSED--QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       224 ~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .++.|+|.  +..|++|+.||++++|++.+..++..+.+|...|..++|+|+| +|++++.|.+-++||+++...     
T Consensus       221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-----  295 (459)
T KOG0272|consen  221 GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-----  295 (459)
T ss_pred             eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-----
Confidence            99999995  6799999999999999999999999999999999999999999 999999999999999997654     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWR  378 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd  378 (474)
                       .....+|...|.+++|++||.++++|+.|..-+|||++++.++ .++.+|...|..  |+|+|..|++|+.|++++|||
T Consensus       296 -lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i-m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  296 -LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI-MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             -hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE-EEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence             5667899999999999999999999999999999999999877 577789988855  566899999999999999999


Q ss_pred             CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728          379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP  458 (474)
Q Consensus       379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  458 (474)
                      ++...  .+.++.+|.+-|+.|.|+|+...       +|+|++.|++++||.-.+.       .+.+.+.||...|-++ 
T Consensus       374 LR~r~--~ly~ipAH~nlVS~Vk~~p~~g~-------fL~TasyD~t~kiWs~~~~-------~~~ksLaGHe~kV~s~-  436 (459)
T KOG0272|consen  374 LRMRS--ELYTIPAHSNLVSQVKYSPQEGY-------FLVTASYDNTVKIWSTRTW-------SPLKSLAGHEGKVISL-  436 (459)
T ss_pred             ecccc--cceecccccchhhheEecccCCe-------EEEEcccCcceeeecCCCc-------ccchhhcCCccceEEE-
Confidence            99877  47899999999999999994332       9999999999999999888       6778899999999999 


Q ss_pred             cCCCCCcCCceeeccC
Q 047728          459 YAPSFSSQGRICQKRS  474 (474)
Q Consensus       459 ~~p~~s~Dg~~l~~~s  474 (474)
                         .+|+||+.++++|
T Consensus       437 ---Dis~d~~~i~t~s  449 (459)
T KOG0272|consen  437 ---DISPDSQAIATSS  449 (459)
T ss_pred             ---EeccCCceEEEec
Confidence               8899999998865

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.5e-40  Score=274.58  Aligned_cols=287  Identities=21%  Similarity=0.349  Sum_probs=247.3

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      ...+.|++|.+.|+++.+.  .++|++++.||.+.|||  +......+.-....|..++|+  ++.++.|+.|+...||+
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            3447899999999999987  77999999999999999  445666677778889999997  78999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +.+.+......+                          ...+.+|++-+.|+.|-+| ..|++++.|.++.+||+++++.
T Consensus       126 ls~~d~~g~~~v--------------------------~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  126 LSTRDAEGNVRV--------------------------SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             ccccccccccee--------------------------eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE
Confidence            986532211111                          1245679999999999985 5788999999999999999999


Q ss_pred             eeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          255 LESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      +..+.+|.+.|.++.+.| ++ .+++|+.|+..++||++.+.      ..+.+.+|+..|.+++|.|+|.-+++|+.|++
T Consensus       179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~------c~qtF~ghesDINsv~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ------CVQTFEGHESDINSVRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc------eeEeecccccccceEEEccCCCeeeecCCCce
Confidence            999999999999999999 55 99999999999999999765      58899999999999999999999999999999


Q ss_pred             EEEeecCcccccceeeee---cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728          333 VNFWERELNLSHGGVLRG---HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  409 (474)
                      .++||++....+......   .....++|+..|++|++|..|..+.+||.-.++  .+..+.+|.+.|.|+..+|||.  
T Consensus       253 cRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl~~s~DG~--  328 (343)
T KOG0286|consen  253 CRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCLGVSPDGM--  328 (343)
T ss_pred             eEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEEEECCCCc--
Confidence            999999987665433221   123346677789999999999999999998887  4678899999999999999999  


Q ss_pred             cccceEEEEEecCCCcEEEEE
Q 047728          410 SREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                            .|+||+.|.++|||.
T Consensus       329 ------av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  329 ------AVATGSWDSTLRIWA  343 (343)
T ss_pred             ------EEEecchhHheeecC
Confidence                  899999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-38  Score=264.45  Aligned_cols=286  Identities=24%  Similarity=0.396  Sum_probs=233.4

Q ss_pred             ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC-------ccccccccCccCEEEEEec--CCEEEEEeCC
Q 047728          100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ-------REFSGFKSNSGLVKAIVIS--NEKIFSGHQD  167 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~-------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d  167 (474)
                      ..+..+|.+|++.|..++-.   .+.|++++.|.++.+|++.       ..++.+++|...|..+..+  +++.++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            46778999999999998865   6799999999999999743       4578899999999999887  7899999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW  247 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw  247 (474)
                      +++++||+.+++..                                ..|.+|...|.+++|++|...|++|+.|.+|++|
T Consensus        85 ~~lrlWDl~~g~~t--------------------------------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw  132 (315)
T KOG0279|consen   85 GTLRLWDLATGEST--------------------------------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW  132 (315)
T ss_pred             ceEEEEEecCCcEE--------------------------------EEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence            99999999998543                                2456799999999999999999999999999999


Q ss_pred             EcCCcceeeeeeec--CcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728          248 RTSDYKCLESVIAH--DDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       248 d~~~~~~~~~~~~~--~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  322 (474)
                      ++.. .+..++..+  .+.|.|+.|+|+.   .|++++.|++|++||++..+      ....+.+|...++.++++|||.
T Consensus       133 nt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~------l~~~~~gh~~~v~t~~vSpDGs  205 (315)
T KOG0279|consen  133 NTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ------LRTTFIGHSGYVNTVTVSPDGS  205 (315)
T ss_pred             eecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc------hhhccccccccEEEEEECCCCC
Confidence            9865 444555443  7899999999984   89999999999999998665      3677889999999999999999


Q ss_pred             EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec-------CCcc
Q 047728          323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT-------GHSG  395 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-------~h~~  395 (474)
                      ..++|+.||.+.+||++.++.+...........+||+|+.-.|+.+ .+..|+|||++++..+....+.       ....
T Consensus       206 lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~  284 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDP  284 (315)
T ss_pred             EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCc
Confidence            9999999999999999988775443333334446666655555544 4556999999987632111111       1123


Q ss_pred             ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ....++|++||.        .|++|-.|+.|++|.+..
T Consensus       285 ~clslaws~dG~--------tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  285 ICLSLAWSADGQ--------TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEEEEEcCCCc--------EEEeeecCCcEEEEEeec
Confidence            467789999999        899999999999999853

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.4e-38  Score=259.65  Aligned_cols=284  Identities=19%  Similarity=0.346  Sum_probs=233.8

Q ss_pred             CEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceee
Q 047728          121 DLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI  196 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  196 (474)
                      -+|++++.|.+||+|.  .+.+..+++.....|+.+...  +..|++++.. .||+||+.+.+....             
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv-------------   76 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPV-------------   76 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCce-------------
Confidence            4899999999999998  567788888888899999998  4466666655 699999999875322             


Q ss_pred             eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728          197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L  275 (474)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~  275 (474)
                                       ..+.+|+..|+++.|..+|+.+++|++||+++|||++...+.+.+ .|..+|+++..+|+. .
T Consensus        77 -----------------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQte  138 (311)
T KOG0315|consen   77 -----------------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTE  138 (311)
T ss_pred             -----------------eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcce
Confidence                             345669999999999999999999999999999999997766655 467999999999998 9


Q ss_pred             EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-----ccceeeee
Q 047728          276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-----SHGGVLRG  350 (474)
Q Consensus       276 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~  350 (474)
                      |++|..+|.|++||+.....     ...........|.++.+.|+|.+++.+...|..++|++-...     .+...++.
T Consensus       139 Lis~dqsg~irvWDl~~~~c-----~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a  213 (311)
T KOG0315|consen  139 LISGDQSGNIRVWDLGENSC-----THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA  213 (311)
T ss_pred             EEeecCCCcEEEEEccCCcc-----ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence            99999999999999986533     123334455789999999999999999999999999986542     23344566


Q ss_pred             cceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728          351 HKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       351 ~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                      |...++  -++|++++|++++.|.+++||+.++. ......+.+|...+.+++|+.|++        ||+||+.|+.+++
T Consensus       214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~--------YlvTassd~~~rl  284 (311)
T KOG0315|consen  214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGE--------YLVTASSDHTARL  284 (311)
T ss_pred             ccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCcc--------EEEecCCCCceee
Confidence            776663  46889999999999999999999887 445678899999999999999999        9999999999999


Q ss_pred             EEccCCCCCCCCCcccccccCCCCCCCcc
Q 047728          429 WRVSEQAPPLVSTTQQHPLEGHGVAPNSL  457 (474)
Q Consensus       429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~l  457 (474)
                      |+++.++.       .....+|.....++
T Consensus       285 W~~~~~k~-------v~qy~gh~K~~vc~  306 (311)
T KOG0315|consen  285 WDLSAGKE-------VRQYQGHHKAAVCV  306 (311)
T ss_pred             cccccCce-------eeecCCcccccEEE
Confidence            99999843       33445555444443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.8e-38  Score=261.89  Aligned_cols=276  Identities=19%  Similarity=0.296  Sum_probs=244.5

Q ss_pred             ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ...+++|.+.|.++.|.  .++|++++.||.+.|||.-+.........                                
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--------------------------------   95 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--------------------------------   95 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------------------------------
Confidence            36789999999999998  67999999999999999887765432221                                


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc------ceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEccc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY------KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL  292 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~  292 (474)
                      ....|..++|+|.++++++|+.|+...||++.+.      +..+.+.+|.+.+.|+.|.+|+.|++++.|.+..+||+++
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET  175 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence            5568999999999999999999999999999865      3456788999999999999999999999999999999997


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEe
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGS  369 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs  369 (474)
                      ++.      ...+.+|.+.|.+++++| +++.+++|+.|+..++||++.+... +.+.+|...|  ++|.|+|.-+++|+
T Consensus       176 g~~------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G~afatGS  248 (343)
T KOG0286|consen  176 GQQ------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSGDAFATGS  248 (343)
T ss_pred             ceE------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee-EeecccccccceEEEccCCCeeeecC
Confidence            764      678889999999999999 9999999999999999999998654 6788898776  66678999999999


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG  449 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~  449 (474)
                      +|++.++||++..+.+.+..-..-..+|++++|+..|+        +|++|..|.++.+||.-.+       +....+.+
T Consensus       249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR--------lLfagy~d~~c~vWDtlk~-------e~vg~L~G  313 (343)
T KOG0286|consen  249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR--------LLFAGYDDFTCNVWDTLKG-------ERVGVLAG  313 (343)
T ss_pred             CCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc--------EEEeeecCCceeEeecccc-------ceEEEeec
Confidence            99999999999988766666555667899999999999        9999999999999999887       56677889


Q ss_pred             CCCCCCccccCCCCCcCCceeeccC
Q 047728          450 HGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       450 ~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      |.++|++|    ..+|||.-+.++|
T Consensus       314 HeNRvScl----~~s~DG~av~TgS  334 (343)
T KOG0286|consen  314 HENRVSCL----GVSPDGMAVATGS  334 (343)
T ss_pred             cCCeeEEE----EECCCCcEEEecc
Confidence            99999999    8899999999886

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-37  Score=257.33  Aligned_cols=286  Identities=22%  Similarity=0.309  Sum_probs=223.2

Q ss_pred             ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ...+++|.+.|+.++..   .+.+++++.|.++.+|++...+...-                           .....+.
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G---------------------------~~~r~~~   60 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG---------------------------VPVRRLT   60 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC---------------------------ceeeeee
Confidence            34678999999999986   67999999999999999987633211                           1113467


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +|...|..+..++++++.+++++|+++++||+.+++..+.|.+|...|.+++|++|+ .+++|+.|.+|++|+.....+ 
T Consensus        61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-  139 (315)
T KOG0279|consen   61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-  139 (315)
T ss_pred             ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-
Confidence            799999999999999999999999999999999999999999999999999999999 999999999999999864322 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCC--CCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCC
Q 047728          297 TKHFFSQTLLKQECAVTALAISPD--AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADM  372 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg  372 (474)
                          .......+.+.|.|+.|+|+  ..+|+.++.|++|++||+++.+.. ..+.+|...+  +.++|||.++++|+.||
T Consensus       140 ----~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~-~~~~gh~~~v~t~~vSpDGslcasGgkdg  214 (315)
T KOG0279|consen  140 ----YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR-TTFIGHSGYVNTVTVSPDGSLCASGGKDG  214 (315)
T ss_pred             ----EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh-hccccccccEEEEEECCCCCEEecCCCCc
Confidence                11222223789999999997  789999999999999999976544 5556777655  67789999999999999


Q ss_pred             cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728          373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV  452 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  452 (474)
                      .+.+||++.++  ++..+ +|...|.+++|+|+.-         .+++..+..|+|||+..+...............-..
T Consensus       215 ~~~LwdL~~~k--~lysl-~a~~~v~sl~fspnry---------wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  215 EAMLWDLNEGK--NLYSL-EAFDIVNSLCFSPNRY---------WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             eEEEEEccCCc--eeEec-cCCCeEeeEEecCCce---------eEeeccCCceEEEeccchhhhhhccccccccccccC
Confidence            99999999888  34444 5888999999999974         444445667999999887543321111110000111


Q ss_pred             CCCccccCCCCCcCCceeecc
Q 047728          453 APNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       453 ~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .+.  +..-+||+||+.|..+
T Consensus       283 ~~~--clslaws~dG~tLf~g  301 (315)
T KOG0279|consen  283 DPI--CLSLAWSADGQTLFAG  301 (315)
T ss_pred             CcE--EEEEEEcCCCcEEEee
Confidence            222  2334899999988653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2e-36  Score=251.53  Aligned_cols=288  Identities=21%  Similarity=0.307  Sum_probs=239.5

Q ss_pred             ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-----cccc-cccCccCEEEEEec--CCEEEEEeCCC
Q 047728          100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-----EFSG-FKSNSGLVKAIVIS--NEKIFSGHQDG  168 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-----~~~~-~~~h~~~V~~i~~~--~~~l~s~~~dg  168 (474)
                      ..+++.+.+|++.|+.++++   |.+||+|+.|+.||||+...     .... -.+|...|..++|+  +++|++|+.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            35678899999999999998   34899999999999999763     1111 24799999999996  88999999999


Q ss_pred             eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728          169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR  248 (474)
Q Consensus       169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd  248 (474)
                      ++.||.-..++...                              ..++.||..+|.|++|+++|.+||+++.|+.|.||.
T Consensus        84 t~~Iw~k~~~efec------------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   84 TVVIWKKEDGEFEC------------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             eEEEeecCCCceeE------------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            99999877654322                              135677999999999999999999999999999999


Q ss_pred             cCC---cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728          249 TSD---YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV  324 (474)
Q Consensus       249 ~~~---~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  324 (474)
                      +..   .+++..++.|...|..+.|+|.. +|++++.|.+|++|+-..   .....+.+.+.+|...|.+++|++.|..|
T Consensus       134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl  210 (312)
T KOG0645|consen  134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRL  210 (312)
T ss_pred             ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceE
Confidence            863   46788899999999999999987 999999999999998763   23455678899999999999999999999


Q ss_pred             EEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce-----EEEEeecCCccceEE
Q 047728          325 YCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH-----ICLSMLTGHSGPVKC  399 (474)
Q Consensus       325 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~  399 (474)
                      ++++.|++++||-....     +..-|+..+..+.++...|++++.|+.|++|.....-.     .....-..|...|++
T Consensus       211 ~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs  285 (312)
T KOG0645|consen  211 VSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS  285 (312)
T ss_pred             EEecCCcceEeeeeccC-----cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence            99999999999986532     33456777888888888999999999999997764310     012234578899999


Q ss_pred             EEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      ++|.|....       .|++|+.||.|++|.+.
T Consensus       286 V~w~p~~~~-------~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  286 VQWNPKVSN-------RLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEcCCCCC-------ceeecCCCceEEEEEec
Confidence            999995333       79999999999999975

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.2e-37  Score=287.08  Aligned_cols=351  Identities=21%  Similarity=0.328  Sum_probs=273.7

Q ss_pred             CCCCCCcceeeeeeeeecCcEEEEEEcCC----EEEEeeCCCcEEEEeCC---ccccccccCccCEEEEEec--CCEEEE
Q 047728           93 NDDGFSPNVLIGSLVREEGHIYSLAAAGD----LLYTGSDSKNIRVWKNQ---REFSGFKSNSGLVKAIVIS--NEKIFS  163 (474)
Q Consensus        93 ~~~~~~~~~~~~~l~~h~~~i~~~~~~~~----~l~tgs~dg~v~vwd~~---~~~~~~~~h~~~V~~i~~~--~~~l~s  163 (474)
                      ..+++.......+|.||.|.|.++.|.+.    +|++|..|++|++||..   .++..+..|...|+++.+.  +..+++
T Consensus       130 ~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  130 KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEE
Confidence            34577888999999999999999999843    68999999999999965   3467788999999999997  567888


Q ss_pred             EeCCCeEEEEecCCCCcceeee----------------------------------------------ecccCccceeee
Q 047728          164 GHQDGKIRVWKVSSKDASIHKR----------------------------------------------VGTLPTFKDFIK  197 (474)
Q Consensus       164 ~~~dg~i~vwd~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~  197 (474)
                      ++.|..+.|||+.+.+......                                              ....+.......
T Consensus       210 ~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~  289 (775)
T KOG0319|consen  210 VGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA  289 (775)
T ss_pred             eccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence            8888888888875433221100                                              000000000000


Q ss_pred             ee----------------------------------------cC-CCCeE------------EEeeeccceeeeccCCee
Q 047728          198 CS----------------------------------------MK-PSNYI------------EVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       198 ~~----------------------------------------~~-~~~~~------------~~~~~~~~~~~~h~~~V~  224 (474)
                      ..                                        +. ....+            ........++.+|++.|.
T Consensus       290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vl  369 (775)
T KOG0319|consen  290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVL  369 (775)
T ss_pred             ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhhee
Confidence            00                                        00 00000            111122245679999999


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      ++....+|.+|++|+.|+++++|.++++    .++....+|...|.+++++..+  .|++++.|+++++|++........
T Consensus       370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~  449 (775)
T KOG0319|consen  370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF  449 (775)
T ss_pred             eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence            9996677889999999999999988443    3455668899999999997776  899999999999999986222111


Q ss_pred             ---eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCc
Q 047728          299 ---HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMS  373 (474)
Q Consensus       299 ---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~  373 (474)
                         .........|...|++++++|+.+++++|+.|.+.++|+++ ...+...+.+|...+.|+++  ..+.++++|.|++
T Consensus       450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T  528 (775)
T KOG0319|consen  450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT  528 (775)
T ss_pred             cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence               11122446789999999999999999999999999999999 44566889999999877776  4679999999999


Q ss_pred             EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVA  453 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  453 (474)
                      |+||.+.+..  |+.++.||...|..+.|..++.        .|++++.||.|++|++.+.       .+...+..|..+
T Consensus       529 vKIW~is~fS--ClkT~eGH~~aVlra~F~~~~~--------qliS~~adGliKlWnikt~-------eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  529 VKIWSISTFS--CLKTFEGHTSAVLRASFIRNGK--------QLISAGADGLIKLWNIKTN-------ECEMTLDAHNDR  591 (775)
T ss_pred             EEEEEeccce--eeeeecCccceeEeeeeeeCCc--------EEEeccCCCcEEEEeccch-------hhhhhhhhccce
Confidence            9999999888  8999999999999999999999        8999999999999999998       788899999999


Q ss_pred             CCccccCC
Q 047728          454 PNSLPYAP  461 (474)
Q Consensus       454 v~~l~~~p  461 (474)
                      |.++.-.|
T Consensus       592 vWaL~~~~  599 (775)
T KOG0319|consen  592 VWALSVSP  599 (775)
T ss_pred             eEEEeecC
Confidence            99985444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.2e-38  Score=271.56  Aligned_cols=274  Identities=25%  Similarity=0.449  Sum_probs=242.8

Q ss_pred             cCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      ...|+|+.++.+.+++|..|.+|+|||.+  .....+.+|++.|.|+.+....|++|+.|.+|+|||+++++++      
T Consensus       197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l------  270 (499)
T KOG0281|consen  197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPL------  270 (499)
T ss_pred             CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchh------
Confidence            45799999999999999999999999965  5677889999999999999999999999999999999999875      


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---eeeeeeecCcc
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---CLESVIAHDDA  264 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~  264 (474)
                                                .++.+|...|..+.|+  +.++++++.|.++.+||+....   +...+.+|...
T Consensus       271 --------------------------~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa  322 (499)
T KOG0281|consen  271 --------------------------NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  322 (499)
T ss_pred             --------------------------hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence                                      3566799999999997  4599999999999999997654   34567899999


Q ss_pred             eeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728          265 VNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH  344 (474)
Q Consensus       265 v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  344 (474)
                      |+.+.|... ++++++.|.+|++|++.+..      +...+.+|...|.|+.+  .++++++|++|.+|++||++.+..+
T Consensus       323 VNvVdfd~k-yIVsASgDRTikvW~~st~e------fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  323 VNVVDFDDK-YIVSASGDRTIKVWSTSTCE------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL  393 (499)
T ss_pred             eeeeccccc-eEEEecCCceEEEEecccee------eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence            999999754 99999999999999987654      57888999999999887  5889999999999999999999776


Q ss_pred             ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE-------EEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728          345 GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI-------CLSMLTGHSGPVKCLAVEKDDESLSREKRWIL  417 (474)
Q Consensus       345 ~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l  417 (474)
                       ..+.+|..-+.|+.++.+.+++|+.||+|++||+..+...       |+..+..|.+.|..+.|..-          .+
T Consensus       394 -RvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f----------qI  462 (499)
T KOG0281|consen  394 -RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF----------QI  462 (499)
T ss_pred             -HHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce----------EE
Confidence             6888999999999999999999999999999999876543       66777889999999999654          68


Q ss_pred             EEecCCCcEEEEEccCCCCC
Q 047728          418 YSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       418 ~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      ++++.|.+|-|||+.++.+.
T Consensus       463 vsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  463 ISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             EeccCCCeEEEEEcCCCCcc
Confidence            99999999999999887443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.5e-38  Score=280.35  Aligned_cols=288  Identities=17%  Similarity=0.305  Sum_probs=249.6

Q ss_pred             CCCcceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEe---CCccccccccCccCEEEEEec--CCEEEEEeCC
Q 047728           96 GFSPNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWK---NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQD  167 (474)
Q Consensus        96 ~~~~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd---~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d  167 (474)
                      -+-|..++.++.+|+..|.++.+-   +.+|++|+.|+.|+||+   .++.++++.+|..+|..++|+  +..+++++.|
T Consensus       200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            345889999999999999998865   78999999999999998   457899999999999999998  7899999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKV  246 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~i  246 (474)
                      +.|++||++++++...+.                                 ....+.|+.|+|++ +.+++|+.|+.|+.
T Consensus       280 ~~lKlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~  326 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQ  326 (503)
T ss_pred             eeeeeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence            999999999998876554                                 33457899999987 89999999999999


Q ss_pred             EEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      ||+++++.++.+..|-+.|..+.|.+++ ++++.+.|+.++||+.+..-.     .............++..+|++++++
T Consensus       327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~~  401 (503)
T KOG0282|consen  327 WDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWFA  401 (503)
T ss_pred             EeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCeeh
Confidence            9999999999999999999999999999 999999999999999875543     2223333445678899999999999


Q ss_pred             EEcCCCcEEEeecCcccc--cceeeeeccee----eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEE
Q 047728          326 CGSSDGLVNFWERELNLS--HGGVLRGHKLA----ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKC  399 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~----v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~  399 (474)
                      +-+.|+.|.+|.+.....  ....+.+|...    -+.++|||.+|++|+.||.+.+||.++.+  .+..+.+|.+++..
T Consensus       402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~ci~  479 (503)
T KOG0282|consen  402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQPCIG  479 (503)
T ss_pred             hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh--hhhccccCCcceEE
Confidence            999999999998754432  23445677644    36788999999999999999999999887  56789999999999


Q ss_pred             EEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          400 LAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +.|+|...+       .+|||+.||.|++|+
T Consensus       480 v~wHP~e~S-------kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  480 VDWHPVEPS-------KVATCGWDGLIKIWD  503 (503)
T ss_pred             EEecCCCcc-------eeEecccCceeEecC
Confidence            999998876       799999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-37  Score=265.61  Aligned_cols=283  Identities=21%  Similarity=0.370  Sum_probs=249.4

Q ss_pred             eeeeeeeeecCcEEEEEEcC--CEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          101 VLIGSLVREEGHIYSLAAAG--DLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~~--~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      .+...+.+|+.+|+.+-+..  -+++++++|++|++||  +++....+++|...|..|+|+  +.+|++++.|=.+++||
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD  178 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence            45667788999999988774  4778888999999999  446788899999999999998  88999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +++...-.                               ....+|...|.+++|-|.|.+|++++.|.+|+.|++.++-+
T Consensus       179 ~~~~~~c~-------------------------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c  227 (406)
T KOG0295|consen  179 FDTFFRCI-------------------------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC  227 (406)
T ss_pred             HHHHHHHH-------------------------------HHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee
Confidence            98741110                               23356999999999999999999999999999999999999


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-------------
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-------------  320 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------------  320 (474)
                      +.++.+|...|..+..+.|| ++++++.|.+|++|-+.+..      +...+..|+.+|.+++|-|.             
T Consensus       228 v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  228 VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ------CKAELREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch------hhhhhhccccceEEEEecccccCcchhhccCCC
Confidence            99999999999999999999 89999999999999887654      35677889999999999873             


Q ss_pred             --CCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728          321 --AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP  396 (474)
Q Consensus       321 --~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~  396 (474)
                        +.++.+++.|++|++||+.++.++ ..+.+|...|.  +|+|.|+||+++.+|+++++||+++.+  |+..+..|..-
T Consensus       302 ~~~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~--cmk~~~ah~hf  378 (406)
T KOG0295|consen  302 NGGQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ--CMKTLEAHEHF  378 (406)
T ss_pred             CCccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce--eeeccCCCcce
Confidence              258999999999999999999776 56778998885  555669999999999999999999988  88899999999


Q ss_pred             eEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      |+++.|+.+..        +++||+-|.++++|.-
T Consensus       379 vt~lDfh~~~p--------~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  379 VTSLDFHKTAP--------YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eEEEecCCCCc--------eEEeccccceeeeeec
Confidence            99999999988        9999999999999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-36  Score=260.95  Aligned_cols=289  Identities=21%  Similarity=0.373  Sum_probs=251.5

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR  171 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~  171 (474)
                      .|-.+.+.+.+|.+-|.|++++  +.+|+||+.|++|+|||+  ++...++.+|...|..++++  -.|+++++.|+.|+
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            3457888999999999999988  779999999999999994  46777889999999999999  45999999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      .||++..+.+.                                .+.+|-..|.|++.+|.-..|++|+.|.++++||+++
T Consensus       219 CwDLe~nkvIR--------------------------------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  219 CWDLEYNKVIR--------------------------------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             EEechhhhhHH--------------------------------HhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence            99999887653                                4567999999999999999999999999999999999


Q ss_pred             cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD  330 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  330 (474)
                      ...+..+.+|..+|..+.+.|-+ .+++|+.|++|++||++.+..      ...+..|...|.+++.+|....+++++.|
T Consensus       267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt------~~tlt~hkksvral~lhP~e~~fASas~d  340 (460)
T KOG0285|consen  267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT------MITLTHHKKSVRALCLHPKENLFASASPD  340 (460)
T ss_pred             cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce------eEeeecccceeeEEecCCchhhhhccCCc
Confidence            99999999999999999998866 999999999999999997764      56778899999999999999999998887


Q ss_pred             CcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEE-ee--c---CCccceEEEEEe
Q 047728          331 GLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLS-ML--T---GHSGPVKCLAVE  403 (474)
Q Consensus       331 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~--~---~h~~~v~~l~~~  403 (474)
                       .|+.|++..+..+.. +.+|...+.+++.+ ..++++|++.|.+.+||.+++...... ..  .   .....|.+.+|.
T Consensus       341 -nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD  418 (460)
T KOG0285|consen  341 -NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD  418 (460)
T ss_pred             -cceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence             599999988876654 78899999999875 679999999999999999887522111 11  1   134578999999


Q ss_pred             eCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..+.        .|++|..|.+|++|.-.+.
T Consensus       419 ktg~--------rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  419 KTGS--------RLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             ccCc--------eEEeccCCcceEEEecccc
Confidence            9988        8999999999999987654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-36  Score=268.50  Aligned_cols=303  Identities=20%  Similarity=0.274  Sum_probs=251.4

Q ss_pred             ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc------cccccc----------cCccCEEEEEec--C
Q 047728          100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR------EFSGFK----------SNSGLVKAIVIS--N  158 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~------~~~~~~----------~h~~~V~~i~~~--~  158 (474)
                      ....+.+. |+.+|.+.+++   ..+|++|+.|-..++|++..      ....++          .....|++++|+  |
T Consensus       169 ~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G  247 (524)
T KOG0273|consen  169 SSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG  247 (524)
T ss_pred             ccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC
Confidence            33344444 99999999988   33899999999999998543      111111          124579999999  8


Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA  238 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  238 (474)
                      ..|++|+.||.+++|+.......                                 .+..|.++|.++.|+..|++|+++
T Consensus       248 ~~LatG~~~G~~riw~~~G~l~~---------------------------------tl~~HkgPI~slKWnk~G~yilS~  294 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNKDGNLIS---------------------------------TLGQHKGPIFSLKWNKKGTYILSG  294 (524)
T ss_pred             CeEEEeecCcEEEEEecCchhhh---------------------------------hhhccCCceEEEEEcCCCCEEEec
Confidence            89999999999999999876542                                 234499999999999999999999


Q ss_pred             ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728          239 SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS  318 (474)
Q Consensus       239 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  318 (474)
                      +.|+++.+||..+++....+..|..+-..+.|-.+..+++.+.|+.|+|+.+....      +..++.+|.+.|.++.|+
T Consensus       295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~------P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR------PVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             cCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC------cceeeecccCceEEEEEC
Confidence            99999999999999999999999988788999888899999999999999987554      367788899999999999


Q ss_pred             CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-----------cCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728          319 PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-----------AGNLVFSGSADMSICIWRRKENEHICL  387 (474)
Q Consensus       319 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~l~sgs~dg~i~iwd~~~~~~~~~  387 (474)
                      |.+.+|++++.|++++||........ .-+..|...+..+.+           .+..+++++.|++|++||+..+.  ++
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~~~~~-~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv--~i  445 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQSNSV-HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV--PI  445 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCCCcch-hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc--ee
Confidence            99999999999999999998766544 456678777655543           25689999999999999999988  67


Q ss_pred             EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       388 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      ..+..|+.+|.+++|+|+++        ++|+|+.||.|.+|++.+++       ..+...+ ...|..++|+-
T Consensus       446 ~~f~kH~~pVysvafS~~g~--------ylAsGs~dg~V~iws~~~~~-------l~~s~~~-~~~Ifel~Wn~  503 (524)
T KOG0273|consen  446 HTLMKHQEPVYSVAFSPNGR--------YLASGSLDGCVHIWSTKTGK-------LVKSYQG-TGGIFELCWNA  503 (524)
T ss_pred             EeeccCCCceEEEEecCCCc--------EEEecCCCCeeEeccccchh-------eeEeecC-CCeEEEEEEcC
Confidence            88999999999999999999        99999999999999999883       3333333 34477786654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-35  Score=276.31  Aligned_cols=377  Identities=21%  Similarity=0.346  Sum_probs=285.3

Q ss_pred             CCCCCCCCCCCCcCccCCC--------CCCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc
Q 047728           70 DSSSPFSKSPWSTHHVSVP--------TPSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR  139 (474)
Q Consensus        70 ~~~~~~~~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~  139 (474)
                      ...+++.+||........-        .|......+.|..+.++..+|-..|.++.|+  .++|++|+.|-+++||....
T Consensus        97 ~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~  176 (893)
T KOG0291|consen   97 RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG  176 (893)
T ss_pred             CccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence            3456677788765443321        1222233788999999999999999999997  67999999999999997442


Q ss_pred             --c--ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee----------------------------
Q 047728          140 --E--FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR----------------------------  185 (474)
Q Consensus       140 --~--~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------------------------  185 (474)
                        .  ...+.+|.+.|.+.-|.  ...++|.+.||.+.+|..+.........                            
T Consensus       177 ~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~  256 (893)
T KOG0291|consen  177 NKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT  256 (893)
T ss_pred             ccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence              2  45678999999999997  5579999999999999887221110000                            


Q ss_pred             --ecccCccceeeeeecCCCCeEEEeeecccee--------------eeccCCeeEEEecCCCCEEEEEECC-CcEEEEE
Q 047728          186 --VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW--------------IKHFDAISSLSMSEDQNLLYSASWD-KTFKVWR  248 (474)
Q Consensus       186 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~h~~~V~~l~~~~~~~~l~s~s~d-g~i~iwd  248 (474)
                        .........+..+.+++...+.+.....+.+              .-...+|..++|+..|..|+.|+.. |.+.||+
T Consensus       257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence              0000001222333334333333333332222              1133578889999999999988754 8999999


Q ss_pred             cCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728          249 TSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG  327 (474)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  327 (474)
                      .++...+...++|...+++++++||| ++++|+.||.|+|||...+      ++..++..|...|+.+.|+..++.+++.
T Consensus       337 WqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g~~llss  410 (893)
T KOG0291|consen  337 WQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARGNVLLSS  410 (893)
T ss_pred             eeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------eEEEEeccCCCceEEEEEEecCCEEEEe
Confidence            99998898999999999999999999 9999999999999998744      3688999999999999999999999999


Q ss_pred             cCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCC-cEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          328 SSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADM-SICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      +-||+|+.||+........+..+......|++  |.|.++++|+.|. .|.+|++++++  .+..+.||.+||.+++|+|
T Consensus       411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~  488 (893)
T KOG0291|consen  411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSP  488 (893)
T ss_pred             ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEcc
Confidence            99999999999887766555555555555555  5599999999885 79999999999  5788999999999999999


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      ++.        .|+++|.|.+||+|++-......      .++ .+...+..+    +|+|||+-|+.+
T Consensus       489 ~~~--------~LaS~SWDkTVRiW~if~s~~~v------Etl-~i~sdvl~v----sfrPdG~elaVa  538 (893)
T KOG0291|consen  489 DGS--------LLASGSWDKTVRIWDIFSSSGTV------ETL-EIRSDVLAV----SFRPDGKELAVA  538 (893)
T ss_pred             ccC--------eEEeccccceEEEEEeeccCcee------eeE-eeccceeEE----EEcCCCCeEEEE
Confidence            999        99999999999999997652211      111 233345555    888999877653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-37  Score=269.82  Aligned_cols=275  Identities=24%  Similarity=0.340  Sum_probs=237.8

Q ss_pred             CcEEEEEE--cCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceee
Q 047728          111 GHIYSLAA--AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHK  184 (474)
Q Consensus       111 ~~i~~~~~--~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~  184 (474)
                      ..|..+.+  +|+.|++|++.|.+.+|+..  .-...+++|..+|.++.|+  +.++++|+.+|.|++|+........  
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~--  174 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI--  174 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH--
Confidence            34555554  58999999999999999854  2344578999999999998  7899999999999999987654321  


Q ss_pred             eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc
Q 047728          185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA  264 (474)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  264 (474)
                                                    ....|...|++++|+|+...|+++++||+|+|||....+....+.+|.-.
T Consensus       175 ------------------------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd  224 (464)
T KOG0284|consen  175 ------------------------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD  224 (464)
T ss_pred             ------------------------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence                                          11226689999999999999999999999999999999888899999999


Q ss_pred             eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc
Q 047728          265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS  343 (474)
Q Consensus       265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~  343 (474)
                      |.++.|+|.. ++++|+.|..|++||.+++.      ++.++..|...|..+.|++++++|++++.|..+++||+++.+.
T Consensus       225 VksvdWHP~kgLiasgskDnlVKlWDprSg~------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGS------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             cceeccCCccceeEEccCCceeEeecCCCcc------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence            9999999987 99999999999999999776      4788899999999999999999999999999999999996554


Q ss_pred             cceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe
Q 047728          344 HGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG  420 (474)
Q Consensus       344 ~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~  420 (474)
                      + ...++|+..+.++.+   ...+|.+|+.||.|..|.+...+++ ...-.+|...|++++|+|-|.        +|++|
T Consensus       299 l-~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-~~i~~AHd~~iwsl~~hPlGh--------il~tg  368 (464)
T KOG0284|consen  299 L-FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-GEIPPAHDGEIWSLAYHPLGH--------ILATG  368 (464)
T ss_pred             H-HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-cCCCcccccceeeeeccccce--------eEeec
Confidence            4 677899999988754   4789999999999999999855533 445568999999999999999        99999


Q ss_pred             cCCCcEEEEEccC
Q 047728          421 SLDKSVKMWRVSE  433 (474)
Q Consensus       421 s~Dg~i~vw~~~~  433 (474)
                      +.|.++++|.-..
T Consensus       369 snd~t~rfw~r~r  381 (464)
T KOG0284|consen  369 SNDRTVRFWTRNR  381 (464)
T ss_pred             CCCcceeeeccCC
Confidence            9999999996543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-34  Score=260.67  Aligned_cols=351  Identities=17%  Similarity=0.251  Sum_probs=272.7

Q ss_pred             CCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccc---cCccCEEEEEec--CCEEEEEeCC
Q 047728           97 FSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFK---SNSGLVKAIVIS--NEKIFSGHQD  167 (474)
Q Consensus        97 ~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~---~h~~~V~~i~~~--~~~l~s~~~d  167 (474)
                      =+|..+..++..|..-|+|+.++  |.++||++.||.|.+||  .++.+..+.   +|.+.|.+++|+  +..++|++.|
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence            36778888999999999998865  88999999999999998  445555555   899999999998  5699999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE-----------e-eeccceeeeccCCeeEEEecCCCCEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV-----------R-RHRNGLWIKHFDAISSLSMSEDQNLL  235 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~h~~~V~~l~~~~~~~~l  235 (474)
                      .+++|||+.+.++......... ...+.+.+.......+.+           . .....++.+|...|+++..++++++|
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i  335 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI  335 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence            9999999999877655443332 112222222222221111           1 11335678999999999999999999


Q ss_pred             EEEECCCcEEEEEcCCcceeeee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728          236 YSASWDKTFKVWRTSDYKCLESV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA  314 (474)
Q Consensus       236 ~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  314 (474)
                      ++|+.||.|.-||..++..-... +.|...|.+++.+..+.+++.+.|.++++.++.........     .........+
T Consensus       336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~-----~~~lg~QP~~  410 (603)
T KOG0318|consen  336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE-----VVKLGSQPKG  410 (603)
T ss_pred             EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc-----eeecCCCcee
Confidence            99999999999999988765544 67999999999988789999999999999998654432111     1122333448


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728          315 LAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS  394 (474)
Q Consensus       315 l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~  394 (474)
                      ++..+++.+++..+.++.+.+=|....   .....+......+++++++.++.|+.|+.|+||.+..........+..|.
T Consensus       411 lav~~d~~~avv~~~~~iv~l~~~~~~---~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~  487 (603)
T KOG0318|consen  411 LAVLSDGGTAVVACISDIVLLQDQTKV---SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR  487 (603)
T ss_pred             EEEcCCCCEEEEEecCcEEEEecCCcc---eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence            899999888887777765555444432   23334566788999999999999999999999999887655556778899


Q ss_pred             cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ++|++++++||+.        +||+|...+.|.+|++.+.+.      ......-|+.+|+++    +||||.++++++|
T Consensus       488 a~iT~vaySpd~~--------yla~~Da~rkvv~yd~~s~~~------~~~~w~FHtakI~~~----aWsP~n~~vATGS  549 (603)
T KOG0318|consen  488 AAITDVAYSPDGA--------YLAAGDASRKVVLYDVASREV------KTNRWAFHTAKINCV----AWSPNNKLVATGS  549 (603)
T ss_pred             CCceEEEECCCCc--------EEEEeccCCcEEEEEcccCce------ecceeeeeeeeEEEE----EeCCCceEEEecc
Confidence            9999999999999        999999999999999998753      223344599999999    7788899998886

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.5e-36  Score=251.20  Aligned_cols=282  Identities=23%  Similarity=0.329  Sum_probs=238.9

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC---ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ---REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~---~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ..+..+.+|++.|+.+.|+  |.+||+|+.|..|.+|+..   +....+++|.++|..+.|.  +..|++++.|.+|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            3445678999999998876  8899999999999999843   4466778999999999997  7799999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~  252 (474)
                      |+++++....                                +.+|..-|+++.-+.-| .++.+++.|+++++||+++.
T Consensus       118 D~~tG~~~rk--------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen  118 DAETGKRIRK--------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             ecccceeeeh--------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            9999987643                                34488899998754433 56778999999999999999


Q ss_pred             ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728          253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG  331 (474)
Q Consensus       253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  331 (474)
                      +.++++.. .-.++++.|..++ .+++|+-|+.|++||++...      ....+.+|...|+.+..+++|.++++-+.|.
T Consensus       166 ~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~  238 (338)
T KOG0265|consen  166 EAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND------GLYTLSGHADTITGLSLSRYGSFLLSNSMDN  238 (338)
T ss_pred             chhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCc------ceEEeecccCceeeEEeccCCCccccccccc
Confidence            88888754 5678999999888 99999999999999998655      3678899999999999999999999999999


Q ss_pred             cEEEeecCccc---ccceeeeeccee------eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728          332 LVNFWERELNL---SHGGVLRGHKLA------ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV  402 (474)
Q Consensus       332 ~i~v~d~~~~~---~~~~~~~~~~~~------v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~  402 (474)
                      ++++||++...   ....++.+|.-.      -.+++|++..+.+|+.|..+++||.....  .+..+.+|.+.|++++|
T Consensus       239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gsvn~~~F  316 (338)
T KOG0265|consen  239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR--ILYKLPGHYGSVNEVDF  316 (338)
T ss_pred             eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc--EEEEcCCcceeEEEeee
Confidence            99999987542   222344444322      26678899999999999999999998866  67899999999999999


Q ss_pred             eeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          403 EKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      +|...        +|.+++.|.+|.+=++
T Consensus       317 hp~e~--------iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  317 HPTEP--------IILSCSSDKTIYLGEI  337 (338)
T ss_pred             cCCCc--------EEEEeccCceeEeecc
Confidence            99998        9999999999987443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=241.00  Aligned_cols=273  Identities=17%  Similarity=0.344  Sum_probs=235.0

Q ss_pred             CCCCcceeeeeeeeecCcEEEEEE--cCCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeC
Q 047728           95 DGFSPNVLIGSLVREEGHIYSLAA--AGDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQ  166 (474)
Q Consensus        95 ~~~~~~~~~~~l~~h~~~i~~~~~--~~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~  166 (474)
                      +......+.+++...++.|+++..  ++++||+|+.- .||+||+.    .++..+.+|...|+++.|.  ++.++||++
T Consensus        25 Wqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse  103 (311)
T KOG0315|consen   25 WQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE  103 (311)
T ss_pred             eehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence            344566888899988999998774  57788888865 69999954    4788999999999999998  889999999


Q ss_pred             CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728          167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      ||+++|||+....+...                                 ..|..+|+++..+|+...|++|..+|.|++
T Consensus       104 Dgt~kIWdlR~~~~qR~---------------------------------~~~~spVn~vvlhpnQteLis~dqsg~irv  150 (311)
T KOG0315|consen  104 DGTVKIWDLRSLSCQRN---------------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRV  150 (311)
T ss_pred             CceEEEEeccCcccchh---------------------------------ccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence            99999999998544322                                 227899999999999999999999999999


Q ss_pred             EEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728          247 WRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV  324 (474)
Q Consensus       247 wd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  324 (474)
                      ||+.+..+...+.. ...+|.++...||| +++.+...|...+|++..........+...+..|...+..+.++|++++|
T Consensus       151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence            99998877666543 45689999999999 89999999999999998766666677788899999999999999999999


Q ss_pred             EEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728          325 YCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV  402 (474)
Q Consensus       325 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~  402 (474)
                      ++++.|.+++||+.++.......+.+|...+  ..|+.++.||++|+.|+.+++||+..++  .+....+|..+..|++.
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc--eeeecCCcccccEEEEe
Confidence            9999999999999998866667788897776  5677789999999999999999999988  46788899888888876


Q ss_pred             e
Q 047728          403 E  403 (474)
Q Consensus       403 ~  403 (474)
                      .
T Consensus       309 n  309 (311)
T KOG0315|consen  309 N  309 (311)
T ss_pred             e
Confidence            4

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=264.60  Aligned_cols=272  Identities=27%  Similarity=0.430  Sum_probs=234.8

Q ss_pred             CccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728          147 NSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL  226 (474)
Q Consensus       147 h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  226 (474)
                      ....|.|+.++.+.+++|..|.+|+|||..+..+.                                ..+.||++.|.|+
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~--------------------------------~~L~GHtGSVLCL  243 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL--------------------------------KILTGHTGSVLCL  243 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHH--------------------------------HhhhcCCCcEEee
Confidence            56689999999999999999999999999887654                                3557799999999


Q ss_pred             EecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728          227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL  306 (474)
Q Consensus       227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  306 (474)
                      .|.  .+.|++|+.|.+|++||+++++++.++..|...|..+.|+ +|++++++.|.++.+||+....   ...+...+.
T Consensus       244 qyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps---~it~rrVLv  317 (499)
T KOG0281|consen  244 QYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPT---DITLRRVLV  317 (499)
T ss_pred             ecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCch---HHHHHHHHh
Confidence            985  5699999999999999999999999999999999999997 5699999999999999997554   233456778


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC  386 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~  386 (474)
                      +|...|..+.|+  .+++++++.|.+|++|++.+...+ ..+.+|+..+.|+...++++++|+.|.+|++||+..+.  +
T Consensus       318 GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv-Rtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~--c  392 (499)
T KOG0281|consen  318 GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV-RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--C  392 (499)
T ss_pred             hhhhheeeeccc--cceEEEecCCceEEEEeccceeee-hhhhcccccceehhccCeEEEecCCCceEEEEeccccH--H
Confidence            999999999996  459999999999999999988655 68889999999999999999999999999999999998  7


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC--CCCcccccccCCCCCCCccccCC---
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL--VSTTQQHPLEGHGVAPNSLPYAP---  461 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~p---  461 (474)
                      +..+.+|..-|.|+.|...          .+++|+.||+|+|||+..+..+.  ....+...+-.|+++|-.+.|.-   
T Consensus       393 LRvLeGHEeLvRciRFd~k----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqI  462 (499)
T KOG0281|consen  393 LRVLEGHEELVRCIRFDNK----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQI  462 (499)
T ss_pred             HHHHhchHHhhhheeecCc----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEE
Confidence            8899999999999999654          69999999999999999875553  23346667778888888887753   


Q ss_pred             -CCCcCCceee
Q 047728          462 -SFSSQGRICQ  471 (474)
Q Consensus       462 -~~s~Dg~~l~  471 (474)
                       +.|.|..+|+
T Consensus       463 vsssHddtILi  473 (499)
T KOG0281|consen  463 ISSSHDDTILI  473 (499)
T ss_pred             EeccCCCeEEE
Confidence             3355555553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=260.14  Aligned_cols=287  Identities=23%  Similarity=0.355  Sum_probs=237.6

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-----ccccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGK  169 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~  169 (474)
                      |.+-...|..|+..|+-+.|+  |+|||+|+.|.+..+|++-     +...++.+|..+|..+.|+  .++|++|+.|..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            445556788999999998887  9999999999999999733     3467788999999999999  569999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      +++||+.++.......                               .+|...+.+++|.||+..+++|+.|++|..||+
T Consensus       293 ~~lwDv~tgd~~~~y~-------------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYP-------------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeeccCCcchhhhhcc-------------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            9999999997653222                               125578999999999999999999999999998


Q ss_pred             CCcceeeeeeec-CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728          250 SDYKCLESVIAH-DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG  327 (474)
Q Consensus       250 ~~~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  327 (474)
                      . |+.+...++- ...|.+++..+|| .+++.+.|..|++++.+....       ..+.....+|++++++.+++++++.
T Consensus       342 D-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-------r~lise~~~its~~iS~d~k~~Lvn  413 (519)
T KOG0293|consen  342 D-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-------RGLISEEQPITSFSISKDGKLALVN  413 (519)
T ss_pred             C-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-------hccccccCceeEEEEcCCCcEEEEE
Confidence            5 4445555443 3568999999999 888888999999999875432       2245567789999999999999999


Q ss_pred             cCCCcEEEeecCcccccceeeeecceee----EEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728          328 SSDGLVNFWERELNLSHGGVLRGHKLAI----LCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV  402 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v----~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~  402 (474)
                      -.+..+++||++.... .....+|+..-    .||.- +..++++|++|+.|+||+..+++  ++.++.||...|+|++|
T Consensus       414 L~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~~vNcVsw  490 (519)
T KOG0293|consen  414 LQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSKTVNCVSW  490 (519)
T ss_pred             cccCeeEEeecchhhH-HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcceeeEEec
Confidence            9999999999995544 34555666443    33433 45899999999999999999998  67899999999999999


Q ss_pred             eeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +|....       ++|++|+||+||||.....
T Consensus       491 NP~~p~-------m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  491 NPADPE-------MFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCCCHH-------HhhccCCCCeEEEecCCcc
Confidence            999876       8999999999999988654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.4e-36  Score=283.65  Aligned_cols=270  Identities=23%  Similarity=0.380  Sum_probs=217.6

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      -...++|..|+  ..+||.|-.|..|++|.+...+.........+.... .-.........-.-.......+.+|.++|.
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchhhhhccccCCceeEEeecCCCcee
Confidence            34567777887  447777788888888888764322211111111100 000000000000111112234789999999


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ  303 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  303 (474)
                      .+.|+|+.++|+++++|+++++|.+.+..++..+++|..+|+++.|+|-| ++++++.|++-++|......      +..
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------PlR  529 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------PLR  529 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC------chh
Confidence            99999999999999999999999999999999999999999999999999 99999999999999877543      467


Q ss_pred             eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      .+.+|-+.|.|+.|+|+..++++|+.|.+|++||..++..+ +++.+|..+|  ++++|+|.+|++|+.||.|.+||+.+
T Consensus       530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            88899999999999999999999999999999999998775 7789999888  45677899999999999999999999


Q ss_pred             CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.  .+..+.+|++.|.++.|+.++.        +||+|+.|.+|++||+...
T Consensus       609 ~~--~v~~l~~Ht~ti~SlsFS~dg~--------vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  609 GS--LVKQLKGHTGTIYSLSFSRDGN--------VLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             Cc--chhhhhcccCceeEEEEecCCC--------EEEecCCCCeEEEEEchhh
Confidence            88  5678999999999999999999        9999999999999999765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-34  Score=270.58  Aligned_cols=236  Identities=28%  Similarity=0.411  Sum_probs=196.9

Q ss_pred             eeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee-------------------------------------
Q 047728          216 WIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV-------------------------------------  258 (474)
Q Consensus       216 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------------------------------------  258 (474)
                      +.+|...|.+++++.+...+++|+ .+.|++|+..+.++++++                                     
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~  447 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV  447 (888)
T ss_pred             eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence            457888999999998877666665 567999988877766533                                     


Q ss_pred             ---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC--cee----eeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          259 ---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK--GTK----HFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       259 ---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                         .+|.+.++.++..||+ .+++|+.|.+|++||......  +.+    .........-+..|.|+.++||+++|+++-
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence               3799999999999999 999999999999999764222  111    111223345577899999999999999999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      -|.++++|-+++-+-. -.+.||..+|+|+  +||+++++||+.|..|+||-++-+.  |-..+-+|...|.++.|.|+.
T Consensus       528 LdnTVkVyflDtlKFf-lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD--CHKS~fAHdDSvm~V~F~P~~  604 (888)
T KOG0306|consen  528 LDNTVKVYFLDTLKFF-LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD--CHKSFFAHDDSVMSVQFLPKT  604 (888)
T ss_pred             ccCeEEEEEecceeee-eeecccccceeEEeccCCcCeEEeccCCCceEEeccccch--hhhhhhcccCceeEEEEcccc
Confidence            9999999998876433 4567999998775  6799999999999999999999888  778899999999999999988


Q ss_pred             ccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      .        ++.++|.|+.|+-||-..-       ...+.+.+|...|.++    +.+|+|++++++|
T Consensus       605 ~--------~FFt~gKD~kvKqWDg~kF-------e~iq~L~~H~~ev~cL----av~~~G~~vvs~s  653 (888)
T KOG0306|consen  605 H--------LFFTCGKDGKVKQWDGEKF-------EEIQKLDGHHSEVWCL----AVSPNGSFVVSSS  653 (888)
T ss_pred             e--------eEEEecCcceEEeechhhh-------hhheeeccchheeeee----EEcCCCCeEEecc
Confidence            7        8999999999999997765       6778899999999888    8899999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-35  Score=252.72  Aligned_cols=295  Identities=23%  Similarity=0.386  Sum_probs=249.8

Q ss_pred             CCEEEEeeCCCcEEE---EeCC-ccccccccCccCEEEEEecCC--EEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728          120 GDLLYTGSDSKNIRV---WKNQ-REFSGFKSNSGLVKAIVISNE--KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       120 ~~~l~tgs~dg~v~v---wd~~-~~~~~~~~h~~~V~~i~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      ++-|+.|.-.+..+.   |=.. .+...+.+|..+|+.+.+.+.  .+++++.|++|++||..+++..            
T Consensus        76 ~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e------------  143 (406)
T KOG0295|consen   76 GDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE------------  143 (406)
T ss_pred             ccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh------------
Confidence            344555544444444   4333 456677889999999999955  5777888999999999999863            


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-cceeeeeeecCcceeEEEecC
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-YKCLESVIAHDDAVNSIVAGF  272 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~  272 (474)
                                          ..+++|++.|.+|+|+..|++|++++.|-.+++||..+ .+++..+.+|+..|.+++|.|
T Consensus       144 --------------------~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P  203 (406)
T KOG0295|consen  144 --------------------RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP  203 (406)
T ss_pred             --------------------hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe
Confidence                                24567999999999999999999999999999999987 678889999999999999999


Q ss_pred             CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec
Q 047728          273 DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH  351 (474)
Q Consensus       273 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  351 (474)
                      .| .+++++.|.+|+.|++.++-      +...+.+|...|..++.+.||.++++++.|.++++|-+.++.+. ..++.|
T Consensus       204 ~gd~ilS~srD~tik~We~~tg~------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k-~~lR~h  276 (406)
T KOG0295|consen  204 LGDHILSCSRDNTIKAWECDTGY------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK-AELREH  276 (406)
T ss_pred             cCCeeeecccccceeEEecccce------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh-hhhhcc
Confidence            99 99999999999999998664      57888999999999999999999999999999999999887543 455566


Q ss_pred             ceeeEEEE--ec---------------CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccce
Q 047728          352 KLAILCLV--TA---------------GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKR  414 (474)
Q Consensus       352 ~~~v~~~~--~~---------------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~  414 (474)
                      .-++-|++  |.               +.++.+++.|++|++||+.++.  |+.++.+|...|..++|+|.|+       
T Consensus       277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gk-------  347 (406)
T KOG0295|consen  277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGK-------  347 (406)
T ss_pred             ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe--EEEEEecccceeeeeEEcCCCe-------
Confidence            65554443  21               3599999999999999999997  8999999999999999999999       


Q ss_pred             EEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          415 WILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       415 ~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                       ||+++.+|+++++||+++.       .++..+..|...++++.|+-++-    ++++||
T Consensus       348 -yi~ScaDDktlrvwdl~~~-------~cmk~~~ah~hfvt~lDfh~~~p----~VvTGs  395 (406)
T KOG0295|consen  348 -YILSCADDKTLRVWDLKNL-------QCMKTLEAHEHFVTSLDFHKTAP----YVVTGS  395 (406)
T ss_pred             -EEEEEecCCcEEEEEeccc-------eeeeccCCCcceeEEEecCCCCc----eEEecc
Confidence             9999999999999999998       78888999999999997765543    666664

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=249.48  Aligned_cols=315  Identities=16%  Similarity=0.219  Sum_probs=257.8

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ..-+.+|..|++.|++++.+  .++++||+.|..-.||+.  +.....+.+|...|+++.|+  +.+|+||+.+|.|+||
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            34566889999999998755  779999999999999994  45677889999999999998  8899999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      +..++.......                                ..-..|.-+.|+|.+..|++|+.||.|.+|.+.++.
T Consensus       134 ~~stg~~~~~~~--------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~  181 (399)
T KOG0296|consen  134 KVSTGGEQWKLD--------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA  181 (399)
T ss_pred             EcccCceEEEee--------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence            999886543221                                144567889999999999999999999999999988


Q ss_pred             eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      ..+.+.+|..++++=.|.|+| +++++..||+|++||+.+...     .............++.++..+..++.|..++.
T Consensus       182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p-----~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP-----LHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce-----eEEecccccCcCCccccccccceeEeccCCcc
Confidence            889999999999999999999 999999999999999987653     11222222456788899999999999999999


Q ss_pred             EEEeecCcccccceee-------eecceeeEE-----EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEE
Q 047728          333 VNFWERELNLSHGGVL-------RGHKLAILC-----LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL  400 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~-------~~~~~~v~~-----~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l  400 (474)
                      +++-+..+++.+....       ..+...+-|     ++..=.+.|+|+.||+|.|||+...+   ++..-.|..+|+.+
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKL  333 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch---hheeccCCCceEEE
Confidence            9988876665442222       122222222     22234688999999999999998776   44566799999999


Q ss_pred             EEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      .|.+ ..        +|++++.||.|++||.+++       .+.....||...|..+    +++||++++++.|
T Consensus       334 ~w~~-t~--------~l~t~c~~g~v~~wDaRtG-------~l~~~y~GH~~~Il~f----~ls~~~~~vvT~s  387 (399)
T KOG0296|consen  334 KWLN-TD--------YLLTACANGKVRQWDARTG-------QLKFTYTGHQMGILDF----ALSPQKRLVVTVS  387 (399)
T ss_pred             EEcC-cc--------hheeeccCceEEeeecccc-------ceEEEEecCchheeEE----EEcCCCcEEEEec
Confidence            9999 44        8999999999999999999       6778899999999988    7788999999876

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-35  Score=272.37  Aligned_cols=292  Identities=21%  Similarity=0.301  Sum_probs=249.6

Q ss_pred             CCCcceeeeeeeeecCcEEEEEEcC---CEEEEeeCCCcEEEEeCCcc-ccccccCccCEEEEE-ec-CCEEEEEeCCCe
Q 047728           96 GFSPNVLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWKNQRE-FSGFKSNSGLVKAIV-IS-NEKIFSGHQDGK  169 (474)
Q Consensus        96 ~~~~~~~~~~l~~h~~~i~~~~~~~---~~l~tgs~dg~v~vwd~~~~-~~~~~~h~~~V~~i~-~~-~~~l~s~~~dg~  169 (474)
                      .....++.+.+.|..+.|..+.|-|   ++||.++..+.+|+|+.... -..+.+|+..|.++. ++ +..|+||+.|.+
T Consensus       309 d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~s  388 (775)
T KOG0319|consen  309 DEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKS  388 (775)
T ss_pred             EccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCce
Confidence            3355677788899999999999886   79999999999999986533 346789999999999 44 779999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEE
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWR  248 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd  248 (474)
                      +++|.++.+......                            .+...+|+..|.+++++.. ..+|++++.|+++++|+
T Consensus       389 vilWr~~~~~~~~~~----------------------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~  440 (775)
T KOG0319|consen  389 VILWRLNNNCSKSLC----------------------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD  440 (775)
T ss_pred             EEEEEecCCcchhhh----------------------------hhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence            999999554332111                            1234569999999999774 47899999999999999


Q ss_pred             cCCcce---------eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728          249 TSDYKC---------LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS  318 (474)
Q Consensus       249 ~~~~~~---------~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  318 (474)
                      +...+.         ..+...|+..|++++++|+. ++++|+.|.+.+||+++...      ....+.+|...|.++.|+
T Consensus       441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~------l~~vLsGH~RGvw~V~Fs  514 (775)
T KOG0319|consen  441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR------LLGVLSGHTRGVWCVSFS  514 (775)
T ss_pred             CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce------EEEEeeCCccceEEEEec
Confidence            976221         11334699999999999998 99999999999999998333      578899999999999999


Q ss_pred             CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728          319 PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP  396 (474)
Q Consensus       319 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~  396 (474)
                      |..+.+++++.|++|+||.+.+..+. +.+.+|...|+..++  ++..|++++.||.|++|++.+++  |+.++.+|.+.
T Consensus       515 ~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e--C~~tlD~H~Dr  591 (775)
T KOG0319|consen  515 KNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE--CEMTLDAHNDR  591 (775)
T ss_pred             cccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh--hhhhhhhccce
Confidence            99999999999999999999988776 678899999977665  79999999999999999999998  89999999999


Q ss_pred             eEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      |++++.++...        +++||+.||.|.+|.=.
T Consensus       592 vWaL~~~~~~~--------~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  592 VWALSVSPLLD--------MFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             eEEEeecCccc--------eeEecCCCeEEEEeecC
Confidence            99999999998        89999999999999643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.8e-34  Score=253.29  Aligned_cols=271  Identities=21%  Similarity=0.329  Sum_probs=234.6

Q ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEe-CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          111 GHIYSLAAA--GDLLYTGSDSKNIRVWK-NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd-~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      ..|++++++  |.+||+|+.||.++||+ .+..+..+..|.++|.++.|+  +++|++++.|+++.+||..++.....+.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            458999998  99999999999999998 557788899999999999999  7899999999999999998887665443


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV  265 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v  265 (474)
                      +                                |..+-.++.|-. ...+++++.|+.|+++.+....++.++.+|.+.|
T Consensus       316 ~--------------------------------~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V  362 (524)
T KOG0273|consen  316 F--------------------------------HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV  362 (524)
T ss_pred             e--------------------------------ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence            3                                666656788864 4578999999999999999999999999999999


Q ss_pred             eEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC---------CEEEEEcCCCcEEE
Q 047728          266 NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA---------AIVYCGSSDGLVNF  335 (474)
Q Consensus       266 ~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------~~l~~~~~dg~i~v  335 (474)
                      .++.|.|.+ +|++++.|++++||......      ....+..|...|..+.|+|.+         ..+++++.|++|++
T Consensus       363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~~------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l  436 (524)
T KOG0273|consen  363 NALKWNPTGSLLASCSDDGTLKIWSMGQSN------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL  436 (524)
T ss_pred             EEEEECCCCceEEEecCCCeeEeeecCCCc------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence            999999999 99999999999999976544      366788899999999999954         47999999999999


Q ss_pred             eecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          336 WERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       336 ~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      ||+..+.++ ..+..|..+|.++  +++|.++++|+.||.|.||+.++++  .+.... -.+.|..++|+.++.      
T Consensus       437 wdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~~-~~~~Ifel~Wn~~G~------  506 (524)
T KOG0273|consen  437 WDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSYQ-GTGGIFELCWNAAGD------  506 (524)
T ss_pred             EEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh--eeEeec-CCCeEEEEEEcCCCC------
Confidence            999988776 4566788888555  5679999999999999999999998  334444 456799999999998      


Q ss_pred             eEEEEEecCCCcEEEEEcc
Q 047728          414 RWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~~~  432 (474)
                        .|..+-.|+.+++-|++
T Consensus       507 --kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  507 --KLGACASDGSVCVLDLR  523 (524)
T ss_pred             --EEEEEecCCCceEEEec
Confidence              89999999999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.9e-34  Score=249.15  Aligned_cols=280  Identities=22%  Similarity=0.389  Sum_probs=236.7

Q ss_pred             eecCcEEEEEEcCCEEEEeeCCCcEEEEe-CCccccccccCccCEEEEEec--C---CEEEEEeCCCeEEEEecCCCCcc
Q 047728          108 REEGHIYSLAAAGDLLYTGSDSKNIRVWK-NQREFSGFKSNSGLVKAIVIS--N---EKIFSGHQDGKIRVWKVSSKDAS  181 (474)
Q Consensus       108 ~h~~~i~~~~~~~~~l~tgs~dg~v~vwd-~~~~~~~~~~h~~~V~~i~~~--~---~~l~s~~~dg~i~vwd~~~~~~~  181 (474)
                      -|.+-|.++.-.++.|++|+.||.+++|| .++....+.+|.++|.++++.  +   ..+++++.|.++++|.++.++..
T Consensus       103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~  182 (423)
T KOG0313|consen  103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK  182 (423)
T ss_pred             cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence            47788888888899999999999999999 457888999999999988885  3   35999999999999999887654


Q ss_pred             eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-----------
Q 047728          182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS-----------  250 (474)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-----------  250 (474)
                      ....                            ..-.||...|-+++..+++..+++|+.|.+|+||+..           
T Consensus       183 ~~~~----------------------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  183 VKAL----------------------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             hhHH----------------------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence            2211                            1123699999999999999999999999999999932           


Q ss_pred             --------------CcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728          251 --------------DYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA  316 (474)
Q Consensus       251 --------------~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  316 (474)
                                    ++.++.++.+|..+|.++.|.+.+.+++++.|.+|+.||+..++.       .........+.++.
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~-------~~~~~~~ksl~~i~  307 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL-------KSTLTTNKSLNCIS  307 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc-------eeeeecCcceeEee
Confidence                          123556788999999999999977999999999999999998764       23334456799999


Q ss_pred             EcCCCCEEEEEcCCCcEEEeecCcc--cccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeec
Q 047728          317 ISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICLSMLT  391 (474)
Q Consensus       317 ~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  391 (474)
                      .+|..++|++|+.|..|++||.+++  ......+.+|...|.++.+   +..+|++|+.|+++++||+++.... +..+.
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p-lydI~  386 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP-LYDIA  386 (423)
T ss_pred             cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc-ceeec
Confidence            9999999999999999999999876  4455677899998876665   3678999999999999999987643 78899


Q ss_pred             CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +|...|.++.|....         ++++||.|.+|+|+.-.
T Consensus       387 ~h~DKvl~vdW~~~~---------~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  387 GHNDKVLSVDWNEGG---------LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCCceEEEEeccCCc---------eEEeccCcceEEEeccc
Confidence            999999999998765         69999999999998754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=273.68  Aligned_cols=283  Identities=26%  Similarity=0.467  Sum_probs=237.3

Q ss_pred             eeeeeee-cCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--c--cccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          103 IGSLVRE-EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--R--EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       103 ~~~l~~h-~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ...+.+| ...|.++.++  |++|++++.|+.+++|+..  +  ....+.+|...|..++|+  +.++++++.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            5556555 5678886665  8999999999999999852  3  455668899999999998  6699999999999999


Q ss_pred             ecCCC-CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728          174 KVSSK-DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       174 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      |+... ...                                .++.+|...|++++|+|+++++++|+.|++|+|||++++
T Consensus       231 d~~~~~~~~--------------------------------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  231 DLKDDGRNL--------------------------------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             eccCCCeEE--------------------------------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence            99433 322                                245679999999999999999999999999999999999


Q ss_pred             ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc--cEEEEEEcCCCCEEEEEcC
Q 047728          253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC--AVTALAISPDAAIVYCGSS  329 (474)
Q Consensus       253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~  329 (474)
                      +++..+.+|.+.|.+++|++++ .|++++.|+.|++||+..+...    +......+..  ++++++|+|++.++++++.
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            9999999999999999999999 8999999999999999866532    1233334333  5999999999999999999


Q ss_pred             CCcEEEeecCcccccceeeeecceeeEEE-----EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-ccceEEEEEe
Q 047728          330 DGLVNFWERELNLSHGGVLRGHKLAILCL-----VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-SGPVKCLAVE  403 (474)
Q Consensus       330 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~  403 (474)
                      |+.+++||+...... ....+|...+.|+     ...+.++++|+.|+.|++||..++.  .+..+.+| ...+..+.++
T Consensus       355 d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~~~~~~~~~~~  431 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG--ILQRLEGHSKAAVSDLSSH  431 (456)
T ss_pred             CCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc--hhhhhcCCCCCceeccccC
Confidence            999999999987655 4445555543333     4479999999999999999999876  46788899 8999999999


Q ss_pred             eCCccccccceEEEEEec--CCCcEEEEEcc
Q 047728          404 KDDESLSREKRWILYSGS--LDKSVKMWRVS  432 (474)
Q Consensus       404 ~~~~~~~~~~~~~l~s~s--~Dg~i~vw~~~  432 (474)
                      +...        ++++++  .|+.|++|...
T Consensus       432 ~~~~--------~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  432 PTEN--------LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCcC--------eeeecCcCCCceEEEecCC
Confidence            9998        899888  79999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8e-33  Score=254.50  Aligned_cols=279  Identities=33%  Similarity=0.555  Sum_probs=232.7

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~  176 (474)
                      ++++.+|++.|.+++++  +++|++++.||.|++|+..  +....+..|...+..+.|.  ++.|++++.||.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            45678999999999987  6899999999999999854  3556778899999899998  4589999999999999998


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE  256 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  256 (474)
                      .++...                                .+..|...|.++.|++++.++++++.|+.|++||+.+++...
T Consensus        82 ~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  129 (289)
T cd00200          82 TGECVR--------------------------------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT  129 (289)
T ss_pred             cccceE--------------------------------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence            764321                                223478899999999998888888889999999999999999


Q ss_pred             eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728          257 SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF  335 (474)
Q Consensus       257 ~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v  335 (474)
                      .+..|...+.++.++|++ ++++++.|+.|++||++....      ......+...+.+++|+|+++.+++++.++.|++
T Consensus       130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  203 (289)
T cd00200         130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC------VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL  203 (289)
T ss_pred             EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc------ceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence            998899999999999988 666666699999999975432      3444577789999999999999999999999999


Q ss_pred             eecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          336 WERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       336 ~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      ||++...... .+..|...+.+  +.+++.++++++.|+.|++||+.+++  ....+..|...|.+++|++++.      
T Consensus       204 ~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~------  274 (289)
T cd00200         204 WDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGK------  274 (289)
T ss_pred             EECCCCceec-chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEEECCCCC------
Confidence            9998765443 33355555544  45567888888889999999998776  4566778999999999999988      


Q ss_pred             eEEEEEecCCCcEEEEE
Q 047728          414 RWILYSGSLDKSVKMWR  430 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~  430 (474)
                        +|++++.||.|++|+
T Consensus       275 --~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 --RLASGSADGTIRIWD  289 (289)
T ss_pred             --EEEEecCCCeEEecC
Confidence              899999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=229.64  Aligned_cols=280  Identities=20%  Similarity=0.318  Sum_probs=235.2

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV  172 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v  172 (474)
                      |...+..|..|+++|.++.++  |+|.+|++.|.+|++|+..  ..++++.+|...|..++..  +..+++|+.|..+.+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence            345667889999999999998  9999999999999999944  6788999999999988876  779999999999999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-  251 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-  251 (474)
                      ||+++++...                                .|.+|...|+.+.|+.+...+++|+.|.++++||.++ 
T Consensus        86 wDV~TGkv~R--------------------------------r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~  133 (307)
T KOG0316|consen   86 WDVNTGKVDR--------------------------------RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR  133 (307)
T ss_pred             EEcccCeeee--------------------------------ecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence            9999997653                                4567999999999999999999999999999999875 


Q ss_pred             -cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728          252 -YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD  330 (474)
Q Consensus       252 -~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  330 (474)
                       .++++.+....+.|.++.... ..+++|+.||+++.||++.+..        ...-...+|++++|+++++..++++.|
T Consensus       134 s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l--------~sDy~g~pit~vs~s~d~nc~La~~l~  204 (307)
T KOG0316|consen  134 SFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTL--------SSDYFGHPITSVSFSKDGNCSLASSLD  204 (307)
T ss_pred             CCCccchhhhhcCceeEEEecc-cEEEeeccCCcEEEEEeeccee--------ehhhcCCcceeEEecCCCCEEEEeecc
Confidence             567888888889999998863 3899999999999999997643        223345689999999999999999999


Q ss_pred             CcEEEeecCcccccceeeeecceee----EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc-eEEEEEeeC
Q 047728          331 GLVNFWERELNLSHGGVLRGHKLAI----LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP-VKCLAVEKD  405 (474)
Q Consensus       331 g~i~v~d~~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~~  405 (474)
                      +++++.|-++++.+ ....+|...-    .|+......+++|++||.|.+||+....  .+..+..+... |++++++|.
T Consensus       205 stlrLlDk~tGklL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  205 STLRLLDKETGKLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVSTVIVTDLSCHPT  281 (307)
T ss_pred             ceeeecccchhHHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCceeEEeeecccC
Confidence            99999999998766 5566776544    4555568899999999999999998877  45677777777 899999999


Q ss_pred             CccccccceEEEEEecCCCcEEEEEc
Q 047728          406 DESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      ..        -|+++.. +.+..|.-
T Consensus       282 ~~--------~f~~A~~-~~~~~~~~  298 (307)
T KOG0316|consen  282 MD--------DFITATG-HGDLFWYQ  298 (307)
T ss_pred             cc--------ceeEecC-Cceeceee
Confidence            87        4666543 44666643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-33  Score=266.94  Aligned_cols=271  Identities=23%  Similarity=0.364  Sum_probs=226.8

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc---------------------------------ccc
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR---------------------------------EFS  142 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~---------------------------------~~~  142 (474)
                      .|..+.-++..-...+.|..++  +.+||.|-.|..|++|....                                 ...
T Consensus       366 lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  366 LPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             CCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence            4555666666666678887776  67999999999999996320                                 123


Q ss_pred             ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728          143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF  220 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  220 (474)
                      .+.+|.++|..+.|+  .++|++++.|+++|+|.+++..+..                                .+.+|.
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------------------------------~y~GH~  493 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------------------------------IYKGHL  493 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--------------------------------EecCCC
Confidence            467999999999998  5699999999999999999886653                                456799


Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      .+|+++.|+|.|-++|+++.|++-++|......+++.+.+|-..|.|+.|+|+. ++++|+.|.+||+||..++..    
T Consensus       494 ~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----  569 (707)
T KOG0263|consen  494 APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----  569 (707)
T ss_pred             cceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----
Confidence            999999999999999999999999999999999999999999999999999999 999999999999999987764    


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEE
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIW  377 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iw  377 (474)
                        ...+.+|.++|.+++|+|+|++|++|+.||.|.+||+.++..+ ..+.+|...+.++  +.+|..|++|+.|.+|++|
T Consensus       570 --VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  570 --VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW  646 (707)
T ss_pred             --EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence              6777899999999999999999999999999999999988665 4566788777554  5589999999999999999


Q ss_pred             ECCCCceE----------------------EEEeecCCccceEEEEEeeCCc
Q 047728          378 RRKENEHI----------------------CLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       378 d~~~~~~~----------------------~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      |+......                      ++..+.....+|.++.|...+.
T Consensus       647 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl  698 (707)
T KOG0263|consen  647 DLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL  698 (707)
T ss_pred             EchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce
Confidence            98643211                      2344444556777777766554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.7e-32  Score=285.60  Aligned_cols=279  Identities=15%  Similarity=0.245  Sum_probs=223.4

Q ss_pred             eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc----------ccccccCccCEEEEEec---CCEEEEEeCCCe
Q 047728          105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE----------FSGFKSNSGLVKAIVIS---NEKIFSGHQDGK  169 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~----------~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~  169 (474)
                      .+..|.+.|.+++|+  |++||+|+.|+.|+||+....          ...+ .+...|.+++|+   +.+|++++.||+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence            456689999999987  889999999999999986421          1112 234678899986   578999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEE
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWR  248 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd  248 (474)
                      |++||+.+++...                                .+.+|...|++++|+| ++.+|++|+.|++|++||
T Consensus       557 v~lWd~~~~~~~~--------------------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd  604 (793)
T PLN00181        557 VQVWDVARSQLVT--------------------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS  604 (793)
T ss_pred             EEEEECCCCeEEE--------------------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence            9999998765331                                2345999999999997 788999999999999999


Q ss_pred             cCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728          249 TSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      ++++..+..+..+ ..+.++.|.+ ++ .+++|+.||.|++||++....     ......+|...|.++.|. ++.+|++
T Consensus       605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs  677 (793)
T PLN00181        605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVS  677 (793)
T ss_pred             CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEE
Confidence            9999988888754 6789999964 45 899999999999999985432     234556889999999997 7789999


Q ss_pred             EcCCCcEEEeecCccc-----ccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEE-----------
Q 047728          327 GSSDGLVNFWERELNL-----SHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLS-----------  388 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~-----~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-----------  388 (474)
                      ++.|+.|++||++...     .....+.+|...+  +++++++.+|++|+.|+.|++|+..........           
T Consensus       678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence            9999999999997531     2234556676544  667778999999999999999998655422111           


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      ....|...|.+++|++++.        +|++|+.||.|+||++
T Consensus       758 ~~~~~~~~V~~v~ws~~~~--------~lva~~~dG~I~i~~~  792 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSS--------TLVAANSTGNIKILEM  792 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCC--------eEEEecCCCcEEEEec
Confidence            1234556799999999998        8999999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=253.67  Aligned_cols=268  Identities=24%  Similarity=0.383  Sum_probs=223.9

Q ss_pred             ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      ...|..|.|.  |+.|++|+..|.+.+|+...-...                                .+++.|..+|++
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--------------------------------tilQaHDs~Vr~  143 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--------------------------------TILQAHDSPVRT  143 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--------------------------------HHhhhhccccee
Confidence            4578889997  679999999999999997432211                                234569999999


Q ss_pred             EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728          226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ  303 (474)
Q Consensus       226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  303 (474)
                      +.|++++.++++|..+|.|++|+..- ..+..+.+|. ..|++++|+|+. .+++++.||+|+|||......      ..
T Consensus       144 m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke------e~  216 (464)
T KOG0284|consen  144 MKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE------ER  216 (464)
T ss_pred             EEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch------hh
Confidence            99999999999999999999999754 4445555554 899999999987 999999999999999986654      45


Q ss_pred             eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCC
Q 047728          304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      .+.+|.-.|.+++|+|...+|++++.|..|++||.+++.++ ..+..|+..|+.+.+  ++++|++++.|..+++||+++
T Consensus       217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl-~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL-ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh-hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence            56899999999999999999999999999999999999877 466789888876654  689999999999999999996


Q ss_pred             CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      .+  .+..+.+|...|+++.|+|-...       +|.+|+.||.|..|.+...++..      ..-.+|...|.+++|+|
T Consensus       296 mk--El~~~r~Hkkdv~~~~WhP~~~~-------lftsgg~Dgsvvh~~v~~~~p~~------~i~~AHd~~iwsl~~hP  360 (464)
T KOG0284|consen  296 MK--ELFTYRGHKKDVTSLTWHPLNES-------LFTSGGSDGSVVHWVVGLEEPLG------EIPPAHDGEIWSLAYHP  360 (464)
T ss_pred             hH--HHHHhhcchhhheeecccccccc-------ceeeccCCCceEEEecccccccc------CCCcccccceeeeeccc
Confidence            55  46789999999999999998876       89999999999999998443322      22346889999996666


Q ss_pred             CCCcCCceeeccC
Q 047728          462 SFSSQGRICQKRS  474 (474)
Q Consensus       462 ~~s~Dg~~l~~~s  474 (474)
                      -    |.+|.++|
T Consensus       361 l----Ghil~tgs  369 (464)
T KOG0284|consen  361 L----GHILATGS  369 (464)
T ss_pred             c----ceeEeecC
Confidence            4    77776664

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.9e-33  Score=237.04  Aligned_cols=271  Identities=23%  Similarity=0.342  Sum_probs=228.3

Q ss_pred             CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccc
Q 047728          137 NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNG  214 (474)
Q Consensus       137 ~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (474)
                      ...+...+.+|.+.|..+.|+  +..|++|+.|..|.+|++.......                               .
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------------------------------~   84 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-------------------------------W   84 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-------------------------------e
Confidence            345566788999999999998  6799999999999999976543221                               2


Q ss_pred             eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEccc
Q 047728          215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~  292 (474)
                      ++.+|.++|..+.|.+|++.|++++.|.+|+.||+++|+++..++.|...|+.+.-..-|  ++.+++.|+++++||++.
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            345699999999999999999999999999999999999999999999999999865556  788999999999999995


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeC
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSA  370 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~  370 (474)
                      ...       .........++++.|..++..+.+|+-|+.|++||++.+... .++.+|..+|+.+  +++|.++.+-+.
T Consensus       165 k~~-------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsM  236 (338)
T KOG0265|consen  165 KEA-------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSM  236 (338)
T ss_pred             cch-------hhccccceeEEEEEecccccceeeccccCceeeeccccCcce-EEeecccCceeeEEeccCCCccccccc
Confidence            542       233344567999999999999999999999999999877654 6788999888554  578999999999


Q ss_pred             CCcEEEEECCCC--ceEEEEeecCCcc----ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccc
Q 047728          371 DMSICIWRRKEN--EHICLSMLTGHSG----PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQ  444 (474)
Q Consensus       371 dg~i~iwd~~~~--~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~  444 (474)
                      |.++++||++..  ...++..+.+|..    ....++|+|++.        .+..|+.|..+.+||....       ...
T Consensus       237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~--------~i~ags~dr~vyvwd~~~r-------~~l  301 (338)
T KOG0265|consen  237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT--------KITAGSADRFVYVWDTTSR-------RIL  301 (338)
T ss_pred             cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC--------ccccccccceEEEeecccc-------cEE
Confidence            999999999743  2234666666543    356789999999        8999999999999998775       677


Q ss_pred             ccccCCCCCCCccccCC
Q 047728          445 HPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       445 ~~~~~~~~~v~~l~~~p  461 (474)
                      ..++||.+.|+.+.|+|
T Consensus       302 yklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  302 YKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             EEcCCcceeEEEeeecC
Confidence            88999999999997666

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.1e-32  Score=244.45  Aligned_cols=326  Identities=18%  Similarity=0.254  Sum_probs=260.8

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCC----CcEEEEeCCccccccccCccCEEEEEec---CCEEEEEeCCCe
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDS----KNIRVWKNQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGK  169 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~d----g~v~vwd~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~  169 (474)
                      ...+..+++--.|+|..++++  ++.|++.++.    |.+.+||.+..+-.+.+|...|+++.|.   +=+++||+.|++
T Consensus        92 ~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~  171 (603)
T KOG0318|consen   92 EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNT  171 (603)
T ss_pred             ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCe
Confidence            345666777788999999987  5566555442    3478899999999999999999999998   448999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      |.+|+=..-+..                                ..+..|..-|.|+.|+|||.++++++.||+|.+||-
T Consensus       172 v~ffeGPPFKFk--------------------------------~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG  219 (603)
T KOG0318|consen  172 VAFFEGPPFKFK--------------------------------SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG  219 (603)
T ss_pred             EEEeeCCCeeee--------------------------------ecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence            999975443221                                123449999999999999999999999999999999


Q ss_pred             CCcceeeeee---ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee--------------------------
Q 047728          250 SDYKCLESVI---AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH--------------------------  299 (474)
Q Consensus       250 ~~~~~~~~~~---~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------  299 (474)
                      .+++.+..+.   +|++.|.++.|+||+ .+++++.|.+++|||+.........                          
T Consensus       220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~  299 (603)
T KOG0318|consen  220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS  299 (603)
T ss_pred             CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence            9999999997   899999999999999 9999999999999998643211100                          


Q ss_pred             -----------eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC-CEEEE
Q 047728          300 -----------FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG-NLVFS  367 (474)
Q Consensus       300 -----------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s  367 (474)
                                 .......+|...|++++.++++++|++|+.||.|.-||...+..-...-.+|...|.++...+ ..+++
T Consensus       300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence                       023445688999999999999999999999999999999988766545578999999998876 88999


Q ss_pred             EeCCCcEEEEECCCCc------------eEEE-----------------EeecCCc--------cceEEEEEeeCCcccc
Q 047728          368 GSADMSICIWRRKENE------------HICL-----------------SMLTGHS--------GPVKCLAVEKDDESLS  410 (474)
Q Consensus       368 gs~dg~i~iwd~~~~~------------~~~~-----------------~~~~~h~--------~~v~~l~~~~~~~~~~  410 (474)
                      .+.|.++++.++....            +..+                 ..+..+.        -...+++++|++.   
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~---  456 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS---  456 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC---
Confidence            9999999999774221            1111                 1111121        2457899999998   


Q ss_pred             ccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                           .++.|+.|+.|+||.+.....     .....+..|.++|+.+    +|||||.+|+.+
T Consensus       457 -----~vaVGG~Dgkvhvysl~g~~l-----~ee~~~~~h~a~iT~v----aySpd~~yla~~  505 (603)
T KOG0318|consen  457 -----EVAVGGQDGKVHVYSLSGDEL-----KEEAKLLEHRAAITDV----AYSPDGAYLAAG  505 (603)
T ss_pred             -----EEEEecccceEEEEEecCCcc-----cceeeeecccCCceEE----EECCCCcEEEEe
Confidence                 899999999999999987643     2233456799999999    899999999764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=257.85  Aligned_cols=277  Identities=21%  Similarity=0.357  Sum_probs=234.4

Q ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCC-CeEEEEecCCCCccee
Q 047728          111 GHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQD-GKIRVWKVSSKDASIH  183 (474)
Q Consensus       111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d-g~i~vwd~~~~~~~~~  183 (474)
                      ..|+|.++.  -++||+|=..|...+|+..  ..+..+.-....|..++|+  |+.|+.|+.. |.+-||++.+...+..
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK  345 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK  345 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence            678888888  5589999999999999865  4566666667889999998  9999988755 8999999988765432


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD  263 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  263 (474)
                                                      .++|...+++++++|||+++++|++||.|+|||..++-|+.++..|..
T Consensus       346 --------------------------------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts  393 (893)
T KOG0291|consen  346 --------------------------------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS  393 (893)
T ss_pred             --------------------------------ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence                                            246999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-cEEEeecCcc
Q 047728          264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-LVNFWERELN  341 (474)
Q Consensus       264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~  341 (474)
                      .|+.+.|+..+ .+++.+-||+|+.||+.....     .............|++.+|.|.++.+|+.|. .|.+|+++++
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG  468 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG  468 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccce-----eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence            99999999999 899999999999999875443     2222233445578999999999999999887 4999999999


Q ss_pred             cccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728          342 LSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS  419 (474)
Q Consensus       342 ~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s  419 (474)
                      +.+ .++.+|.++|.+  |+|.+..|++|+.|.+|++||+-..... ..++ .+...+.+++|.|+|+        -|++
T Consensus       469 qll-DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl-~i~sdvl~vsfrPdG~--------elaV  537 (893)
T KOG0291|consen  469 QLL-DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETL-EIRSDVLAVSFRPDGK--------ELAV  537 (893)
T ss_pred             eee-ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeE-eeccceeEEEEcCCCC--------eEEE
Confidence            765 788999999975  7778999999999999999999655321 2333 3667899999999999        8999


Q ss_pred             ecCCCcEEEEEccCCC
Q 047728          420 GSLDKSVKMWRVSEQA  435 (474)
Q Consensus       420 ~s~Dg~i~vw~~~~~~  435 (474)
                      +..||.|.+||+....
T Consensus       538 aTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  538 ATLDGQITFFDIKEAV  553 (893)
T ss_pred             EEecceEEEEEhhhce
Confidence            9999999999998753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-33  Score=242.67  Aligned_cols=249  Identities=24%  Similarity=0.420  Sum_probs=220.3

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      +....+.+|.+.|.|++++  ++.+++|+.|++|+|||+.+++...                                .+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------------------------------tl  189 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------------------------------TL  189 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------------------------------ee
Confidence            4456788999999999998  6799999999999999999997653                                44


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      .+|...|..+++++-..+|++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...
T Consensus       190 tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~  269 (460)
T KOG0285|consen  190 TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS  269 (460)
T ss_pred             cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence            5699999999999999999999999999999999999999999999999999999987 999999999999999997664


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCc
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMS  373 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~  373 (474)
                            ...+.+|..+|..+.+.|-...+++|+.|++|++||++.++.. ..+..|+..+.  ++.|....+++++.| .
T Consensus       270 ------V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~d-n  341 (460)
T KOG0285|consen  270 ------VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPD-N  341 (460)
T ss_pred             ------EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCc-c
Confidence                  6788899999999999998999999999999999999988766 34556776664  555677888888877 5


Q ss_pred             EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL  438 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~  438 (474)
                      |+-|++..+.  .+..+.+|...|++++...|+         ++++|++.|.+.+||.+++-..+
T Consensus       342 ik~w~~p~g~--f~~nlsgh~~iintl~~nsD~---------v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  342 IKQWKLPEGE--FLQNLSGHNAIINTLSVNSDG---------VLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             ceeccCCccc--hhhccccccceeeeeeeccCc---------eEEEcCCceEEEEEecCcCcccc
Confidence            9999998887  456699999999999999987         79999999999999999885443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-32  Score=224.94  Aligned_cols=275  Identities=21%  Similarity=0.327  Sum_probs=224.7

Q ss_pred             ccccccCccCEEEEEecCC---EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVISNE---KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      +..+++|.+.|..++|++.   .|++|+.|..||+|+...+.....+.+                            +-.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v----------------------------ld~   58 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV----------------------------LDD   58 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEe----------------------------ccc
Confidence            4567889999999999944   799999999999999985332211111                            112


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcC--CcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS--DYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~  294 (474)
                      +|+..|++++|+|.|++|++|+.|.++.||.-.  +.+++..+.+|...|.+++|+++| +|++++.|..|-||.+....
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            499999999999999999999999999999755  357899999999999999999999 99999999999999987332


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC--cccccceeeeecceeeEEEEe--cCCEEEEEeC
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE--LNLSHGGVLRGHKLAILCLVT--AGNLVFSGSA  370 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~  370 (474)
                         ...+...+..|...|..+.|+|...+|++++.|.+|++|+-.  ......+.+.+|...+.++.+  .|..|++++.
T Consensus       139 ---Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  139 ---EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             ---cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence               344677889999999999999999999999999999999765  334556778889877766654  5899999999


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH  450 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~  450 (474)
                      |++++||.....      ....|..++..+.|. ++         .|++++.|+.|++|.-......+...........|
T Consensus       216 D~tv~Iw~~~~~------~~~~~sr~~Y~v~W~-~~---------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH  279 (312)
T KOG0645|consen  216 DGTVSIWRLYTD------LSGMHSRALYDVPWD-NG---------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH  279 (312)
T ss_pred             CcceEeeeeccC------cchhcccceEeeeec-cc---------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc
Confidence            999999986532      123477899999999 44         79999999999999987654434343444566679


Q ss_pred             CCCCCccccCCC
Q 047728          451 GVAPNSLPYAPS  462 (474)
Q Consensus       451 ~~~v~~l~~~p~  462 (474)
                      ...|+++.|+|.
T Consensus       280 e~dVNsV~w~p~  291 (312)
T KOG0645|consen  280 EVDVNSVQWNPK  291 (312)
T ss_pred             ccccceEEEcCC
Confidence            999999999983

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-32  Score=237.58  Aligned_cols=289  Identities=16%  Similarity=0.212  Sum_probs=234.0

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ......+.+|+..|.|+.|+  |.|||||..+|.|+||+..  .....+...-..|.-+.|+  ...|+.|+.||.+.+|
T Consensus        96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw  175 (399)
T KOG0296|consen   96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW  175 (399)
T ss_pred             CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence            45788899999999999887  8899999999999999854  3444444456667788888  6689999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      .+.++...                                .++.+|..++++=.|.|+|++++++..||+|++||..+++
T Consensus       176 ~ip~~~~~--------------------------------kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  176 QIPSQALC--------------------------------KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             ECCCccee--------------------------------eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence            99885321                                3567799999999999999999999999999999999999


Q ss_pred             eeeeeeec-CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee--eeeeeecccccEEEEE---EcCCCCEEEE
Q 047728          254 CLESVIAH-DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF--FSQTLLKQECAVTALA---ISPDAAIVYC  326 (474)
Q Consensus       254 ~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~l~---~~~~~~~l~~  326 (474)
                      ++..+... .....++.++..+ .++.|+.++.+++-+...++......  .......++..+.++.   ++..-.+.|+
T Consensus       224 p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~  303 (399)
T KOG0296|consen  224 PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAAC  303 (399)
T ss_pred             eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhc
Confidence            99888642 3456788888887 88889999988888755433211111  1112223444444444   4556678999


Q ss_pred             EcCCCcEEEeecCcccccceeeeecceeeEEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          327 GSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      |+.||+|.|||+.....  +....|...|+.+.+.+ .+|++++.+|.|+.||.++++  ++..+.+|..+|.+++++|+
T Consensus       304 G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  304 GSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             ccccceEEEEecccchh--heeccCCCceEEEEEcCcchheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCC
Confidence            99999999999986643  45567888899988876 899999999999999999999  67899999999999999999


Q ss_pred             CccccccceEEEEEecCCCcEEEEEcc
Q 047728          406 DESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      .+        +++|+|.|++.+||++.
T Consensus       380 ~~--------~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  380 KR--------LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             Cc--------EEEEecCCCeEEEEecC
Confidence            99        99999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-32  Score=226.48  Aligned_cols=284  Identities=16%  Similarity=0.254  Sum_probs=237.2

Q ss_pred             eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCC
Q 047728          105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      -|++|+.+++.+.++  |++|.+++.|.++.||-  .++.+-++.+|.++|.|+..+  .++++||+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            367899999999998  99999999999999995  567889999999999999987  679999999999999999999


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-----CCcEEEEEcC---
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-----DKTFKVWRTS---  250 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~---  250 (474)
                      +++....                                 -..+|..+.|++++++++...+     .+.|.++|++   
T Consensus        85 k~la~~k---------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   85 KQLATWK---------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             cEEEEee---------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            8765443                                 4558999999999998887764     3679999998   


Q ss_pred             ----CcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          251 ----DYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       251 ----~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                          ..+++..+..+...++...|.|-+ .|++|..||.|.+||++++..     .......|...|+.++++++..+++
T Consensus       132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-----~v~s~~~h~~~Ind~q~s~d~T~Fi  206 (327)
T KOG0643|consen  132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE-----LVDSDEEHSSKINDLQFSRDRTYFI  206 (327)
T ss_pred             hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-----eeechhhhccccccccccCCcceEE
Confidence                455677888888999999999998 999999999999999997654     4566678888999999999999999


Q ss_pred             EEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEE--CCCCce----------EEEEeecCC
Q 047728          326 CGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWR--RKENEH----------ICLSMLTGH  393 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd--~~~~~~----------~~~~~~~~h  393 (474)
                      +++.|.+-++||.++-..+............+++|..+.++.|+.....-+=-  .+.++.          ..+...++|
T Consensus       207 T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH  286 (327)
T KOG0643|consen  207 TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH  286 (327)
T ss_pred             ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence            99999999999999887777776667777788888777777766433222221  122211          024567899


Q ss_pred             ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      -++|++++|+|+|+        ..++|++||.|++..+...
T Consensus       287 FGPINsvAfhPdGk--------sYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  287 FGPINSVAFHPDGK--------SYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             ccCcceeEECCCCc--------ccccCCCCceEEEEEeccc
Confidence            99999999999999        7999999999999977653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-32  Score=224.91  Aligned_cols=267  Identities=20%  Similarity=0.297  Sum_probs=228.3

Q ss_pred             cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ....+..+.++|.++.|+  |++.++++.|.+|++|+.-.+.++                                ..+.
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--------------------------------ktYs   56 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--------------------------------KTYS   56 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--------------------------------eeec
Confidence            456678899999999998  889999999999999998877654                                3566


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +|..+|..++.+.|+..|++|+.|..|.+||+.+|+.++.+.+|...|+.+.|+.+. .+++|+.|..+++||-+.....
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence            799999999999999999999999999999999999999999999999999999888 9999999999999998865432


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                          +.+.+......|.++.+.  +..|++|+.||+++.||++.+... .-..+|....++++++++..++++.|+++++
T Consensus       137 ----PiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrL  209 (307)
T KOG0316|consen  137 ----PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRL  209 (307)
T ss_pred             ----ccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence                456666677788888775  678999999999999999988654 3455888899999999999999999999999


Q ss_pred             EECCCCceEEEEeecCCccceE--EEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCC-
Q 047728          377 WRRKENEHICLSMLTGHSGPVK--CLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVA-  453 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-  453 (474)
                      .|-.+++  .+...++|...-.  ..++.....        .+++|++||.|.+||+.+.       .....+..+... 
T Consensus       210 lDk~tGk--lL~sYkGhkn~eykldc~l~qsdt--------hV~sgSEDG~Vy~wdLvd~-------~~~sk~~~~~~v~  272 (307)
T KOG0316|consen  210 LDKETGK--LLKSYKGHKNMEYKLDCCLNQSDT--------HVFSGSEDGKVYFWDLVDE-------TQISKLSVVSTVI  272 (307)
T ss_pred             cccchhH--HHHHhcccccceeeeeeeecccce--------eEEeccCCceEEEEEeccc-------eeeeeeccCCcee
Confidence            9999998  5678888877543  445555555        8999999999999999887       455556666666 


Q ss_pred             CCccccCCC
Q 047728          454 PNSLPYAPS  462 (474)
Q Consensus       454 v~~l~~~p~  462 (474)
                      +.++.++|.
T Consensus       273 v~dl~~hp~  281 (307)
T KOG0316|consen  273 VTDLSCHPT  281 (307)
T ss_pred             EEeeecccC
Confidence            788888885

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-32  Score=253.58  Aligned_cols=245  Identities=24%  Similarity=0.371  Sum_probs=220.8

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      +.+..++..|.++.++  ...++++-.+|.|.||+.++...+..+.+                                .
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------------------------------~   54 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------------------------------S   54 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--------------------------------c
Confidence            3455689999999999  56899999999999999999887765554                                4


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      .-+|++..|-...+.+++|++|..|+||+..+++.+..+.+|.+.|++++.+|.. ++++++.|-+|++||.+..     
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-----  129 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-----  129 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-----
Confidence            4578889999989999999999999999999999999999999999999999998 9999999999999998743     


Q ss_pred             eeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe----cCCEEEEEeCCCc
Q 047728          299 HFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT----AGNLVFSGSADMS  373 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~sgs~dg~  373 (474)
                      ..+.+.+.+|...|.+++|+| |.+.+++++-|++|++|.+...... ..+.+|...|.|+..    +..+|++|+.|.+
T Consensus       130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-FTLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc-eeeeccccCcceEEeccCCCcceEEecCCCce
Confidence            337889999999999999999 7789999999999999999877654 567799999988886    3459999999999


Q ss_pred             EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |+|||.++..  |+.++.+|...|..+.|+|.-.        +++||++||++|||+-.+-
T Consensus       209 iKvWDyQtk~--CV~TLeGHt~Nvs~v~fhp~lp--------iiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  209 IKVWDYQTKS--CVQTLEGHTNNVSFVFFHPELP--------IIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             EEEeecchHH--HHHHhhcccccceEEEecCCCc--------EEEEecCCccEEEecCcce
Confidence            9999999988  8999999999999999999998        9999999999999997764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.9e-32  Score=261.76  Aligned_cols=276  Identities=28%  Similarity=0.457  Sum_probs=243.9

Q ss_pred             ecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccc-cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728          109 EEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSG-FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       109 h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~-~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~  183 (474)
                      |...+.+..+.++++++++.|++|++||..  ..+.. +.+|.+.|.++++.  +++|++|+.|.++++||..++++.. 
T Consensus       207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-  285 (537)
T KOG0274|consen  207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-  285 (537)
T ss_pred             CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-
Confidence            456688888999999999999999999944  44444 89999999999999  8999999999999999999998763 


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD  263 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  263 (474)
                                                     ++.+|...|.++...  ...+++|+.|.+|++|++.++.++..+.+|.+
T Consensus       286 -------------------------------~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  286 -------------------------------SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             -------------------------------EecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccc
Confidence                                           456799999999775  45788899999999999999999999999999


Q ss_pred             ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc
Q 047728          264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS  343 (474)
Q Consensus       264 ~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~  343 (474)
                      +|+++... .+.+++|+.|++|++||+...+      +...+.+|...|.++.+.+. ..+++|+.|+.|++||+++...
T Consensus       333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~  404 (537)
T KOG0274|consen  333 PVNCVQLD-EPLLVSGSYDGTVKVWDPRTGK------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK  404 (537)
T ss_pred             cEEEEEec-CCEEEEEecCceEEEEEhhhce------eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence            99999998 5599999999999999998544      68888999999999988876 8999999999999999999844


Q ss_pred             cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecC
Q 047728          344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      ....+.+|...+..+...+++|++++.|++|++||..+++  ++.++.+ |.+.|..+++.  ..        .+++++.
T Consensus       405 c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~~~--~~--------~il~s~~  472 (537)
T KOG0274|consen  405 CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALALG--KE--------EILCSSD  472 (537)
T ss_pred             hhhhhcCCcccccccccccceeEeccccccEEEeecccCc--eeeeeccCCcccEEEeecC--cc--------eEEEEec
Confidence            4577889999999999999999999999999999999988  6778887 77899999887  23        6899999


Q ss_pred             CCcEEEEEccCCCCCC
Q 047728          423 DKSVKMWRVSEQAPPL  438 (474)
Q Consensus       423 Dg~i~vw~~~~~~~~~  438 (474)
                      ||++++||++.++...
T Consensus       473 ~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  473 DGSVKLWDLRSGTLIR  488 (537)
T ss_pred             CCeeEEEecccCchhh
Confidence            9999999999986543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.7e-33  Score=227.83  Aligned_cols=283  Identities=19%  Similarity=0.316  Sum_probs=240.1

Q ss_pred             eeeeecCcEEEEEEc-----CCEEEEeeCCCcEEEE--eCCccccccccCccCEEEEEecCC--EEEEEeCCCeEEEEec
Q 047728          105 SLVREEGHIYSLAAA-----GDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNE--KIFSGHQDGKIRVWKV  175 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~-----~~~l~tgs~dg~v~vw--d~~~~~~~~~~h~~~V~~i~~~~~--~l~s~~~dg~i~vwd~  175 (474)
                      +-.+|+.+|..++|+     |-+|++++.||.-.+-  |++.-+-+|.+|.++|.....+.+  +.++++.|=+-+|||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            457899999998876     6699999999987666  477889999999999999999844  6788999999999999


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-e
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-C  254 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~  254 (474)
                      -++..+..+.                                 |..-|.+++|+.|.++|++|+.+..++|||++..+ +
T Consensus        89 ~tgdelhsf~---------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap  135 (334)
T KOG0278|consen   89 VTGDELHSFE---------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP  135 (334)
T ss_pred             hhhhhhhhhh---------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence            9887654332                                 88899999999999999999999999999998654 5


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      ...+.+|.+.|..+.|.... .+++.+.|++||+||.+++..       ........+|+++.++++|++|.++ ..+.|
T Consensus       136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-------v~sL~~~s~VtSlEvs~dG~ilTia-~gssV  207 (334)
T KOG0278|consen  136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-------VQSLEFNSPVTSLEVSQDGRILTIA-YGSSV  207 (334)
T ss_pred             chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-------EEEEecCCCCcceeeccCCCEEEEe-cCcee
Confidence            67788999999999887666 888889999999999997764       2233456789999999999988765 55789


Q ss_pred             EEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          334 NFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      .+||..+-..+.....+......++.|+...+++|++|..++.||..+++.+-. ..++|.++|.|+.|+|++.      
T Consensus       208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE------  280 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGE------  280 (334)
T ss_pred             EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-cccCCCCceEEEEECCCCc------
Confidence            999998877666665566677788999999999999999999999999985422 2489999999999999999      


Q ss_pred             eEEEEEecCCCcEEEEEccCCCCC
Q 047728          414 RWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                        +.++||.||+|+||.+..++..
T Consensus       281 --~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  281 --LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             --eeeccCCCceEEEEEecCCCch
Confidence              8999999999999999877554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-31  Score=257.88  Aligned_cols=262  Identities=28%  Similarity=0.467  Sum_probs=218.6

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      +...|.++.|+  ++.+++++.|+.+++|+........                              ...+.+|...|.
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~------------------------------~~~l~~h~~~v~  207 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNL------------------------------LRELSGHTRGVS  207 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchh------------------------------hcccccccccee
Confidence            47789999998  7799999999999999996554200                              012245999999


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEc-CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRT-SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      +++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|++ ++++|+.|++|+|||++...      +.
T Consensus       208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~------~~  281 (456)
T KOG0266|consen  208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE------CV  281 (456)
T ss_pred             eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe------EE
Confidence            9999999999999999999999999 5568999999999999999999999 99999999999999998743      57


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-ceeeeecc----eeeEEEEecCCEEEEEeCCCcEEEE
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-GGVLRGHK----LAILCLVTAGNLVFSGSADMSICIW  377 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~----~~v~~~~~~~~~l~sgs~dg~i~iw  377 (474)
                      ..+..|...|++++|++++++|++++.|+.|++||+.++... ...+.++.    ....++++++.+++++..|+.+++|
T Consensus       282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w  361 (456)
T KOG0266|consen  282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW  361 (456)
T ss_pred             EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence            889999999999999999999999999999999999988732 12222222    3456777899999999999999999


Q ss_pred             ECCCCceEEEEeecCCccce---EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC-CCC
Q 047728          378 RRKENEHICLSMLTGHSGPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH-GVA  453 (474)
Q Consensus       378 d~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~  453 (474)
                      |+....  +...+.+|...+   .+...++.+.        ++++|+.|+.|++|++.++       .....+.+| ...
T Consensus       362 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~sg~~d~~v~~~~~~s~-------~~~~~l~~h~~~~  424 (456)
T KOG0266|consen  362 DLRSGK--SVGTYTGHSNLVRCIFSPTLSTGGK--------LIYSGSEDGSVYVWDSSSG-------GILQRLEGHSKAA  424 (456)
T ss_pred             EccCCc--ceeeecccCCcceeEecccccCCCC--------eEEEEeCCceEEEEeCCcc-------chhhhhcCCCCCc
Confidence            999887  566777787753   3444566777        9999999999999999986       456677888 677


Q ss_pred             CCccccCC
Q 047728          454 PNSLPYAP  461 (474)
Q Consensus       454 v~~l~~~p  461 (474)
                      +..+.|+|
T Consensus       425 ~~~~~~~~  432 (456)
T KOG0266|consen  425 VSDLSSHP  432 (456)
T ss_pred             eeccccCC
Confidence            77776665

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.4e-33  Score=246.98  Aligned_cols=272  Identities=19%  Similarity=0.282  Sum_probs=234.0

Q ss_pred             CCccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCC-CCcceeeeecccCccceeeeeecCCCCeEEEeeec
Q 047728          137 NQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSS-KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHR  212 (474)
Q Consensus       137 ~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (474)
                      ..+.+..+.+|...|+++.|.   +.+|++++.|+.|+||++-. +.++                               
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-------------------------------  251 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-------------------------------  251 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-------------------------------
Confidence            345677889999999999997   56899999999999999976 3332                               


Q ss_pred             cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEc
Q 047728          213 NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRR  290 (474)
Q Consensus       213 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~  290 (474)
                       .+|.+|..+|.+++|+++|..+++++.|+.|++||+++|+++..+.. ...++|+.|+|++  .+++|+.|+.|+.||+
T Consensus       252 -rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi  329 (503)
T KOG0282|consen  252 -RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI  329 (503)
T ss_pred             -hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence             35678999999999999999999999999999999999999998865 6678999999998  8999999999999999


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--eecceeeEEEEecCCEEEEE
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL--RGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg  368 (474)
                      +.+.      +.+....|-+.|..+.|-++++.+++.+.|+.++||+.+.+..+....  ..|..+.+.+.|+++++++-
T Consensus       330 Rs~k------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ  403 (503)
T KOG0282|consen  330 RSGK------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ  403 (503)
T ss_pred             cchH------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence            9776      467788889999999999999999999999999999988775554433  45778889999999999999


Q ss_pred             eCCCcEEEEECCCCc-eEEEEeecCCc--cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccc
Q 047728          369 SADMSICIWRRKENE-HICLSMLTGHS--GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH  445 (474)
Q Consensus       369 s~dg~i~iwd~~~~~-~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~  445 (474)
                      +.|+.|.+|.+...- ......+.+|.  +--..+.|+||+.        +|++|+.||.+.+||..+.       +...
T Consensus       404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~--------~l~SGdsdG~v~~wdwkt~-------kl~~  468 (503)
T KOG0282|consen  404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR--------TLCSGDSDGKVNFWDWKTT-------KLVS  468 (503)
T ss_pred             ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC--------eEEeecCCccEEEeechhh-------hhhh
Confidence            999999999875331 11234567775  3456789999999        9999999999999999987       6777


Q ss_pred             cccCCCCCCCccccCCC
Q 047728          446 PLEGHGVAPNSLPYAPS  462 (474)
Q Consensus       446 ~~~~~~~~v~~l~~~p~  462 (474)
                      .+..|...+..+.|+|-
T Consensus       469 ~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  469 KLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             ccccCCcceEEEEecCC
Confidence            88999999999999993

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-31  Score=252.41  Aligned_cols=281  Identities=21%  Similarity=0.351  Sum_probs=237.2

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~  183 (474)
                      ...|..++|.  ..+++++-..|.|++||  ....+..|..|.++|..++|+  ...+++|+.|-+|+||+..+.++.. 
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf-   87 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF-   87 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh-
Confidence            4456666666  56899999999999999  557888999999999999999  5689999999999999999887753 


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD  263 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  263 (474)
                                                     .+.+|-+-|..+.|++.-..|+++|+|.+|+||+..+.+++..+.+|..
T Consensus        88 -------------------------------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH  136 (1202)
T KOG0292|consen   88 -------------------------------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH  136 (1202)
T ss_pred             -------------------------------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence                                           4567999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc-----------------------eeeeeeeeeecccccEEEEEEcC
Q 047728          264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG-----------------------TKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      .|.|..|+|.. .+++++-|.+||+||+....+.                       ........+.+|...|+-++|+|
T Consensus       137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence            99999999966 9999999999999997532110                       01234566789999999999999


Q ss_pred             CCCEEEEEcCCCcEEEeecCcc-cccceeeeecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728          320 DAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP  396 (474)
Q Consensus       320 ~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~  396 (474)
                      .-.+|++|+.|..|++|..... .......++|...|.++-++  .+++++.++|++|+|||+...+  .+.++....+.
T Consensus       217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt--~v~tfrrendR  294 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT--SVQTFRRENDR  294 (1202)
T ss_pred             CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc--ceeeeeccCCe
Confidence            9999999999999999997643 23345678999888776655  5899999999999999998776  56777767788


Q ss_pred             eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      .+.++.+|..+         |+.++.|+-+.||.++.
T Consensus       295 FW~laahP~lN---------LfAAgHDsGm~VFkleR  322 (1202)
T KOG0292|consen  295 FWILAAHPELN---------LFAAGHDSGMIVFKLER  322 (1202)
T ss_pred             EEEEEecCCcc---------eeeeecCCceEEEEEcc
Confidence            99999999987         44555666677887764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.6e-30  Score=236.78  Aligned_cols=273  Identities=27%  Similarity=0.464  Sum_probs=222.5

Q ss_pred             ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      +..+++|...|.++.|+  +++|++++.||.|++|++.+++...                                .+..
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------------------------------~~~~   49 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------------------------TLKG   49 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------------------------------EEec
Confidence            35677899999999998  4799999999999999998765321                                2234


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      |...+..+.|.+++++|++++.|+.|++||+.+++.+..+..|...+.++.|.+++ .+++++.++.|++||++...   
T Consensus        50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  126 (289)
T cd00200          50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK---  126 (289)
T ss_pred             CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE---
Confidence            88889999999999999999999999999999988888898999999999999987 66777779999999997432   


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSIC  375 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~  375 (474)
                         ....+..|...+.+++|+|++.++++++.++.|++||++..... ..+..|...+.  ++.++++.+++++.|+.|+
T Consensus       127 ---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  202 (289)
T cd00200         127 ---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK  202 (289)
T ss_pred             ---EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence               23444578889999999999999998888999999999866554 34446665554  4556777999999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN  455 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~  455 (474)
                      +||+..++  .+..+..|...+.+++|++++.        ++++++.||.|++|++.++       .....+..|...+.
T Consensus       203 i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~i~  265 (289)
T cd00200         203 LWDLSTGK--CLGTLRGHENGVNSVAFSPDGY--------LLASGSEDGTIRVWDLRTG-------ECVQTLSGHTNSVT  265 (289)
T ss_pred             EEECCCCc--eecchhhcCCceEEEEEcCCCc--------EEEEEcCCCcEEEEEcCCc-------eeEEEccccCCcEE
Confidence            99998876  4556668889999999999977        8888888999999999875       34445557888888


Q ss_pred             ccccCCCCCcCCceeecc
Q 047728          456 SLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       456 ~l~~~p~~s~Dg~~l~~~  473 (474)
                      ++.    |++|+++++++
T Consensus       266 ~~~----~~~~~~~l~~~  279 (289)
T cd00200         266 SLA----WSPDGKRLASG  279 (289)
T ss_pred             EEE----ECCCCCEEEEe
Confidence            884    55566666654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.2e-30  Score=269.90  Aligned_cols=301  Identities=16%  Similarity=0.195  Sum_probs=225.9

Q ss_pred             CCcEEEEeCCcc-------ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728          129 SKNIRVWKNQRE-------FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS  199 (474)
Q Consensus       129 dg~v~vwd~~~~-------~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  199 (474)
                      +|.+++|+....       ...+..|...|.+++|+  +++|++|+.|+.|+||++........ ... .          
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~-~----------  524 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH-Y----------  524 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc-c----------
Confidence            667778864421       12345689999999998  67999999999999999864211000 000 0          


Q ss_pred             cCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eE
Q 047728          200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LV  276 (474)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l  276 (474)
                                  . .....+...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++ +|
T Consensus       525 ------------~-~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        525 ------------P-VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL  591 (793)
T ss_pred             ------------c-eEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence                        0 00012446799999987 578999999999999999999999999999999999999997 55 89


Q ss_pred             EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc-CCCCEEEEEcCCCcEEEeecCcccccceeeeecceee
Q 047728          277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS-PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI  355 (474)
Q Consensus       277 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v  355 (474)
                      ++|+.|+.|++||++....      ...+. +...+.++.|. +++.+|++|+.|+.|++||++........+.+|...+
T Consensus       592 ~Sgs~Dg~v~iWd~~~~~~------~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V  664 (793)
T PLN00181        592 ASGSDDGSVKLWSINQGVS------IGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV  664 (793)
T ss_pred             EEEcCCCEEEEEECCCCcE------EEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence            9999999999999975432      22222 34578999995 4799999999999999999987654445667888888


Q ss_pred             EEEEe-cCCEEEEEeCCCcEEEEECCCCc----eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          356 LCLVT-AGNLVFSGSADMSICIWRRKENE----HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       356 ~~~~~-~~~~l~sgs~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      .++.+ ++.+|++++.|++|+|||+....    ..++..+.+|...+.+++|++++.        +|++|+.|+.|++|+
T Consensus       665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~--------~lasgs~D~~v~iw~  736 (793)
T PLN00181        665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG--------YIATGSETNEVFVYH  736 (793)
T ss_pred             EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC--------EEEEEeCCCEEEEEE
Confidence            77765 68899999999999999997431    124678899999999999999998        999999999999999


Q ss_pred             ccCCCCCCCCC------cccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          431 VSEQAPPLVST------TQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       431 ~~~~~~~~~~~------~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .....+.....      ........+...|.++    +|++||.+++++
T Consensus       737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v----~ws~~~~~lva~  781 (793)
T PLN00181        737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV----CWRGQSSTLVAA  781 (793)
T ss_pred             CCCCCceEEEecccCCcccccccCCCCcEEEEE----EEcCCCCeEEEe
Confidence            87653321110      0001123345567777    456677777665

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-31  Score=218.10  Aligned_cols=258  Identities=18%  Similarity=0.300  Sum_probs=216.3

Q ss_pred             CCcEEEEeCC--ccccccc--cCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecC
Q 047728          129 SKNIRVWKNQ--REFSGFK--SNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK  201 (474)
Q Consensus       129 dg~v~vwd~~--~~~~~~~--~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (474)
                      .|.+.|-+..  +.+..+.  .-.+.+..++|+   .+.+++++.||++++||......                     
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---------------------   95 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---------------------   95 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------------
Confidence            6778888753  3333322  235678899998   56899999999999999544322                     


Q ss_pred             CCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEE
Q 047728          202 PSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFT  278 (474)
Q Consensus       202 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~  278 (474)
                                +...|++|..+|.++.|++ ....++++++|++|++|+....+.+.++.+|...|...+|+|.-  .+++
T Consensus        96 ----------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas  165 (311)
T KOG0277|consen   96 ----------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS  165 (311)
T ss_pred             ----------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence                      1235667999999999999 66778889999999999999999999999999999999999986  9999


Q ss_pred             eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE
Q 047728          279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC  357 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~  357 (474)
                      ++.|+++++||++..++      ...+..|...|.++.|+. +.++|++|+.|+.|++||+++.+.+...+.+|...|..
T Consensus       166 ~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk  239 (311)
T KOG0277|consen  166 ASGDGTLRLWDVRSPGK------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK  239 (311)
T ss_pred             ccCCceEEEEEecCCCc------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence            99999999999997765      334777888999999998 78899999999999999999988888888999988866


Q ss_pred             EEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          358 LVT---AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       358 ~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      +.+   ...+|++++.|-+++|||...... ++.+...|+.-|..+.|++-...       ++|+++.|+.++||+-
T Consensus       240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e~~~~HtEFv~g~Dws~~~~~-------~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  240 VKFSPHHASLLASASYDMTVRIWDPERQDS-AIETVDHHTEFVCGLDWSLFDPG-------QVASTGWDELLYVWNP  308 (311)
T ss_pred             EecCcchhhHhhhccccceEEecccccchh-hhhhhhccceEEeccccccccCc-------eeeecccccceeeecc
Confidence            654   367999999999999999986543 36677789999999999987554       8999999999999984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.3e-31  Score=230.24  Aligned_cols=269  Identities=24%  Similarity=0.369  Sum_probs=224.5

Q ss_pred             cCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          146 SNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       146 ~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      .|.+.|.++...++.|++|+.||.+++||......                                 ..+.+|.++|.+
T Consensus       103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~---------------------------------~~~~Ght~~ik~  149 (423)
T KOG0313|consen  103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI---------------------------------KTIVGHTGPIKS  149 (423)
T ss_pred             cchhhhhhhcccCceEEEeecCCeeEEEecCCceE---------------------------------EEEecCCcceee
Confidence            48889999998899999999999999999876533                                 234569999998


Q ss_pred             EEecCCC---CEEEEEECCCcEEEEEcCCcce----eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC----
Q 047728          226 LSMSEDQ---NLLYSASWDKTFKVWRTSDYKC----LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ----  293 (474)
Q Consensus       226 l~~~~~~---~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~----  293 (474)
                      ++|.-..   ..|++++.|.++++|-.+.++.    +..-.+|...|.++...+++ ++++|+.|.+|.||+....    
T Consensus       150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~  229 (423)
T KOG0313|consen  150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE  229 (423)
T ss_pred             eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccc
Confidence            8885533   4699999999999999876653    33345899999999999999 9999999999999983211    


Q ss_pred             ---------------CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728          294 ---------------GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL  358 (474)
Q Consensus       294 ---------------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~  358 (474)
                                     +......+...+.+|..+|.++.|++ ...+++++.|.+|+.||+.++........+........
T Consensus       230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~  308 (423)
T KOG0313|consen  230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISY  308 (423)
T ss_pred             ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeec
Confidence                           11123345677889999999999998 77899999999999999999988777776666667777


Q ss_pred             EecCCEEEEEeCCCcEEEEECCCCc-eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          359 VTAGNLVFSGSADMSICIWRRKENE-HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       359 ~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      .+..++|++|+.|..|++||.+++. ......+.+|.+.|.++.|+|....       +|++|+.|+++++||++...  
T Consensus       309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-------~~~S~S~D~t~klWDvRS~k--  379 (423)
T KOG0313|consen  309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-------QLVSGSYDNTVKLWDVRSTK--  379 (423)
T ss_pred             ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-------EEEEEecCCeEEEEEeccCC--
Confidence            7889999999999999999998764 2345788999999999999999875       89999999999999999874  


Q ss_pred             CCCCcccccccCCCCCCCccccCC
Q 047728          438 LVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       438 ~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                          .++..+.+|...|-++.|+-
T Consensus       380 ----~plydI~~h~DKvl~vdW~~  399 (423)
T KOG0313|consen  380 ----APLYDIAGHNDKVLSVDWNE  399 (423)
T ss_pred             ----CcceeeccCCceEEEEeccC
Confidence                36678899999999997763

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-31  Score=241.94  Aligned_cols=275  Identities=21%  Similarity=0.305  Sum_probs=232.2

Q ss_pred             eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728          104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~  177 (474)
                      +.+..|...|.++.+.  ...++++-..|.|.||+  ++..+..+.-..-+|.+..|-  .+.+++|+.|..||||+.++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            4455688889998876  66899999999999998  446677888888899999887  67999999999999999999


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-cceee
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-YKCLE  256 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~  256 (474)
                      .+.+.                                .|..|.+-|+|++.+|...+++++++|-+|++||.+. ..+.+
T Consensus        87 ~ekV~--------------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q  134 (794)
T KOG0276|consen   87 GEKVK--------------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ  134 (794)
T ss_pred             ceeeE--------------------------------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence            87653                                4456999999999999999999999999999999975 46788


Q ss_pred             eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcCCCc
Q 047728          257 SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSSDGL  332 (474)
Q Consensus       257 ~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~  332 (474)
                      ++.+|...|.+++|.|..  .+++++-|++|++|.+....      +..++.+|...|+|+.+-+  |..+|++|+.|.+
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC------CceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence            999999999999999987  99999999999999987654      3567889999999999988  4579999999999


Q ss_pred             EEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728          333 VNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  410 (474)
                      |+|||.++..++ +.+.+|...|  .++.|.=.++++|++||+++||+..+-+  ....+.-.-+.|+|++-.+.+.   
T Consensus       209 iKvWDyQtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~--lE~tLn~gleRvW~I~~~k~~~---  282 (794)
T KOG0276|consen  209 IKVWDYQTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK--LEKTLNYGLERVWCIAAHKGDG---  282 (794)
T ss_pred             EEEeecchHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee--hhhhhhcCCceEEEEeecCCCC---
Confidence            999999988776 5677787666  5555667799999999999999987766  3345555567899999888777   


Q ss_pred             ccceEEEEEecCCCcEE
Q 047728          411 REKRWILYSGSLDKSVK  427 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~  427 (474)
                           .++.|.+.|.|.
T Consensus       283 -----~i~vG~Deg~i~  294 (794)
T KOG0276|consen  283 -----KIAVGFDEGSVT  294 (794)
T ss_pred             -----eEEEeccCCcEE
Confidence                 677777666553

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.4e-31  Score=252.42  Aligned_cols=267  Identities=21%  Similarity=0.346  Sum_probs=225.8

Q ss_pred             cccccCccCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ..|...+..|..++|++  ..++++-..|.|++||..-+.++.                                .|.+|
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------------------------------rFdeH   50 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------------------------------RFDEH   50 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------------------------------hhhcc
Confidence            34566778899999994  489999999999999998876542                                34569


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      .++|..++|+|.+.++++|++|-.|++|+..+.+|+.++.+|-+.|..+.|++.- .+++++.|.+|+||+.....    
T Consensus        51 dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~----  126 (1202)
T KOG0292|consen   51 DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK----  126 (1202)
T ss_pred             CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc----
Confidence            9999999999999999999999999999999999999999999999999999987 99999999999999998655    


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc----------------------------ccceeeee
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL----------------------------SHGGVLRG  350 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~----------------------------~~~~~~~~  350 (474)
                        +...+.+|...|.|..|+|....+++++-|.+|++||+..-+                            .+..++.+
T Consensus       127 --~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  127 --CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             --eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence              578899999999999999999999999999999999964211                            12334567


Q ss_pred             cceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728          351 HKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       351 ~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                      |...|.-  |.|.-.++++|+.|..|++|.....+.-.+.+..+|.+.|.++-|+|...        ++++.|+|++|+|
T Consensus       205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~--------lIlSnsEDksirV  276 (1202)
T KOG0292|consen  205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD--------LILSNSEDKSIRV  276 (1202)
T ss_pred             cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc--------eeEecCCCccEEE
Confidence            7777744  44455899999999999999997665445778899999999999999888        9999999999999


Q ss_pred             EEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          429 WRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      ||+...       +..+.+.....+...++-+|
T Consensus       277 wDm~kR-------t~v~tfrrendRFW~laahP  302 (1202)
T KOG0292|consen  277 WDMTKR-------TSVQTFRRENDRFWILAAHP  302 (1202)
T ss_pred             Eecccc-------cceeeeeccCCeEEEEEecC
Confidence            999887       34445544555556665555

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6.9e-30  Score=217.02  Aligned_cols=263  Identities=19%  Similarity=0.318  Sum_probs=210.8

Q ss_pred             EEEeeCCCcEEEEeCC--------------ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728          123 LYTGSDSKNIRVWKNQ--------------REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGT  188 (474)
Q Consensus       123 l~tgs~dg~v~vwd~~--------------~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  188 (474)
                      |++|+....|.-+++.              .++..+..|.++|++++.++.++++|+.|-+|+|||+......       
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~ql-------   76 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQL-------   76 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhh-------
Confidence            5666666655555421              1255678999999999999999999999999999999887543       


Q ss_pred             cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC--EEEEEECCCcEEEEEcCCcceeeeeeecCccee
Q 047728          189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN  266 (474)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  266 (474)
                                               +.+..|.+.|+++.|.+.-.  .|++|+.||.|.+|+....+++.++++|.+.|+
T Consensus        77 -------------------------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   77 -------------------------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             -------------------------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence                                     33455999999999998654  899999999999999999999999999999999


Q ss_pred             EEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728          267 SIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG  345 (474)
Q Consensus       267 ~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  345 (474)
                      .++++|.+ +.++.+.|+.+++||+-.+.....       ..-....+.+.|+|.|.+++.+..+ .|-+|.+++.....
T Consensus       132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~  203 (362)
T KOG0294|consen  132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFR  203 (362)
T ss_pred             eeEecCCCceEEEEcCCceeeeehhhcCcccee-------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhh
Confidence            99999999 777889999999999976654211       1122234459999999999888776 48889887765443


Q ss_pred             eeeeecceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728          346 GVLRGHKLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK  424 (474)
Q Consensus       346 ~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg  424 (474)
                      .+...  ..+.|+.+ ++..|++|..|+.|.+||.....  +...+.+|...|.++.+..+...      .+|+|+|.||
T Consensus       204 ~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~--~~~~~~AH~~RVK~i~~~~~~~~------~~lvTaSSDG  273 (362)
T KOG0294|consen  204 EIENP--KRILCATFLDGSELLVGGDNEWISLKDTDSDT--PLTEFLAHENRVKDIASYTNPEH------EYLVTASSDG  273 (362)
T ss_pred             hhhcc--ccceeeeecCCceEEEecCCceEEEeccCCCc--cceeeecchhheeeeEEEecCCc------eEEEEeccCc
Confidence            33322  45677766 68899999999999999998865  57789999999999996544321      1999999999


Q ss_pred             cEEEEEccCCC
Q 047728          425 SVKMWRVSEQA  435 (474)
Q Consensus       425 ~i~vw~~~~~~  435 (474)
                      .|+|||++...
T Consensus       274 ~I~vWd~~~~~  284 (362)
T KOG0294|consen  274 FIKVWDIDMET  284 (362)
T ss_pred             eEEEEEccccc
Confidence            99999998763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=6.7e-32  Score=229.92  Aligned_cols=286  Identities=24%  Similarity=0.350  Sum_probs=233.2

Q ss_pred             cceeeeee-eeecCcEEE--EEEcCCEEEEeeCCCcEEEEeC--Cc--------cccccccCccCEEEEEec--CCEEEE
Q 047728           99 PNVLIGSL-VREEGHIYS--LAAAGDLLYTGSDSKNIRVWKN--QR--------EFSGFKSNSGLVKAIVIS--NEKIFS  163 (474)
Q Consensus        99 ~~~~~~~l-~~h~~~i~~--~~~~~~~l~tgs~dg~v~vwd~--~~--------~~~~~~~h~~~V~~i~~~--~~~l~s  163 (474)
                      |.++.+++ ++.+.++-|  |+|+|+||++|+.||.|.||+.  ++        ....|..+.++|.|+.|+  .++|++
T Consensus       201 Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs  280 (508)
T KOG0275|consen  201 PTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS  280 (508)
T ss_pred             hHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc
Confidence            44444443 355666666  5667999999999999999982  22        123456789999999999  569999


Q ss_pred             EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc
Q 047728          164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT  243 (474)
Q Consensus       164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~  243 (474)
                      |+.||.|++|.+.++++...+..                               .|+..|+|+.|+.|+..+++++.|.+
T Consensus       281 GsqDGkIKvWri~tG~ClRrFdr-------------------------------AHtkGvt~l~FSrD~SqiLS~sfD~t  329 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQCLRRFDR-------------------------------AHTKGVTCLSFSRDNSQILSASFDQT  329 (508)
T ss_pred             cCcCCcEEEEEEecchHHHHhhh-------------------------------hhccCeeEEEEccCcchhhcccccce
Confidence            99999999999999998754432                               39999999999999999999999999


Q ss_pred             EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CC
Q 047728          244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DA  321 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~  321 (474)
                      +++.-+++|+++..+++|...|+...|.++| .+++++.||+|++|+..+......    ....+...+|..+-.-| +.
T Consensus       330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T----fk~~~~d~~vnsv~~~PKnp  405 (508)
T KOG0275|consen  330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLST----FKPLGTDYPVNSVILLPKNP  405 (508)
T ss_pred             EEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhh----ccCCCCcccceeEEEcCCCC
Confidence            9999999999999999999999999999999 999999999999999876543211    11223566788888888 55


Q ss_pred             CEEEEEcCCCcEEEeecCcccccceeeee----cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728          322 AIVYCGSSDGLVNFWERELNLSHGGVLRG----HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV  397 (474)
Q Consensus       322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v  397 (474)
                      ..++++...++|++.++.... +..+..+    ..--..+++|.|.++++.++|+.++.|.+.++.  ...++..|...|
T Consensus       406 eh~iVCNrsntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~--LE~tl~VhEkdv  482 (508)
T KOG0275|consen  406 EHFIVCNRSNTVYIMNMQGQV-VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK--LERTLPVHEKDV  482 (508)
T ss_pred             ceEEEEcCCCeEEEEeccceE-EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc--eeeeeecccccc
Confidence            688889999999999887542 2122211    222346788999999999999999999999988  456788899999


Q ss_pred             EEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      ..++-+|..+        +|++-++||.+++|.
T Consensus       483 IGl~HHPHqN--------llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  483 IGLTHHPHQN--------LLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccCcccc--------hhhhhcccchhhhcC
Confidence            9999999988        899999999999995

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.2e-30  Score=221.69  Aligned_cols=321  Identities=18%  Similarity=0.264  Sum_probs=249.7

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV  172 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v  172 (474)
                      ...+++.+.+|++.||.++.+  ...+.+++.|.+.+||.  .++++..+.+|.+.|++|.|+  +.++++++.|++..|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            346788899999999999987  55899999999999997  557899999999999999998  678999999999999


Q ss_pred             EecC------CCCcceeee-eccc----CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC
Q 047728          173 WKVS------SKDASIHKR-VGTL----PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD  241 (474)
Q Consensus       173 wd~~------~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d  241 (474)
                      |...      ......... ..+.    ....+.-........   ..+-+...+.+|...|.+..|-..++.++++++|
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~---tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH---TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc---eeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            9832      211110000 0000    000000000000111   1222335577899999999999999999999999


Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD  320 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  320 (474)
                      .+-.+||+++++.+..+.+|....+.++-+|.. ++++.+.|.+.++||++..-.     ....+.+|...|+++.|..+
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-----sV~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-----SVAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc-----eeeeecccccceeEEEEecC
Confidence            999999999999999999999999999999988 888999999999999984332     46778999999999999976


Q ss_pred             CCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEE--EeecCCccce
Q 047728          321 AAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICL--SMLTGHSGPV  397 (474)
Q Consensus       321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~--~~~~~h~~~v  397 (474)
                      . .+++|+.|.+|++||+++.......++. ....-++++..+..++.--.+..|++||+...+...+  ..-.+|...|
T Consensus       369 d-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV  447 (481)
T KOG0300|consen  369 D-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV  447 (481)
T ss_pred             C-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence            5 5678999999999999988766555543 3344566777778888888899999999987753222  2446899999


Q ss_pred             EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +|++|..+....      -|++++-|..+.-|++...
T Consensus       448 ~c~AW~eehp~c------nLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  448 TCCAWLEEHPAC------NLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eeeeccccCccc------ccccccccceeeeeEeccc
Confidence            999999876522      5899999999999999765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=6.4e-30  Score=225.80  Aligned_cols=274  Identities=21%  Similarity=0.303  Sum_probs=236.3

Q ss_pred             cEEEEEEcC--CEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          112 HIYSLAAAG--DLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       112 ~i~~~~~~~--~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      .|.++...+  ..++||+.|.++.++|  .++.+..+++|...|+.+.++  .+.+++++.|-.|+||.........   
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~---  297 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT---  297 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc---
Confidence            477777664  7999999999999998  457789999999999999999  4578999999999999988765332   


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec--Cc
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH--DD  263 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~  263 (474)
                                                   ....|..+|+.+..+|.|.||++++.|++..+.|++++.++......  .-
T Consensus       298 -----------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v  348 (506)
T KOG0289|consen  298 -----------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDV  348 (506)
T ss_pred             -----------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccc
Confidence                                         22349999999999999999999999999999999999988776542  34


Q ss_pred             ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      .+++.+|+||| .|.+|..||.|+|||+..+..      ...+.+|.++|..++|+.+|-+|++++.|+.|++||++..+
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccc------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            58999999999 889999999999999987653      67788899999999999999999999999999999999887


Q ss_pred             ccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe
Q 047728          343 SHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG  420 (474)
Q Consensus       343 ~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~  420 (474)
                      ....+.......+  ++|...|.+|+.++.|=.|++++-.+.++.++..+..|.+..+++.|.....        +++++
T Consensus       423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq--------~l~s~  494 (506)
T KOG0289|consen  423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ--------YLAST  494 (506)
T ss_pred             ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce--------EEeec
Confidence            6655555444344  5555569999999999888888888888888889999999999999999988        99999


Q ss_pred             cCCCcEEEEEc
Q 047728          421 SLDKSVKMWRV  431 (474)
Q Consensus       421 s~Dg~i~vw~~  431 (474)
                      |.|..++++.+
T Consensus       495 smd~~l~~~a~  505 (506)
T KOG0289|consen  495 SMDAILRLYAL  505 (506)
T ss_pred             cchhheEEeec
Confidence            99999998865

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-30  Score=226.97  Aligned_cols=280  Identities=20%  Similarity=0.278  Sum_probs=227.7

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      +..+.+..|.+.|..+.|+  |.+||+++.|.+..+|++........                             ..++
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-----------------------------~~tl  265 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-----------------------------KKTL  265 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-----------------------------eeee
Confidence            4567788999999999998  78999999999999999876543111                             1345


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~  294 (474)
                      .+|..+|..+.|+||.++|++|+.|..+.+||+.+|.+...+.. +...+.+++|.||+ .+++|+.|+.+..||+....
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~  345 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI  345 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence            67999999999999999999999999999999999998877743 46889999999999 99999999999999987432


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcE
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSI  374 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i  374 (474)
                      .      ..........|.++++.+||+++++.+.|..|++|+.++......+...+.....+++-+++++++--.+..|
T Consensus       346 ~------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  346 L------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             h------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence            2      1111112356999999999999999999999999999877655444455666678888899999999999999


Q ss_pred             EEEECCCCceEEEEeecCCccc--eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728          375 CIWRRKENEHICLSMLTGHSGP--VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV  452 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  452 (474)
                      ++||++...  .+..+.||...  |..-+|---+..       ++++||+|+.|+||+..++       .+...+.||..
T Consensus       420 ~LWDl~e~~--lv~kY~Ghkq~~fiIrSCFgg~~~~-------fiaSGSED~kvyIWhr~sg-------kll~~LsGHs~  483 (519)
T KOG0293|consen  420 HLWDLEENK--LVRKYFGHKQGHFIIRSCFGGGNDK-------FIASGSEDSKVYIWHRISG-------KLLAVLSGHSK  483 (519)
T ss_pred             EEeecchhh--HHHHhhcccccceEEEeccCCCCcc-------eEEecCCCceEEEEEccCC-------ceeEeecCCcc
Confidence            999999554  46677788654  334445433322       8999999999999999988       67778999999


Q ss_pred             CCCccccCCC-------CCcCCce
Q 047728          453 APNSLPYAPS-------FSSQGRI  469 (474)
Q Consensus       453 ~v~~l~~~p~-------~s~Dg~~  469 (474)
                      .|++++|+|+       -|.||++
T Consensus       484 ~vNcVswNP~~p~m~ASasDDgtI  507 (519)
T KOG0293|consen  484 TVNCVSWNPADPEMFASASDDGTI  507 (519)
T ss_pred             eeeEEecCCCCHHHhhccCCCCeE
Confidence            9999999994       3666665

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.2e-30  Score=246.14  Aligned_cols=251  Identities=20%  Similarity=0.319  Sum_probs=197.8

Q ss_pred             CCcceeeeeee-eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----------------------------------
Q 047728           97 FSPNVLIGSLV-REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----------------------------------  139 (474)
Q Consensus        97 ~~~~~~~~~l~-~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----------------------------------  139 (474)
                      +......+.+. .|++.|+++.|+  |+|||+|++||.|+||.+..                                  
T Consensus       253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~  332 (712)
T KOG0283|consen  253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI  332 (712)
T ss_pred             ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence            33444555677 899999998887  99999999999999995211                                  


Q ss_pred             ----------------------------cccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccC
Q 047728          140 ----------------------------EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLP  190 (474)
Q Consensus       140 ----------------------------~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  190 (474)
                                                  +++.|++|.+.|..+.|+ +++|++++.|.+||+|++...+++..+.     
T Consensus       333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-----  407 (712)
T KOG0283|consen  333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-----  407 (712)
T ss_pred             cccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-----
Confidence                                        244578999999999999 8899999999999999999988875543     


Q ss_pred             ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728          191 TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  269 (474)
                                                  |.+-|+|++|+| |.++|++|+-|+.|+||++...+.+.-... ..-|++++
T Consensus       408 ----------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvc  458 (712)
T KOG0283|consen  408 ----------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVC  458 (712)
T ss_pred             ----------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEE
Confidence                                        999999999999 889999999999999999988776654443 58899999


Q ss_pred             ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee--eeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccc
Q 047728          270 AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS--QTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHG  345 (474)
Q Consensus       270 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~  345 (474)
                      +.|+| ..++|+.+|.+++|+.+..+......+.  .........|+.+.|.| +...+++.+.|..|+|||.+....+.
T Consensus       459 y~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~  538 (712)
T KOG0283|consen  459 YSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH  538 (712)
T ss_pred             eccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence            99999 8999999999999998754332211111  11111223799999998 44568888999999999997665443


Q ss_pred             eee---eecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          346 GVL---RGHKLAILCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       346 ~~~---~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      .+.   ..+...-..|+.+|++|+++++|..|+||+...
T Consensus       539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  539 KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            322   222233466778999999999999999999743

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5e-31  Score=227.79  Aligned_cols=284  Identities=17%  Similarity=0.272  Sum_probs=232.9

Q ss_pred             ceeeeeeeeecCcEEEEEEcCC---EEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEe
Q 047728          100 NVLIGSLVREEGHIYSLAAAGD---LLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~~~---~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd  174 (474)
                      ..+++.|.+|.+.|.|++-+.+   .+++|+.||.|+|||+.  .++..++.|.+.|..|++..+.+++++.|.+|+.|.
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWK  135 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeee
Confidence            4567889999999999998843   68999999999999955  578899999999999999999999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      ++.... . .                                ......+..|.-+..+..++|++.  .|.|||.+...+
T Consensus       136 ~~~~p~-~-t--------------------------------ilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P  179 (433)
T KOG0268|consen  136 IDGPPL-H-T--------------------------------ILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP  179 (433)
T ss_pred             ccCCcc-e-e--------------------------------eeccccccccccccccccccccCc--eeeecccccCCc
Confidence            887311 0 0                                013345566666666778888875  599999999899


Q ss_pred             eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          255 LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      +..+.-..+.|.++.|+|-.  .|+++..|+.|.+||++......+...       ...-+.|+|+|++-.++++++|..
T Consensus       180 v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-------~mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  180 VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-------TMRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-------eccccceecCccccceeecccccc
Confidence            99998888899999999987  888889999999999997765333222       233567999998889999999999


Q ss_pred             EEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728          333 VNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  410 (474)
                      ++.||++..........+|...++.+  +|.|+-+++|+-|.+|+||..+.+...-+. ....-..|.|+.|+.|.+   
T Consensus       253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Dsk---  328 (433)
T KOG0268|consen  253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDSK---  328 (433)
T ss_pred             ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh-hHhhhheeeEEEEecccc---
Confidence            99999999888888899999999765  567999999999999999999876522111 111234699999999999   


Q ss_pred             ccceEEEEEecCCCcEEEEEccCCC
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                           ++++||+|+.|++|.-...+
T Consensus       329 -----yi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  329 -----YIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             -----EEEecCCCcceeeeecchhh
Confidence                 99999999999999876543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.6e-28  Score=209.44  Aligned_cols=281  Identities=21%  Similarity=0.332  Sum_probs=222.3

Q ss_pred             eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeC--CCeEEEEecCC
Q 047728          106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQ--DGKIRVWKVSS  177 (474)
Q Consensus       106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~--dg~i~vwd~~~  177 (474)
                      +..-.+.|.++.|+  |.+|+++++|.+++|||..  +.+..+..+.-.|..++|.  ...++.++.  |.+||..++.+
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence            33456789999987  8899999999999999944  5566676676677777775  556666665  88999999998


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES  257 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  257 (474)
                      .+.+.                                .|.||...|++|+.+|-+..+++++.|++|++||++..++...
T Consensus        90 NkylR--------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~  137 (311)
T KOG1446|consen   90 NKYLR--------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL  137 (311)
T ss_pred             CceEE--------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence            87653                                4567999999999999889999999999999999998888877


Q ss_pred             eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728          258 VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW  336 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~  336 (474)
                      +.....+  .+++.|+| .+|++.....|++||++.-.++....+... .......+.+.|+|+|++|+.++..+.+++.
T Consensus       138 l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  138 LNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-DNDEAEWTDLEFSPDGKSILLSTNASFIYLL  214 (311)
T ss_pred             EecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-CCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence            7654444  47899999 666666666999999998765544333222 2556779999999999999999999999999


Q ss_pred             ecCcccccceeeeecce-----eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCcccc
Q 047728          337 ERELNLSHGGVLRGHKL-----AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       337 d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~  410 (474)
                      |.-.+.... .+..+..     .-.++.|+++++++|+.||+|.+|+++++..  +..+.+ +.+++.++.|+|.-.   
T Consensus       215 DAf~G~~~~-tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~~~~~~~~~~fnP~~~---  288 (311)
T KOG1446|consen  215 DAFDGTVKS-TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK--VAVLRGPNGGPVSCVRFNPRYA---  288 (311)
T ss_pred             EccCCcEee-eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE--eeEecCCCCCCccccccCCcee---
Confidence            987776443 3333322     2377889999999999999999999999984  556666 789999999999866   


Q ss_pred             ccceEEEEEecCCCcEEEEEccCC
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                           +++++  +..+.+|=....
T Consensus       289 -----mf~sa--~s~l~fw~p~~~  305 (311)
T KOG1446|consen  289 -----MFVSA--SSNLVFWLPDED  305 (311)
T ss_pred             -----eeeec--CceEEEEecccc
Confidence                 66666  457888876644

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.1e-31  Score=231.37  Aligned_cols=283  Identities=22%  Similarity=0.338  Sum_probs=232.7

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeCCCeE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKI  170 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i  170 (474)
                      |......+..|++.|..+.|-  .+.|+||+.|..|++|+..    .....+.+..+.|+.+.|+  +.++++++.|+.+
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            444555678899999998886  4799999999999999843    2456777888999999998  7799999999999


Q ss_pred             EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728          171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~  250 (474)
                      ++|+++..+..                                .++.+|++.|+++.|......+++|+.|.+|++||+.
T Consensus       244 r~Wnvd~~r~~--------------------------------~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~  291 (459)
T KOG0288|consen  244 RLWNVDSLRLR--------------------------------HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ  291 (459)
T ss_pred             eeeeccchhhh--------------------------------hhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence            99999987654                                3567799999999999877779999999999999999


Q ss_pred             CcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728          251 DYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD  330 (474)
Q Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  330 (474)
                      ...|..++.. ...+.+|+.. ...+++|-.|++|++||.+....      .... ...+.|+++..++++..|++++.|
T Consensus       292 k~~C~kt~l~-~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~------~~sv-~~gg~vtSl~ls~~g~~lLsssRD  362 (459)
T KOG0288|consen  292 KAYCSKTVLP-GSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADK------TRSV-PLGGRVTSLDLSMDGLELLSSSRD  362 (459)
T ss_pred             hhheeccccc-cccccceEec-ceeeeecccccceEEEeccCCce------eeEe-ecCcceeeEeeccCCeEEeeecCC
Confidence            9888887754 5566777766 33889999999999999986653      2222 334489999999999999999999


Q ss_pred             CcEEEeecCcccccc-----eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          331 GLVNFWERELNLSHG-----GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       331 g~i~v~d~~~~~~~~-----~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      .++.+.|+++.....     .+..++...-.+|+|++.|+++|+.||.|+||++.+++...+.........|++++|+|.
T Consensus       363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence            999999999875432     233456677799999999999999999999999999984433333333336999999999


Q ss_pred             CccccccceEEEEEecCCCcEEEEE
Q 047728          406 DESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      |.        .|++++.++.+.+|.
T Consensus       443 G~--------~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  443 GS--------GLLSADKQKAVTLWT  459 (459)
T ss_pred             Cc--------hhhcccCCcceEecC
Confidence            99        899999999999994

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=9e-29  Score=204.95  Aligned_cols=277  Identities=19%  Similarity=0.264  Sum_probs=225.2

Q ss_pred             eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc----ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEe
Q 047728          104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE----FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd  174 (474)
                      +.+.+|.++|.+++++  |..|++|+.|+++++|+....    -....+|.+.|-.++|+   ++.+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            6678899999999987  999999999999999986533    23457899999999997   77999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +..+++.....                                 ....=.-+.|+|++.+++.++.|..|.+.|.++.+.
T Consensus        94 ~r~~k~~~~i~---------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~  140 (313)
T KOG1407|consen   94 IRSGKCTARIE---------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI  140 (313)
T ss_pred             eccCcEEEEee---------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence            99988754332                                 223334678999999999999999999999999887


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      +...+. ...+..+.|+.++ +++.....|.|.|......+      +...+..|.....|+.|+|+|++||+|+.|..+
T Consensus       141 ~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk------pv~si~AH~snCicI~f~p~GryfA~GsADAlv  213 (313)
T KOG1407|consen  141 VNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK------PVQSIKAHPSNCICIEFDPDGRYFATGSADALV  213 (313)
T ss_pred             eehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc------cccccccCCcceEEEEECCCCceEeecccccee
Confidence            766543 5567788888777 77777777999998876433      477888999999999999999999999999999


Q ss_pred             EEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728          334 NFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      .+||++...+. +.+..+.-+|  ++|+.+|++||+|++|..|-|=+++++..  +..++ +.++...|+|+|...    
T Consensus       214 SLWD~~ELiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~--~~eI~-~~~~t~tVAWHPk~~----  285 (313)
T KOG1407|consen  214 SLWDVDELICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR--VWEIP-CEGPTFTVAWHPKRP----  285 (313)
T ss_pred             eccChhHhhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe--EEEee-ccCCceeEEecCCCc----
Confidence            99999876555 4445555555  55666899999999999999999999984  44444 788999999999988    


Q ss_pred             cceEEEEEecCC---------CcEEEEEcc
Q 047728          412 EKRWILYSGSLD---------KSVKMWRVS  432 (474)
Q Consensus       412 ~~~~~l~s~s~D---------g~i~vw~~~  432 (474)
                          +||-+++|         |.|++|-+.
T Consensus       286 ----LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  286 ----LLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             ----eeeEEecCCCCccccccceeEEecCC
Confidence                78777655         456665543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7.4e-29  Score=232.93  Aligned_cols=278  Identities=24%  Similarity=0.386  Sum_probs=229.9

Q ss_pred             eeeeecCcEEEEEEcCCEEE-EeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCC
Q 047728          105 SLVREEGHIYSLAAAGDLLY-TGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKD  179 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~~~~l~-tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~  179 (474)
                      ++.+|+..|.+++++.+-++ ..+..+.|+||+..  +++.++...  .+.+..|-  +.++++|...|.+.++|+.+..
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            57799999999999844333 33336789999854  566666544  66777776  6699999999999999998876


Q ss_pred             cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-----cce
Q 047728          180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-----YKC  254 (474)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~  254 (474)
                      ....                                ...|.+.|++++.+||+..+++|+.|.+|++||..-     +..
T Consensus       446 l~Et--------------------------------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~  493 (888)
T KOG0306|consen  446 LVET--------------------------------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ  493 (888)
T ss_pred             hhhh--------------------------------hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc
Confidence            5422                                234999999999999999999999999999999741     111


Q ss_pred             eeeee-------ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728          255 LESVI-------AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       255 ~~~~~-------~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      ...+.       .-.+.|.|+.++||+ +|+++--|.+|+||-+.+.+      +...+.+|.-+|.|+.++||++.+++
T Consensus       494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK------FflsLYGHkLPV~smDIS~DSklivT  567 (888)
T KOG0306|consen  494 KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK------FFLSLYGHKLPVLSMDISPDSKLIVT  567 (888)
T ss_pred             ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee------eeeeecccccceeEEeccCCcCeEEe
Confidence            11111       235789999999999 89999999999999887543      56788999999999999999999999


Q ss_pred             EcCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          327 GSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      |+.|..|++|-++-+.+. ..+.+|...|+++.  |....+++++.|+.|+-||-...+  ++..+.+|...|+|++.+|
T Consensus       568 gSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe--~iq~L~~H~~ev~cLav~~  644 (888)
T KOG0306|consen  568 GSADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE--EIQKLDGHHSEVWCLAVSP  644 (888)
T ss_pred             ccCCCceEEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh--hheeeccchheeeeeEEcC
Confidence            999999999999988776 45568888887765  567899999999999999988776  6789999999999999999


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEccC
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +|.        +++++|.|.+|++|....
T Consensus       645 ~G~--------~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  645 NGS--------FVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             CCC--------eEEeccCCceeEeeeccC
Confidence            999        999999999999998765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1e-28  Score=222.68  Aligned_cols=300  Identities=15%  Similarity=0.232  Sum_probs=226.6

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc------ccccc-cCccCEEEEEec--CCEEEEEeC
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE------FSGFK-SNSGLVKAIVIS--NEKIFSGHQ  166 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~------~~~~~-~h~~~V~~i~~~--~~~l~s~~~  166 (474)
                      .|...-..|.+|+..|.+++++  |-.|++|+.|-+|++||.+..      ++.+. .....|.++.|+  ++.|++.+.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            4555556788999999998877  889999999999999996532      22222 235568888887  788888888


Q ss_pred             CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEE
Q 047728          167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFK  245 (474)
Q Consensus       167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~  245 (474)
                      ....+|+|-+..+......                ...|+.-.    ..-.||...++|.+|+| +...+++++.||+++
T Consensus       235 ~aqakl~DRdG~~~~e~~K----------------GDQYI~Dm----~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR  294 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSK----------------GDQYIRDM----YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR  294 (641)
T ss_pred             CcceeEEccCCceeeeeec----------------cchhhhhh----hccCCceeeeeccccccCcccceEEecCCCcEE
Confidence            8899999988765432111                11121111    11246999999999999 456899999999999


Q ss_pred             EEEcCCcce-eeeee-----ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc--cEEEEE
Q 047728          246 VWRTSDYKC-LESVI-----AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC--AVTALA  316 (474)
Q Consensus       246 iwd~~~~~~-~~~~~-----~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~  316 (474)
                      |||+...+. +..++     +..-+++.++|++++ .|++|+.||.|.+|+........   .......|..  .|+||.
T Consensus       295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p---~~~vk~AH~~g~~Itsi~  371 (641)
T KOG0772|consen  295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP---VMKVKDAHLPGQDITSIS  371 (641)
T ss_pred             EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc---ceEeeeccCCCCceeEEE
Confidence            999976543 33332     223478899999999 99999999999999985433221   2233344544  899999


Q ss_pred             EcCCCCEEEEEcCCCcEEEeecCcccccceee----eecceeeEEEEecCCEEEEEeC------CCcEEEEECCCCceEE
Q 047728          317 ISPDAAIVYCGSSDGLVNFWERELNLSHGGVL----RGHKLAILCLVTAGNLVFSGSA------DMSICIWRRKENEHIC  386 (474)
Q Consensus       317 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~  386 (474)
                      |+++|++|++-+.|+++++||++..+......    ......-.||+|+.++|++|..      .|.+.+||..+.+  .
T Consensus       372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--~  449 (641)
T KOG0772|consen  372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--T  449 (641)
T ss_pred             eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--e
Confidence            99999999999999999999999876554333    3344566899999999999873      5789999998877  3


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +..+.-....|..+.|+|.-+        .|+.|+.||.++||=
T Consensus       450 v~ki~i~~aSvv~~~WhpkLN--------Qi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  450 VYKIDISTASVVRCLWHPKLN--------QIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEecCCCceEEEEeecchhh--------heeeecCCCceEEEE
Confidence            556665678899999999988        688888899999873

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-29  Score=207.66  Aligned_cols=233  Identities=21%  Similarity=0.253  Sum_probs=200.0

Q ss_pred             cCcEEEEEEc---CCEEEEeeCCCcEEEEeCC---ccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCc
Q 047728          110 EGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ---REFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDA  180 (474)
Q Consensus       110 ~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~---~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~  180 (474)
                      ++.+..++++   .+.+++++.||++++||+.   .++..++.|...|.++.|+   ++.+++++.|++|++|+...++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            4556777776   5689999999999999954   6788999999999999998   66888999999999999887655


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVI  259 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  259 (474)
                      +                                .++.+|...|...+|+| ..+++++++.|+++++||++..-....+.
T Consensus       140 v--------------------------------~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~  187 (311)
T KOG0277|consen  140 V--------------------------------QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE  187 (311)
T ss_pred             e--------------------------------EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence            4                                24567999999999999 78899999999999999998655455589


Q ss_pred             ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEe
Q 047728          260 AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFW  336 (474)
Q Consensus       260 ~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~  336 (474)
                      .|...+.++.|+.-+  .+++|+.|+.|+.||++....     +...+.+|.-.|+.+.|+| ....|++++.|-++++|
T Consensus       188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw  262 (311)
T KOG0277|consen  188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW  262 (311)
T ss_pred             eccceeEeecccccCCcEEEecCCCceEEEEehhhccc-----cceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence            999999999998765  899999999999999987654     4667789999999999999 45789999999999999


Q ss_pred             ecCcccccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEEC
Q 047728          337 ERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       337 d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~  379 (474)
                      |...+.........|...+..+.+   ++.++|+++.|+.++||+.
T Consensus       263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            998776666777778887766654   5889999999999999984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.9e-29  Score=211.90  Aligned_cols=284  Identities=18%  Similarity=0.316  Sum_probs=223.7

Q ss_pred             eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--------------------ccccccccCccCEEEEEec--CC
Q 047728          104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--------------------REFSGFKSNSGLVKAIVIS--NE  159 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--------------------~~~~~~~~h~~~V~~i~~~--~~  159 (474)
                      ..+..|++++.+-+|+  |.++|||+.|-.|+|.|..                    ..++++-.|.+.|+++.|+  ..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            4577899998886665  9999999999999999855                    1255677899999999999  56


Q ss_pred             EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728          160 KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS  239 (474)
Q Consensus       160 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  239 (474)
                      .|++|+.|++|+++|+.........+.                              .....+|.+|.|+|.|.+|+.|.
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------~qd~~~vrsiSfHPsGefllvgT  235 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------FQDTEPVRSISFHPSGEFLLVGT  235 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHH------------------------------hhccceeeeEeecCCCceEEEec
Confidence            899999999999999987544322211                              12556899999999999999999


Q ss_pred             CCCcEEEEEcCCcceeeee---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-ec-ccccEE
Q 047728          240 WDKTFKVWRTSDYKCLESV---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LK-QECAVT  313 (474)
Q Consensus       240 ~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~v~  313 (474)
                      .-.++++||+++.++...-   ..|.+.|+++.+++.+ +.++++.||.|++||--...      +..++ .. ....|.
T Consensus       236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r------Cv~t~~~AH~gsevc  309 (430)
T KOG0640|consen  236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR------CVRTIGNAHGGSEVC  309 (430)
T ss_pred             CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH------HHHHHHhhcCCceee
Confidence            9999999999998886654   3588999999999999 89999999999999954322      12222 22 346799


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-e-----eeEEEEecCCEEEEEe-CCCcEEEEECCCCceEE
Q 047728          314 ALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-L-----AILCLVTAGNLVFSGS-ADMSICIWRRKENEHIC  386 (474)
Q Consensus       314 ~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~-----~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~  386 (474)
                      +..|..+++++++.+.|..+++|.+.++..+........ .     .-..|.....+++.-. ..+.++-||.++.....
T Consensus       310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~  389 (430)
T KOG0640|consen  310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA  389 (430)
T ss_pred             eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence            999999999999999999999999999877654433211 1     1122333456666554 35789999999887543


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      + .-.+|++++..+.-+|.+.        .+++|+.|-.+++|--+
T Consensus       390 l-~slgHn~a~R~i~HSP~~p--------~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  390 L-LSLGHNGAVRWIVHSPVEP--------AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             h-cccCCCCCceEEEeCCCCC--------ceeeecccceeeeeeec
Confidence            3 3357999999999999998        89999999999999643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-28  Score=204.64  Aligned_cols=282  Identities=18%  Similarity=0.204  Sum_probs=218.1

Q ss_pred             ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728          143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF  220 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  220 (474)
                      .+++|..+++.|.++  |++|++++.|.+..||-..+++.+                                +.+.+|+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--------------------------------Gty~GHt   52 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--------------------------------GTYDGHT   52 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--------------------------------eeecCCC
Confidence            467899999999998  899999999999999987766543                                5788899


Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeC------CCcEEEEEcccCC
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA------DGTVKVWRRELQG  294 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~------dg~i~iwd~~~~~  294 (474)
                      +.|+|+....+.+.+++|+.|.++++||+++|+++..++. ..+|..+.|++++.++..+.      .+.|.++|++...
T Consensus        53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            9999999999999999999999999999999999999875 77899999999994333333      3579999998543


Q ss_pred             Cc-eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCC
Q 047728          295 KG-TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSAD  371 (474)
Q Consensus       295 ~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~d  371 (474)
                      .. ....+...+..+...++.+-|.|-+.+|++|.+||.|.+||.++++........|...|  ++++++..++++++.|
T Consensus       132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence            21 12223455566778999999999999999999999999999999877777766676666  5667789999999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-cCCCc-EEEEEccCCCCC-----CCCCccc
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG-SLDKS-VKMWRVSEQAPP-----LVSTTQQ  444 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~-i~vw~~~~~~~~-----~~~~~~~  444 (474)
                      .+-++||..+.+  ++.++. -..||++.+++|...        .++.| +.+.. |.-=+.+.++-.     ....+..
T Consensus       212 ttakl~D~~tl~--v~Kty~-te~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi  280 (327)
T KOG0643|consen  212 TTAKLVDVRTLE--VLKTYT-TERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI  280 (327)
T ss_pred             ccceeeecccee--eEEEee-ecccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence            999999999877  344444 457999999999877        44444 43321 111111111111     1233566


Q ss_pred             ccccCCCCCCCccccCCCCCcCCceeec
Q 047728          445 HPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       445 ~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      ..+++|-++|+++    +|+|||+.-.+
T Consensus       281 grvkGHFGPINsv----AfhPdGksYsS  304 (327)
T KOG0643|consen  281 GRVKGHFGPINSV----AFHPDGKSYSS  304 (327)
T ss_pred             ccccccccCccee----EECCCCccccc
Confidence            7889999999999    55566655443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.5e-28  Score=229.17  Aligned_cols=274  Identities=25%  Similarity=0.424  Sum_probs=229.6

Q ss_pred             eeeeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeC-Ccc---ccccccCccCEEE-EEec---CCEEEEEeCCCeEE
Q 047728          101 VLIGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKN-QRE---FSGFKSNSGLVKA-IVIS---NEKIFSGHQDGKIR  171 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~-~~~---~~~~~~h~~~V~~-i~~~---~~~l~s~~~dg~i~  171 (474)
                      ++-+.+.+|+..|..++.. +..+++++.||++++|+. ++.   ...+.+|.+-|.. +++.   +.+|++|+.|++|.
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            5667899999999888876 557999999999999984 333   2346777777776 7765   45799999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      +|...+....                                .++.+|...|.|++...++. +++|++|.++++|.  .
T Consensus        85 v~~~~~~~P~--------------------------------~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~  129 (745)
T KOG0301|consen   85 VFKLSQAEPL--------------------------------YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--I  129 (745)
T ss_pred             EEecCCCCch--------------------------------hhhhccccceeeeecCCcCc-eEecccccceEEec--c
Confidence            9999887654                                45678999999999887776 99999999999996  4


Q ss_pred             cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG  331 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  331 (474)
                      +++...+.+|...|++++..|++.+++|+.|.+|++|.-..        ...++.+|...|+.+++-+++. +++++.||
T Consensus       130 ~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~--------~l~tf~gHtD~VRgL~vl~~~~-flScsNDg  200 (745)
T KOG0301|consen  130 GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT--------LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDG  200 (745)
T ss_pred             hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCc--------hhhhhccchhheeeeEEecCCC-eEeecCCc
Confidence            57778899999999999999999999999999999997532        4678889999999999997654 66788999


Q ss_pred             cEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728          332 LVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       332 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  409 (474)
                      .|++|++... .+ ....+|...+.+++  .++..++++++|++++||+..  +  +.+.+.--...|+++.+-+++.  
T Consensus       201 ~Ir~w~~~ge-~l-~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e--~~q~I~lPttsiWsa~~L~NgD--  272 (745)
T KOG0301|consen  201 SIRLWDLDGE-VL-LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--E--CVQVITLPTTSIWSAKVLLNGD--  272 (745)
T ss_pred             eEEEEeccCc-ee-eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--c--eEEEEecCccceEEEEEeeCCC--
Confidence            9999999543 33 46678999888887  468899999999999999887  2  5666665556899999999997  


Q ss_pred             cccceEEEEEecCCCcEEEEEccC
Q 047728          410 SREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                             +++|+.||.||||....
T Consensus       273 -------Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  273 -------IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             -------EEEeccCceEEEEEecc
Confidence                   89999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.4e-29  Score=221.26  Aligned_cols=294  Identities=23%  Similarity=0.354  Sum_probs=232.5

Q ss_pred             ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      +.....|.-+|.+++++  +.+.++++.||+|.-|++.++..........     ....     ..+......+    .+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k-----~~~~~~k~~r----~~  200 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLK-----SHGNPLKESR----KG  200 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-----hhhh-----hccCCCCccc----cc
Confidence            55667899999999998  5599999999999999999887542111110     0000     0000011111    26


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      |...+.+++.++|+++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-... .+++++.|+.|++|+++...   
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s---  277 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS---  277 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---
Confidence            99999999999999999999999999999999999999999999999999998665 99999999999999988654   


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEeCCCcEEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGSADMSICI  376 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~i  376 (474)
                         ...++.+|...|..|....-++.+-+|+.|+++++|++...  ...++.++...+-|+++ +...+++|+.+|.|.+
T Consensus       278 ---~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  278 ---YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL  352 (479)
T ss_pred             ---HHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence               36788999999999999988999999999999999999543  34577888888888776 7889999999999999


Q ss_pred             EECCCCceEEEEeecC----------CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccc
Q 047728          377 WRRKENEHICLSMLTG----------HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHP  446 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~  446 (474)
                      |++...+++.......          +..+|++|+..|...        ++++|+.+|.|++|.+.++....   .....
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd--------L~asGS~~G~vrLW~i~~g~r~i---~~l~~  421 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD--------LLASGSWSGCVRLWKIEDGLRAI---NLLYS  421 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCc--------eEEecCCCCceEEEEecCCcccc---ceeee
Confidence            9999888655433321          123799999999988        99999999999999999985432   23333


Q ss_pred             ccCCCCCCCccccCCCCCcCCceeec
Q 047728          447 LEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       447 ~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      +. ..+.|++|    +|+++|+.|+.
T Consensus       422 ls-~~GfVNsl----~f~~sgk~iva  442 (479)
T KOG0299|consen  422 LS-LVGFVNSL----AFSNSGKRIVA  442 (479)
T ss_pred             cc-cccEEEEE----EEccCCCEEEE
Confidence            33 45568888    67888885543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.3e-29  Score=236.55  Aligned_cols=271  Identities=23%  Similarity=0.319  Sum_probs=202.3

Q ss_pred             cc-cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee---------------eccc-------------Ccc
Q 047728          144 FK-SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR---------------VGTL-------------PTF  192 (474)
Q Consensus       144 ~~-~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------------~~~~-------------~~~  192 (474)
                      +. .|.++|.++.|+  |.|||+|+.||.|+||.+...+......               ....             ...
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 899999999998  8899999999999999987622110000               0000             000


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF  272 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  272 (474)
                      .....+..-+.....+...+...|.||.+.|.+|.|+.+ ++|++++.|.+|++|++...+|+..| .|.+.|+||+|+|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP  419 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP  419 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence            000011122233334455566778999999999999976 58999999999999999999999988 6999999999999


Q ss_pred             CC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--
Q 047728          273 DG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL--  348 (474)
Q Consensus       273 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--  348 (474)
                      -.  ++++|+-||.||||++...+       +.....-..-|++++|.|+|+..++|+.+|.+++|+....+......  
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~-------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKK-------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCe-------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            76  99999999999999987433       23344445789999999999999999999999999987654332211  


Q ss_pred             ------eecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc--ceEEEEEeeCCccccccceEEE
Q 047728          349 ------RGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG--PVKCLAVEKDDESLSREKRWIL  417 (474)
Q Consensus       349 ------~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l  417 (474)
                            ..|. .|+.|.+   +...|++.+.|..|+|||.+...  .+..++++..  .-....|+.|++        +|
T Consensus       493 ~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~--lv~KfKG~~n~~SQ~~Asfs~Dgk--------~I  561 (712)
T KOG0283|consen  493 LHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD--LVHKFKGFRNTSSQISASFSSDGK--------HI  561 (712)
T ss_pred             eccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh--hhhhhcccccCCcceeeeEccCCC--------EE
Confidence                  1122 5666654   34568888999999999998776  3456665433  335677899999        99


Q ss_pred             EEecCCCcEEEEEccCC
Q 047728          418 YSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       418 ~s~s~Dg~i~vw~~~~~  434 (474)
                      +++++|..|+||++...
T Consensus       562 Vs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EEeecCceEEEEeCCCC
Confidence            99999999999998543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.5e-28  Score=237.71  Aligned_cols=245  Identities=26%  Similarity=0.432  Sum_probs=214.0

Q ss_pred             cceeeee-eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEecCCEEEEEeCCCeEEEE
Q 047728           99 PNVLIGS-LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVW  173 (474)
Q Consensus        99 ~~~~~~~-l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vw  173 (474)
                      ....+.. +.+|.+.|+++++.  +++|++|+.|.+++|||  .+.+...+.+|...|.++...+..+++|+.|.+|++|
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW  316 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEE
Confidence            3445555 99999999999999  99999999999999999  4577889999999999999999999999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      +++++..+.                                ++.+|..+|.++.++  +.++++|+.|++|++||+.+++
T Consensus       317 ~v~n~~~l~--------------------------------l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  317 DVTNGACLN--------------------------------LLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK  362 (537)
T ss_pred             eccCcceEE--------------------------------EeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence            999876642                                344599999999997  7899999999999999999999


Q ss_pred             eeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          254 CLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      ++.++.+|...|.++.+.....+++|+.|++|++||++...     .+...+.+|..-+..+.+  .+++|++++.|+.|
T Consensus       363 cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~I  435 (537)
T KOG0274|consen  363 CLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTI  435 (537)
T ss_pred             eeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--ccceeEeccccccE
Confidence            99999999999999988775699999999999999998763     257788888888855554  57899999999999


Q ss_pred             EEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728          334 NFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      ++||...+.........|...+.++......+++++.|+.+++||+++++.
T Consensus       436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  436 KLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             EEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence            999999887775444436788888888778999999999999999998873

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.1e-27  Score=231.53  Aligned_cols=233  Identities=16%  Similarity=0.211  Sum_probs=179.7

Q ss_pred             eeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCc
Q 047728          215 LWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGT  284 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~  284 (474)
                      .+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++       +.+..+.+|...|.+++|+|++  .|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4567999999999999 8899999999999999999764       3567788999999999999975  8999999999


Q ss_pred             EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee---eEEEEec
Q 047728          285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA---ILCLVTA  361 (474)
Q Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~---v~~~~~~  361 (474)
                      |+|||++...      ....+..|...|.+++|+|++.+|++++.|+.|++||++++... ..+.+|...   ...+.++
T Consensus       150 VrIWDl~tg~------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        150 VNVWDVERGK------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-SSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             EEEEECCCCe------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-EEEecCCCCcceEEEEcCC
Confidence            9999998643      24556678899999999999999999999999999999987654 344566543   2445566


Q ss_pred             CCEEEEEe----CCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728          362 GNLVFSGS----ADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQA  435 (474)
Q Consensus       362 ~~~l~sgs----~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~  435 (474)
                      +..+++++    .|+.|++||+++.... +..... +...+....|++++.        +|++++ .|+.|++|++.++.
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~--------~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTN--------LLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCC--------EEEEEEeCCCeEEEEEeeCCc
Confidence            66776654    4799999999875432 333332 334566677889988        777777 59999999998874


Q ss_pred             CCCCCCcccccccCCCCCCCccccCCCCCcCCce
Q 047728          436 PPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRI  469 (474)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~  469 (474)
                      ....      .-..+...+.+++|.|.+..|-+-
T Consensus       294 ~~~~------~~~~s~~~~~g~~~~pk~~~dv~~  321 (493)
T PTZ00421        294 LTFC------SSYSSVEPHKGLCMMPKWSLDTRK  321 (493)
T ss_pred             eEEE------eeccCCCCCcceEecccccccccc
Confidence            3211      111244567888888887776543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3e-28  Score=238.55  Aligned_cols=301  Identities=19%  Similarity=0.252  Sum_probs=227.7

Q ss_pred             cCcEEEEE--EcCCEEEEee--CCCcEEEEeC--------------CccccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728          110 EGHIYSLA--AAGDLLYTGS--DSKNIRVWKN--------------QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGK  169 (474)
Q Consensus       110 ~~~i~~~~--~~~~~l~tgs--~dg~v~vwd~--------------~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~  169 (474)
                      +..|.+++  ++|..++||+  .||.++||+.              .+.+.....|.+.|+|+.|+  +.+||+|+.|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            45577766  5588999999  8999999952              23456678899999999998  779999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      |.||+.........+..              ...............+.+|...|.+++|+|++.+|++++.|++|.|||.
T Consensus        93 v~iW~~~~~~~~~~fgs--------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~  158 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGS--------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA  158 (942)
T ss_pred             EEEeeecccCCcccccc--------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence            99999875111000000              0000011112233567789999999999999999999999999999999


Q ss_pred             CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      .+++.+..+.+|...|..+.|.|-| +|++-+.|++|++|++..-+.................+..+.|+|||.+|++..
T Consensus       159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            9999999999999999999999999 999999999999999654222111111111122345688999999999999864


Q ss_pred             C----CCcEEEeecCcccccceeeeecceeeEEEEec-------CC------------EEEEEeCCCcEEEEECCCCceE
Q 047728          329 S----DGLVNFWERELNLSHGGVLRGHKLAILCLVTA-------GN------------LVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       329 ~----dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-------~~------------~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      .    -.++.|.+..+. .....+.+|..++.++.++       .+            .+|+|+.|++|.||.....++.
T Consensus       239 A~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             hccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            3    336778776443 3446677898888777653       11            6889999999999999766643


Q ss_pred             EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                       +....-....|.+++|+|||.        .|+.+|.||+|.+..+++.
T Consensus       318 -~vi~~lf~~SI~DmsWspdG~--------~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  318 -FVIHNLFNKSIVDMSWSPDGF--------SLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             -hhhhhhhcCceeeeeEcCCCC--------eEEEEecCCeEEEEEcchH
Confidence             223334567899999999999        8999999999999999764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.4e-28  Score=216.99  Aligned_cols=275  Identities=21%  Similarity=0.308  Sum_probs=223.3

Q ss_pred             eeecCcEEEEEEcC----CEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCC
Q 047728          107 VREEGHIYSLAAAG----DLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       107 ~~h~~~i~~~~~~~----~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      ......|.+++|+.    ++.+|+|.  .|.||+..  .....+......|.++.|.  |..|++|+..|.|+|+|..+.
T Consensus        23 ~ke~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccccCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence            34456799999884    45555543  48888744  4455566677889999997  889999999999999996553


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLES  257 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~  257 (474)
                      ..+                                ..+.+|+.+|..+.|+| ++..|++|++|+.+++||+.+......
T Consensus       101 ~iL--------------------------------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~  148 (487)
T KOG0310|consen  101 VIL--------------------------------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE  148 (487)
T ss_pred             HHH--------------------------------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence            222                                23456999999999999 567788999999999999999887778


Q ss_pred             eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728          258 VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF  335 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v  335 (474)
                      +.+|++.|.|.+++|..  ++++|+.||.|++||++....      ......|..+|..+.+-|.|..+++++. ..|++
T Consensus       149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~------~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV  221 (487)
T KOG0310|consen  149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS------RVVELNHGCPVESVLALPSGSLIASAGG-NSVKV  221 (487)
T ss_pred             ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc------eeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence            99999999999999986  899999999999999987642      3556789999999999999999998764 57999


Q ss_pred             eecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          336 WERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       336 ~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      ||+.++.........|...|+|+..  ++..|++|+-|+.+++||+.+.+  .+..+. ..++|.+++.+|+++      
T Consensus       222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K--vv~s~~-~~~pvLsiavs~dd~------  292 (487)
T KOG0310|consen  222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK--VVHSWK-YPGPVLSIAVSPDDQ------  292 (487)
T ss_pred             EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE--EEEeee-cccceeeEEecCCCc------
Confidence            9999776666666668888888766  56999999999999999977766  334443 568999999999998      


Q ss_pred             eEEEEEecCCCcEEEEEccC
Q 047728          414 RWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~~~~  433 (474)
                        .++.|..||.+.+=+...
T Consensus       293 --t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  293 --TVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             --eEEEecccceeeeehhhc
Confidence              899999999887775443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.6e-28  Score=217.36  Aligned_cols=270  Identities=19%  Similarity=0.269  Sum_probs=217.7

Q ss_pred             cceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc------------cccccccCccCEEEEEec---CCE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR------------EFSGFKSNSGLVKAIVIS---NEK  160 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~------------~~~~~~~h~~~V~~i~~~---~~~  160 (474)
                      ....+.....|.+.|+.+..-   ..++|+++..+.|.|||..+            +-..+.+|.+.=.+++|+   ...
T Consensus       113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~  192 (422)
T KOG0264|consen  113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT  192 (422)
T ss_pred             cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccccee
Confidence            345556667899999987754   66899999999999998431            112678898888889998   568


Q ss_pred             EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEE
Q 047728          161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSAS  239 (474)
Q Consensus       161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s  239 (474)
                      |++++.|++|++||+.........                         ......+.+|.+.|..++|++ +..+|++++
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~-------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKV-------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCcc-------------------------ccceEEeecCCcceehhhccccchhhheeec
Confidence            999999999999999876542000                         011245677999999999999 678899999


Q ss_pred             CCCcEEEEEcC--CcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          240 WDKTFKVWRTS--DYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       240 ~dg~i~iwd~~--~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      .|+.+.|||++  +.++.....+|...|+|++|+|-+  .||+|+.|++|.+||+|....     ....+.+|+..|.++
T Consensus       248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V  322 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQV  322 (422)
T ss_pred             CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEE
Confidence            99999999999  566777888999999999999987  899999999999999997665     578889999999999


Q ss_pred             EEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728          316 AISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS  394 (474)
Q Consensus       316 ~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~  394 (474)
                      .|+| ....|++++.|+.+.+||+..-.......                             |...+.+.+++.-.||.
T Consensus       323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e-----------------------------da~dgppEllF~HgGH~  373 (422)
T KOG0264|consen  323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE-----------------------------DAEDGPPELLFIHGGHT  373 (422)
T ss_pred             EeCCCCCceeEecccCCcEEEEeccccccccChh-----------------------------hhccCCcceeEEecCcc
Confidence            9999 56788999999999999987432221100                             12233444577888999


Q ss_pred             cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..|..+.|+|....       .++|.++|+.+.||++...
T Consensus       374 ~kV~DfsWnp~ePW-------~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  374 AKVSDFSWNPNEPW-------TIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             cccccccCCCCCCe-------EEEEecCCceEEEeecccc
Confidence            99999999999874       8999999999999999753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.6e-28  Score=203.51  Aligned_cols=274  Identities=18%  Similarity=0.208  Sum_probs=207.6

Q ss_pred             ccccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      +..-..-.+.|.+|+|++   ..+++++.||+||+|+++.......+                              ...
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------------------a~~   69 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------------------AQQ   69 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------------------hhh
Confidence            333444677899999984   46779999999999999874221111                              123


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCC
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~  294 (474)
                      .|.++|.+++|+.+|..+++|+.|+.+++||+.++ .+..+..|..+|..+.|-+..   .|++|+.|.+|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            49999999999999999999999999999999998 566778999999999998765   78999999999999999654


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee---eecceeeEEEEecCCEEEEEeCC
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL---RGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ..       ......+.+.++..  ...+++++..+..|.+|+++++.......   ..+....+++..+.+..+.|+.+
T Consensus       149 pv-------~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  149 PV-------ATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             ee-------eeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence            31       12222334444433  45688889999999999997764332221   23344455566677777999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCcc---------ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCc
Q 047728          372 MSICIWRRKENEHICLSMLTGHSG---------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTT  442 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~  442 (474)
                      |.+-|..+.......-..++.|..         +|++|+|+|...        .|+|+|.||++.+||-...       .
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg--------tlvTaGsDGtf~FWDkdar-------~  284 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG--------TLVTAGSDGTFSFWDKDAR-------T  284 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc--------eEEEecCCceEEEecchhh-------h
Confidence            999999998753333456666652         588999999888        8999999999999998765       3


Q ss_pred             ccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          443 QQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       443 ~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .+...+.|..+|++.    +|+.+|.+.+.+
T Consensus       285 kLk~s~~~~qpItcc----~fn~~G~ifaYA  311 (347)
T KOG0647|consen  285 KLKTSETHPQPITCC----SFNRNGSIFAYA  311 (347)
T ss_pred             hhhccCcCCCcccee----EecCCCCEEEEE
Confidence            344455678888888    788889888764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=7.8e-29  Score=211.30  Aligned_cols=275  Identities=20%  Similarity=0.270  Sum_probs=226.9

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      ....+.|..|+  +++|++|+.||.|.+|+..+++.....+....                        ..+.-+.++|.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq------------------------d~fMMmd~aVl  267 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------------------------DNFMMMDDAVL  267 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh------------------------cceeecccceE
Confidence            45567788887  77999999999999999999876543332211                        23445899999


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      |++|+.|...|++|+.||.|++|.+++|.|++.+. +|...|+|+.|+.|+ .+++++.|.++++.-+..++      +.
T Consensus       268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK------~L  341 (508)
T KOG0275|consen  268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK------CL  341 (508)
T ss_pred             EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch------hH
Confidence            99999999999999999999999999999999997 899999999999999 99999999999999888665      47


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee-ecceeeEEEE---ecCCEEEEEeCCCcEEEEE
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR-GHKLAILCLV---TAGNLVFSGSADMSICIWR  378 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~---~~~~~l~sgs~dg~i~iwd  378 (474)
                      ..+.+|.+.|+...|.++|..+++++.||+|++|+..+..+...+.. +...++..+.   .+...++++...++|.|-+
T Consensus       342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence            78899999999999999999999999999999999998877654433 3334444443   2577899999999999999


Q ss_pred             CCCCceEEEEeec---CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728          379 RKENEHICLSMLT---GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN  455 (474)
Q Consensus       379 ~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~  455 (474)
                      +...-   +..+.   ...+...+.+++|.|.        ++++.++|+.++.|.+.++       ...+.+..|...+-
T Consensus       422 ~qGQv---VrsfsSGkREgGdFi~~~lSpkGe--------wiYcigED~vlYCF~~~sG-------~LE~tl~VhEkdvI  483 (508)
T KOG0275|consen  422 MQGQV---VRSFSSGKREGGDFINAILSPKGE--------WIYCIGEDGVLYCFSVLSG-------KLERTLPVHEKDVI  483 (508)
T ss_pred             ccceE---EeeeccCCccCCceEEEEecCCCc--------EEEEEccCcEEEEEEeecC-------ceeeeeeccccccc
Confidence            87542   33332   2345677888999999        9999999999999999998       55667778888888


Q ss_pred             ccccCC------CCCcCCce
Q 047728          456 SLPYAP------SFSSQGRI  469 (474)
Q Consensus       456 ~l~~~p------~~s~Dg~~  469 (474)
                      .++-+|      +||.||-+
T Consensus       484 Gl~HHPHqNllAsYsEDgll  503 (508)
T KOG0275|consen  484 GLTHHPHQNLLASYSEDGLL  503 (508)
T ss_pred             ccccCcccchhhhhcccchh
Confidence            888887      67888854

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.5e-27  Score=228.96  Aligned_cols=233  Identities=18%  Similarity=0.214  Sum_probs=178.0

Q ss_pred             ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          143 GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      .+.+|.+.|.+++|+   +++|++|+.|++|++||+.........                         ......+.+|
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------------~~~l~~L~gH  124 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------------SDPIVHLQGH  124 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-------------------------CcceEEecCC
Confidence            477899999999997   458999999999999999765321000                         0011245679


Q ss_pred             cCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          220 FDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       220 ~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      ...|.+++|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|++++ .|++++.|+.|++||++.+..  
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~--  202 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI--  202 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE--
Confidence            9999999999975 799999999999999999999999999999999999999999 899999999999999986542  


Q ss_pred             eeeeeeeeeccccc-EEEEEEcCCCCEEEEEc----CCCcEEEeecCcccccceeeeecc-ee--eEEEEecCCEEEEEe
Q 047728          298 KHFFSQTLLKQECA-VTALAISPDAAIVYCGS----SDGLVNFWERELNLSHGGVLRGHK-LA--ILCLVTAGNLVFSGS  369 (474)
Q Consensus       298 ~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~----~dg~i~v~d~~~~~~~~~~~~~~~-~~--v~~~~~~~~~l~sgs  369 (474)
                          ...+..|... +..+.|.+++..+++++    .|+.|++||+++..........+. ..  ...+++++++|++|+
T Consensus       203 ----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        203 ----VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             ----EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence                3445556543 45678888877777654    478999999987654433332222 22  234567889998887


Q ss_pred             -CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          370 -ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       370 -~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                       .|+.|++||+.+++...... ..+..++.+++|.|...
T Consensus       279 kgDg~Iriwdl~~~~~~~~~~-~~s~~~~~g~~~~pk~~  316 (493)
T PTZ00421        279 KGEGNIRCFELMNERLTFCSS-YSSVEPHKGLCMMPKWS  316 (493)
T ss_pred             eCCCeEEEEEeeCCceEEEee-ccCCCCCcceEeccccc
Confidence             59999999999887543222 23566788999998643

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.5e-27  Score=200.34  Aligned_cols=257  Identities=20%  Similarity=0.304  Sum_probs=203.4

Q ss_pred             cCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcc----ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCc
Q 047728          110 EGHIYSLAAA---GDLLYTGSDSKNIRVWKNQRE----FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDA  180 (474)
Q Consensus       110 ~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~  180 (474)
                      ++.|.+++|+   ..+++.||.||+||+|+.+..    -+....|.++|.+++|+  +..+++|+.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            4567777776   457889999999999996642    24556799999999998  77999999999999999999865


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC--EEEEEECCCcEEEEEcCCcceeeee
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      ..                                 ...|..+|.++.|-+...  .|++|++|++|+.||++...++.++
T Consensus       107 ~~---------------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen  107 SQ---------------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             ee---------------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence            42                                 223999999999988654  8999999999999999999988888


Q ss_pred             eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          259 IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       259 ~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                      .. .+.++++..-. .+++++..+..|.+|+++.+....+    .......-.++|++..++....+.|+-+|.+.+..+
T Consensus       154 ~L-PeRvYa~Dv~~-pm~vVata~r~i~vynL~n~~te~k----~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i  227 (347)
T KOG0647|consen  154 QL-PERVYAADVLY-PMAVVATAERHIAVYNLENPPTEFK----RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI  227 (347)
T ss_pred             ec-cceeeehhccC-ceeEEEecCCcEEEEEcCCCcchhh----hhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence            65 56677765542 3899999999999999976544221    111223456899999998888899999999999887


Q ss_pred             Ccc-cccceeeeecce-----------eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          339 ELN-LSHGGVLRGHKL-----------AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       339 ~~~-~~~~~~~~~~~~-----------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      ..+ ......++.|+.           .-++|.|.-..|++++.||++.+||-+...  .+.....|..+|++.+|+.+|
T Consensus       228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~--kLk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART--KLKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh--hhhccCcCCCccceeEecCCC
Confidence            764 233345566652           125677788899999999999999987665  466778899999999999999


Q ss_pred             c
Q 047728          407 E  407 (474)
Q Consensus       407 ~  407 (474)
                      .
T Consensus       306 ~  306 (347)
T KOG0647|consen  306 S  306 (347)
T ss_pred             C
Confidence            8

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=9.9e-27  Score=225.77  Aligned_cols=250  Identities=13%  Similarity=0.188  Sum_probs=185.6

Q ss_pred             eeCCCcEEEEeCC--ccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeec
Q 047728          126 GSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSM  200 (474)
Q Consensus       126 gs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (474)
                      |+.++.|++|+..  ..+..+.+|.+.|.+++|+   +++|++|+.||+|+|||+..+...... .              
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i--------------  114 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-I--------------  114 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-c--------------
Confidence            6678999999854  3566788999999999998   458999999999999999864321000 0              


Q ss_pred             CCCCeEEEeeeccceeeeccCCeeEEEecCCCCE-EEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEE
Q 047728          201 KPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL-LYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT  278 (474)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~  278 (474)
                               ......+.+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+++| +|++
T Consensus       115 ---------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat  184 (568)
T PTZ00420        115 ---------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG  184 (568)
T ss_pred             ---------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence                     0011234569999999999998865 5789999999999999998877775 56789999999999 8888


Q ss_pred             eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE-----EEEcCCCCEEEEEcCCC----cEEEeecCcccccceeee
Q 047728          279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA-----LAISPDAAIVYCGSSDG----LVNFWERELNLSHGGVLR  349 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-----l~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~  349 (474)
                      ++.|+.|+|||++.+..      ...+..|.+.+..     ..|++++.+|++++.|+    .|++||++..........
T Consensus       185 ~s~D~~IrIwD~Rsg~~------i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~  258 (568)
T PTZ00420        185 TCVGKHMHIIDPRKQEI------ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS  258 (568)
T ss_pred             EecCCEEEEEECCCCcE------EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence            89999999999986542      3455667665433     34568889999877764    799999986433333322


Q ss_pred             e--cceeeE-EEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          350 G--HKLAIL-CLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       350 ~--~~~~v~-~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      .  +...++ .+.+ ++.++++|+.|+.|++|++..+....+..+. +..++.+++|.|...
T Consensus       259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI  319 (568)
T ss_pred             ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence            1  222221 2222 4889999999999999999877544343333 678899999999754

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1e-26  Score=225.73  Aligned_cols=244  Identities=15%  Similarity=0.138  Sum_probs=179.1

Q ss_pred             EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCC
Q 047728          164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDK  242 (474)
Q Consensus       164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg  242 (474)
                      |+.++.|++|+.......                                ..+.+|...|.+++|+|+ +.+|++|+.|+
T Consensus        50 GG~~gvI~L~~~~r~~~v--------------------------------~~L~gH~~~V~~lafsP~~~~lLASgS~Dg   97 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPV--------------------------------IKLKGHTSSILDLQFNPCFSEILASGSEDL   97 (568)
T ss_pred             CCceeEEEeeecCCCceE--------------------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            667788999987654221                                234569999999999996 78999999999


Q ss_pred             cEEEEEcCCcc--------eeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728          243 TFKVWRTSDYK--------CLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV  312 (474)
Q Consensus       243 ~i~iwd~~~~~--------~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  312 (474)
                      +|++||+.++.        ++..+.+|...|.+++|+|++  .+++++.|+.|++||++....      ...+ .+...|
T Consensus        98 tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~------~~~i-~~~~~V  170 (568)
T PTZ00420         98 TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR------AFQI-NMPKKL  170 (568)
T ss_pred             eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE------EEEE-ecCCcE
Confidence            99999997642        344678899999999999988  567899999999999986542      1122 245679


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--E-----EEEecCCEEEEEeCCC----cEEEEECCC
Q 047728          313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--L-----CLVTAGNLVFSGSADM----SICIWRRKE  381 (474)
Q Consensus       313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~-----~~~~~~~~l~sgs~dg----~i~iwd~~~  381 (474)
                      .+++|+|+|.+|++++.|+.|++||++++... ..+.+|...+  .     .+++++.+|++++.|+    +|+|||++.
T Consensus       171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            99999999999999999999999999987665 4456776542  1     2336788999888764    799999985


Q ss_pred             -CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728          382 -NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA  460 (474)
Q Consensus       382 -~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  460 (474)
                       .+......+..+.+.+......+++.        ++++|+.|+.|++|++..+...     .+... .+..+..+++|.
T Consensus       250 ~~~pl~~~~ld~~~~~L~p~~D~~tg~--------l~lsGkGD~tIr~~e~~~~~~~-----~l~~~-~s~~p~~g~~f~  315 (568)
T PTZ00420        250 TTSALVTMSIDNASAPLIPHYDESTGL--------IYLIGKGDGNCRYYQHSLGSIR-----KVNEY-KSCSPFRSFGFL  315 (568)
T ss_pred             CCCceEEEEecCCccceEEeeeCCCCC--------EEEEEECCCeEEEEEccCCcEE-----eeccc-ccCCCccceEEc
Confidence             44333333444444444444445566        8999999999999999765211     11121 145566777666


Q ss_pred             C
Q 047728          461 P  461 (474)
Q Consensus       461 p  461 (474)
                      |
T Consensus       316 P  316 (568)
T PTZ00420        316 P  316 (568)
T ss_pred             c
Confidence            6

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.9e-27  Score=197.11  Aligned_cols=264  Identities=18%  Similarity=0.301  Sum_probs=217.1

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ..+++|.+.|.+++|+  |.+|++|+.|+++++|+++.......                              -.+.+|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------~~~~gh   63 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------LVYRGH   63 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------hcccCC
Confidence            4567899999999998  88999999999999999987733211                              234569


Q ss_pred             cCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          220 FDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       220 ~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      .+.|-.++|+| ...+|++++.|.+|++||++.++++..+....+.+ -+.|+|+| ++++++.|..|...|.+....  
T Consensus        64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~--  140 (313)
T KOG1407|consen   64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI--  140 (313)
T ss_pred             CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce--
Confidence            99999999998 66899999999999999999999999887655554 56788888 999999999999999886543  


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCCcEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSIC  375 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg~i~  375 (474)
                           .........+..++|+-++.+++.....|+|.|.....- ...+.+..|...++|+.  |+|+++|+|+.|-.+.
T Consensus       141 -----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  141 -----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             -----eehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceee
Confidence                 233344556888999988888888888899999877644 34467889998887765  5799999999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN  455 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~  455 (474)
                      +||++..  +|+..+..+.-+|..+.|+.+++        +||+||+|..|-|=+++++....       .+ .+.++..
T Consensus       215 LWD~~EL--iC~R~isRldwpVRTlSFS~dg~--------~lASaSEDh~IDIA~vetGd~~~-------eI-~~~~~t~  276 (313)
T KOG1407|consen  215 LWDVDEL--ICERCISRLDWPVRTLSFSHDGR--------MLASASEDHFIDIAEVETGDRVW-------EI-PCEGPTF  276 (313)
T ss_pred             ccChhHh--hhheeeccccCceEEEEeccCcc--------eeeccCccceEEeEecccCCeEE-------Ee-eccCCce
Confidence            9999754  48889999999999999999999        99999999999999999984332       22 2556778


Q ss_pred             ccccCCC
Q 047728          456 SLPYAPS  462 (474)
Q Consensus       456 ~l~~~p~  462 (474)
                      .++|||.
T Consensus       277 tVAWHPk  283 (313)
T KOG1407|consen  277 TVAWHPK  283 (313)
T ss_pred             eEEecCC
Confidence            8888883

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=8.5e-29  Score=203.76  Aligned_cols=272  Identities=17%  Similarity=0.203  Sum_probs=233.6

Q ss_pred             ccccCccCEEEEEec-----CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          143 GFKSNSGLVKAIVIS-----NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ...+|+.+|..++|+     +-.|++++.||.-.+-+=+++..+                                ++|.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--------------------------------gtfe   56 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--------------------------------GTFE   56 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--------------------------------Eeee
Confidence            456899999999998     447899999998777666666543                                5678


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +|.++|++.+++.+....++++.|-+-++||.-+|..+.++ .|..-|.+++|+.|. .|++|+.+..+||||++.... 
T Consensus        57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A-  134 (334)
T KOG0278|consen   57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA-  134 (334)
T ss_pred             ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-
Confidence            89999999999999889999999999999999999999888 588999999999998 999999999999999986654 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                          +.....+|.+.|..+.|....+.|++...|++|++||.+++.....+...+....+.++.+|++|.++. .+.|.+
T Consensus       135 ----pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~F  209 (334)
T KOG0278|consen  135 ----PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKF  209 (334)
T ss_pred             ----CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEE
Confidence                466778999999999999999999999999999999999999998888888888899999999887765 568999


Q ss_pred             EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728          377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS  456 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  456 (474)
                      ||..+...+  .... -...|.+..++|+..        ++++|++|..++.||..++.....      ...+|-++|-+
T Consensus       210 wdaksf~~l--Ks~k-~P~nV~SASL~P~k~--------~fVaGged~~~~kfDy~TgeEi~~------~nkgh~gpVhc  272 (334)
T KOG0278|consen  210 WDAKSFGLL--KSYK-MPCNVESASLHPKKE--------FFVAGGEDFKVYKFDYNTGEEIGS------YNKGHFGPVHC  272 (334)
T ss_pred             eccccccce--eecc-CccccccccccCCCc--------eEEecCcceEEEEEeccCCceeee------cccCCCCceEE
Confidence            999887633  2222 345689999999998        999999999999999999854432      25789999999


Q ss_pred             cccCCCCCcCCceeeccC
Q 047728          457 LPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       457 l~~~p~~s~Dg~~l~~~s  474 (474)
                      +    .|||||.+.+++|
T Consensus       273 V----rFSPdGE~yAsGS  286 (334)
T KOG0278|consen  273 V----RFSPDGELYASGS  286 (334)
T ss_pred             E----EECCCCceeeccC
Confidence            9    7888888888876

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.1e-27  Score=217.80  Aligned_cols=264  Identities=21%  Similarity=0.360  Sum_probs=219.5

Q ss_pred             CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCcccee
Q 047728          120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDF  195 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  195 (474)
                      .+.||+|.. ..|++|+..  +.......+...|+++.|+  |.+|++|..+|.|.|||....+.....           
T Consensus       188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-----------  255 (484)
T KOG0305|consen  188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-----------  255 (484)
T ss_pred             CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-----------
Confidence            557777764 469999843  2233333348899999998  889999999999999999877654322           


Q ss_pred             eeeecCCCCeEEEeeeccceeee-ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee-eeecCcceeEEEecCC
Q 047728          196 IKCSMKPSNYIEVRRHRNGLWIK-HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES-VIAHDDAVNSIVAGFD  273 (474)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~  273 (474)
                                           .+ |...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|
T Consensus       256 ---------------------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  256 ---------------------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             ---------------------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence                                 23 88999999998  67899999999999999998776655 8899999999999999


Q ss_pred             C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEE--cCCCcEEEeecCcccccceeee
Q 047728          274 G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCG--SSDGLVNFWERELNLSHGGVLR  349 (474)
Q Consensus       274 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~  349 (474)
                      + ++++|+.|+.+.|||.....      +...+..|...|.+++|+| ...+||+|  +.|++|++||..++..+..+..
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt  386 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT  386 (484)
T ss_pred             CCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence            9 99999999999999985433      4678889999999999999 67788886  4699999999999888877766


Q ss_pred             ecceeeEEEEecCCEEEE--EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEE
Q 047728          350 GHKLAILCLVTAGNLVFS--GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVK  427 (474)
Q Consensus       350 ~~~~~v~~~~~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~  427 (474)
                      +....-+.+++..+-|++  |..++.|.||+..+.+  .+..+.+|...|..++++||+.        .+++|+.|.+++
T Consensus       387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la~SPdg~--------~i~t~a~DETlr  456 (484)
T KOG0305|consen  387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLALSPDGE--------TIVTGAADETLR  456 (484)
T ss_pred             CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEEECCCCC--------EEEEecccCcEE
Confidence            666666667776655554  4467899999998866  5788999999999999999999        899999999999


Q ss_pred             EEEccCC
Q 047728          428 MWRVSEQ  434 (474)
Q Consensus       428 vw~~~~~  434 (474)
                      +|++-..
T Consensus       457 fw~~f~~  463 (484)
T KOG0305|consen  457 FWNLFDE  463 (484)
T ss_pred             eccccCC
Confidence            9999875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=215.60  Aligned_cols=286  Identities=18%  Similarity=0.261  Sum_probs=216.8

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ..+++|+..|.+++++  |-+|++|+.|.+|++||+.........       ++.                    +....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-------fr~--------------------l~P~E  213 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-------FRQ--------------------LQPCE  213 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-------hhc--------------------cCccc
Confidence            4567899999999998  779999999999999999876543211       111                    11125


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee------------eeecCcceeEEEecCCC--eEEEeeCCCcE
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES------------VIAHDDAVNSIVAGFDG--LVFTGSADGTV  285 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------------~~~~~~~v~~v~~~~~~--~l~~~~~dg~i  285 (474)
                      ...|+++.|++.+..|++.+.....+|+|-...+.+..            -++|...++|.+|+|+.  .+++++.||++
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            56899999999999999999999999999654443332            24788899999999998  89999999999


Q ss_pred             EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc--cceeeeecce----eeEEEE
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS--HGGVLRGHKL----AILCLV  359 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~----~v~~~~  359 (474)
                      |+||+.........+......+..-+++.++|+++++.||+|+.||.|.+|+......  ...+...|..    ..+.|+
T Consensus       294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence            9999987766555554555556677899999999999999999999999999754422  2233345544    456667


Q ss_pred             ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC--ccceEEEEEeeCCccccccceEEEEEecC------CCcEEEEEc
Q 047728          360 TAGNLVFSGSADMSICIWRRKENEHICLSMLTGH--SGPVKCLAVEKDDESLSREKRWILYSGSL------DKSVKMWRV  431 (474)
Q Consensus       360 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------Dg~i~vw~~  431 (474)
                      ++|++|++-+.|+++++||++..+.. +....+-  .-+-+.++|+|+.+        +|++|..      .|.+.+||-
T Consensus       374 ~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~~~~tdc~FSPd~k--------li~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  374 YDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTPFPGTDCCFSPDDK--------LILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             cccchhhhccCCCceeeeeccccccc-hhhhcCCCccCCCCccccCCCce--------EEEecccccCCCCCceEEEEec
Confidence            79999999999999999999876543 4444332  23568899999999        8998863      467899987


Q ss_pred             cCCCCCCCCCcccccccCCCCCCCccccCCCC------CcCCcee
Q 047728          432 SEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF------SSQGRIC  470 (474)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~------s~Dg~~l  470 (474)
                      .+-       ...+.+......|..+.|||..      +.||..-
T Consensus       445 ~t~-------d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~  482 (641)
T KOG0772|consen  445 MTL-------DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAH  482 (641)
T ss_pred             cce-------eeEEEecCCCceEEEEeecchhhheeeecCCCceE
Confidence            665       3444555557778888899943      5566543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.9e-25  Score=181.47  Aligned_cols=294  Identities=19%  Similarity=0.255  Sum_probs=226.2

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-------------c----cccccccCccCEEEEEec--C
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-------------R----EFSGFKSNSGLVKAIVIS--N  158 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-------------~----~~~~~~~h~~~V~~i~~~--~  158 (474)
                      .+.+..| .....|.+++|.  |.+.++|+..++.||-...             +    ..+.-+.|.+.|.|.+|+  +
T Consensus        23 f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g  101 (350)
T KOG0641|consen   23 FEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG  101 (350)
T ss_pred             eEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence            3444444 345678887776  8899999999999987311             0    123346789999999998  8


Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC----CCE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED----QNL  234 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~----~~~  234 (474)
                      +.|++|+.|.+|++..++...+.....                           ...+..|.+.|..++|-.+    +.+
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~---------------------------dle~nmhdgtirdl~fld~~~s~~~i  154 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGH---------------------------DLEFNMHDGTIRDLAFLDDPESGGAI  154 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCc---------------------------ceeeeecCCceeeeEEecCCCcCceE
Confidence            899999999999998877654432111                           1134459999999999753    456


Q ss_pred             EEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeec---ccc
Q 047728          235 LYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK---QEC  310 (474)
Q Consensus       235 l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~  310 (474)
                      |++++ .|..|++-|..+++..+.+.+|.+-|.++---..-++++|+.|.+|++||++......  .+...+..   ..+
T Consensus       155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~--~l~~~~~~~gless  232 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVN--TLDNDFHDGGLESS  232 (350)
T ss_pred             EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceee--eccCcccCCCcccc
Confidence            67655 5778888899999999999999999988854333399999999999999998654311  11112222   236


Q ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCC--ceEE
Q 047728          311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKEN--EHIC  386 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~--~~~~  386 (474)
                      .|.++++.|.|++|++|-.|....+||++.+..+ +.+..|...+.|+  +|...|+++|+.|..|++-|+...  ....
T Consensus       233 avaav~vdpsgrll~sg~~dssc~lydirg~r~i-q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~  311 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI-QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELP  311 (350)
T ss_pred             eeEEEEECCCcceeeeccCCCceEEEEeeCCcee-eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCc
Confidence            7999999999999999999999999999988655 5667788777665  556789999999999999999753  2233


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +.....|...+..+.|+|..-        -+++.+.|.++.+|-+.
T Consensus       312 ~~vv~ehkdk~i~~rwh~~d~--------sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  312 IMVVAEHKDKAIQCRWHPQDF--------SFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEeccCceEEEEecCccc--------eeeeccCcceEEEeccC
Confidence            566778999999999999987        79999999999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=219.74  Aligned_cols=331  Identities=18%  Similarity=0.259  Sum_probs=256.3

Q ss_pred             CCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CC-EEEEE
Q 047728           92 NNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NE-KIFSG  164 (474)
Q Consensus        92 ~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~-~l~s~  164 (474)
                      ....+.+....+.++.++...|+++.++  =+.+|.|..+|+|.+++  .++.+..|+...+.|+.++|.  |. .+++|
T Consensus       184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~  263 (910)
T KOG1539|consen  184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG  263 (910)
T ss_pred             EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence            4456778889999999999999999988  56899999999999998  457788888667999999998  44 78888


Q ss_pred             eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcE
Q 047728          165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTF  244 (474)
Q Consensus       165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i  244 (474)
                      +..|.+.+||++..+.....                               ...|.+.|..+.|.+....+++++.|+.+
T Consensus       264 ~~~G~m~~wDLe~kkl~~v~-------------------------------~nah~~sv~~~~fl~~epVl~ta~~DnSl  312 (910)
T KOG1539|consen  264 RSNGDMAFWDLEKKKLINVT-------------------------------RNAHYGSVTGATFLPGEPVLVTAGADNSL  312 (910)
T ss_pred             cCCceEEEEEcCCCeeeeee-------------------------------eccccCCcccceecCCCceEeeccCCCce
Confidence            88899999999987654322                               23488999999999999999999999999


Q ss_pred             EEEEcCC--c--ceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCC------------------------
Q 047728          245 KVWRTSD--Y--KCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQG------------------------  294 (474)
Q Consensus       245 ~iwd~~~--~--~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~------------------------  294 (474)
                      ++|=..+  |  +.++.-.+|..+..++.|.. ++ .+.+++.|++++.+++....                        
T Consensus       313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~  392 (910)
T KOG1539|consen  313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK  392 (910)
T ss_pred             eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence            9885443  3  44555678999999998874 44 78888889888877543100                        


Q ss_pred             -----------------------------------------CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          295 -----------------------------------------KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       295 -----------------------------------------~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                                                               .+.-......+......+++++.++.|++.+.|+..|.|
T Consensus       393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I  472 (910)
T KOG1539|consen  393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI  472 (910)
T ss_pred             hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence                                                     000000001111233678999999999999999999999


Q ss_pred             EEeecCccccccee--eeecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE-----------------------
Q 047728          334 NFWERELNLSHGGV--LRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHIC-----------------------  386 (474)
Q Consensus       334 ~v~d~~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~-----------------------  386 (474)
                      .+|+++.+......  ...|..++..++.|  ++.+++++.+|.+.+||..+.....                       
T Consensus       473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~  552 (910)
T KOG1539|consen  473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA  552 (910)
T ss_pred             EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence            99999998665544  35789999888887  5679999999999999997654211                       


Q ss_pred             ----------------EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728          387 ----------------LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH  450 (474)
Q Consensus       387 ----------------~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~  450 (474)
                                      +..+.+|.+.|++++|+||++        +|++++.|++|++||+.++....       .+ ..
T Consensus       553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr--------WlisasmD~tIr~wDlpt~~lID-------~~-~v  616 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR--------WLISASMDSTIRTWDLPTGTLID-------GL-LV  616 (910)
T ss_pred             cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc--------EEEEeecCCcEEEEeccCcceee-------eE-ec
Confidence                            234578999999999999999        99999999999999999874321       11 12


Q ss_pred             CCCCCccccCCCCCcCCceeecc
Q 047728          451 GVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       451 ~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      ..++.++    +|||.|.+|++.
T Consensus       617 d~~~~sl----s~SPngD~LAT~  635 (910)
T KOG1539|consen  617 DSPCTSL----SFSPNGDFLATV  635 (910)
T ss_pred             CCcceee----EECCCCCEEEEE
Confidence            2334444    899999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.6e-26  Score=192.52  Aligned_cols=265  Identities=16%  Similarity=0.240  Sum_probs=208.0

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      +.+..-.+.|.++.|+  |+.+++++.|.++++||...++......                                .+
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------sk   55 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------SK   55 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--------------------------------cc
Confidence            3455567889999998  7899999999999999999887653221                                14


Q ss_pred             cCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          220 FDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      .-.|..++|......++.++.  |.+|+..++.+.+.++.+.+|...|+.+..+|-+ .+++++.|++|++||++.....
T Consensus        56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence            456778888776677776665  8999999999999999999999999999999988 9999999999999999954431


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc-cccceeee-----ecceeeEEEEecCCEEEEEeC
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLR-----GHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~l~sgs~  370 (474)
                            ..+  +...-..++|+|+|-++|++.....|++||++.- +.+...+.     ..+...+.++++|++|+.++.
T Consensus       136 ------g~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  136 ------GLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             ------eEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence                  111  1222345799999999999998889999999865 22222221     223455889999999999999


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccce---EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccc
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPL  447 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~  447 (474)
                      .+.+++.|.-.+..  +..+.++...-   ...+|.||++        ++++|+.||+|.+|+++++.       ....+
T Consensus       208 ~s~~~~lDAf~G~~--~~tfs~~~~~~~~~~~a~ftPds~--------Fvl~gs~dg~i~vw~~~tg~-------~v~~~  270 (311)
T KOG1446|consen  208 ASFIYLLDAFDGTV--KSTFSGYPNAGNLPLSATFTPDSK--------FVLSGSDDGTIHVWNLETGK-------KVAVL  270 (311)
T ss_pred             CCcEEEEEccCCcE--eeeEeeccCCCCcceeEEECCCCc--------EEEEecCCCcEEEEEcCCCc-------EeeEe
Confidence            99999999998883  45555544332   5778999999        99999999999999998884       44444


Q ss_pred             cC-CCCCCCccccCCCC
Q 047728          448 EG-HGVAPNSLPYAPSF  463 (474)
Q Consensus       448 ~~-~~~~v~~l~~~p~~  463 (474)
                      .+ +..++.++.|+|.+
T Consensus       271 ~~~~~~~~~~~~fnP~~  287 (311)
T KOG1446|consen  271 RGPNGGPVSCVRFNPRY  287 (311)
T ss_pred             cCCCCCCccccccCCce
Confidence            44 67788888788754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.1e-26  Score=192.90  Aligned_cols=304  Identities=19%  Similarity=0.263  Sum_probs=223.0

Q ss_pred             CCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----cccccc--cCccCEEEEEecCC---EEEE
Q 047728           95 DGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGFK--SNSGLVKAIVISNE---KIFS  163 (474)
Q Consensus        95 ~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~~--~h~~~V~~i~~~~~---~l~s  163 (474)
                      ..|.-.-.+..|++|.+.|++++|+  |++|+|++.|++|+||++..    +.+.++  -.-+.-+.+.|.++   .+++
T Consensus        71 ~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   71 PTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             CCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence            3444556677899999999999997  99999999999999998653    211111  12235677888744   6777


Q ss_pred             EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc
Q 047728          164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT  243 (474)
Q Consensus       164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~  243 (474)
                      .....++++|.+...+.-. .....                   +.......-..|.-.|..+-....+.+|++++.|..
T Consensus       151 ~~~g~~l~vyk~~K~~dG~-~~~~~-------------------v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~  210 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGS-GSHHF-------------------VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK  210 (420)
T ss_pred             EccCCEEEEEEeeecccCC-CCccc-------------------ccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence            7778889999887653210 00000                   000000112347778888888889999999999999


Q ss_pred             EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee--eeeeeeeecccccEEEEEEcCC
Q 047728          244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK--HFFSQTLLKQECAVTALAISPD  320 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~  320 (474)
                      |.+|+++ |+.+..+......-+..+.+|+| ++++++.---|++|.+-....+..  ......+.+|...|..++|+++
T Consensus       211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             EEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence            9999998 89999998877777888999999 888888888999999765544322  2234567899999999999999


Q ss_pred             CCEEEEEcCCCcEEEeecCcccccce---eee---------ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE
Q 047728          321 AAIVYCGSSDGLVNFWERELNLSHGG---VLR---------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLS  388 (474)
Q Consensus       321 ~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~---------~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  388 (474)
                      ...+++.+.||.+++||.+-.....+   +++         +...--+.++|+|+.|+... ...+++|..++++.. -.
T Consensus       290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~-~~  367 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDY-PE  367 (420)
T ss_pred             cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccc-hh
Confidence            99999999999999999754322111   111         11122478899999888765 557999999887633 22


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      .-..|...|.+++|+++++        +++|++ |..+++..
T Consensus       368 ~e~~h~~~Is~is~~~~g~--------~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  368 LEDIHSTTISSISYSSDGK--------YIATCG-DRYVRVIR  400 (420)
T ss_pred             HHHhhcCceeeEEecCCCc--------EEeeec-ceeeeeec
Confidence            3346899999999999999        898886 67888876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-27  Score=213.49  Aligned_cols=279  Identities=21%  Similarity=0.300  Sum_probs=213.8

Q ss_pred             EEEEeCCccccccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE
Q 047728          132 IRVWKNQREFSGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV  208 (474)
Q Consensus       132 v~vwd~~~~~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (474)
                      .+-|+........+ ....|.+++|++   ..+++.+.- .+.+|+..+.....                          
T Consensus        11 ~~~w~~~~~~~~~k-e~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k--------------------------   62 (487)
T KOG0310|consen   11 IRYWRQETFPPVHK-EHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRK--------------------------   62 (487)
T ss_pred             chhhhhhccccccc-ccCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhh--------------------------
Confidence            44565333222223 345799999984   344444433 48899887654432                          


Q ss_pred             eeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEE
Q 047728          209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVK  286 (474)
Q Consensus       209 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~  286 (474)
                            .+..-.+.|.+++|..||++|++|...|.|+|||+.+...+..+.+|+.+|..+.|+|++  .+++|+.|+.++
T Consensus        63 ------~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k  136 (487)
T KOG0310|consen   63 ------TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK  136 (487)
T ss_pred             ------hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence                  122256689999999999999999999999999988877889999999999999999987  889999999999


Q ss_pred             EEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcc-cccceeeeecceeeEEEEecCCE
Q 047728          287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTAGNL  364 (474)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~  364 (474)
                      +||+....      ....+.+|+..|.|.+|+| ++.++++|+.||.|++||.+.. .....+..++....+++-|.|..
T Consensus       137 ~~d~s~a~------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~  210 (487)
T KOG0310|consen  137 YWDLSTAY------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSL  210 (487)
T ss_pred             EEEcCCcE------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCE
Confidence            99997543      2557889999999999999 5668999999999999999877 44444445566666777788999


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccc
Q 047728          365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQ  444 (474)
Q Consensus       365 l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~  444 (474)
                      +++++ ...|++||+.++... +..+..|...|+|+++..++.        .|++|+.|+.|++|++.+-+       ..
T Consensus       211 iasAg-Gn~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~--------rLlS~sLD~~VKVfd~t~~K-------vv  273 (487)
T KOG0310|consen  211 IASAG-GNSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDST--------RLLSGSLDRHVKVFDTTNYK-------VV  273 (487)
T ss_pred             EEEcC-CCeEEEEEecCCcee-hhhhhcccceEEEEEeecCCc--------eEeecccccceEEEEccceE-------EE
Confidence            99887 458999999966543 445556999999999999987        89999999999999976642       22


Q ss_pred             ccccCCCCCCCccccCCCCCcCCceeec
Q 047728          445 HPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       445 ~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      +.+ .-.++|-++    +.|||++.++-
T Consensus       274 ~s~-~~~~pvLsi----avs~dd~t~vi  296 (487)
T KOG0310|consen  274 HSW-KYPGPVLSI----AVSPDDQTVVI  296 (487)
T ss_pred             Eee-ecccceeeE----EecCCCceEEE
Confidence            221 234566677    66777777664

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=219.82  Aligned_cols=269  Identities=20%  Similarity=0.378  Sum_probs=218.8

Q ss_pred             cCCEEEEeeCCCcEEEEeCCc--------cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728          119 AGDLLYTGSDSKNIRVWKNQR--------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGT  188 (474)
Q Consensus       119 ~~~~l~tgs~dg~v~vwd~~~--------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  188 (474)
                      .+++|+||+.||.|++|+...        ....++.|.+.|+.++..  ++.|++++.|-+|++|+...+.....     
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~-----  110 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM-----  110 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-----
Confidence            377999999999999997441        366788999999998876  66999999999999999987641111     


Q ss_pred             cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe-cCCCCEEEEEECCCcEEEEEcCCcc--eee--------e
Q 047728          189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM-SEDQNLLYSASWDKTFKVWRTSDYK--CLE--------S  257 (474)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~dg~i~iwd~~~~~--~~~--------~  257 (474)
                                               .++..|.+-|.|+++ .++..++|+|+-|+.|.+||++++.  .+.        .
T Consensus       111 -------------------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s  165 (735)
T KOG0308|consen  111 -------------------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS  165 (735)
T ss_pred             -------------------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence                                     123449999999999 7788999999999999999999772  222        2


Q ss_pred             ee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728          258 VI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF  335 (474)
Q Consensus       258 ~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v  335 (474)
                      +. ++...|++++.++.+ .+++|+..+.|++||.++..+      ...+.+|...|.++..+++|..++++++||+|++
T Consensus       166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl  239 (735)
T KOG0308|consen  166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL  239 (735)
T ss_pred             CCCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence            22 678899999999998 899999999999999997765      5667799999999999999999999999999999


Q ss_pred             eecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          336 WERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       336 ~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      ||+....++. .+..|...+.++..  +=..+++|+.||.|..=|+++...  ...+.....+|..+..+...+      
T Consensus       240 WdLgqQrCl~-T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlick~daPv~~l~~~~~~~------  310 (735)
T KOG0308|consen  240 WDLGQQRCLA-TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLICKEDAPVLKLHLHEHDN------  310 (735)
T ss_pred             eeccccceee-eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEeecCCCchhhhhhccccC------
Confidence            9999887774 46677777766654  567899999999999999988532  222333556788888876655      


Q ss_pred             eEEEEEecCCCcEEEEEccCC
Q 047728          414 RWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                        -+-+++.|+.|+-|...-.
T Consensus       311 --~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  311 --SVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             --CceeeeccccceecCCccc
Confidence              3577888999999987543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=216.92  Aligned_cols=332  Identities=15%  Similarity=0.136  Sum_probs=241.7

Q ss_pred             EEEEc--CCEEEEeeCCCcEEEEeCCcc-----ccccccCccCEEEEEec-------------CCEEEEEeCCCeEEEEe
Q 047728          115 SLAAA--GDLLYTGSDSKNIRVWKNQRE-----FSGFKSNSGLVKAIVIS-------------NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       115 ~~~~~--~~~l~tgs~dg~v~vwd~~~~-----~~~~~~h~~~V~~i~~~-------------~~~l~s~~~dg~i~vwd  174 (474)
                      ++.|+  .+.|..-..|..++|||+...     ...+.-|...|..+..-             ...++|++.|++||+|+
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~  408 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD  408 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence            34455  668888889999999996532     33455677777776542             34699999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEee-------eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR-------HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW  247 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw  247 (474)
                      ++...-.......  ....++.+........-.+..       .......+....+.+++++|++++|++|..-|+|+||
T Consensus       409 l~~ctnn~vyrRN--ils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  409 LAFCTNNQVYRRN--ILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             cccccccceeecc--cchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            9873221111110  111111111111111111111       1111223345579999999999999999999999999


Q ss_pred             EcCCcceeeeeeecCcceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC--
Q 047728          248 RTSDYKCLESVIAHDDAVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA--  321 (474)
Q Consensus       248 d~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--  321 (474)
                      |+...+.+..+.+|+..|.|+.++...    +|++++.|..|+|||....-     .+.+++.+|...|+++.|..+|  
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----chhhhhcccccceeEEEEeecCCc
Confidence            999999999999999999999998653    79999999999999986433     2678899999999999999877  


Q ss_pred             CEEEEEcCCCcEEEeecCcccccceeeeec------ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec---C
Q 047728          322 AIVYCGSSDGLVNFWERELNLSHGGVLRGH------KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT---G  392 (474)
Q Consensus       322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---~  392 (474)
                      ..+++++.|..|.+--.+....-..+.+.|      ...-+.+.|..+++++++.|..|+|||+.+++.  ...++   +
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq--~k~FKgs~~  639 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ--VKSFKGSRD  639 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce--eeeeccccc
Confidence            688889999887653332111111111111      122256667789999999999999999999984  34444   4


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      |.+....+...|.+.        ||++...|.++.++|+.++       ++...+.||+..|+.+    .|++|.+.|.+
T Consensus       640 ~eG~lIKv~lDPSgi--------Y~atScsdktl~~~Df~sg-------EcvA~m~GHsE~VTG~----kF~nDCkHlIS  700 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGI--------YLATSCSDKTLCFVDFVSG-------ECVAQMTGHSEAVTGV----KFLNDCKHLIS  700 (1080)
T ss_pred             CCCceEEEEECCCcc--------EEEEeecCCceEEEEeccc-------hhhhhhcCcchheeee----eecccchhhee
Confidence            677888999999998        9999999999999999998       7888899999999999    77888887766


Q ss_pred             cC
Q 047728          473 RS  474 (474)
Q Consensus       473 ~s  474 (474)
                      -|
T Consensus       701 vs  702 (1080)
T KOG1408|consen  701 VS  702 (1080)
T ss_pred             ec
Confidence            43

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8e-28  Score=208.04  Aligned_cols=271  Identities=14%  Similarity=0.259  Sum_probs=218.7

Q ss_pred             ccccccCccCEEEEEecCC---EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVISNE---KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      +..+.+|.+.|.|++-+++   .+++|+.||.|++||+.+.++..                                .+.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--------------------------------~f~  106 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--------------------------------TFK  106 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh--------------------------------eee
Confidence            3456789999999999854   58999999999999999877653                                345


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      .|.+.|..|++..  ..+++++.|.+|+.|-+.. ..+.++.+ ...+..+.-+..+ .+++++.  .|.|||.+...  
T Consensus       107 AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~--  178 (433)
T KOG0268|consen  107 AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN--  178 (433)
T ss_pred             cccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCC--
Confidence            5999999999976  6789999999999998765 46666644 4556666655544 6777664  58999986444  


Q ss_pred             eeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSIC  375 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~  375 (474)
                          +...+.-....|.++.|+|. ...|+++.+|+.|.+||+++...+..+.......-+||.|.+-.+++|++|..++
T Consensus       179 ----Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY  254 (433)
T KOG0268|consen  179 ----PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLY  254 (433)
T ss_pred             ----ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccce
Confidence                35556666778999999994 5677778899999999999999988888888888999999888899999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN  455 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~  455 (474)
                      .||++..+.. +....+|.++|.++.|+|.|+        -+++||.|.+|+||.+..+....++         |+.++.
T Consensus       255 ~~DmR~l~~p-~~v~~dhvsAV~dVdfsptG~--------EfvsgsyDksIRIf~~~~~~SRdiY---------htkRMq  316 (433)
T KOG0268|consen  255 TYDMRNLSRP-LNVHKDHVSAVMDVDFSPTGQ--------EFVSGSYDKSIRIFPVNHGHSRDIY---------HTKRMQ  316 (433)
T ss_pred             ehhhhhhccc-chhhcccceeEEEeccCCCcc--------hhccccccceEEEeecCCCcchhhh---------hHhhhh
Confidence            9999987654 778899999999999999999        7999999999999999887433221         333333


Q ss_pred             ccccCCCCCcCCceeeccC
Q 047728          456 SLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       456 ~l~~~p~~s~Dg~~l~~~s  474 (474)
                      .+ |+..||-|.+++.+||
T Consensus       317 ~V-~~Vk~S~Dskyi~SGS  334 (433)
T KOG0268|consen  317 HV-FCVKYSMDSKYIISGS  334 (433)
T ss_pred             ee-eEEEEeccccEEEecC
Confidence            33 4558999999999987

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=4.3e-26  Score=192.21  Aligned_cols=283  Identities=17%  Similarity=0.249  Sum_probs=218.1

Q ss_pred             eeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcc-----------------ccccccCccCEEEEEec---CCEEEE
Q 047728          107 VREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQRE-----------------FSGFKSNSGLVKAIVIS---NEKIFS  163 (474)
Q Consensus       107 ~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~-----------------~~~~~~h~~~V~~i~~~---~~~l~s  163 (474)
                      ..|.|.|+++..+   |+|+++|+.||.|.|||+++.                 ...-.+|.-.|..+.|-   ..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            4688999999987   999999999999999996521                 11124677888888875   668999


Q ss_pred             EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC---CCCEEEEEEC
Q 047728          164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE---DQNLLYSASW  240 (474)
Q Consensus       164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~  240 (474)
                      ++.|.+++|||..+.+....+.                                 -.+.|.+-+++|   ..-++++|..
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~---------------------------------me~~VYshamSp~a~sHcLiA~gtr  166 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK---------------------------------MEGKVYSHAMSPMAMSHCLIAAGTR  166 (397)
T ss_pred             ccccceEEEeecccceeeEEee---------------------------------cCceeehhhcChhhhcceEEEEecC
Confidence            9999999999999876654333                                 344566667777   2457788889


Q ss_pred             CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC---------ceeeeeeeeeeccc
Q 047728          241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK---------GTKHFFSQTLLKQE  309 (474)
Q Consensus       241 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~  309 (474)
                      |-.|++.|+.+|.+.+++.+|.+.|.++.|+|..  .|++|+.||.|++||++....         .......+....|.
T Consensus       167 ~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~  246 (397)
T KOG4283|consen  167 DVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY  246 (397)
T ss_pred             CCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc
Confidence            9999999999999999999999999999999998  899999999999999985311         11112233456788


Q ss_pred             ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--eccee-eEE--E-EecCCEEEEEeCCCcEEEEECCCCc
Q 047728          310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--GHKLA-ILC--L-VTAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~-v~~--~-~~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      +.|..++|..++.++++++.|..+++|+...+........  .|... -..  + +.+...++---.++.+.++++-.+.
T Consensus       247 gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs  326 (397)
T KOG4283|consen  247 GKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS  326 (397)
T ss_pred             ceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCce
Confidence            9999999999999999999999999999877643221110  11100 011  1 2233444444456899999998887


Q ss_pred             eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                        .+..+..|-..|.|.++-|+-+        ...+|..|+.|..|-..
T Consensus       327 --~ir~l~~h~k~i~c~~~~~~fq--------~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  327 --FVRRLSTHLKRINCAAYRPDFE--------QCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             --EEEeeecccceeeEEeecCchh--------hhhccccCCcccccccc
Confidence              4678888988999999999988        79999999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=197.51  Aligned_cols=284  Identities=18%  Similarity=0.282  Sum_probs=236.0

Q ss_pred             EEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728          122 LLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS  199 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  199 (474)
                      .+++.-.+++++.    +.+..+.+|.+.|..++..  ...+.+++.|.+.+||.++++.++.                 
T Consensus       126 rivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-----------------  184 (481)
T KOG0300|consen  126 RIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-----------------  184 (481)
T ss_pred             hheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-----------------
Confidence            3444444555433    4566788999999999887  4578899999999999999998863                 


Q ss_pred             cCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc------CC----------------------
Q 047728          200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT------SD----------------------  251 (474)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~------~~----------------------  251 (474)
                                     .|.+|.+.|++|.|++.+.++++++.|++-.||..      ..                      
T Consensus       185 ---------------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d  249 (481)
T KOG0300|consen  185 ---------------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD  249 (481)
T ss_pred             ---------------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence                           45679999999999999999999999999999962      10                      


Q ss_pred             ------------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728          252 ------------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS  318 (474)
Q Consensus       252 ------------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  318 (474)
                                  ..++..+.+|...|.+..|...+ .+++++.|.+..+||++++.      ....+.+|....+.++-+
T Consensus       250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge------~v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE------VVNILTGHDSELTHCSTH  323 (481)
T ss_pred             cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc------eeccccCcchhccccccC
Confidence                        01344677899999999998888 99999999999999999776      477889999999999999


Q ss_pred             CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728          319 PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV  397 (474)
Q Consensus       319 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v  397 (474)
                      |..+++++.+.|.+.++||.+........+.+|...+.+..+. +..+++|+.|.+|++||+++.+.. +.++. -.+++
T Consensus       324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp-lATIR-tdS~~  401 (481)
T KOG0300|consen  324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP-LATIR-TDSPA  401 (481)
T ss_pred             CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc-ceeee-cCCcc
Confidence            9999999999999999999997777778899999999998885 788999999999999999987653 55555 45789


Q ss_pred             EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728          398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA  460 (474)
Q Consensus       398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  460 (474)
                      +.++++..+.        +++.--++..|++||++......   .+...-++|...|.+.+|.
T Consensus       402 NRvavs~g~~--------iIAiPhDNRqvRlfDlnG~RlaR---lPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  402 NRVAVSKGHP--------IIAIPHDNRQVRLFDLNGNRLAR---LPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             ceeEeecCCc--------eEEeccCCceEEEEecCCCcccc---CCcccccccceeeeeeecc
Confidence            9999999888        88888889999999998764432   2333456899999999775

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=4e-26  Score=212.91  Aligned_cols=358  Identities=19%  Similarity=0.297  Sum_probs=262.5

Q ss_pred             cceeeeeeeeecCcEEEEEEc---C-C-EEEEeeCCCcEEEEeCC--c------------------------cc------
Q 047728           99 PNVLIGSLVREEGHIYSLAAA---G-D-LLYTGSDSKNIRVWKNQ--R------------------------EF------  141 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~---~-~-~l~tgs~dg~v~vwd~~--~------------------------~~------  141 (474)
                      ....+..|.||++-|.+++|.   + + +||++|+|..||||++.  .                        .+      
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            447888999999999999987   3 3 78999999999999511  0                        00      


Q ss_pred             -cccccCccCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcc--eeeeecccC-ccceeeeeecCCCCeE---------
Q 047728          142 -SGFKSNSGLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDAS--IHKRVGTLP-TFKDFIKCSMKPSNYI---------  206 (474)
Q Consensus       142 -~~~~~h~~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~---------  206 (474)
                       ..+.+|.+.|.++.|.+  ..|++++.|.++.+|.-+...-+  ...+++.+. ....+..+-+.+....         
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence             12459999999999994  47999999999999998876433  333444433 1122333333333321         


Q ss_pred             -EEee-------eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC----cceeeeeeecCcceeEEEecCCC
Q 047728          207 -EVRR-------HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD----YKCLESVIAHDDAVNSIVAGFDG  274 (474)
Q Consensus       207 -~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~  274 (474)
                       ..+.       .......||.+.|++++|.|.|.+|++++.|.+-|++---.    ...+..-+-|.-.++|+++-+..
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~  419 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED  419 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence             2222       11234468999999999999999999999999999986431    12233345688889999999844


Q ss_pred             -eEEEeeCCCcEEEEEccc-------------------------------------------CCC---------------
Q 047728          275 -LVFTGSADGTVKVWRREL-------------------------------------------QGK---------------  295 (474)
Q Consensus       275 -~l~~~~~dg~i~iwd~~~-------------------------------------------~~~---------------  295 (474)
                       .+++|.....+|+|+...                                           +..               
T Consensus       420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence             899999999999996430                                           000               


Q ss_pred             ------------ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccccceeeeecceee--E
Q 047728          296 ------------GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGVLRGHKLAI--L  356 (474)
Q Consensus       296 ------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~~v--~  356 (474)
                                  .........+.+|...|.+++.+|+++++++++...     .|++|+..+-... +.+.+|...|  +
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-QELEGHSLTVTRL  578 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-heecccceEEEEE
Confidence                        000011233568889999999999999999988653     5899998877655 3677898877  5


Q ss_pred             EEEecCCEEEEEeCCCcEEEEECCCCceE--EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          357 CLVTAGNLVFSGSADMSICIWRRKENEHI--CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       357 ~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .|+||+++|++.+.|.++.+|........  .....+.|+.-|.++.|+|++.        +|+|+|.|.+|+||.....
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~--------~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK--------YFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc--------eeEEecCCceEEEEeccCc
Confidence            67789999999999999999998543211  1334778999999999999999        8999999999999999876


Q ss_pred             CCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728          435 APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR  468 (474)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~  468 (474)
                      ....+   .......++..|+.++|+|.+-++..
T Consensus       651 ~d~~i---~~~a~~~~~~aVTAv~~~~~~~~e~~  681 (764)
T KOG1063|consen  651 RDKYI---SRFACLKFSLAVTAVAYLPVDHNEKG  681 (764)
T ss_pred             hhhhh---hhhchhccCCceeeEEeecccccccc
Confidence            32211   11144567889999999998877666

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.4e-25  Score=190.61  Aligned_cols=264  Identities=16%  Similarity=0.206  Sum_probs=205.4

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      +..|.++.|+  ++.|+++++||++++||.. ..+...-.|..++.+++|. ...+++|+.||.|+++|+.+++...   
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~---   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ---   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCccee---
Confidence            3457777776  6677778899999999955 3444555699999999998 5689999999999999999886532   


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV  265 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v  265 (474)
                                                    +..|..+|.||.+++....+++|++|++|++||.+.......+.. ...|
T Consensus        90 ------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkV  138 (323)
T KOG1036|consen   90 ------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKV  138 (323)
T ss_pred             ------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceE
Confidence                                          233999999999999888999999999999999998666666654 4488


Q ss_pred             eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---c
Q 047728          266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN---L  342 (474)
Q Consensus       266 ~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---~  342 (474)
                      .++.... +.|++|+.+..|.+||++......    ......-+-.++|+++-|++.-+++++-||.|.+=.++..   .
T Consensus       139 y~~~v~g-~~LvVg~~~r~v~iyDLRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  139 YCMDVSG-NRLVVGTSDRKVLIYDLRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             EEEeccC-CEEEEeecCceEEEEEcccccchh----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence            8888763 389999999999999999655421    2223334557899999998888999999999887433322   1


Q ss_pred             ccceeeeecc-----------eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728          343 SHGGVLRGHK-----------LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       343 ~~~~~~~~~~-----------~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      .....++.|.           ...++|+|-.+.|+||+.||.|.+||..+.+  .+..+......|..++|+.++.    
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK--rl~q~~~~~~SI~slsfs~dG~----  287 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK--RLKQLAKYETSISSLSFSMDGS----  287 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh--hhhhccCCCCceEEEEeccCCC----
Confidence            1222333332           3346677778899999999999999998877  3566777777899999999999    


Q ss_pred             cceEEEEEecC
Q 047728          412 EKRWILYSGSL  422 (474)
Q Consensus       412 ~~~~~l~s~s~  422 (474)
                          .||.++.
T Consensus       288 ----~LAia~s  294 (323)
T KOG1036|consen  288 ----LLAIASS  294 (323)
T ss_pred             ----eEEEEec
Confidence                8888864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=8e-26  Score=192.05  Aligned_cols=265  Identities=17%  Similarity=0.234  Sum_probs=202.7

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      -...|..+.|+  ++.|++++.||++++|++........                                 ..|..++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~---------------------------------~~~~~plL   58 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK---------------------------------FKHGAPLL   58 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh---------------------------------eecCCcee
Confidence            35679999998  56788888999999999998754322                                 23899999


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ  303 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  303 (474)
                      +++|.+ ...+++|+.||.|+.+|+.++.. ..+..|..+|.||...+.. .+++|+.|++|++||.+....       .
T Consensus        59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-------~  129 (323)
T KOG1036|consen   59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-------V  129 (323)
T ss_pred             eeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-------c
Confidence            999987 46899999999999999988765 4556799999999998755 999999999999999985221       1


Q ss_pred             eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee---ecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GHKLAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      ........|.++..  .++.|++|+.|..+.+||+++.....+...   ......+++-|++.-.++++.||.|.+=.++
T Consensus       130 ~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  130 GTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             cccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence            22223336777666  477899999999999999998755542211   2233445666788889999999999886665


Q ss_pred             CCc--eEEEEeecCCc---------cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728          381 ENE--HICLSMLTGHS---------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG  449 (474)
Q Consensus       381 ~~~--~~~~~~~~~h~---------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~  449 (474)
                      ..+  ......++.|.         -||++++|+|-..        .|+||+.||.|.+||+...       +....+..
T Consensus       208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~--------tfaTgGsDG~V~~Wd~~~r-------Krl~q~~~  272 (323)
T KOG1036|consen  208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG--------TFATGGSDGIVNIWDLFNR-------KRLKQLAK  272 (323)
T ss_pred             CchHHhhhceeEEeeecccCCceEEEEeceeEeccccc--------eEEecCCCceEEEccCcch-------hhhhhccC
Confidence            431  11234556664         3899999999977        8999999999999999887       34444555


Q ss_pred             CCCCCCccccCCCCCcCCceeeccC
Q 047728          450 HGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       450 ~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      -...|.++    +|+.||..|+.++
T Consensus       273 ~~~SI~sl----sfs~dG~~LAia~  293 (323)
T KOG1036|consen  273 YETSISSL----SFSMDGSLLAIAS  293 (323)
T ss_pred             CCCceEEE----EeccCCCeEEEEe
Confidence            56668888    8999999998653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.3e-26  Score=192.00  Aligned_cols=240  Identities=14%  Similarity=0.249  Sum_probs=190.9

Q ss_pred             ceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecC----CEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISN----EKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~----~~l~s~~~dg~i~vw  173 (474)
                      ...+..+..|.++|++++.++.++|+|+.|-+|+|||..  .++..+..|.+.|+++.|..    ..|++|+.||.|.+|
T Consensus        33 l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             eeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            344667888999999999999999999999999999965  46777889999999999983    279999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      +...-.+.                                ..+.+|...|+.++++|.+++-++.+.|+.+++||+-+|+
T Consensus       113 ~~~~W~~~--------------------------------~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  113 RVGSWELL--------------------------------KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             EcCCeEEe--------------------------------eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            98775433                                3455699999999999999999999999999999999888


Q ss_pred             eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      .-..++- ......+.|+|.| +++.+.. ..|-+|.+.....       .........+.++.|. ++..|++|..|+.
T Consensus       161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v-------~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~  230 (362)
T KOG0294|consen  161 VAFVLNL-KNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASV-------FREIENPKRILCATFL-DGSELLVGGDNEW  230 (362)
T ss_pred             cceeecc-CCcceeeEEcCCCCEEEEEec-cEEEEEecccHhH-------hhhhhccccceeeeec-CCceEEEecCCce
Confidence            7666543 2233459999999 5665554 4588887764321       1111122345566665 6778889999999


Q ss_pred             EEEeecCcccccceeeeecceeeEEEEe----cCCEEEEEeCCCcEEEEECCCC
Q 047728          333 VNFWERELNLSHGGVLRGHKLAILCLVT----AGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      |.+||.+.. .....+.+|...|-.+.+    .+.+|++++.||.|++||++..
T Consensus       231 i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  231 ISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEeccCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999999874 444678899999987774    4579999999999999999865

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.8e-27  Score=218.25  Aligned_cols=240  Identities=23%  Similarity=0.360  Sum_probs=200.2

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      +++|+||+.||.|++|++..........                          ....+..|.+.|++++...+++.|++
T Consensus        37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~~~~~tlIS   90 (735)
T KOG0308|consen   37 GRYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILCGNGKTLIS   90 (735)
T ss_pred             CceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhhcCCCceEE
Confidence            5689999999999999987654321111                          01233459999999999999999999


Q ss_pred             EECCCcEEEEEcCCc--ceeeeeeecCcceeEEEe-cCCC-eEEEeeCCCcEEEEEcccCCCc----eeeeeeeeee-cc
Q 047728          238 ASWDKTFKVWRTSDY--KCLESVIAHDDAVNSIVA-GFDG-LVFTGSADGTVKVWRRELQGKG----TKHFFSQTLL-KQ  308 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~v~~-~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~-~~  308 (474)
                      ++.|-+|++|+...+  -++.++..|.+.|.|+++ .++. .+++|+-|+.|.+||++.+...    ........+. ++
T Consensus        91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence            999999999999877  688899999999999999 5555 8999999999999999865320    0111122223 78


Q ss_pred             cccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728          309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHIC  386 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~  386 (474)
                      ...|.+++.++.+..|+.|+..+.+++||.++..... .+++|...|.++  ..+|..+++++.||+|++||+...+  |
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr--C  247 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR--C  247 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEecccccccee-eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc--e
Confidence            8899999999999999999999999999999988774 455998877554  5689999999999999999997666  8


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.++..|...|+++..+|+-.        .+++|+.||.|..=|+++.
T Consensus       248 l~T~~vH~e~VWaL~~~~sf~--------~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  248 LATYIVHKEGVWALQSSPSFT--------HVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeeEEeccCceEEEeeCCCcc--------eEEecCCCCcEEecccCCc
Confidence            899999999999999999888        8999999999999999884

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.4e-27  Score=192.19  Aligned_cols=240  Identities=21%  Similarity=0.292  Sum_probs=190.4

Q ss_pred             eeecCcEEEEE--EcCCEEEEeeCCCcEEEEeCC-----ccccccccCccCEEEEEec----CCEEEEEeCCCeEEEEec
Q 047728          107 VREEGHIYSLA--AAGDLLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWKV  175 (474)
Q Consensus       107 ~~h~~~i~~~~--~~~~~l~tgs~dg~v~vwd~~-----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd~  175 (474)
                      ..|++.|....  +.|+.|||++.|++|+|+...     +.+..+.+|.++|..++|.    |..|++++.||.|.||+-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            45778787755  459999999999999999733     4677899999999999996    789999999999999999


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCc-
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDY-  252 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~-  252 (474)
                      ++++-...                              ..+..|...|++++|.|  -|-.|++++.||.|.|.+.++. 
T Consensus        88 ~~g~w~k~------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g  137 (299)
T KOG1332|consen   88 ENGRWTKA------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG  137 (299)
T ss_pred             CCCchhhh------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence            88754322                              22345999999999999  4678999999999999988754 


Q ss_pred             --ceeeeeeecCcceeEEEecCC---C------------eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          253 --KCLESVIAHDDAVNSIVAGFD---G------------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       253 --~~~~~~~~~~~~v~~v~~~~~---~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                        ........|.-.|+++.|.|.   |            +|++|+.|..|+||+....    .......+.+|.+.|+.+
T Consensus       138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRDV  213 (299)
T KOG1332|consen  138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRDV  213 (299)
T ss_pred             CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhhh
Confidence              123345679999999999886   1            4999999999999998754    223455688999999999


Q ss_pred             EEcCCC----CEEEEEcCCCcEEEeecCccccc--ceeeeecc--eeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          316 AISPDA----AIVYCGSSDGLVNFWERELNLSH--GGVLRGHK--LAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       316 ~~~~~~----~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~--~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      +|.|.-    .+|++++.||++.||..+.....  ...+....  ..-.++++.|+.|+.++.|+.|.+|.-.
T Consensus       214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            999943    58999999999999987643222  22233323  3346667789999999999999999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.2e-27  Score=208.62  Aligned_cols=269  Identities=22%  Similarity=0.303  Sum_probs=212.7

Q ss_pred             cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ....+..|.+.|..+.|-  .+.|++|+.|..|++|++...+....                              .++.
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~------------------------------~tLa  216 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI------------------------------STLA  216 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh------------------------------hhhh
Confidence            345567899999999997  47999999999999999988763321                              3445


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +..+.|+++.|.++++++++++.|+.+++|++...+...++.+|.+.|+++.|.... .+++|+.|.+|++||+..... 
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-  295 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-  295 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-
Confidence            577889999999999999999999999999999999999999999999999998777 699999999999999985332 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                           .... -..+.+..|+.+  ...+++|..|+.|++||.+..........+.....+.+++++..|.+++.|.++.+
T Consensus       296 -----~kt~-l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~v  367 (459)
T KOG0288|consen  296 -----SKTV-LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKV  367 (459)
T ss_pred             -----eccc-cccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceee
Confidence                 1111 112234444444  56788899999999999998877766666666677888899999999999999999


Q ss_pred             EECCCCceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC--C
Q 047728          377 WRRKENEHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG--V  452 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~--~  452 (474)
                      .|+++.+......-.+  -....+.+.|+|++.        |+++||.||.|+||++.+++..       ..+....  .
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~--------YvaAGS~dgsv~iW~v~tgKlE-------~~l~~s~s~~  432 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS--------YVAAGSADGSVYIWSVFTGKLE-------KVLSLSTSNA  432 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCc--------eeeeccCCCcEEEEEccCceEE-------EEeccCCCCc
Confidence            9999887432222221  123489999999999        9999999999999999998433       3333222  2


Q ss_pred             CCCccccCCC
Q 047728          453 APNSLPYAPS  462 (474)
Q Consensus       453 ~v~~l~~~p~  462 (474)
                      .|++++|+|+
T Consensus       433 aI~s~~W~~s  442 (459)
T KOG0288|consen  433 AITSLSWNPS  442 (459)
T ss_pred             ceEEEEEcCC
Confidence            5999977775

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=5.1e-26  Score=210.34  Aligned_cols=277  Identities=16%  Similarity=0.226  Sum_probs=208.4

Q ss_pred             CCEEEEeeCCCcEEEEeCCc--------cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          120 GDLLYTGSDSKNIRVWKNQR--------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~--------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      ..+||.+.+||.|.++|..+        .+..+..|..+|..+.|.  ...|++++.|.++++||+.+......      
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------  137 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------  137 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------
Confidence            45899999999999998542        245677899999999998  45899999999999999998765421      


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcc---------------
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYK---------------  253 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~---------------  253 (474)
                                              ..+.+|+..|.+++|.+ +...|++|+.||.|.|||++-..               
T Consensus       138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~  193 (720)
T KOG0321|consen  138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH  193 (720)
T ss_pred             ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence                                    14677999999999999 56788999999999999985321               


Q ss_pred             ------------eeeeeeecCcc----eeEEEecCCCeEEEeeC-CCcEEEEEcccCCCceeeeeeee--eecc---ccc
Q 047728          254 ------------CLESVIAHDDA----VNSIVAGFDGLVFTGSA-DGTVKVWRRELQGKGTKHFFSQT--LLKQ---ECA  311 (474)
Q Consensus       254 ------------~~~~~~~~~~~----v~~v~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~--~~~~---~~~  311 (474)
                                  .+...+++...    |+.+.|-.+..|++++. |+.|+|||++.............  +..+   .-.
T Consensus       194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG  273 (720)
T ss_pred             cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence                        01111233333    44455544448888887 99999999986554322221111  1122   446


Q ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeecCccc-ccceeeeecce----eeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728          312 VTALAISPDAAIVYCGSSDGLVNFWERELNL-SHGGVLRGHKL----AILCLVTAGNLVFSGSADMSICIWRRKENEHIC  386 (474)
Q Consensus       312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~----~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~  386 (474)
                      +.++..+..|.+|++.+.|+.|++|++.... .+...+.++..    .-.+++|++.+|++|+.|...++|.+.+.+.. 
T Consensus       274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~-  352 (720)
T KOG0321|consen  274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP-  352 (720)
T ss_pred             eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC-
Confidence            8889999999999999999999999987542 22223333322    22567899999999999999999999887654 


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ...+.+|.-.|++++|.|..-.       -++++++|.+++||++..+
T Consensus       353 ~~~l~Ght~eVt~V~w~pS~~t-------~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  353 PALLLGHTREVTTVRWLPSATT-------PVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhhhCcceEEEEEeeccccCC-------CceeeccCcceEEEeccCc
Confidence            5678899999999999987653       4788899999999999765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.7e-26  Score=202.09  Aligned_cols=285  Identities=21%  Similarity=0.328  Sum_probs=218.9

Q ss_pred             CcEEEEeCC--ccccccccC-ccCEEE-EEecCCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728          130 KNIRVWKNQ--REFSGFKSN-SGLVKA-IVISNEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN  204 (474)
Q Consensus       130 g~v~vwd~~--~~~~~~~~h-~~~V~~-i~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (474)
                      .++.+||+.  .....+++. ...-.+ -...+.+++++. ....|.+|.+.........                    
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~--------------------   77 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY--------------------   77 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh--------------------
Confidence            458999955  334444433 111111 122356666665 3447899998876544311                    


Q ss_pred             eEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC
Q 047728          205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG  283 (474)
Q Consensus       205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg  283 (474)
                                  .--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|++|+.||
T Consensus        78 ------------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg  145 (476)
T KOG0646|consen   78 ------------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG  145 (476)
T ss_pred             ------------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence                        1145689999999999999999899999999999999999999999999999999999 999999999


Q ss_pred             cEEEEEcccC---CCceeeeeeeeeecccccEEEEEEcCC--CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728          284 TVKVWRRELQ---GKGTKHFFSQTLLKQECAVTALAISPD--AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL  358 (474)
Q Consensus       284 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~  358 (474)
                      .|.+|++...   .......+...+..|.-+|+.+...+.  ..+|++++.|.++++||+..+..+..+........+.+
T Consensus       146 ~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l  225 (476)
T KOG0646|consen  146 AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL  225 (476)
T ss_pred             cEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE
Confidence            9999986431   111133356778889999999998875  46899999999999999999988877777777778888


Q ss_pred             EecCCEEEEEeCCCcEEEEECCCCc--------------eEEEEeecCCcc--ceEEEEEeeCCccccccceEEEEEecC
Q 047728          359 VTAGNLVFSGSADMSICIWRRKENE--------------HICLSMLTGHSG--PVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       359 ~~~~~~l~sgs~dg~i~iwd~~~~~--------------~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      .|.+..+++|+.+|.|.+.++....              ...+..+.+|.+  +|+|++++-|+.        +|++|+.
T Consensus       226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt--------lLlSGd~  297 (476)
T KOG0646|consen  226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT--------LLLSGDE  297 (476)
T ss_pred             cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc--------EEEeeCC
Confidence            9999999999999999998875322              123556788988  999999999999        9999999


Q ss_pred             CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          423 DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       423 Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      ||.|+|||+...+       +.+++....++|+.+.+.|
T Consensus       298 dg~VcvWdi~S~Q-------~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQ-------CIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             CCCEEEEecchHH-------HHHHHhhhccccceeEeec
Confidence            9999999998763       3333333445566665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=3e-24  Score=193.48  Aligned_cols=313  Identities=17%  Similarity=0.260  Sum_probs=235.2

Q ss_pred             eecCcEEEEEEc----CCEEEEe--eCCCcEEEEeCCcc--ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecC
Q 047728          108 REEGHIYSLAAA----GDLLYTG--SDSKNIRVWKNQRE--FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       108 ~h~~~i~~~~~~----~~~l~tg--s~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~  176 (474)
                      .-+..|.|++|+    |.+|+.-  +.+..+.|||.++.  ....+.....|....|.   .+.+++++ .|.+..|+++
T Consensus       152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~  230 (626)
T KOG2106|consen  152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLR  230 (626)
T ss_pred             cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEcc
Confidence            445679999997    5566554  33556889997754  33455567778888898   44566655 5579999998


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee-ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK-HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL  255 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  255 (474)
                      .+.......+                             +.+ ...-|.|++|.++++ +++|..+|.|.||+..+.+..
T Consensus       231 ~~~l~k~~~~-----------------------------fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~  280 (626)
T KOG2106|consen  231 GGSLVKRQGI-----------------------------FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS  280 (626)
T ss_pred             CCceEEEeec-----------------------------cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence            8765432221                             111 225799999999875 779999999999999888888


Q ss_pred             eeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc----------------------------------eeeee
Q 047728          256 ESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG----------------------------------TKHFF  301 (474)
Q Consensus       256 ~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------------~~~~~  301 (474)
                      +....|.+.|.+++...+|.|++|+.|..|..||-...+..                                  ....+
T Consensus       281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f  360 (626)
T KOG2106|consen  281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF  360 (626)
T ss_pred             eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence            88889999999999999999999999999999983211100                                  00002


Q ss_pred             eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      .....+|......++.+|+.+.+++++.|+.+++|+  ..+...............|.|.| .++.|...|...+.|.++
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~  437 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET  437 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence            233456778899999999999999999999999999  33344445556667778888889 999999999999999998


Q ss_pred             CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      ...+  ..-. ...++++++|+|++.        +||.|+.|+.|+||.+.......   .......+  .+|+.|    
T Consensus       438 ~~lv--~~~~-d~~~ls~v~ysp~G~--------~lAvgs~d~~iyiy~Vs~~g~~y---~r~~k~~g--s~ithL----  497 (626)
T KOG2106|consen  438 QDLV--TIHT-DNEQLSVVRYSPDGA--------FLAVGSHDNHIYIYRVSANGRKY---SRVGKCSG--SPITHL----  497 (626)
T ss_pred             ceeE--EEEe-cCCceEEEEEcCCCC--------EEEEecCCCeEEEEEECCCCcEE---EEeeeecC--ceeEEe----
Confidence            6633  3333 388999999999999        99999999999999998764322   12222222  667777    


Q ss_pred             CCCcCCceeeccC
Q 047728          462 SFSSQGRICQKRS  474 (474)
Q Consensus       462 ~~s~Dg~~l~~~s  474 (474)
                      .||+|++++++.|
T Consensus       498 DwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  498 DWSSDSQFLVSNS  510 (626)
T ss_pred             eecCCCceEEecc
Confidence            8899999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.5e-25  Score=198.46  Aligned_cols=282  Identities=21%  Similarity=0.323  Sum_probs=222.6

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc-------------------cccc-ccCccCEEEEEec--C
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE-------------------FSGF-KSNSGLVKAIVIS--N  158 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~-------------------~~~~-~~h~~~V~~i~~~--~  158 (474)
                      +..+..|.-+|.|++..  +.++++++.+|+|.=|+....                   ...- +.|...|.+++.+  +
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            56778899999998865  779999999999999973210                   1111 3788899999998  7


Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA  238 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  238 (474)
                      .+|++|+.|..|.||+.++.+...                                .|.+|.+.|.+++|-.....|+++
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~--------------------------------~~~ghr~~V~~L~fr~gt~~lys~  262 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVK--------------------------------VFKGHRGAVSSLAFRKGTSELYSA  262 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhh--------------------------------cccccccceeeeeeecCccceeee
Confidence            799999999999999999887542                                356799999999999988999999


Q ss_pred             ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCe-EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEE
Q 047728          239 SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI  317 (474)
Q Consensus       239 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  317 (474)
                      +.|+.|++|++.....+.++.+|.+.|..|....-+. +-+|+.|+++++|++....       ...+.++.+.+.|++|
T Consensus       263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-------qlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-------QLIFRGGEGSIDCVAF  335 (479)
T ss_pred             ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-------eeeeeCCCCCeeeEEE
Confidence            9999999999999999999999999999998877774 4555699999999995332       3556778889999999


Q ss_pred             cCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-----------eee--EEEEecCCEEEEEeCCCcEEEEECCCC--
Q 047728          318 SPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-----------LAI--LCLVTAGNLVFSGSADMSICIWRRKEN--  382 (474)
Q Consensus       318 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----------~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~--  382 (474)
                      -. ...+++|+.+|.|.+|++.+.+.+......|.           ..+  +++.+..+++++|+.+|.|++|-+..+  
T Consensus       336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            84 45788899999999999987766554444332           134  444567899999999999999999877  


Q ss_pred             ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      ...++..+. -.+-|+.++|++++..       +++..+....+-=|-..
T Consensus       415 ~i~~l~~ls-~~GfVNsl~f~~sgk~-------ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  415 AINLLYSLS-LVGFVNSLAFSNSGKR-------IVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             ccceeeecc-cccEEEEEEEccCCCE-------EEEecccccccceeeEe
Confidence            222334444 6688999999999983       55555666666555443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=4.1e-25  Score=206.27  Aligned_cols=357  Identities=20%  Similarity=0.258  Sum_probs=242.5

Q ss_pred             eeeeeeeeecCcEEEEEEc--CC---EEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEecCCEEEEEeCCCeEE
Q 047728          101 VLIGSLVREEGHIYSLAAA--GD---LLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIR  171 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~---~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~  171 (474)
                      ..+..+.+|.++|+|+.+-  .+   ++++|+.||.|++|.+.    ..+..+.+|...+.|+.-........+.|+++.
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~  124 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVS  124 (764)
T ss_pred             eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEE
Confidence            5677899999999999864  33   89999999999999865    234556666555555543333333347999999


Q ss_pred             EEecCCCCcce--eeee----------cccCccceeeeeecCCCCeEEEee------eccceeeeccCCeeEEEecCCC-
Q 047728          172 VWKVSSKDASI--HKRV----------GTLPTFKDFIKCSMKPSNYIEVRR------HRNGLWIKHFDAISSLSMSEDQ-  232 (474)
Q Consensus       172 vwd~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~-  232 (474)
                      +|+.+..+...  ...+          ..++..+.++.........+.+..      .+...+.||.+.|.+|+|...+ 
T Consensus       125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~  204 (764)
T KOG1063|consen  125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG  204 (764)
T ss_pred             EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence            99996555111  1111          111211112111111112222211      2234678999999999998743 


Q ss_pred             --CEEEEEECCCcEEEEEcCCcc---------------------eee----------eeeecCcceeEEEecCCC-eEEE
Q 047728          233 --NLLYSASWDKTFKVWRTSDYK---------------------CLE----------SVIAHDDAVNSIVAGFDG-LVFT  278 (474)
Q Consensus       233 --~~l~s~s~dg~i~iwd~~~~~---------------------~~~----------~~~~~~~~v~~v~~~~~~-~l~~  278 (474)
                        -+|++++.|..|+||.+.-+.                     ...          .+.+|++.|+++.|+|.+ .|++
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS  284 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS  284 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence              478999999999999764221                     111          123899999999999999 9999


Q ss_pred             eeCCCcEEEEEcccC-----------CC-----------------------------------ceeeeeeeeeecccccE
Q 047728          279 GSADGTVKVWRRELQ-----------GK-----------------------------------GTKHFFSQTLLKQECAV  312 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~-----------~~-----------------------------------~~~~~~~~~~~~~~~~v  312 (474)
                      ++.|.++.+|.....           ..                                   ...........+|...|
T Consensus       285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V  364 (764)
T KOG1063|consen  285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV  364 (764)
T ss_pred             cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence            999999999965421           00                                   00111223345788899


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeecC-----------------------------------------------------
Q 047728          313 TALAISPDAAIVYCGSSDGLVNFWERE-----------------------------------------------------  339 (474)
Q Consensus       313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~-----------------------------------------------------  339 (474)
                      +.++|+|.|.+|++.+.|.+-++|-.-                                                     
T Consensus       365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l  444 (764)
T KOG1063|consen  365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL  444 (764)
T ss_pred             eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence            999999999999999999988885310                                                     


Q ss_pred             ------------------------------------ccc--------------------------------ccceeeeec
Q 047728          340 ------------------------------------LNL--------------------------------SHGGVLRGH  351 (474)
Q Consensus       340 ------------------------------------~~~--------------------------------~~~~~~~~~  351 (474)
                                                          ++.                                .....+.+|
T Consensus       445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH  524 (764)
T KOG1063|consen  445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH  524 (764)
T ss_pred             HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence                                                000                                001122356


Q ss_pred             ceeeEEE--EecCCEEEEEeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728          352 KLAILCL--VTAGNLVFSGSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK  424 (474)
Q Consensus       352 ~~~v~~~--~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg  424 (474)
                      ...+.|+  +++++++|+++..     ..|++|+..+..  ....+.+|.-.|+.++|+||++        +|++.+.|.
T Consensus       525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~--~~~~L~~HsLTVT~l~FSpdg~--------~LLsvsRDR  594 (764)
T KOG1063|consen  525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL--QVQELEGHSLTVTRLAFSPDGR--------YLLSVSRDR  594 (764)
T ss_pred             ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh--hhheecccceEEEEEEECCCCc--------EEEEeecCc
Confidence            6666554  5669999998754     468999998776  3568999999999999999999        999999999


Q ss_pred             cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          425 SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       425 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ++.+|...+......   ....++.|+.-|.+.    +|+||++..+++|
T Consensus       595 t~sl~~~~~~~~~e~---~fa~~k~HtRIIWdc----sW~pde~~FaTaS  637 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEF---RFACLKAHTRIIWDC----SWSPDEKYFATAS  637 (764)
T ss_pred             eEEeeeeecccchhh---hhccccccceEEEEc----ccCcccceeEEec
Confidence            999999866543322   233466776655544    8888888777765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.8e-26  Score=187.06  Aligned_cols=250  Identities=20%  Similarity=0.300  Sum_probs=199.0

Q ss_pred             cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      ...|.+.|..+..+  +.+|+|++.|++|+|+.++........                             ..+.+|.+
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----------------------------~~L~Gh~G   57 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----------------------------AELTGHSG   57 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----------------------------eEecCCCC
Confidence            35688888777665  999999999999999999887542111                             34677999


Q ss_pred             CeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCC
Q 047728          222 AISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       222 ~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~  294 (474)
                      +|+.++|..  -|.+|++++.||.|.||.-.+++  .......|...|++++|.|.+   .|++++.||.|.|.+.+..+
T Consensus        58 PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g  137 (299)
T KOG1332|consen   58 PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG  137 (299)
T ss_pred             CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence            999999976  89999999999999999988774  344556799999999999987   89999999999999988652


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCC---C-----------CEEEEEcCCCcEEEeecCccc-ccceeeeecceeeEEEE
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPD---A-----------AIVYCGSSDGLVNFWERELNL-SHGGVLRGHKLAILCLV  359 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~---~-----------~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~  359 (474)
                      .   .........|.-.|++++|.|.   |           +.|++|+.|..|+||+..... .....+.+|...+..+.
T Consensus       138 ~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA  214 (299)
T KOG1332|consen  138 G---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA  214 (299)
T ss_pred             C---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence            1   1123455678889999999995   4           569999999999999988753 33345889998885554


Q ss_pred             --ec----CCEEEEEeCCCcEEEEECCCC-ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          360 --TA----GNLVFSGSADMSICIWRRKEN-EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       360 --~~----~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                        |.    ..+|++++.||++.||..+.. +.-....+......+..+.|+..+.        +|+.++.|+.|.+|.-+
T Consensus       215 waP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn--------~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  215 WAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN--------ILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc--------EEEEecCCcEEEEEEeC
Confidence              43    458999999999999987632 1112334555678899999999999        99999999999999854


Q ss_pred             C
Q 047728          433 E  433 (474)
Q Consensus       433 ~  433 (474)
                      .
T Consensus       287 ~  287 (299)
T KOG1332|consen  287 V  287 (299)
T ss_pred             C
Confidence            3

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-25  Score=208.73  Aligned_cols=261  Identities=20%  Similarity=0.273  Sum_probs=211.3

Q ss_pred             EEecC-CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728          154 IVISN-EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ  232 (474)
Q Consensus       154 i~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  232 (474)
                      +.|+. +.|++|. ...|.+|+..++.......+                                +...|+++.|+++|
T Consensus       183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~--------------------------------~~~~vtSv~ws~~G  229 (484)
T KOG0305|consen  183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSF--------------------------------GEELVTSVKWSPDG  229 (484)
T ss_pred             hhcccCCeEEEEe-cceEEEEecCCCceEEeEec--------------------------------CCCceEEEEECCCC
Confidence            45553 3455544 45699999998874332211                                36789999999999


Q ss_pred             CEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728          233 NLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA  311 (474)
Q Consensus       233 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (474)
                      .+|++|..+|.|.|||..+.+.+..+.. |...|-+++|. ...+.+|+.|+.|..+|++.....     ...+.+|...
T Consensus       230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~-----~~~~~~H~qe  303 (484)
T KOG0305|consen  230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHV-----VSTLQGHRQE  303 (484)
T ss_pred             CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhh-----hhhhhcccce
Confidence            9999999999999999999999999998 99999999998 448999999999999999976542     2247889999


Q ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe---cCCEEEEEe--CCCcEEEEECCCCceEE
Q 047728          312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGS--ADMSICIWRRKENEHIC  386 (474)
Q Consensus       312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs--~dg~i~iwd~~~~~~~~  386 (474)
                      |..+.|++++.++++|+.|+.+.|||..... +...+..|...|.++.+   ...+||+|+  .|+.|++||..++..  
T Consensus       304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~--  380 (484)
T KOG0305|consen  304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR--  380 (484)
T ss_pred             eeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--
Confidence            9999999999999999999999999995544 44667789988877765   478999875  799999999998873  


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcC
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQ  466 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~D  466 (474)
                      +..+. -.+.|..|.|++..+.+      +..-|-.++.|.||++.+.       .....+.+|..+|..+    +.|||
T Consensus       381 i~~vd-tgsQVcsL~Wsk~~kEi------~sthG~s~n~i~lw~~ps~-------~~~~~l~gH~~RVl~l----a~SPd  442 (484)
T KOG0305|consen  381 IDSVD-TGSQVCSLIWSKKYKEL------LSTHGYSENQITLWKYPSM-------KLVAELLGHTSRVLYL----ALSPD  442 (484)
T ss_pred             ecccc-cCCceeeEEEcCCCCEE------EEecCCCCCcEEEEecccc-------ceeeeecCCcceeEEE----EECCC
Confidence            33333 45689999999998631      3333456789999999885       5677889999999888    88999


Q ss_pred             CceeeccC
Q 047728          467 GRICQKRS  474 (474)
Q Consensus       467 g~~l~~~s  474 (474)
                      |..+++++
T Consensus       443 g~~i~t~a  450 (484)
T KOG0305|consen  443 GETIVTGA  450 (484)
T ss_pred             CCEEEEec
Confidence            99998864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.6e-25  Score=198.37  Aligned_cols=237  Identities=16%  Similarity=0.253  Sum_probs=194.5

Q ss_pred             eccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCcc----------eeeeeeecCcceeEEEecCCC--eEEEeeCCCc
Q 047728          218 KHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYK----------CLESVIAHDDAVNSIVAGFDG--LVFTGSADGT  284 (474)
Q Consensus       218 ~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~  284 (474)
                      .|.+.|+.+.+.|. ..++++.+..+.|.|||..+..          +-..+.+|...-..+.|++..  .+++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            49999999999995 4667778889999999986422          223678899877889999876  9999999999


Q ss_pred             EEEEEcccCCCc-eeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCc-ccccceeeeecceeeEEEEe-
Q 047728          285 VKVWRRELQGKG-TKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWEREL-NLSHGGVLRGHKLAILCLVT-  360 (474)
Q Consensus       285 i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~v~~~~~-  360 (474)
                      |++||+...... ........+.+|...|..++|++ +...+++++.|+.+.|||+++ .........+|...+.|+.+ 
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            999999876553 33455677889999999999999 667889999999999999997 44455667789999988876 


Q ss_pred             --cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728          361 --AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL  438 (474)
Q Consensus       361 --~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~  438 (474)
                        ++..||+|+.|++|++||+++... ++..+.+|...|.+|.|+|....       +||+++.|+.+.|||+..-....
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~et-------vLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNET-------VLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCc-------eeEecccCCcEEEEecccccccc
Confidence              478999999999999999998776 47899999999999999999876       89999999999999997643221


Q ss_pred             C-------CCcccccccCCCCCCCccccCCC
Q 047728          439 V-------STTQQHPLEGHGVAPNSLPYAPS  462 (474)
Q Consensus       439 ~-------~~~~~~~~~~~~~~v~~l~~~p~  462 (474)
                      .       ....+..-.||...|+...|+|.
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPN  384 (422)
T ss_pred             ChhhhccCCcceeEEecCcccccccccCCCC
Confidence            1       11233344689999999999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=8.8e-26  Score=210.76  Aligned_cols=240  Identities=25%  Similarity=0.387  Sum_probs=203.5

Q ss_pred             cccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          140 EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ..+.+.+|..-|..+++. +..+++++.||++++|+-..++....                              ..+.+
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~------------------------------~~~~~   55 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET------------------------------HAFEG   55 (745)
T ss_pred             eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccc------------------------------eeccc
Confidence            345678999999998887 55799999999999999866654321                              12344


Q ss_pred             ccCCeeE-EEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc
Q 047728          219 HFDAISS-LSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       219 h~~~V~~-l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      |.+-|.+ +++-+ ++-.|++|+.|.+|.+|...+..++..+++|+..|.++....++.+++|+.|.++++|....    
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~----  131 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE----  131 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh----
Confidence            6666766 78876 55679999999999999999999999999999999999988888999999999999997653    


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEeCCCcEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGSADMSIC  375 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~  375 (474)
                          +...+.+|...|++++.-|++ .+++|+.|.+|++|.-.   ...+.+.+|...|..+.. ++..+++++.||.|+
T Consensus       132 ----l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir  203 (745)
T KOG0301|consen  132 ----LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIR  203 (745)
T ss_pred             ----hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCceEE
Confidence                234588999999999999988 88899999999999863   344678889999988876 566899999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +|++. ++  ++..+.+|+.-|.++....++.        .++++++|++++||+..
T Consensus       204 ~w~~~-ge--~l~~~~ghtn~vYsis~~~~~~--------~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  204 LWDLD-GE--VLLEMHGHTNFVYSISMALSDG--------LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEecc-Cc--eeeeeeccceEEEEEEecCCCC--------eEEEecCCceEEEeecC
Confidence            99994 44  5788999999999999777776        89999999999999987

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=7.1e-26  Score=211.75  Aligned_cols=288  Identities=19%  Similarity=0.289  Sum_probs=225.1

Q ss_pred             eeeeeeecCcEEEEEEc-------------CCEEEEeeCCCcEEEEeCCcc----c-----------c---------c--
Q 047728          103 IGSLVREEGHIYSLAAA-------------GDLLYTGSDSKNIRVWKNQRE----F-----------S---------G--  143 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~-------------~~~l~tgs~dg~v~vwd~~~~----~-----------~---------~--  143 (474)
                      ...+.-|...||.+.--             ..-++|++.|++||+|++...    +           .         .  
T Consensus       362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~  441 (1080)
T KOG1408|consen  362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH  441 (1080)
T ss_pred             eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence            34566678888876521             336899999999999984320    0           0         0  


Q ss_pred             -------------cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE
Q 047728          144 -------------FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV  208 (474)
Q Consensus       144 -------------~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (474)
                                   .-.....+.+++++  +++|++|..-|.++||++...+...                          
T Consensus       442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~--------------------------  495 (1080)
T KOG1408|consen  442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC--------------------------  495 (1080)
T ss_pred             hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh--------------------------
Confidence                         01123467888887  7799999999999999998765432                          


Q ss_pred             eeeccceeeeccCCeeEEEecC---CCCEEEEEECCCcEEEEEcC-CcceeeeeeecCcceeEEEecCCC---eEEEeeC
Q 047728          209 RRHRNGLWIKHFDAISSLSMSE---DQNLLYSASWDKTFKVWRTS-DYKCLESVIAHDDAVNSIVAGFDG---LVFTGSA  281 (474)
Q Consensus       209 ~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~  281 (474)
                            ....|..+|.|+.|+.   ..++|++++.|.-|+|||+. +..++.++.+|...|+++.|...|   .+++++.
T Consensus       496 ------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA  569 (1080)
T KOG1408|consen  496 ------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA  569 (1080)
T ss_pred             ------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence                  2234999999999986   45789999999999999985 456788999999999999998877   7999999


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--ecceee--EE
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--GHKLAI--LC  357 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~v--~~  357 (474)
                      |..|.+--.+. ......+...+.......+..+++.|..+++++++.|..|+|||++.++....+..  +|.+..  +.
T Consensus       570 DksimFr~~qk-~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~  648 (1080)
T KOG1408|consen  570 DKSIMFRVNQK-ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI  648 (1080)
T ss_pred             chhhheehhcc-ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE
Confidence            98876433221 11122222233333456789999999999999999999999999999877654433  343444  45


Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          358 LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       358 ~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.|.|.||++...|.++.++|..+++  |+..+.+|...|+.+.|.+|-+        .|++.+.||.|.||.+..
T Consensus       649 lDPSgiY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCk--------HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  649 LDPSGIYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCK--------HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ECCCccEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccch--------hheeecCCceEEEEECch
Confidence            56789999999999999999999999  8899999999999999999999        899999999999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.2e-25  Score=202.37  Aligned_cols=275  Identities=18%  Similarity=0.306  Sum_probs=216.9

Q ss_pred             eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccc-----cccc--cCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREF-----SGFK--SNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~-----~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      ...|-.-|.++..+  .++++||+. |.|+|||+.+..     ..+.  .....|.++...  ++.|++|+.-.++.|||
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            33566667777766  678999985 679999965432     1121  123455555554  78999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +.........+..                              ...-.+.+++.+||.+..+++..||.|.|||+.+...
T Consensus       494 LAapTprikaelt------------------------------ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  494 LAAPTPRIKAELT------------------------------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             ccCCCcchhhhcC------------------------------CcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence            9876543322211                              1334577899999999999999999999999999999


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      ++.|.+|.+.+.||.+++|| .|.+|+-|.+||.||++...+.       ......+.|.++..+|++.+|++|-.++.+
T Consensus       544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-------qqhdF~SQIfSLg~cP~~dWlavGMens~v  616 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-------QQHDFSSQIFSLGYCPTGDWLAVGMENSNV  616 (705)
T ss_pred             eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-------hhhhhhhhheecccCCCccceeeecccCcE
Confidence            99999999999999999999 9999999999999999976542       122335679999999999999999999999


Q ss_pred             EEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728          334 NFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      .+........  ..+.-|...|+++  ++.|+++++.+.|+.+..|..--+..  ++..+ ..+.|.++.++.|++    
T Consensus       617 evlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--iFqsk-E~SsVlsCDIS~ddk----  687 (705)
T KOG0639|consen  617 EVLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSK-ESSSVLSCDISFDDK----  687 (705)
T ss_pred             EEEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCccccc--eeecc-ccCcceeeeeccCce----
Confidence            8887765544  3455677777655  45799999999999999999877763  34443 457899999999999    


Q ss_pred             cceEEEEEecCCCcEEEEEc
Q 047728          412 EKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw~~  431 (474)
                          +++||+.|....||.+
T Consensus       688 ----yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  688 ----YIVTGSGDKKATVYEV  703 (705)
T ss_pred             ----EEEecCCCcceEEEEE
Confidence                9999999999999876

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3.8e-25  Score=195.79  Aligned_cols=271  Identities=19%  Similarity=0.260  Sum_probs=218.7

Q ss_pred             cCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728          149 GLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL  226 (474)
Q Consensus       149 ~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  226 (474)
                      ..++++...+  +.+++|+.|..+.++|...++..                                .++.||...|+.+
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--------------------------------~~~~Gh~kki~~v  267 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--------------------------------ATLKGHTKKITSV  267 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhh--------------------------------hhccCcceEEEEE
Confidence            3567777764  79999999999999999888764                                3567899999999


Q ss_pred             EecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728          227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL  305 (474)
Q Consensus       227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (474)
                      .++++...+++++.|..|+||......+......|..+|+.+..+|.| +|++++.|++..+.|++.+....    ....
T Consensus       268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt----~vs~  343 (506)
T KOG0289|consen  268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLT----VVSD  343 (506)
T ss_pred             EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEE----EEee
Confidence            999999999999999999999998888888889999999999999999 99999999999999998765411    1111


Q ss_pred             ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q 047728          306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       306 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ....-.+++++|+|||.+|.+|..|+.|++||+..+... ..+.+|.++|..+++  +|-+|+++++|+.|++||++..+
T Consensus       344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~-a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV-AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc-ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            134456999999999999999999999999999988744 566789999977776  68899999999999999999776


Q ss_pred             eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCC
Q 047728          384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF  463 (474)
Q Consensus       384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~  463 (474)
                      ......+... .+|.++.|.+.|.        +|+.++.|=.|++++-.+.  .+   .+...+..|.+..+.+    .|
T Consensus       423 n~kt~~l~~~-~~v~s~~fD~SGt--------~L~~~g~~l~Vy~~~k~~k--~W---~~~~~~~~~sg~st~v----~F  484 (506)
T KOG0289|consen  423 NFKTIQLDEK-KEVNSLSFDQSGT--------YLGIAGSDLQVYICKKKTK--SW---TEIKELADHSGLSTGV----RF  484 (506)
T ss_pred             ccceeecccc-ccceeEEEcCCCC--------eEEeecceeEEEEEecccc--cc---eeeehhhhccccccee----ee
Confidence            4433344333 3799999999999        8999977755555543332  22   4455566677667777    78


Q ss_pred             CcCCceeeccC
Q 047728          464 SSQGRICQKRS  474 (474)
Q Consensus       464 s~Dg~~l~~~s  474 (474)
                      ..+.++|+++|
T Consensus       485 g~~aq~l~s~s  495 (506)
T KOG0289|consen  485 GEHAQYLASTS  495 (506)
T ss_pred             cccceEEeecc
Confidence            88888888765

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.5e-24  Score=184.04  Aligned_cols=253  Identities=16%  Similarity=0.260  Sum_probs=192.5

Q ss_pred             ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728          145 KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA  222 (474)
Q Consensus       145 ~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  222 (474)
                      .+|.+.|.++.|+  |+++++|+.|++|+|||.+.........                            ..|+.|.+.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------------------s~Wrah~~S   61 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------------------SSWRAHDGS   61 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------------------eeEEecCCc
Confidence            4688899999998  9999999999999999986654433221                            356779999


Q ss_pred             eeEEEecC--CCCEEEEEECCCcEEEEEcCC---------cceeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEE
Q 047728          223 ISSLSMSE--DQNLLYSASWDKTFKVWRTSD---------YKCLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVW  288 (474)
Q Consensus       223 V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iw  288 (474)
                      |..+.|.+  -|+.+++++.|+++.||.-..         -....++......|+++.|.|..   ++++++.||.||||
T Consensus        62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY  141 (361)
T KOG2445|consen   62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY  141 (361)
T ss_pred             EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence            99999976  689999999999999997521         12344566677899999999975   89999999999999


Q ss_pred             EcccCCCceeeeeeeee-------ecccccEEEEEEcC---CCCEEEEEcCC-----CcEEEeecCccc---ccceeeee
Q 047728          289 RRELQGKGTKHFFSQTL-------LKQECAVTALAISP---DAAIVYCGSSD-----GLVNFWERELNL---SHGGVLRG  350 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~---~~~~l~~~~~d-----g~i~v~d~~~~~---~~~~~~~~  350 (474)
                      +...........+...+       ..+..+..|+.|+|   ...+|++|+.+     +.++||......   .....+.+
T Consensus       142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d  221 (361)
T KOG2445|consen  142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD  221 (361)
T ss_pred             ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence            87654433332222222       24667889999998   45678888776     478888765432   22234558


Q ss_pred             cceeeEEEEe--c----CCEEEEEeCCCcEEEEECCCCc------------------eEEEEeecCCccceEEEEEeeCC
Q 047728          351 HKLAILCLVT--A----GNLVFSGSADMSICIWRRKENE------------------HICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       351 ~~~~v~~~~~--~----~~~l~sgs~dg~i~iwd~~~~~------------------~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      |..+|..+++  +    -.+||+++.|| |+||.+....                  ...+..+.+|.+.|..+.|+-.|
T Consensus       222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence            8888866655  3    35899999999 9999987311                  22356688999999999999999


Q ss_pred             ccccccceEEEEEecCCCcEEEEEccCC
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .        +|++.|.||.||+|...-.
T Consensus       301 t--------iLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  301 T--------ILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             e--------EEeecCCCceeeehhhhhh
Confidence            8        9999999999999986543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=2.9e-24  Score=193.61  Aligned_cols=323  Identities=21%  Similarity=0.288  Sum_probs=231.6

Q ss_pred             CcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728          111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRV  186 (474)
Q Consensus       111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  186 (474)
                      ..|.|+.|. +.-++||.++|+|.||+.+  +..+....|.+.|.+++.- +..|++|+.|..|..||-+-. .   .+.
T Consensus       247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~-k---~r~  322 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYR-K---LRE  322 (626)
T ss_pred             eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccc-c---ccc
Confidence            569999998 5578999999999999844  3344444899999999987 668999999999999992221 1   111


Q ss_pred             cccCccceeeeeecCCCCeEEEeeec------------cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVRRHR------------NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      .++|.....+........-+.+-..+            ..+..+|.+..+.++.+|+..++++++.|+.+++|+  ..++
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~  400 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL  400 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence            22232222222222111112222222            233467999999999999999999999999999999  4454


Q ss_pred             eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEE
Q 047728          255 LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN  334 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  334 (474)
                      +.+.. -..++.|+.|+|.|.++.|...|...+.|.++...       ........++++++|+|+|.+||+|+.|+.|+
T Consensus       401 ~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l-------v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy  472 (626)
T KOG2106|consen  401 EWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL-------VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY  472 (626)
T ss_pred             eEEEE-ecCceeEeeccCcceEEEeeccceEEEEeccccee-------EEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence            44443 46788999999999999999999999999886432       23333388999999999999999999999999


Q ss_pred             EeecCcccccceee-eecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceE------------EE---E-eecCCcc
Q 047728          335 FWERELNLSHGGVL-RGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHI------------CL---S-MLTGHSG  395 (474)
Q Consensus       335 v~d~~~~~~~~~~~-~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~------------~~---~-~~~~h~~  395 (474)
                      +|-+.......... +.+..++  +.++.|+++|.+-+.|-.|..|....-...            |.   . ....|..
T Consensus       473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t  552 (626)
T KOG2106|consen  473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT  552 (626)
T ss_pred             EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence            99886653332222 2222444  566778999999999999999944322110            00   0 0123444


Q ss_pred             ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728          396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY  459 (474)
Q Consensus       396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  459 (474)
                      .|..++-+....        ++++|.+.|.|++|...-.++.    ...+...+|+..|++++|
T Consensus       553 ~i~a~~rs~~~~--------~lA~gdd~g~v~lf~yPc~s~r----A~~he~~ghs~~vt~V~F  604 (626)
T KOG2106|consen  553 DINAVARSHCEK--------LLASGDDFGKVHLFSYPCSSPR----APSHEYGGHSSHVTNVAF  604 (626)
T ss_pred             hHHHhhhhhhhh--------hhhccccCceEEEEccccCCCc----ccceeeccccceeEEEEE
Confidence            566666666666        8999999999999997654433    567888999999999943

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.9e-25  Score=217.80  Aligned_cols=280  Identities=20%  Similarity=0.259  Sum_probs=207.6

Q ss_pred             CccCEEEEEec--CCEEEEEe--CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728          147 NSGLVKAIVIS--NEKIFSGH--QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA  222 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  222 (474)
                      +...|.+|..+  +..++||+  .||.++||+.+.-.........                    ...........|.+.
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~--------------------~l~k~l~~m~~h~~s   71 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE--------------------NLPKHLCTMDDHDGS   71 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc--------------------ccchhheeeccccCc
Confidence            45568888887  56899999  9999999997653211000000                    011122344569999


Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCC------------------cceeeeeeecCcceeEEEecCCC-eEEEeeCCC
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSD------------------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG  283 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg  283 (474)
                      |+|+.|++||++||+|++|+.|.||+...                  .+++..+.+|...|..++|+|++ ++++++.|+
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn  151 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN  151 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence            99999999999999999999999998762                  13667788999999999999999 999999999


Q ss_pred             cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec--------ceee
Q 047728          284 TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH--------KLAI  355 (474)
Q Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~~v  355 (474)
                      +|.|||.++..      ....+.+|.+.|..+.|+|-|++|++-+.|++|++|....-... ..+..+        ...-
T Consensus       152 sViiwn~~tF~------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~-k~It~pf~~~~~~T~f~R  224 (942)
T KOG0973|consen  152 SVIIWNAKTFE------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE-KSITKPFEESPLTTFFLR  224 (942)
T ss_pred             eEEEEccccce------eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee-EeeccchhhCCCcceeee
Confidence            99999987663      57888999999999999999999999999999999996553222 222211        1233


Q ss_pred             EEEEecCCEEEEEeC----CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc------cc-cc-ce-EEEEEecC
Q 047728          356 LCLVTAGNLVFSGSA----DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES------LS-RE-KR-WILYSGSL  422 (474)
Q Consensus       356 ~~~~~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~------~~-~~-~~-~~l~s~s~  422 (474)
                      ++++|||++|++...    -.++.|.+..+.+  .-..+-+|.+++.+++|+|.--.      .. +. .. .++|+|+.
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            778899999998753    3578888886655  56688999999999999984210      00 01 11 37999999


Q ss_pred             CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          423 DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       423 Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      |++|.||......|...    .+.+  -...|..++|+|
T Consensus       303 DrSlSVW~T~~~RPl~v----i~~l--f~~SI~DmsWsp  335 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLFV----IHNL--FNKSIVDMSWSP  335 (942)
T ss_pred             CccEEEEecCCCCchhh----hhhh--hcCceeeeeEcC
Confidence            99999999966544322    1222  344688885554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.1e-25  Score=202.47  Aligned_cols=273  Identities=18%  Similarity=0.243  Sum_probs=215.4

Q ss_pred             ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728          145 KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA  222 (474)
Q Consensus       145 ~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  222 (474)
                      ..|...|.++.++  .++++||+.. .|+|||+.......  .+..+.-                         .....-
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~--PvsqLdc-------------------------l~rdny  467 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKS--PVSQLDC-------------------------LNRDNY  467 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCC--ccccccc-------------------------cCcccc
Confidence            3588889999998  5688888865 59999997652211  1111100                         113456


Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCccee--eeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL--ESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      |.++.+.||++.|++|+.-.+|.|||+......  ..+....-..++++.+||. ..+++..||.|.|||++.+.     
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----  542 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----  542 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----
Confidence            889999999999999999999999999765432  3333334567889999998 88999999999999998654     


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                       ....+.+|...+.||.++++|..|.+|+-|.+|+.||++.+..+.+.........+..+|.+.+|+.|-+++.+.|-..
T Consensus       543 -~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  543 -LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             -eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence             4788999999999999999999999999999999999998877655444444444556788999999999999999988


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY  459 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  459 (474)
                      ...+   ...+.-|.+.|.++.|.+-|+        ++++.+.|..+..|...-+......        .....|.++  
T Consensus       622 skp~---kyqlhlheScVLSlKFa~cGk--------wfvStGkDnlLnawrtPyGasiFqs--------kE~SsVlsC--  680 (705)
T KOG0639|consen  622 SKPE---KYQLHLHESCVLSLKFAYCGK--------WFVSTGKDNLLNAWRTPYGASIFQS--------KESSSVLSC--  680 (705)
T ss_pred             CCcc---ceeecccccEEEEEEecccCc--------eeeecCchhhhhhccCccccceeec--------cccCcceee--
Confidence            7665   456778999999999999999        9999999999999999887543221        123345555  


Q ss_pred             CCCCCcCCceeeccC
Q 047728          460 APSFSSQGRICQKRS  474 (474)
Q Consensus       460 ~p~~s~Dg~~l~~~s  474 (474)
                        ..|.|.+++|++|
T Consensus       681 --DIS~ddkyIVTGS  693 (705)
T KOG0639|consen  681 --DISFDDKYIVTGS  693 (705)
T ss_pred             --eeccCceEEEecC
Confidence              7899999999987

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.8e-26  Score=213.18  Aligned_cols=242  Identities=17%  Similarity=0.244  Sum_probs=194.8

Q ss_pred             EEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728          151 VKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS  227 (474)
Q Consensus       151 V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  227 (474)
                      +..|.|.   .++|+|++..|.|.+||+......  .                           ....|..|+..|+++.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn--k---------------------------~l~~f~EH~Rs~~~ld  140 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN--K---------------------------LLTVFNEHERSANKLD  140 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccc--h---------------------------hhhHhhhhccceeeee
Confidence            3445555   679999999999999999873110  0                           0124556999999999


Q ss_pred             ecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728          228 MSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQT  304 (474)
Q Consensus       228 ~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (474)
                      |++ ...+|++|+.||+|++||++..+...++.+....|+++.|+|..  .++++...|.+++||+|...+     ....
T Consensus       141 fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k  215 (839)
T KOG0269|consen  141 FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKK  215 (839)
T ss_pred             eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-----HHHH
Confidence            999 56789999999999999999999999998889999999999976  899999999999999997765     5677


Q ss_pred             eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEec-CCEEEEEe--CCCcEEEEEC
Q 047728          305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA-GNLVFSGS--ADMSICIWRR  379 (474)
Q Consensus       305 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~-~~~l~sgs--~dg~i~iwd~  379 (474)
                      +..|.++|.|+.|+|++.+||+|+.|+.|+|||....+...........++  +.+.|. ...|++++  .|-.|+|||+
T Consensus       216 ~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv  295 (839)
T KOG0269|consen  216 LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV  295 (839)
T ss_pred             hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence            889999999999999999999999999999999986644333322233333  555565 45667666  5789999999


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +..- ++..++..|...++.++|......       .|.+++.||+|..-.+.+.
T Consensus       296 rRPY-IP~~t~~eH~~~vt~i~W~~~d~~-------~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  296 RRPY-IPYATFLEHTDSVTGIAWDSGDRI-------NLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cccc-ccceeeeccCccccceeccCCCce-------eeEeecCccHHHHhhhhcc
Confidence            8664 347788999999999999874433       8999999999987776654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.8e-24  Score=205.26  Aligned_cols=262  Identities=18%  Similarity=0.227  Sum_probs=208.0

Q ss_pred             eecCcEEEEEE--cCCEEEEeeCCCcEEEEeCCc---cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcce
Q 047728          108 REEGHIYSLAA--AGDLLYTGSDSKNIRVWKNQR---EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       108 ~h~~~i~~~~~--~~~~l~tgs~dg~v~vwd~~~---~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~  182 (474)
                      .|++.-+.+++  +|++|++++.||.|++|+...   .-..+..+...|.+++....+|++|+.+++|.+|.+..++.. 
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~-   89 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED-   89 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc-
Confidence            45555555554  599999999999999998442   223333388899999999999999999999999999988653 


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecC
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD  262 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  262 (474)
                                                     ..+..-+-++++++|+-+|++++.|+.|-.|++.++.+......+.+|+
T Consensus        90 -------------------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~  138 (933)
T KOG1274|consen   90 -------------------------------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD  138 (933)
T ss_pred             -------------------------------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence                                           1233356689999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeee--eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          263 DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT--LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       263 ~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      .+|.++.++|++ +|++.+.||.|++||+..+...........  .......+..++|+|++..+++...|+.|++|+..
T Consensus       139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence            999999999999 999999999999999986543221111111  11124567889999999999999999999999988


Q ss_pred             cccccceeeeecc---eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          340 LNLSHGGVLRGHK---LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       340 ~~~~~~~~~~~~~---~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      ...........+.   ..++.|+|+|+|||+++.||.|.|||+++.+   .   ......|.+++|.|+..
T Consensus       219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~---~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R---HEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h---ccccceeEEEecCCCCC
Confidence            7765544433322   4457788999999999999999999998733   1   23446799999999987

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=3.7e-23  Score=197.09  Aligned_cols=356  Identities=21%  Similarity=0.268  Sum_probs=258.6

Q ss_pred             cceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCC
Q 047728           99 PNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~  177 (474)
                      ...++..-..+...|.|++.+.+++++|+.. .|.+|..+ .....+..|.+.|.-+..-|+.++++..++.+.||+...
T Consensus        65 kl~ll~vs~~lp~~I~alas~~~~vy~A~g~-~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~  143 (910)
T KOG1539|consen   65 KLNLLFVSKPLPDKITALASDKDYVYVASGN-KIYAYARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSS  143 (910)
T ss_pred             ceEEEEecCCCCCceEEEEecCceEEEecCc-EEEEEEccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEecc
Confidence            3344444456778899999999999988754 69999877 445667788889999999999999999999999999988


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEE------------Eee----eccceeeeccCCeeEEEecCCCCEEEEEECC
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIE------------VRR----HRNGLWIKHFDAISSLSMSEDQNLLYSASWD  241 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d  241 (474)
                      .+.....+....+...+++....+|..|+.            ++.    ....++.++...|+++.-+|--..++.|..+
T Consensus       144 ~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~  223 (910)
T KOG1539|consen  144 IQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLEN  223 (910)
T ss_pred             ccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccC
Confidence            522212223333344444555555554442            222    1224567888999999999988899999999


Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      |+|.+++++.++.+.+++...+.|+.+.|..||  .+++|+..|.+.+||++....     .......|.+.|..+.|.|
T Consensus       224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-----~~v~~nah~~sv~~~~fl~  298 (910)
T KOG1539|consen  224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-----INVTRNAHYGSVTGATFLP  298 (910)
T ss_pred             ceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-----eeeeeccccCCcccceecC
Confidence            999999999999999998667999999999999  889999999999999985433     1222234445555555555


Q ss_pred             CCCEEEEEcCCCcEEEe-----------------------------------------------ecCcc-------c---
Q 047728          320 DAAIVYCGSSDGLVNFW-----------------------------------------------ERELN-------L---  342 (474)
Q Consensus       320 ~~~~l~~~~~dg~i~v~-----------------------------------------------d~~~~-------~---  342 (474)
                      ....+++++.|+.+++|                                               ++...       .   
T Consensus       299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~  378 (910)
T KOG1539|consen  299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN  378 (910)
T ss_pred             CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence            55555555555544443                                               31000       0   


Q ss_pred             -----c-------------------------------------------------cceeeee--------cceeeEEEEe
Q 047728          343 -----S-------------------------------------------------HGGVLRG--------HKLAILCLVT  360 (474)
Q Consensus       343 -----~-------------------------------------------------~~~~~~~--------~~~~v~~~~~  360 (474)
                           .                                                 .......        -....+|+++
T Consensus       379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF  458 (910)
T ss_pred             ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence                 0                                                 0000001        1133467778


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceEEEEee---cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          361 AGNLVFSGSADMSICIWRRKENEHICLSML---TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      .|++.+.|...|.|-+|+++++-.  ...+   ..|.++|++++...-++        .+++++.||.+++|++.+....
T Consensus       459 CGNF~~IG~S~G~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~~n~--------~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  459 CGNFVFIGYSKGTIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDGTNR--------LLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cCceEEEeccCCeEEEEEcccCee--ecccccCccccCceeEEEecCCCc--------eEEEccCcceEEEEecCCccee
Confidence            899999999999999999999863  3344   58999999999998888        8999999999999999876421


Q ss_pred             C----------------------------------CCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          438 L----------------------------------VSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       438 ~----------------------------------~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      .                                  ...+..+.+.||+..|+++    +||||||.|+++|
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~----~FS~DgrWlisas  595 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM----TFSPDGRWLISAS  595 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee----EeCCCCcEEEEee
Confidence            1                                  0123456788999999999    8999999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.1e-25  Score=208.70  Aligned_cols=229  Identities=19%  Similarity=0.302  Sum_probs=191.2

Q ss_pred             CeeEEEecC-CCCEEEEEECCCcEEEEEcCC---cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC
Q 047728          222 AISSLSMSE-DQNLLYSASWDKTFKVWRTSD---YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       222 ~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      .+..+.|.. +.++|++++..|.|.+||+..   .+.+..+..|...++++.|++..  +|++|+.||+|++||++....
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            345677775 668999999999999999987   56777889999999999999887  999999999999999997664


Q ss_pred             ceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCC
Q 047728          296 GTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADM  372 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg  372 (474)
                            ..++......|+.+.|+| .+..++++...|.+.+||++........+..|.++++|+.  |++.+||+|+.|+
T Consensus       169 ------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  169 ------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             ------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence                  455666888999999999 7789999999999999999999888888899999998876  5789999999999


Q ss_pred             cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec--CCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728          373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS--LDKSVKMWRVSEQAPPLVSTTQQHPLEGH  450 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s--~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~  450 (474)
                      .|+|||..+.+...+.++. -..+|.+|+|-|+...       .|++++  .|-.|+|||++..-      .+...+..|
T Consensus       243 ~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~-------hLAtcsmv~dtsV~VWDvrRPY------IP~~t~~eH  308 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSY-------HLATCSMVVDTSVHVWDVRRPY------IPYATFLEH  308 (839)
T ss_pred             cEEEEeccCCCccceeEEe-ecceeeeeeeccCccc-------hhhhhhccccceEEEEeecccc------ccceeeecc
Confidence            9999999876644444443 3568999999999875       688876  57899999998763      455677889


Q ss_pred             CCCCCccccCC-------CCCcCCcee
Q 047728          451 GVAPNSLPYAP-------SFSSQGRIC  470 (474)
Q Consensus       451 ~~~v~~l~~~p-------~~s~Dg~~l  470 (474)
                      ...++.++|.-       +.|-||.++
T Consensus       309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  309 TDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             CccccceeccCCCceeeEeecCccHHH
Confidence            99999998875       346666554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=8.6e-25  Score=185.65  Aligned_cols=287  Identities=17%  Similarity=0.260  Sum_probs=209.4

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcce-eeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASI-HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ..+..|.+++.+-+|+  |..++||+.|..|+|.|++..-... ..++..               +..+....-..++..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~---------------~~~qa~hPvIRTlYD  170 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMIS---------------GDTQARHPVIRTLYD  170 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhcc---------------CCcccCCceEeehhh
Confidence            3456799999999998  7799999999999999998432111 000000               000001111245677


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      |.++|+++.|+|...+|++|+.|++|++||+......+.++  ....+|.++.|+|.| +|++|....++++||+++-+.
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc  250 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC  250 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence            99999999999999999999999999999997654333332  235689999999999 899999999999999986432


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE---EEecCCEEEEEeCCC
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC---LVTAGNLVFSGSADM  372 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~---~~~~~~~l~sgs~dg  372 (474)
                         ........+|.+.|+++.+++.+++.++++.||.|++||--.++++..+...|...-+|   |..+++++++.+.|.
T Consensus       251 ---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS  327 (430)
T KOG0640|consen  251 ---FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS  327 (430)
T ss_pred             ---eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence               11223456789999999999999999999999999999998888888888888765543   455899999999999


Q ss_pred             cEEEEECCCCceEEEEeecCC--cc---ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccc
Q 047728          373 SICIWRRKENEHICLSMLTGH--SG---PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPL  447 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h--~~---~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~  447 (474)
                      .+++|.+.+++.+  ....+-  ++   --+...|+.....       +|.---..+.+.-||-++.....      .--
T Consensus       328 ~vkLWEi~t~R~l--~~YtGAg~tgrq~~rtqAvFNhtEdy-------Vl~pDEas~slcsWdaRtadr~~------l~s  392 (430)
T KOG0640|consen  328 TVKLWEISTGRML--KEYTGAGTTGRQKHRTQAVFNHTEDY-------VLFPDEASNSLCSWDARTADRVA------LLS  392 (430)
T ss_pred             eeeeeeecCCceE--EEEecCCcccchhhhhhhhhcCccce-------EEccccccCceeeccccchhhhh------hcc
Confidence            9999999999844  444332  22   2234456665551       33333345789999998864321      123


Q ss_pred             cCCCCCCCccccCC
Q 047728          448 EGHGVAPNSLPYAP  461 (474)
Q Consensus       448 ~~~~~~v~~l~~~p  461 (474)
                      .+|.+.+..+.-+|
T Consensus       393 lgHn~a~R~i~HSP  406 (430)
T KOG0640|consen  393 LGHNGAVRWIVHSP  406 (430)
T ss_pred             cCCCCCceEEEeCC
Confidence            47888888886555

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.4e-24  Score=191.45  Aligned_cols=297  Identities=21%  Similarity=0.289  Sum_probs=212.2

Q ss_pred             EEEEcCCEEEEeeCCC---cEEEEeCCcccccc-ccCc----cCEEEEEec---------CCEEEEEeCCCeEEEEecCC
Q 047728          115 SLAAAGDLLYTGSDSK---NIRVWKNQREFSGF-KSNS----GLVKAIVIS---------NEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus       115 ~~~~~~~~l~tgs~dg---~v~vwd~~~~~~~~-~~h~----~~V~~i~~~---------~~~l~s~~~dg~i~vwd~~~  177 (474)
                      -+.|+.++|++|-.+.   .+.+|=.++.-..+ ..|.    ..-.|+.|.         ++++|.|..|..|.|||++-
T Consensus       132 ~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI  211 (463)
T KOG0270|consen  132 QVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDI  211 (463)
T ss_pred             eeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccc
Confidence            3567677777665432   23334222222222 2232    222455552         67999999999999999986


Q ss_pred             CCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCccee
Q 047728          178 KDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYKCL  255 (474)
Q Consensus       178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~  255 (474)
                      ...... ..++...            .......+.+...-.+|++.|.+++|+.. .+.|++|+.|.+|++||+.++++.
T Consensus       212 ~d~v~P~~~LGs~~------------sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~  279 (463)
T KOG0270|consen  212 VDAVLPCVTLGSKA------------SKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK  279 (463)
T ss_pred             ccccccceeechhh------------hhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc
Confidence            543321 1111100            00000011112223469999999999884 568899999999999999999999


Q ss_pred             eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCc
Q 047728          256 ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGL  332 (474)
Q Consensus       256 ~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~  332 (474)
                      .++..|.+.|.++.|+|..  .|++|+.|++|.+.|.|....      ........+.|..++|.| ....++++..||+
T Consensus       280 ~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  280 SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc------cCceEEeccceEEEEecCCCceeEEEecCCce
Confidence            9999999999999999987  899999999999999985332      223334467799999999 4567888899999


Q ss_pred             EEEeecCcccccceeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728          333 VNFWERELNLSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  409 (474)
                      |+-+|+|........+..|...|.+++.+   ..++++++.|+.|++|++.......+....-.-+...|.++.|+-.. 
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~-  432 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF-  432 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce-
Confidence            99999999877778889999999888775   57899999999999999976553222221112234677788888764 


Q ss_pred             cccceEEEEEecCCCcEEEEEccCCCC
Q 047728          410 SREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                            +++.|+..+.++|||+.+..+
T Consensus       433 ------~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  433 ------TLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ------EEEecCccceEEEeecccChh
Confidence                  789999999999999988643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=187.82  Aligned_cols=247  Identities=25%  Similarity=0.420  Sum_probs=196.1

Q ss_pred             CCEEEEeeC-CCcEEEEeCCccccc--cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728          120 GDLLYTGSD-SKNIRVWKNQREFSG--FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       120 ~~~l~tgs~-dg~v~vwd~~~~~~~--~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      +++++++.. ...|.+|...++...  ...-.+.|.+++-+  |.+|+.|+..|.|++|.+.++..+.            
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~------------  117 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN------------  117 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH------------
Confidence            456666654 446889987654332  33457789999887  5677777799999999999998753            


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC---------CcceeeeeeecCcce
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS---------DYKCLESVIAHDDAV  265 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~~~~~~~v  265 (474)
                                          ++.+|...|+|+.|+.|+.+|++|+.||.|.+|++.         +-+++..+..|.-+|
T Consensus       118 --------------------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI  177 (476)
T KOG0646|consen  118 --------------------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI  177 (476)
T ss_pred             --------------------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCccee
Confidence                                345699999999999999999999999999999863         346778889999999


Q ss_pred             eEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          266 NSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       266 ~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      +++...+.+   ++++++.|.++++||+..+.       ..........+.+++++|.+..+++|+++|.|.+.++....
T Consensus       178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-------LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-------LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS  250 (476)
T ss_pred             EEEEecCCCccceEEEecCCceEEEEEeccce-------eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence            999988775   99999999999999998653       23334456789999999999999999999999987754321


Q ss_pred             ---------------ccceeeeecce--eeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728          343 ---------------SHGGVLRGHKL--AILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE  403 (474)
Q Consensus       343 ---------------~~~~~~~~~~~--~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~  403 (474)
                                     .....+.+|..  .|.|  ++.||.+|++|+.||.|+|||+.+.+  ++.++....++|+.+.+.
T Consensus       251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpVtnL~i~  328 (476)
T KOG0646|consen  251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPVTNLQIN  328 (476)
T ss_pred             cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH--HHHHHhhhccccceeEee
Confidence                           11233456766  5555  55689999999999999999999888  666776678899999996


Q ss_pred             eCCc
Q 047728          404 KDDE  407 (474)
Q Consensus       404 ~~~~  407 (474)
                      |-.+
T Consensus       329 ~~~~  332 (476)
T KOG0646|consen  329 PLER  332 (476)
T ss_pred             cccc
Confidence            6544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=4.2e-23  Score=189.81  Aligned_cols=309  Identities=17%  Similarity=0.229  Sum_probs=228.6

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEecC---CEEEEEeCCCeEE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVISN---EKIFSGHQDGKIR  171 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~  171 (474)
                      |..+-..+.+|++.|.|++.+  |.+|++|+.||+|+||.  +++++..+. -.+.|.||+|++   ..+++.+.+..+.
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence            455666788999999998866  99999999999999998  445555554 345899999982   2444445554566


Q ss_pred             EEecCCCCcceeeeecccCccceeeeee---cCCCCeEEEeeec--------cceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCS---MKPSNYIEVRRHR--------NGLWIKHFDAISSLSMSEDQNLLYSASW  240 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~h~~~V~~l~~~~~~~~l~s~s~  240 (474)
                      |-+-.-+..+.....      .+.+...   ..+...+..+...        ..+...|...|+.+.|+..|.+|++...
T Consensus       468 ivnp~~G~~~e~~~t------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPT------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             EeCccccchhhhcch------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence            665444422111000      0000000   1111111122111        2355679999999999999999998865


Q ss_pred             C---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728          241 D---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA  316 (474)
Q Consensus       241 d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  316 (474)
                      +   ..|.|+++...+...-|....+.|.++.|+|.. +|++++ ...|+|||+..+.      +...+......|..++
T Consensus       542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe------lvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE------LVKKLLTGSKWISSMS  614 (733)
T ss_pred             CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH------HHHHHhcCCeeeeeee
Confidence            3   569999998877776776678889999999998 555554 5789999987533      3455566677899999


Q ss_pred             EcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC--CEEEEEeCCCcEEEEEC-------CCCceEEE
Q 047728          317 ISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG--NLVFSGSADMSICIWRR-------KENEHICL  387 (474)
Q Consensus       317 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sgs~dg~i~iwd~-------~~~~~~~~  387 (474)
                      ++|.|..|++++.|+.+..||++......+.+.-|...+..+.+..  .++++|+.||++.||--       .+...+.+
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl  694 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL  694 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence            9999999999999999999999988878888888998887777664  58999999999999853       23335567


Q ss_pred             EeecCCccc----eEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          388 SMLTGHSGP----VKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       388 ~~~~~h~~~----v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      ..+.+|...    |..+.|+|...        +|++++.||+|++|
T Consensus       695 K~L~gH~~~~~~gVLd~~wHP~qp--------WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  695 KRLRGHEKTNDLGVLDTIWHPRQP--------WLFSAGADGTIRLF  732 (733)
T ss_pred             eeccCceeecccceEeecccCCCc--------eEEecCCCceEEee
Confidence            888899766    99999999998        89999999999998

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.2e-23  Score=176.10  Aligned_cols=259  Identities=16%  Similarity=0.276  Sum_probs=189.6

Q ss_pred             eeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec----CCEEEEEeCCCeEEEEe
Q 047728          107 VREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       107 ~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd  174 (474)
                      .+|.+-|.++.|+  |+.+|||+.|++|+|||..+      .-...+.|.+.|..|.|.    |+.+++++.|++++||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            3688889998888  99999999999999999543      345578899999999996    88999999999999998


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCc
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      -.........                       ..-.+...+......|+++.|.|  -|-.|++++.||.|+||+.-..
T Consensus        90 E~~~~~~~~~-----------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   90 EQEKSEEAHG-----------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             eccccccccc-----------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence            6422211100                       00011134455778999999999  5678999999999999986432


Q ss_pred             ------ceeeeee-------ecCcceeEEEecCCC----eEEEeeCC-----CcEEEEEcccCCCceeeeeeeeeecccc
Q 047728          253 ------KCLESVI-------AHDDAVNSIVAGFDG----LVFTGSAD-----GTVKVWRRELQGKGTKHFFSQTLLKQEC  310 (474)
Q Consensus       253 ------~~~~~~~-------~~~~~v~~v~~~~~~----~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (474)
                            .+...+.       .+..+..|+.|++..    +|++|+.+     +.++||......  .+......+.++..
T Consensus       147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~d  224 (361)
T KOG2445|consen  147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTD  224 (361)
T ss_pred             cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCC
Confidence                  2222222       456778899999765    56666655     489999876443  24445667779999


Q ss_pred             cEEEEEEcCC----CCEEEEEcCCCcEEEeecCccc-------------------ccceeeeecceeeEEEEec--CCEE
Q 047728          311 AVTALAISPD----AAIVYCGSSDGLVNFWERELNL-------------------SHGGVLRGHKLAILCLVTA--GNLV  365 (474)
Q Consensus       311 ~v~~l~~~~~----~~~l~~~~~dg~i~v~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~--~~~l  365 (474)
                      +|+.++|.|+    -.+|++++.|| |+||.+....                   .....+.+|...+..+.++  |..|
T Consensus       225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL  303 (361)
T KOG2445|consen  225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL  303 (361)
T ss_pred             cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence            9999999994    35899999999 9999976321                   1122345788888766664  9999


Q ss_pred             EEEeCCCcEEEEECCC-CceEEEEeec
Q 047728          366 FSGSADMSICIWRRKE-NEHICLSMLT  391 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~-~~~~~~~~~~  391 (474)
                      .+.+.||.|++|...- ....|...+.
T Consensus       304 sStGdDG~VRLWkany~n~~kC~sv~~  330 (361)
T KOG2445|consen  304 SSTGDDGCVRLWKANYNNLWKCTSVLK  330 (361)
T ss_pred             eecCCCceeeehhhhhhhhheeeeEEe
Confidence            9999999999997653 2333444444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=164.24  Aligned_cols=246  Identities=22%  Similarity=0.262  Sum_probs=194.7

Q ss_pred             CCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-------cccccccCccCEEEEEec-----C-CE
Q 047728           96 GFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNSGLVKAIVIS-----N-EK  160 (474)
Q Consensus        96 ~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~~~V~~i~~~-----~-~~  160 (474)
                      ..+|..+.+.-+.|++.|+|.+++  |++|+||+.|++|++...+.       .-..+..|.+.|..++|-     + ..
T Consensus        75 ~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i  154 (350)
T KOG0641|consen   75 KQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI  154 (350)
T ss_pred             cCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence            456788888999999999998887  99999999999999985332       234567799999999995     2 34


Q ss_pred             EEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728          161 IFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS  239 (474)
Q Consensus       161 l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  239 (474)
                      |++++ .|..|.+-|-..++..                                ..+.+|++-|.++- +-++-.+++|+
T Consensus       155 l~s~gagdc~iy~tdc~~g~~~--------------------------------~a~sghtghilaly-swn~~m~~sgs  201 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRGQGF--------------------------------HALSGHTGHILALY-SWNGAMFASGS  201 (350)
T ss_pred             EEecCCCcceEEEeecCCCCcc--------------------------------eeecCCcccEEEEE-EecCcEEEccC
Confidence            55544 4555666565555432                                23456999888873 44688999999


Q ss_pred             CCCcEEEEEcCCcceeeeeee--c-----CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728          240 WDKTFKVWRTSDYKCLESVIA--H-----DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA  311 (474)
Q Consensus       240 ~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (474)
                      .|.+|++||++-..++.++..  |     ...|.++++.|.| +|++|-.|....+||++.+.      ..+.+..|...
T Consensus       202 qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r------~iq~f~phsad  275 (350)
T KOG0641|consen  202 QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR------MIQRFHPHSAD  275 (350)
T ss_pred             CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc------eeeeeCCCccc
Confidence            999999999998888887743  2     3579999999999 89999999999999999655      47888999999


Q ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeecCcc---cccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECC
Q 047728          312 VTALAISPDAAIVYCGSSDGLVNFWERELN---LSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      |.|+.|+|...++++++.|..|++-|++..   +....+...|+..++.+  .+..--+++.+.|.++.+|-+.
T Consensus       276 ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  276 IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            999999999999999999999999998754   22334455677666544  4556678899999999999754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=6.2e-22  Score=184.06  Aligned_cols=280  Identities=13%  Similarity=0.123  Sum_probs=191.7

Q ss_pred             CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728          120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      ++++++++.|+.|++||..  +.+..+..+. .+.+++|+  ++.+ ++++.++.|++||..+++......         
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---------   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence            4678999999999999953  4555555544 36678887  4455 567789999999998765432110         


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD  273 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  273 (474)
                                             .+ ..+..++|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++++|+
T Consensus        71 -----------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d  125 (300)
T TIGR03866        71 -----------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD  125 (300)
T ss_pred             -----------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence                                   12 224578899999877655 5689999999998887776653 344688999999


Q ss_pred             C-eEEEeeCCC-cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeee
Q 047728          274 G-LVFTGSADG-TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRG  350 (474)
Q Consensus       274 ~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~  350 (474)
                      + .++++..++ .+.+||.+....      .... .....+..++|+|+++.|+++ ..++.|++||+++......+...
T Consensus       126 g~~l~~~~~~~~~~~~~d~~~~~~------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~  198 (300)
T TIGR03866       126 GKIVVNTSETTNMAHFIDTKTYEI------VDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE  198 (300)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCeE------EEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence            9 777776665 467778764321      1111 122345789999999988655 46899999999877544322110


Q ss_pred             ----c----ceeeEEEEecCCEEEE-EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-
Q 047728          351 ----H----KLAILCLVTAGNLVFS-GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG-  420 (474)
Q Consensus       351 ----~----~~~v~~~~~~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~-  420 (474)
                          +    ...-++++++++++++ ...++.|.+||+++++..  ..+ .+...+.+++|+|+++        +|+++ 
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--~~~-~~~~~~~~~~~~~~g~--------~l~~~~  267 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--DYL-LVGQRVWQLAFTPDEK--------YLLTTN  267 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--EEE-EeCCCcceEEECCCCC--------EEEEEc
Confidence                1    1122567888988655 455678999999887633  222 2345799999999998        77765 


Q ss_pred             cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728          421 SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA  460 (474)
Q Consensus       421 s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  460 (474)
                      +.++.|++||+.+++       ....+.. ...+++++++
T Consensus       268 ~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~~  299 (300)
T TIGR03866       268 GVSNDVSVIDVAALK-------VIKSIKV-GRLPWGVVVR  299 (300)
T ss_pred             CCCCeEEEEECCCCc-------EEEEEEc-ccccceeEeC
Confidence            579999999999873       3334432 3455777544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=1.4e-22  Score=180.86  Aligned_cols=290  Identities=16%  Similarity=0.185  Sum_probs=216.3

Q ss_pred             eeeeeeeeecCcEEEEEEc---C-CEEEEeeCCCcEEEEeCC------ccccccccCccCEEEEEec---CCEEEEEeCC
Q 047728          101 VLIGSLVREEGHIYSLAAA---G-DLLYTGSDSKNIRVWKNQ------REFSGFKSNSGLVKAIVIS---NEKIFSGHQD  167 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~---~-~~l~tgs~dg~v~vwd~~------~~~~~~~~h~~~V~~i~~~---~~~l~s~~~d  167 (474)
                      .......-+.+.|++++|.   . +++|+|..-|.|-+||.+      ..+..+..|.++|.+|.|+   ...+++.+.|
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            3344566788999999987   3 689999999999999973      3456678899999999998   4589999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW  247 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw  247 (474)
                      |+|++-|++...........                              .....+.++.|+.+...++.+..=|.+.+|
T Consensus       257 GtiR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             ceeeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccceEEE
Confidence            99999999887543211110                              133456678888877778888777899999


Q ss_pred             EcCCcce-eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728          248 RTSDYKC-LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV  324 (474)
Q Consensus       248 d~~~~~~-~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  324 (474)
                      |+++... ...+..|+..|..++++|-.  ++++++.|++++|||++.......  +......|...|.+..|+|.+-.|
T Consensus       307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl  384 (498)
T KOG4328|consen  307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTL  384 (498)
T ss_pred             EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCce
Confidence            9997655 67778899999999999988  899999999999999986544322  245667899999999999988779


Q ss_pred             EEEcCCCcEEEeecC---cc-cccceeeeecce--e----eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-
Q 047728          325 YCGSSDGLVNFWERE---LN-LSHGGVLRGHKL--A----ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-  393 (474)
Q Consensus       325 ~~~~~dg~i~v~d~~---~~-~~~~~~~~~~~~--~----v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-  393 (474)
                      ++.+.|..|+|||..   .. .....+...+..  .    -..|.|+..++++|-.-..|-|+|-..++.+  ..+..- 
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v--~el~~P~  462 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV--CELHDPE  462 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe--eeccCcc
Confidence            999999999999984   22 222222222211  1    1456788999999999999999999888743  333222 


Q ss_pred             ccceEE-EEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          394 SGPVKC-LAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       394 ~~~v~~-l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      ...|.+ ..|+|-+..       +++.++..|.|.||--
T Consensus       463 ~~tI~~vn~~HP~~~~-------~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  463 SSTIPSVNEFHPMRDT-------LAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ccccccceeecccccc-------eeccCCccceEEEEec
Confidence            224444 478888762       3444456677887754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.4e-25  Score=208.70  Aligned_cols=227  Identities=23%  Similarity=0.389  Sum_probs=194.5

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      |...|.++..-...+.+++|++|..+-+|.+.....+..+.+|..+|.++.|+... +|++|+.+|+|++||++...   
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk---  103 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK---  103 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh---
Confidence            88899999987788999999999999999999888888999999999999999988 89999999999999998554   


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEeCCCcEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSIC  375 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~  375 (474)
                         ....+.+|...+.++.|+|-+.+.+.|+.|..+++||.+...+. ..+.+|...  ++.|+|+|++++.|++|.+++
T Consensus       104 ---~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~-~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  104 ---IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS-HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             ---hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce-eeecCCcceeEEEeecCCCceeeccCCcceee
Confidence               35688899999999999999999999999999999999965554 445556644  467889999999999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN  455 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~  455 (474)
                      |||...++  .+..+..|.+.+..+.|+|..-        ++++|+.|++|++||+++-+       ...........|.
T Consensus       180 i~d~~agk--~~~ef~~~e~~v~sle~hp~e~--------Lla~Gs~d~tv~f~dletfe-------~I~s~~~~~~~v~  242 (825)
T KOG0267|consen  180 IWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV--------LLAPGSSDRTVRFWDLETFE-------VISSGKPETDGVR  242 (825)
T ss_pred             eecccccc--cccccccccccccccccCchhh--------hhccCCCCceeeeeccceeE-------EeeccCCccCCce
Confidence            99999888  5678899999999999999987        89999999999999998652       2222333355677


Q ss_pred             ccccCCCCCcCCceeecc
Q 047728          456 SLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       456 ~l~~~p~~s~Dg~~l~~~  473 (474)
                      ++    +|.|||+.+.++
T Consensus       243 ~~----~fn~~~~~~~~G  256 (825)
T KOG0267|consen  243 SL----AFNPDGKIVLSG  256 (825)
T ss_pred             ee----eecCCceeeecC
Confidence            77    788888877654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=3.3e-23  Score=180.52  Aligned_cols=263  Identities=17%  Similarity=0.297  Sum_probs=196.1

Q ss_pred             eeeeeeeecCcEEEEEEc--C--CEEEEeeCCCcEEEEeCC------------------ccccccccCccCEEEEEecC-
Q 047728          102 LIGSLVREEGHIYSLAAA--G--DLLYTGSDSKNIRVWKNQ------------------REFSGFKSNSGLVKAIVISN-  158 (474)
Q Consensus       102 ~~~~l~~h~~~i~~~~~~--~--~~l~tgs~dg~v~vwd~~------------------~~~~~~~~h~~~V~~i~~~~-  158 (474)
                      +-.....|.+.|+.+...  +  .+.++=++.|.|.||++.                  +++.++.+|.+.=.+++|++ 
T Consensus       143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence            334456788888887755  3  377778889999999843                  34667788998899999984 


Q ss_pred             --CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEE
Q 047728          159 --EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLL  235 (474)
Q Consensus       159 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l  235 (474)
                        ..|++|..-+.|++|...++......                             .-+.+|+..|..|+|+| ....|
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~-----------------------------~Pf~gH~~SVEDLqWSptE~~vf  273 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQ-----------------------------RPFTGHTKSVEDLQWSPTEDGVF  273 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecC-----------------------------ccccccccchhhhccCCccCceE
Confidence              57999998899999999886543211                             23456999999999999 45789


Q ss_pred             EEEECCCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728          236 YSASWDKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA  311 (474)
Q Consensus       236 ~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (474)
                      ++|+.||+|+|||++.+   .++.+ ++|...|+.|.|+..- +|++|+.||+++|||++..+..   .+...+..|..+
T Consensus       274 aScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk~p  349 (440)
T KOG0302|consen  274 ASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHKAP  349 (440)
T ss_pred             EeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---CcceeEEeccCC
Confidence            99999999999999987   34443 8899999999999877 8999999999999999976554   356788999999


Q ss_pred             EEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728          312 VTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML  390 (474)
Q Consensus       312 v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  390 (474)
                      |+++.|+| +...|++++.|.+|.+||+............               +.   .+   +-|+.   +.+++..
T Consensus       350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~---------------a~---~~---L~dlP---pQLLFVH  405 (440)
T KOG0302|consen  350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQE---------------AA---EG---LQDLP---PQLLFVH  405 (440)
T ss_pred             eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccc---------------cc---cc---hhcCC---ceeEEEe
Confidence            99999999 5678889999999999998654332111000               00   00   11221   1122222


Q ss_pred             cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      . -...|..+.|+++-..       +|++.+.|| +.||.
T Consensus       406 q-GQke~KevhWH~QiPG-------~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  406 Q-GQKEVKEVHWHRQIPG-------LLVSTAIDG-FNVFK  436 (440)
T ss_pred             c-chhHhhhheeccCCCC-------eEEEecccc-eeEEE
Confidence            2 2346888999988765       788888888 55554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=7.4e-23  Score=184.23  Aligned_cols=282  Identities=15%  Similarity=0.170  Sum_probs=209.3

Q ss_pred             CCcEEEEeCCc--cccccccC--ccCEEEEEec-CCEEEEE--eCCCeEEEEecCCCCcceeeeecccCccceeeeeecC
Q 047728          129 SKNIRVWKNQR--EFSGFKSN--SGLVKAIVIS-NEKIFSG--HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK  201 (474)
Q Consensus       129 dg~v~vwd~~~--~~~~~~~h--~~~V~~i~~~-~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (474)
                      ...+++||...  ....+..|  ...+..+.|. .+.|+++  +.|..+++|.-....... .....+            
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~V-p~~~k~------------   77 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEV-PRVRKL------------   77 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcc-ceeecc------------
Confidence            33599999442  12222222  2238899998 4445554  567789999766542111 111100            


Q ss_pred             CCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728          202 PSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS  280 (474)
Q Consensus       202 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~  280 (474)
                                       ..+.-.|++......++++|+..+.|+|||++...+.+.++.|...|+++.+.... +|++++
T Consensus        78 -----------------~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs  140 (673)
T KOG4378|consen   78 -----------------TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS  140 (673)
T ss_pred             -----------------ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec
Confidence                             11233455555555899999999999999999888888999999999999998776 999999


Q ss_pred             CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceeeeecceee--EE
Q 047728          281 ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LC  357 (474)
Q Consensus       281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~  357 (474)
                      ..|.|.|..+.+..+..     .........|+-+.|+|..+ +|.+++.+|.|.+||.............|..+.  +|
T Consensus       141 ~gGdiiih~~~t~~~tt-----~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic  215 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTT-----TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC  215 (673)
T ss_pred             cCCcEEEEecccCcccc-----ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence            99999999987665411     11223345677899999665 566789999999999998888877888888776  77


Q ss_pred             EEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          358 LVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       358 ~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      |+|. ..+|++.+.|..|.+||......  ...+. ...|...++|.++|.        +|+.|...|.|..||++..+ 
T Consensus       216 fspsne~l~vsVG~Dkki~~yD~~s~~s--~~~l~-y~~Plstvaf~~~G~--------~L~aG~s~G~~i~YD~R~~k-  283 (673)
T KOG4378|consen  216 FSPSNEALLVSVGYDKKINIYDIRSQAS--TDRLT-YSHPLSTVAFSECGT--------YLCAGNSKGELIAYDMRSTK-  283 (673)
T ss_pred             ecCCccceEEEecccceEEEeecccccc--cceee-ecCCcceeeecCCce--------EEEeecCCceEEEEecccCC-
Confidence            7774 67889999999999999986652  22332 456899999999999        99999999999999998764 


Q ss_pred             CCCCCcccccccCCCCCCCccccCCC
Q 047728          437 PLVSTTQQHPLEGHGVAPNSLPYAPS  462 (474)
Q Consensus       437 ~~~~~~~~~~~~~~~~~v~~l~~~p~  462 (474)
                           .+...+..|...|++++|.|+
T Consensus       284 -----~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  284 -----APVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             -----CCceEeeecccceeEEEeeec
Confidence                 345567789999999988775

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.6e-24  Score=201.86  Aligned_cols=250  Identities=25%  Similarity=0.404  Sum_probs=208.2

Q ss_pred             EEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728          122 LLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS  199 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  199 (474)
                      ++.....+-.+++||.++    +..|...|.++..-  .+.+++|+.|..+-+|.+.......                 
T Consensus         6 ~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-----------------   64 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-----------------   64 (825)
T ss_pred             ccceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-----------------
Confidence            344444555677888654    45688888888754  6789999999999999987765442                 


Q ss_pred             cCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEE
Q 047728          200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT  278 (474)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~  278 (474)
                                     .|.+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+..+.|+|-+ +++.
T Consensus        65 ---------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~  129 (825)
T KOG0267|consen   65 ---------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFAS  129 (825)
T ss_pred             ---------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecc
Confidence                           245699999999999999999999999999999999999999999999999999999999 7889


Q ss_pred             eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728          279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL  358 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~  358 (474)
                      |+.|+.+++||.+..+      +.....+|...|..+.|+|+|++++.+++|..+++||+..+... ..+..|...+..+
T Consensus       130 gStdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sl  202 (825)
T KOG0267|consen  130 GSTDTDLKIWDIRKKG------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSL  202 (825)
T ss_pred             ccccccceehhhhccC------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-ccccccccccccc
Confidence            9999999999998655      36677779999999999999999999999999999999877654 4556677766554


Q ss_pred             --EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728          359 --VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK  424 (474)
Q Consensus       359 --~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg  424 (474)
                        .+..-++++|+.|+++++||+++.+  .+.........|.+++|+|++.        .+++|..+.
T Consensus       203 e~hp~e~Lla~Gs~d~tv~f~dletfe--~I~s~~~~~~~v~~~~fn~~~~--------~~~~G~q~s  260 (825)
T KOG0267|consen  203 EFHPLEVLLAPGSSDRTVRFWDLETFE--VISSGKPETDGVRSLAFNPDGK--------IVLSGEQIS  260 (825)
T ss_pred             ccCchhhhhccCCCCceeeeeccceeE--EeeccCCccCCceeeeecCCce--------eeecCchhh
Confidence              4557789999999999999999776  4566666788999999999998        677765543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=172.70  Aligned_cols=248  Identities=16%  Similarity=0.232  Sum_probs=176.6

Q ss_pred             cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee--e--eeecCcceeEEEecCCC--eEEEeeCCCcEE
Q 047728          213 NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE--S--VIAHDDAVNSIVAGFDG--LVFTGSADGTVK  286 (474)
Q Consensus       213 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~--~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~  286 (474)
                      ...+.+|.+.|++++|+.||+.|++++.|++|++|++++.....  .  ....-+-.+.+.|.||.  .++..-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            35678899999999999999999999999999999998743211  1  11122356889999998  666777778899


Q ss_pred             EEEcccCCCceeeee------eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEE
Q 047728          287 VWRRELQGKGTKHFF------SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLV  359 (474)
Q Consensus       287 iwd~~~~~~~~~~~~------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~  359 (474)
                      +|.+.....+.....      ......|.-.+..+-...++.+|++++.|..|.+|+++ ++.+..+-.. ....-.+++
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            998765433221111      11223456667777778889999999999999999998 4444333222 234457899


Q ss_pred             ecCCEEEEEeCCCcEEEEECC---CCc---eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          360 TAGNLVFSGSADMSICIWRRK---ENE---HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       360 ~~~~~l~sgs~dg~i~iwd~~---~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      |+|+++++++---.|++|.+-   .+.   ...+..+.+|...|..++|+++..        .++|.+.||+++|||+.-
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--------r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--------RAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--------eeEEEecCCcEEEeeccc
Confidence            999999999998899999873   221   223567899999999999999998        899999999999999763


Q ss_pred             ----CCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          434 ----QAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       434 ----~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                          ++.+.....-..++..-......|    +.||.|++++-+
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL----~lsP~g~~lA~s  349 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRL----ELSPSGDSLAVS  349 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEE----EeCCCCcEEEee
Confidence                233322222222333333334445    667778877643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.1e-22  Score=176.20  Aligned_cols=277  Identities=14%  Similarity=0.217  Sum_probs=209.9

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCc
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDA  180 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~  180 (474)
                      .+.|+++.|.  ..+|++|+.||+++||.+.    ..++.+.-...+|.+..|.  |. .+++++....+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4679998887  5699999999999999743    4455555567788888887  55 899999999999999998876


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA  260 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  260 (474)
                      ....+....                             ....+....+++++++|+..+..|.|.+....+++.+.+++-
T Consensus       293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki  343 (514)
T KOG2055|consen  293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI  343 (514)
T ss_pred             ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence            543332221                             234566788899999999999999999999999999999875


Q ss_pred             cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                       .+.|..++|+.++ .|++.+.+|.|.+||++....      ...+. ...-.-++++.++++.+||+|+..|.|.|||.
T Consensus       344 -eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~------~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  344 -EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC------LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             -ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce------EEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence             7789999999999 888889999999999986532      22222 22223467888899999999999999999996


Q ss_pred             Ccccc-----cceeeeec--ceeeEEEEecCCEEEEEe--CCCcEEEEECCCCceEEEEeec---CCccceEEEEEeeCC
Q 047728          339 ELNLS-----HGGVLRGH--KLAILCLVTAGNLVFSGS--ADMSICIWRRKENEHICLSMLT---GHSGPVKCLAVEKDD  406 (474)
Q Consensus       339 ~~~~~-----~~~~~~~~--~~~v~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~~~  406 (474)
                      ++...     +...+..-  ....+.|+++.++|+.++  .+..+++-.+.+...  ...+.   .--+.|+|++|+|.+
T Consensus       417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV--FsNfP~~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV--FSNFPTSNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee--eccCCCCCCcccceEEEEecCCC
Confidence            54321     11122222  233356667889988887  467888887765431  12222   233569999999999


Q ss_pred             ccccccceEEEEEecCCCcEEEEEcc
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      .        +||.|..+|.|.+|.+.
T Consensus       495 G--------~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  495 G--------YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             c--------eEEeecCCCceeeEeec
Confidence            8        99999999999999984

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.8e-21  Score=181.73  Aligned_cols=266  Identities=17%  Similarity=0.257  Sum_probs=207.4

Q ss_pred             ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      ...|.+++++  .+.||.+-.||.|.+|++...-.......                              .+....|.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~------------------------------g~~drsIE~   74 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIH------------------------------GPEDRSIES   74 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEe------------------------------cCCCCceee
Confidence            5679999998  56899999999999999987543221111                              124567999


Q ss_pred             EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728          226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT  304 (474)
Q Consensus       226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (474)
                      ++|.+ +..|++.+.+|.|.-||+.+++....+....+.|++++.+|.+ .++.|+.||.+..++...+    .......
T Consensus        75 L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~----~I~~~r~  149 (691)
T KOG2048|consen   75 LAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD----KITYKRS  149 (691)
T ss_pred             EEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc----eEEEEee
Confidence            99994 5678888999999999999999999999999999999999998 8999999997777765532    2233455


Q ss_pred             eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee----eeecc-eeeEEEE--e-cCCEEEEEeCCCcEEE
Q 047728          305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV----LRGHK-LAILCLV--T-AGNLVFSGSADMSICI  376 (474)
Q Consensus       305 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~-~~v~~~~--~-~~~~l~sgs~dg~i~i  376 (474)
                      +....+.|.+++|+|++..|+.|+.||.|++||...+......    ....+ ..++.++  + ....|++|..-|+|.+
T Consensus       150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~F  229 (691)
T KOG2048|consen  150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTF  229 (691)
T ss_pred             cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEE
Confidence            6667899999999999999999999999999999887655311    11111 2333332  2 4778999999999999


Q ss_pred             EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728          377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS  456 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  456 (474)
                      ||...+.  .+..+..|.+.|.+++..+++.        .+++++.|+.|..+.........   ........|...|.+
T Consensus       230 Wd~~~gT--LiqS~~~h~adVl~Lav~~~~d--------~vfsaGvd~~ii~~~~~~~~~~w---v~~~~r~~h~hdvrs  296 (691)
T KOG2048|consen  230 WDSIFGT--LIQSHSCHDADVLALAVADNED--------RVFSAGVDPKIIQYSLTTNKSEW---VINSRRDLHAHDVRS  296 (691)
T ss_pred             EcccCcc--hhhhhhhhhcceeEEEEcCCCC--------eEEEccCCCceEEEEecCCccce---eeeccccCCccccee
Confidence            9999887  5678888999999999999988        89999999999999988765532   233344567777877


Q ss_pred             cccCC
Q 047728          457 LPYAP  461 (474)
Q Consensus       457 l~~~p  461 (474)
                      ++.-+
T Consensus       297 ~av~~  301 (691)
T KOG2048|consen  297 MAVIE  301 (691)
T ss_pred             eeeec
Confidence            75544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.3e-22  Score=180.43  Aligned_cols=227  Identities=18%  Similarity=0.286  Sum_probs=177.1

Q ss_pred             CCEEEEeeCCCcEEEEeCC--c---c------------------ccccccCccCEEEEEec---CCEEEEEeCCCeEEEE
Q 047728          120 GDLLYTGSDSKNIRVWKNQ--R---E------------------FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~--~---~------------------~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vw  173 (474)
                      |+|+|.|+.|..|.|||+.  .   +                  -....+|+.+|.++.|+   .+.|++|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            7799999999999999843  0   0                  01123699999999998   5689999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      |++++++....                                ..|.+.|.++.|+| ....|++|+.|++|.+.|.+..
T Consensus       272 D~~~g~p~~s~--------------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  272 DVDTGKPKSSI--------------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             EcCCCCcceeh--------------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            99999875432                                23999999999999 6688999999999999999864


Q ss_pred             ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcC
Q 047728          253 KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSS  329 (474)
Q Consensus       253 ~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~  329 (474)
                      ......-...+.|-.++|.+..  .++++..||+|+-+|+|..++     +.-.+..|..+|.+|++++. ..++++++.
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeeccc
Confidence            4333333346789999999987  888999999999999998765     67788899999999999984 567889999


Q ss_pred             CCcEEEeecCcccccceeeeecc-eeeEEEEec---CCEEEEEeCCCcEEEEECCCCc
Q 047728          330 DGLVNFWERELNLSHGGVLRGHK-LAILCLVTA---GNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       330 dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      |+.|++|++..........+... ....|+.++   .-.++.|+..+.++|||+.+..
T Consensus       395 d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            99999999865433211111111 113444443   4578888888899999998765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=4.5e-22  Score=168.10  Aligned_cols=218  Identities=24%  Similarity=0.317  Sum_probs=165.6

Q ss_pred             ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          143 GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ....|.+.|+++.++   ++++++|+.||.|.+||++..........         +.    ....+.-+.+    -.+|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l---------i~----k~~c~v~~~h----~~~H  100 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL---------IA----KHKCIVAKQH----ENGH  100 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc---------ee----heeeeccccC----Cccc
Confidence            345688999999997   88999999999999999987542110000         00    0000001111    1348


Q ss_pred             cCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC----eEEEeeCCCcEEEEEcccCC
Q 047728          220 FDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG----LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       220 ~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~  294 (474)
                      .-.|.++.|-| |...+.+++.|.++++||..+.+....++- ++.|+.-+++|-.    ++++|..|-.|++.|+..+.
T Consensus       101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs  179 (397)
T KOG4283|consen  101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS  179 (397)
T ss_pred             eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence            88999999999 778999999999999999999888877754 6778887877753    78889999999999998765


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCccccccee--------------eeecceee--EE
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGV--------------LRGHKLAI--LC  357 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~--------------~~~~~~~v--~~  357 (474)
                            +...+.+|...|.++.|+|... .|++|+.||.|++||++...-....              ...|...+  +|
T Consensus       180 ------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  180 ------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             ------ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence                  4788999999999999999665 6788999999999998754211111              22344444  56


Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCce
Q 047728          358 LVTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       358 ~~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      +..++.++++++.|..+++|+..+++.
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCcc
Confidence            667899999999999999999987753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.9e-22  Score=181.59  Aligned_cols=256  Identities=13%  Similarity=0.215  Sum_probs=204.2

Q ss_pred             EEEEEEc-CCEEEEee--CCCcEEEEeCCcc---ccccc-cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728          113 IYSLAAA-GDLLYTGS--DSKNIRVWKNQRE---FSGFK-SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       113 i~~~~~~-~~~l~tgs--~dg~v~vwd~~~~---~~~~~-~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~  183 (474)
                      +.++.++ .++|++++  .|..|++|.-...   +.... ...+.-.|++..  .-++++|+..+.|+|||+....+.  
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h--  114 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH--  114 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh--
Confidence            7888888 44466554  5778999963322   11111 111122233322  479999999999999999854332  


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-C
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-D  262 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~  262 (474)
                                                    ..+.+|...|+++.++....+|++++..|.|.|..+.++.....+... .
T Consensus       115 ------------------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen  115 ------------------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG  164 (673)
T ss_pred             ------------------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence                                          234569999999999999999999999999999999998887777654 4


Q ss_pred             cceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecC
Q 047728          263 DAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       263 ~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~  339 (474)
                      ..|.-+.+++..  +|.+++.+|.|.+||......     .......|..+...++|+| +..+|++.+.|..|.+||.+
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCc-----ccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            556688999887  788999999999999975544     3455678999999999999 66788899999999999999


Q ss_pred             cccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          340 LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      .......+...|....++|.++|.+|++|...|.|..||++..+. ++.++..|...|++++|-+..
T Consensus       240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~-Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA-PVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC-CceEeeecccceeEEEeeecc
Confidence            887777778889999999999999999999999999999997655 478899999999999998874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.6e-21  Score=179.09  Aligned_cols=280  Identities=19%  Similarity=0.264  Sum_probs=213.9

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc---ccccc-cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcce
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE---FSGFK-SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~---~~~~~-~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~  182 (474)
                      ...|.|++++  .+.||.+-.||+|.||+....   ...+. +....|.+++|. +.+|++.+.+|.|.-||+.+.+...
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence            3579999998  668999999999999985532   22233 346779999999 8899999999999999999887653


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee--eee
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES--VIA  260 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~  260 (474)
                      ...                                ...++|++++.+|.+..++.|++||.+..++...++....  +..
T Consensus       105 ~~d--------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen  105 NID--------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             Eec--------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence            222                                2567899999999999999999999888888877665433  334


Q ss_pred             cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeee-eeee-ecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728          261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFF-SQTL-LKQECAVTALAISPDAAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d  337 (474)
                      .++.|.++.|++++ .++.|+.||.|++||...+........ ...+ .....-|+++.|-. ...|++|.+.|+|.+||
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWD  231 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEc
Confidence            56899999999999 699999999999999986654221110 0111 11344578888874 45788899999999999


Q ss_pred             cCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCc--eEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          338 RELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENE--HICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       338 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      ...+... +....|...|.|+..  +++++++++.|+.|..|...++.  .+.......|...|.+++..++        
T Consensus       232 ~~~gTLi-qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--------  302 (691)
T KOG2048|consen  232 SIFGTLI-QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--------  302 (691)
T ss_pred             ccCcchh-hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--------
Confidence            9887654 455667788877765  57899999999999999887653  3334455678888999999887        


Q ss_pred             eEEEEEecCCCcEEEEEccC
Q 047728          414 RWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~~~~  433 (474)
                        .+++|+.|..+.+-....
T Consensus       303 --~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  303 --ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             --eEEecceeeEEEEccccc
Confidence              578888888777665443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=2.3e-22  Score=186.37  Aligned_cols=265  Identities=20%  Similarity=0.278  Sum_probs=193.2

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      ...|+.+.+||.|.++|.....-...                          ......+..|...|.++.|.|....|++
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~e--------------------------e~~lk~~~aH~nAifDl~wapge~~lVs  117 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLE--------------------------ERQLKKPLAHKNAIFDLKWAPGESLLVS  117 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchh--------------------------hhhhcccccccceeEeeccCCCceeEEE
Confidence            34799999999999999876543200                          0011345669999999999997789999


Q ss_pred             EECCCcEEEEEcCCcceeee--eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee-e-------------
Q 047728          238 ASWDKTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK-H-------------  299 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~-~-------------  299 (474)
                      ++.|.++++||+++.+++..  +.+|...|.+++|.+.+  .|++|+.||.|.|||++-...... .             
T Consensus       118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p  197 (720)
T KOG0321|consen  118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP  197 (720)
T ss_pred             ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence            99999999999999988877  88999999999999998  899999999999999874331000 0             


Q ss_pred             e-------eeeeeecccccEEE---EEEcCCCCEEEEEcC-CCcEEEeecCcccccceee-------eec---ceeeEEE
Q 047728          300 F-------FSQTLLKQECAVTA---LAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVL-------RGH---KLAILCL  358 (474)
Q Consensus       300 ~-------~~~~~~~~~~~v~~---l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~-------~~~---~~~v~~~  358 (474)
                      .       -......+...|.+   +.+..|...|++++. |+.|+|||++.........       ..|   ...++++
T Consensus       198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence            0       01111223334444   455567788888777 9999999998765432211       112   2334455


Q ss_pred             Ee--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc--eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          359 VT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP--VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       359 ~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..  .|.+|++.+.|+.|++|++.+.....+..+.++...  -..-..+|++.        +|++|+.|....+|.+...
T Consensus       278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~--------~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC--------SLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc--------eEeccCCCcceeeeeecCc
Confidence            44  579998888899999999987665445555554322  12234678888        9999999999999999987


Q ss_pred             CCCCCCCcccccccCCCCCCCccccCCC
Q 047728          435 APPLVSTTQQHPLEGHGVAPNSLPYAPS  462 (474)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~  462 (474)
                      +.      ....+.+|...|..+.|.|+
T Consensus       350 e~------~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  350 EA------PPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             cC------ChhhhhCcceEEEEEeeccc
Confidence            53      34457889999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.5e-21  Score=186.76  Aligned_cols=242  Identities=18%  Similarity=0.224  Sum_probs=196.8

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      .|...-+.|+|.  ++.|++++.||.|++|+........                               .....+...|
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------------------------~ti~~~g~~v   59 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------------------------ETIDISGELV   59 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------------------------chhhccCcee
Confidence            578888889987  7899999999999999976652110                               0111166677


Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      .+++..  ..+|++|+.+++|.+|.+.+++.-..+....-++++++++-+| +++.|+.|-.|++-+......      .
T Consensus        60 ~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~------~  131 (933)
T KOG1274|consen   60 SSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ------E  131 (933)
T ss_pred             EEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch------h
Confidence            777664  4589999999999999999888766666677899999999999 999999999999999876654      6


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee---------ecceeeEEEEecCCEEEEEeCCCc
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---------GHKLAILCLVTAGNLVFSGSADMS  373 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~l~sgs~dg~  373 (474)
                      ..+.+|..+|.++.|+|++++||+.+.||.|++||++.+.....+..         .......+|+|++..++....|+.
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence            78889999999999999999999999999999999987754322211         122334778889888888899999


Q ss_pred             EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |++|+..+.+.........+...+.+++|+|.|.        |||+++.||.|.|||+.+.
T Consensus       212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~--------YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK--------YIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             EEEEccCCceeheeecccccccceEEEEEcCCCc--------EEeeeccCCcEEEEecccc
Confidence            9999999887554444455666699999999999        9999999999999999873

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.2e-21  Score=163.77  Aligned_cols=283  Identities=17%  Similarity=0.196  Sum_probs=203.9

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ..+-.+|....  ..|+.|+  |.+||+|+.||.|.|||.  ...-..+.+|..+|++++|+  |..|+|++.|..|.+|
T Consensus        15 Eel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lw   92 (405)
T KOG1273|consen   15 EELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLW   92 (405)
T ss_pred             HhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEE
Confidence            34444444333  5666666  999999999999999994  35667789999999999998  7899999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~  252 (474)
                      |+..+.+....+                                 -..+|+...|+|.. +..++.-.+..-.+-++...
T Consensus        93 Dl~~gs~l~rir---------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~  139 (405)
T KOG1273|consen   93 DLLKGSPLKRIR---------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP  139 (405)
T ss_pred             eccCCCceeEEE---------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCC
Confidence            999998654443                                 55689999999933 34444434444555555542


Q ss_pred             ceeeeeeecC----cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcCCCCEEEE
Q 047728          253 KCLESVIAHD----DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISPDAAIVYC  326 (474)
Q Consensus       253 ~~~~~~~~~~----~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~  326 (474)
                      +....-....    ....+..|.+.| ++++|...|.+.++|..+...      ...+... ...|..+.++..|+.|+.
T Consensus       140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~------vas~rits~~~IK~I~~s~~g~~lii  213 (405)
T KOG1273|consen  140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC------VASFRITSVQAIKQIIVSRKGRFLII  213 (405)
T ss_pred             ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee------eeeeeechheeeeEEEEeccCcEEEE
Confidence            2111111111    112233577777 999999999999999886542      3333333 367999999999999999


Q ss_pred             EcCCCcEEEeecCccccc------------ceeeeecceeeEEEEecCCEEEEEeC-CCcEEEEECCCCceEEEEeecCC
Q 047728          327 GSSDGLVNFWERELNLSH------------GGVLRGHKLAILCLVTAGNLVFSGSA-DMSICIWRRKENEHICLSMLTGH  393 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~------------~~~~~~~~~~v~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~h  393 (474)
                      .+.|..|+.|+++.-...            ......-.-...|++-+|.|+++|+. -..++||....+.  ++..+.|-
T Consensus       214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~  291 (405)
T KOG1273|consen  214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS--LVKILHGT  291 (405)
T ss_pred             ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc--eeeeecCC
Confidence            999999999997622111            11112223345788889999998874 4689999999888  56677776


Q ss_pred             c-cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          394 S-GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       394 ~-~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      . ....++.|+|-..        ++++- ..|.|++|.....
T Consensus       292 kgE~l~DV~whp~rp--------~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  292 KGEELLDVNWHPVRP--------IIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             chhheeeccccccee--------eeeec-cCCceEEEEeecc
Confidence            6 5688999999987        77777 7789999987653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=3e-22  Score=185.34  Aligned_cols=118  Identities=22%  Similarity=0.355  Sum_probs=100.5

Q ss_pred             cEEEEEEcC-CCCEEEEEcCCCcEEEeecCcc------cccceeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECC
Q 047728          311 AVTALAISP-DAAIVYCGSSDGLVNFWERELN------LSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       311 ~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~  380 (474)
                      .|+.+.|+| |...|++++.||.|++|.+..+      .....++..|...|..+.+.   .+.|++++.|.+|++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            467777888 7889999999999999997654      23445677888888777764   7899999999999999999


Q ss_pred             CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728          381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL  438 (474)
Q Consensus       381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~  438 (474)
                      +..  ....+.+|++.|.+++|+|+|+        .+++.+.||+|+||+-+.++.+.
T Consensus       709 ~~~--~~~~l~gHtdqIf~~AWSpdGr--------~~AtVcKDg~~rVy~Prs~e~pv  756 (1012)
T KOG1445|consen  709 NAK--LYSRLVGHTDQIFGIAWSPDGR--------RIATVCKDGTLRVYEPRSREQPV  756 (1012)
T ss_pred             hhh--hhheeccCcCceeEEEECCCCc--------ceeeeecCceEEEeCCCCCCCcc
Confidence            887  3568899999999999999999        89999999999999988875443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.3e-21  Score=168.72  Aligned_cols=272  Identities=14%  Similarity=0.250  Sum_probs=200.4

Q ss_pred             CEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728          121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      ..+|++...|.|++||..  +.+..++++...++.+.|.    +..+.+|+.||+|++||++...........       
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-------  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-------  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-------
Confidence            678999999999999854  5888999999999999886    468999999999999999987655433322       


Q ss_pred             eeeeecCCCCeEEEeeeccceeeecc-CCeeEEEecCCCCEEEEEE----CCCcEEEEEcCCcce-eeee-eecCcceeE
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHF-DAISSLSMSEDQNLLYSAS----WDKTFKVWRTSDYKC-LESV-IAHDDAVNS  267 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~  267 (474)
                                             .+. .+..|++.+..++.+++|+    .+..|.+||++..+. +..+ ..|.+.|++
T Consensus       114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~  170 (376)
T KOG1188|consen  114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ  170 (376)
T ss_pred             -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence                                   233 5677888877788888876    467899999998766 5554 569999999


Q ss_pred             EEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCccccc
Q 047728          268 IVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSH  344 (474)
Q Consensus       268 v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~  344 (474)
                      +.|+|..  +|++|+.||.|.+||++....   ...+.....+...|.++.|..++ +.|.+-+..+...+|+++.+...
T Consensus       171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             EEecCCCCCeEEeecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            9999987  999999999999999975532   11334455677889999999876 56888899999999999876543


Q ss_pred             ceeeee------------cceeeEEEEe-cCCEEEEEeC-CCcEEEEECC---CCc-eEEEEeecC-CccceEEEEEeeC
Q 047728          345 GGVLRG------------HKLAILCLVT-AGNLVFSGSA-DMSICIWRRK---ENE-HICLSMLTG-HSGPVKCLAVEKD  405 (474)
Q Consensus       345 ~~~~~~------------~~~~v~~~~~-~~~~l~sgs~-dg~i~iwd~~---~~~-~~~~~~~~~-h~~~v~~l~~~~~  405 (474)
                      ......            -..-|-+.++ +...++.++. -+...++-+.   ++. ...+..+.+ |..-|+++.|...
T Consensus       248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~  327 (376)
T KOG1188|consen  248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK  327 (376)
T ss_pred             hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence            322221            1112233334 3445555444 5666665443   221 112344555 7778899999877


Q ss_pred             CccccccceEEEEEecCCCcEEEEEccC
Q 047728          406 DESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.        +++|||+||.+.+|....
T Consensus       328 ~~--------~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  328 ND--------VLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             cc--------eeeccCCCceEEEEecCC
Confidence            77        999999999999999643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=1.2e-21  Score=167.89  Aligned_cols=284  Identities=19%  Similarity=0.260  Sum_probs=206.6

Q ss_pred             eeeecCcEEEEEEc-------CCEEEEeeCCCcEEEEeCCc-----ccccc--ccCccCEEEEEec------CCEEEEEe
Q 047728          106 LVREEGHIYSLAAA-------GDLLYTGSDSKNIRVWKNQR-----EFSGF--KSNSGLVKAIVIS------NEKIFSGH  165 (474)
Q Consensus       106 l~~h~~~i~~~~~~-------~~~l~tgs~dg~v~vwd~~~-----~~~~~--~~h~~~V~~i~~~------~~~l~s~~  165 (474)
                      ...|..+|..++|+       ...+||.+.+ .+.+|+...     .++.+  ..|...-..++|.      +-+++.|+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            34677889999987       3366776654 588887332     12222  1366677777775      33789999


Q ss_pred             CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcE
Q 047728          166 QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTF  244 (474)
Q Consensus       166 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i  244 (474)
                      .-|.|+|.|+.++++.                                +.+.+|..+|+.|.+.|+ .+++++++.|..|
T Consensus       113 ~~GvIrVid~~~~~~~--------------------------------~~~~ghG~sINeik~~p~~~qlvls~SkD~sv  160 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCS--------------------------------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSV  160 (385)
T ss_pred             ceeEEEEEecchhhhc--------------------------------cceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence            9999999999988765                                345679999999999995 4789999999999


Q ss_pred             EEEEcCCcceeeee---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce---------------------ee
Q 047728          245 KVWRTSDYKCLESV---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT---------------------KH  299 (474)
Q Consensus       245 ~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~---------------------~~  299 (474)
                      ++|++++..++..+   .+|.+.|.++.|+.++ ++++++.|..|++|++....-..                     ..
T Consensus       161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~  240 (385)
T KOG1034|consen  161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH  240 (385)
T ss_pred             EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence            99999999999887   4699999999999999 99999999999999987321100                     00


Q ss_pred             eee-eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec-Ccccccceeeee--------------cceeeEEE--Eec
Q 047728          300 FFS-QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER-ELNLSHGGVLRG--------------HKLAILCL--VTA  361 (474)
Q Consensus       300 ~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~--------------~~~~v~~~--~~~  361 (474)
                      ++. .+...|...|.|+.|-  |+++++-+-++.|..|.. +-.+.......+              -...-+.+  .+-
T Consensus       241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~  318 (385)
T KOG1034|consen  241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW  318 (385)
T ss_pred             cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence            011 1334466677777775  578888888999999987 222221111111              11112333  344


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          362 GNLVFSGSADMSICIWRRKENEHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       362 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      ++.|+.|...|.|.+||++..++....++..  ....|...+|+.|+.        +|+...+|++|.-||.-
T Consensus       319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs--------~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS--------ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc--------EEEEEeCCCcEEEEEee
Confidence            8899999999999999999877543333332  245799999999999        89999999999988853

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.1e-20  Score=173.81  Aligned_cols=252  Identities=15%  Similarity=0.141  Sum_probs=173.0

Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE-EE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL-YS  237 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s  237 (474)
                      +.+++++.|+.|++||+.+++.....                                . +...+.+++|+|+++.+ ++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~--------------------------------~-~~~~~~~l~~~~dg~~l~~~   48 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTF--------------------------------P-VGQRPRGITLSKDGKLLYVC   48 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEE--------------------------------E-CCCCCCceEECCCCCEEEEE
Confidence            56889999999999999877543211                                1 22346789999999877 56


Q ss_pred             EECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          238 ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      ++.++.|++||..+++.+..+..+.. +..++++|++ .++ ++..++.|++||++....      ...+ .....+..+
T Consensus        49 ~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~------~~~~-~~~~~~~~~  120 (300)
T TIGR03866        49 ASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV------LAEI-PVGVEPEGM  120 (300)
T ss_pred             ECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE------EeEe-eCCCCcceE
Confidence            67889999999999888777765443 5678899998 454 455689999999975321      1111 223346789


Q ss_pred             EEcCCCCEEEEEcCCC-cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE-eCCCcEEEEECCCCceEEEEeecCC
Q 047728          316 AISPDAAIVYCGSSDG-LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG-SADMSICIWRRKENEHICLSMLTGH  393 (474)
Q Consensus       316 ~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~~~h  393 (474)
                      +|+|++.+++++..++ .+.+||.++..........+.....++++++++|+++ ..++.|++||+.+++..  ..+..+
T Consensus       121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~--~~~~~~  198 (300)
T TIGR03866       121 AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI--KKITFE  198 (300)
T ss_pred             EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee--eeeeec
Confidence            9999999999988775 4677898776554333334444557788899988654 46999999999987632  232211


Q ss_pred             -----cc--ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcC
Q 047728          394 -----SG--PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQ  466 (474)
Q Consensus       394 -----~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~D  466 (474)
                           ..  ....++|+|+++.       ++++.+.++.|.+||+.+++..       ..+ .+...+.++    +|+||
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~-------~~~~~~~~~~i~v~d~~~~~~~-------~~~-~~~~~~~~~----~~~~~  259 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKT-------AFVALGPANRVAVVDAKTYEVL-------DYL-LVGQRVWQL----AFTPD  259 (300)
T ss_pred             ccccccccCCccceEECCCCCE-------EEEEcCCCCeEEEEECCCCcEE-------EEE-EeCCCcceE----EECCC
Confidence                 11  2356889999982       2444556778999999765321       111 122345555    78888


Q ss_pred             Cceeec
Q 047728          467 GRICQK  472 (474)
Q Consensus       467 g~~l~~  472 (474)
                      |+.|..
T Consensus       260 g~~l~~  265 (300)
T TIGR03866       260 EKYLLT  265 (300)
T ss_pred             CCEEEE
Confidence            987764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=1.2e-21  Score=170.95  Aligned_cols=236  Identities=16%  Similarity=0.261  Sum_probs=178.4

Q ss_pred             eeccCCeeEEEecCCC--CEEEEEECCCcEEEEEcC----------------CcceeeeeeecCcceeEEEecCC--CeE
Q 047728          217 IKHFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTS----------------DYKCLESVIAHDDAVNSIVAGFD--GLV  276 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~~v~~~~~--~~l  276 (474)
                      ..|.+.++.+...+-+  .+.++=+..|.|.|||+.                ..+++.++.+|...=++++|+|-  |.|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4577788888777754  444555678999999984                23567788899999999999994  489


Q ss_pred             EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccc-cceeeeeccee
Q 047728          277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLS-HGGVLRGHKLA  354 (474)
Q Consensus       277 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~  354 (474)
                      ++|..-+.|++|....+.   -.+-...+.+|...|..|+|+| ....|++|+.||+|+|||++.+.. .....+.|...
T Consensus       228 lsGDc~~~I~lw~~~~g~---W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGS---WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD  304 (440)
T ss_pred             ccCccccceEeeeeccCc---eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence            999999999999877532   2233456677999999999999 557899999999999999998733 22344678777


Q ss_pred             eEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          355 ILCLVTA--GNLVFSGSADMSICIWRRKENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       355 v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      |..++++  ..+|++|+.||+++|||++.-+. .++..++-|..+|++|.|+|....       .|++++.|..|.|||+
T Consensus       305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-------~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-------VIAASGEDNQITIWDL  377 (440)
T ss_pred             eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-------eEEeccCCCcEEEEEe
Confidence            7777775  45899999999999999975431 257789999999999999998775       7999999999999999


Q ss_pred             cCCCCCCC---------CCcccccccCC--CCCCCccccCCC
Q 047728          432 SEQAPPLV---------STTQQHPLEGH--GVAPNSLPYAPS  462 (474)
Q Consensus       432 ~~~~~~~~---------~~~~~~~~~~~--~~~v~~l~~~p~  462 (474)
                      .-......         ...+.+-+-.|  ...+..+.||+-
T Consensus       378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ  419 (440)
T ss_pred             eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence            75433110         11122233334  345788888864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=1.8e-20  Score=165.13  Aligned_cols=300  Identities=19%  Similarity=0.249  Sum_probs=205.9

Q ss_pred             cCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-----------cccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          110 EGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-----------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       110 ~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-----------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ..+|+++.+.   .+.|+||+.|..|++|...+           .+..+..|..+|+++.|+  ++.|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            3568888887   33899999999999996331           244577899999999999  6699999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      ....-.... ...          ....+...+..     ..++.+|...|..++|+|++.++++++.|..+++||+..|.
T Consensus        93 k~~~~~~~~-~d~----------e~~~~ke~w~v-----~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   93 KQGDVRIFD-ADT----------EADLNKEKWVV-----KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             EecCcCCcc-ccc----------hhhhCccceEE-----EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence            877421110 000          00111111111     13456699999999999999999999999999999999999


Q ss_pred             eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee--eeeeeec---------------ccccEEEE
Q 047728          254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF--FSQTLLK---------------QECAVTAL  315 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~---------------~~~~v~~l  315 (474)
                      .+..+..|...|..++|.|-+ ++++-+.|...+.+.+...+......  .......               ...-...+
T Consensus       157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence            999999999999999999988 88888888877777665433221111  0000000               11235668


Q ss_pred             EEcCCCCEEEEEcC----CC-----cEEEeecCcccccceeeeecceeeEEEE---------e----------cCCEEEE
Q 047728          316 AISPDAAIVYCGSS----DG-----LVNFWERELNLSHGGVLRGHKLAILCLV---------T----------AGNLVFS  367 (474)
Q Consensus       316 ~~~~~~~~l~~~~~----dg-----~i~v~d~~~~~~~~~~~~~~~~~v~~~~---------~----------~~~~l~s  367 (474)
                      +|+|+|.+|++...    .+     ..++|+......+...+..-....+.+.         +          --+++++
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa  316 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA  316 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence            89999999987542    22     2345554433332222222222222211         1          0123444


Q ss_pred             EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       368 gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ......|+|||.+...+.. ..-.-|-.+|++++|++++.        +|+..|.||...+-.++..
T Consensus       317 iAt~~svyvydtq~~~P~~-~v~nihy~~iTDiaws~dg~--------~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  317 IATKNSVYVYDTQTLEPLA-VVDNIHYSAITDIAWSDDGS--------VLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EeecceEEEeccccccceE-EEeeeeeeeecceeecCCCc--------EEEEeccCCceEEEEEcch
Confidence            4446689999999877543 34455889999999999999        8999999999888777654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=8e-22  Score=194.69  Aligned_cols=250  Identities=19%  Similarity=0.252  Sum_probs=194.9

Q ss_pred             ccCEEEEEec--CC----EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          148 SGLVKAIVIS--NE----KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       148 ~~~V~~i~~~--~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      ...-+.++|.  +.    .|+.|..||.|.+||...-...  .....+                        ..+..|.+
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--~~~~~l------------------------a~~~~h~G  117 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--ASEEVL------------------------ATKSKHTG  117 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccC--cchHHH------------------------hhhcccCC
Confidence            4456778886  33    5899999999999998763110  000000                        22345999


Q ss_pred             CeeEEEecCC-CCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc
Q 047728          222 AISSLSMSED-QNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       222 ~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      .|..+.|++. +++|++|+.||.|.|||+...+.-.++.  ...+.|.+++|+..-  .|++++.+|.+.|||++..+..
T Consensus       118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi  197 (1049)
T KOG0307|consen  118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI  197 (1049)
T ss_pred             ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence            9999999995 4599999999999999998866554442  245789999999876  8999999999999999965331


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCC---cEEEeecCcccccceeeeecceeeEEEEe---cCCEEEEEe
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDG---LVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGS  369 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs  369 (474)
                          +..........+..++|+|+. ..|++++.|.   .|.+||++......+++.+|...++++++   |..+|++++
T Consensus       198 ----i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg  273 (1049)
T KOG0307|consen  198 ----IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG  273 (1049)
T ss_pred             ----cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc
Confidence                112222233558899999965 4566666554   58999999888888888999999999987   458999999


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      .|+.|.+|+.++++  .+..+.....++..+.|+|....       +++.++-||.|.|+.+.....
T Consensus       274 kD~~ii~wN~~tgE--vl~~~p~~~nW~fdv~w~pr~P~-------~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  274 KDNRIICWNPNTGE--VLGELPAQGNWCFDVQWCPRNPS-------VMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             CCCCeeEecCCCce--EeeecCCCCcceeeeeecCCCcc-------hhhhheeccceeeeeeecCCc
Confidence            99999999999988  56788888899999999998875       789999999999999987653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=2.6e-21  Score=161.11  Aligned_cols=284  Identities=15%  Similarity=0.199  Sum_probs=197.0

Q ss_pred             eeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccc-cCccCEEEEEec-CCEEEEEeCCCeEEEEecCC
Q 047728          103 IGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFK-SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~-~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~  177 (474)
                      +-.|.+|.+.|+|+.|+ +++|.+|..-|.|++|+++  +....++ .|...|+.+..- ++.+.+-+.|+.+.+|++..
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccC
Confidence            34566999999999998 7789999999999999854  5566677 577888888876 68999999999999999987


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-----C----CEEEEEECCC-cEEEE
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-----Q----NLLYSASWDK-TFKVW  247 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~----~~l~s~s~dg-~i~iw  247 (474)
                      ......                                   |.-.++++.|.+.     +    ..++.-++.. .+.+-
T Consensus        87 s~~i~i-----------------------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~  131 (323)
T KOG0322|consen   87 SAFISI-----------------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ  131 (323)
T ss_pred             cceEEE-----------------------------------eeeeccccccccceeccCCCcchhheecCCcccchhhhh
Confidence            543321                                   2222333333221     0    1111111000 02222


Q ss_pred             EcCCcceeeee----eecCcceeEEEecCC-C---eEEEeeCCCcEEEEEcccCCCcee----eeeeeeeecccccEEEE
Q 047728          248 RTSDYKCLESV----IAHDDAVNSIVAGFD-G---LVFTGSADGTVKVWRRELQGKGTK----HFFSQTLLKQECAVTAL  315 (474)
Q Consensus       248 d~~~~~~~~~~----~~~~~~v~~v~~~~~-~---~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~l  315 (474)
                      |......+...    ....+.+.+..+..+ +   .+++|-++|.+.+||+..+.+...    .........|..+|.++
T Consensus       132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl  211 (323)
T KOG0322|consen  132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL  211 (323)
T ss_pred             ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence            32222122111    123456666664333 2   788899999999999987532111    11234456788999999


Q ss_pred             EEcCCCCEEEEEcCCCcEEEeecCccc--c-ccee--eeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728          316 AISPDAAIVYCGSSDGLVNFWERELNL--S-HGGV--LRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML  390 (474)
Q Consensus       316 ~~~~~~~~l~~~~~dg~i~v~d~~~~~--~-~~~~--~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  390 (474)
                      .+.+.-..=++|+.+..+..|.+....  . +...  ++.-...-+.+.+|++.+|+++.|+.||||..++.+  ++..+
T Consensus       212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--pLAVL  289 (323)
T KOG0322|consen  212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--PLAVL  289 (323)
T ss_pred             eechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC--chhhh
Confidence            999876666778888888898875431  1 1111  112223347788999999999999999999999998  57889


Q ss_pred             cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      +-|.+.|++++|+|+.+        ++|.++.|++|.+|++
T Consensus       290 kyHsagvn~vAfspd~~--------lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  290 KYHSAGVNAVAFSPDCE--------LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhcceeEEEeCCCCc--------hhhhccCCceEEeeec
Confidence            99999999999999988        9999999999999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=8.9e-21  Score=174.66  Aligned_cols=271  Identities=18%  Similarity=0.245  Sum_probs=198.3

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ..+.+|.+.|.+|..+  +.+|++|+.||+||||.+.++.++....                                 -
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------------------------------~  440 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------------------------------F  440 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------------------------------e
Confidence            3578999999999987  8899999999999999999999876654                                 3


Q ss_pred             cCCeeEEEecCCCC--EEEEEECCCcEEEEEcCCc---------------------------------c----eeeeeee
Q 047728          220 FDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDY---------------------------------K----CLESVIA  260 (474)
Q Consensus       220 ~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~---------------------------------~----~~~~~~~  260 (474)
                      .+.|.|++|+|.+.  .|+++- ...+.|.+..-|                                 +    -+.....
T Consensus       441 d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~  519 (733)
T KOG0650|consen  441 DSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK  519 (733)
T ss_pred             cceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe
Confidence            34788999988543  333333 333444432111                                 0    1123345


Q ss_pred             cCcceeEEEecCCC-eEEEeeCC---CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728          261 HDDAVNSIVAGFDG-LVFTGSAD---GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW  336 (474)
Q Consensus       261 ~~~~v~~v~~~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~  336 (474)
                      |...|..+.|+..| +|++...+   ..|.|.++.....      ...+....+.|.++.|+|...+|++++. ..|++|
T Consensus       520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY  592 (733)
T KOG0650|consen  520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY  592 (733)
T ss_pred             cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc------cCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence            78899999999999 77776654   4588888764432      3445566778999999999999888765 679999


Q ss_pred             ecCcccccceeeeecc-eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          337 ERELNLSHGGVLRGHK-LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       337 d~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      |+.........+.+.. ...+++++.|.-|+.|+.|+.++.||+.-... ...++..|...|++|+|++.-.        
T Consensus       593 dL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryP--------  663 (733)
T KOG0650|consen  593 DLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYP--------  663 (733)
T ss_pred             ehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccc--------
Confidence            9987655544444322 34477788899999999999999999986643 3678888999999999999988        


Q ss_pred             EEEEecCCCcEEEEEcc--CCCCCCCCCcccccccCCCCC----CCccccCCC
Q 047728          416 ILYSGSLDKSVKMWRVS--EQAPPLVSTTQQHPLEGHGVA----PNSLPYAPS  462 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~----v~~l~~~p~  462 (474)
                      ++++|+.||++.|+.-.  +.-.......+...+.+|...    |....|||.
T Consensus       664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~  716 (733)
T KOG0650|consen  664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR  716 (733)
T ss_pred             eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence            99999999999998421  111001112466778888766    777789983

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=8.8e-21  Score=159.92  Aligned_cols=249  Identities=19%  Similarity=0.287  Sum_probs=188.4

Q ss_pred             eeeeccCCeeEEEecC-CCCEEEEEECC-------CcEEEEEcCC---------cceeeeee-ecCcceeEEEecCCC-e
Q 047728          215 LWIKHFDAISSLSMSE-DQNLLYSASWD-------KTFKVWRTSD---------YKCLESVI-AHDDAVNSIVAGFDG-L  275 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~-~~~~l~s~s~d-------g~i~iwd~~~---------~~~~~~~~-~~~~~v~~v~~~~~~-~  275 (474)
                      +|..|.++|+.|+-+| +...|+++..+       -.+-||.+..         .+++..+. .+-+.|.|+.|.|++ .
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            4555889999999999 55666666542       2467898753         23444454 455689999999998 5


Q ss_pred             EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcCCCcEEEeecCcccccceeeeecce
Q 047728          276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL  353 (474)
Q Consensus       276 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  353 (474)
                      +++- .|..|.+|++....+............+....++-+|+|  +++.+++. .|+++..||+++..+...+...|..
T Consensus       138 lasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  138 LASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcc
Confidence            5544 499999999987655333333333344667788999999  77777754 6889999999999888888888887


Q ss_pred             eeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          354 AILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       354 ~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      .+..+.++   .-+|++|+.||.|+|||.+..+. ++..+.+|...|.++.|+|....       ++++||.|..|.+|.
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv~el~~HsHWvW~VRfn~~hdq-------LiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEHDQ-------LILSGGSDSAVNLSC  287 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-cccccCCCceEEEEEEecCccce-------EEEecCCCceeEEEe
Confidence            77776664   34789999999999999987765 48899999999999999998764       899999999999997


Q ss_pred             ccCCCCC----------------------CCCCcccccccCCCCCCCccccCC-------CCCcCCceeecc
Q 047728          431 VSEQAPP----------------------LVSTTQQHPLEGHGVAPNSLPYAP-------SFSSQGRICQKR  473 (474)
Q Consensus       431 ~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~l~~~p-------~~s~Dg~~l~~~  473 (474)
                      ...-...                      +.....+.++..|...|.+++|+.       +.|-|||++++.
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence            6432110                      112334557888999999999986       458999999864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.7e-20  Score=164.41  Aligned_cols=293  Identities=15%  Similarity=0.196  Sum_probs=212.6

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--------ccccccc-cCccCEEEEEec--CCEEEEEeCC
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--------REFSGFK-SNSGLVKAIVIS--NEKIFSGHQD  167 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--------~~~~~~~-~h~~~V~~i~~~--~~~l~s~~~d  167 (474)
                      .+.+.+.+|.|.|+++.|+  +++|++|++|..+++|...        +++.... .|...|.|++|+  +..+++|..+
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            3445678999999999998  7899999999999999743        3333333 355889999998  6689999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW  247 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw  247 (474)
                      ++|.+-|+++.+.+......                              ...+.|..+..+|..+.|++.+.++.|.+|
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFI  176 (609)
T ss_pred             ceeEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEE
Confidence            99999999988654322211                              134589999999988999999999999999


Q ss_pred             EcCCcc-eee--eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeee-eeeeecccccEEEEEEcCCC
Q 047728          248 RTSDYK-CLE--SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFF-SQTLLKQECAVTALAISPDA  321 (474)
Q Consensus       248 d~~~~~-~~~--~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~  321 (474)
                      |.+... .+.  .+.........+.|+|..  +|++.+..+-+-+||++.+.......- ...+......-..+.|+|+|
T Consensus       177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            998654 222  222334567788999987  889999999999999987654221111 11111112234678899999


Q ss_pred             CEEEEEcCCCcEEEeecCcccccceeeeecc-------eeeEEEEe-cCCEEEEEeCCCcEEEEECCCCc----------
Q 047728          322 AIVYCGSSDGLVNFWERELNLSHGGVLRGHK-------LAILCLVT-AGNLVFSGSADMSICIWRRKENE----------  383 (474)
Q Consensus       322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-------~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~----------  383 (474)
                      +.|++--....-.+||+....+..... .|.       ..+-++.+ +..-+++|+.+-.|++|.+....          
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCc
Confidence            999887777777788887654432222 221       12222333 33448999999999999874211          


Q ss_pred             -----------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          384 -----------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       384 -----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                                 ...+.++++|.+-++.+.|+|...        +|++.+....++||.--
T Consensus       336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~--------~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN--------LLVSSGVENSFKLWSDH  387 (609)
T ss_pred             chhhCchhheecceeEEEecccccccceeecCCcc--------eEeccchhhheeccccc
Confidence                       012457899999999999999988        89999999999999643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.4e-20  Score=166.87  Aligned_cols=272  Identities=13%  Similarity=0.198  Sum_probs=202.8

Q ss_pred             ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      .+.|++|.|+  ...|++++.|++++||.++.........+.                              -...+|.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~------------------------------l~~fPi~~  262 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH------------------------------LEKFPIQK  262 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee------------------------------eccCccce
Confidence            5689999999  458999999999999999876433211111                              14568999


Q ss_pred             EEecCCCC-EEEEEECCCcEEEEEcCCcceee--eeeecC-cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          226 LSMSEDQN-LLYSASWDKTFKVWRTSDYKCLE--SVIAHD-DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       226 l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~-~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .+|.|+|. .+++++....++.||+.+.+...  .+.++. ..+....+++++ +|+..+..|.|.+....+..-     
T Consensus       263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-----  337 (514)
T KOG2055|consen  263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-----  337 (514)
T ss_pred             eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-----
Confidence            99999998 89999999999999998876533  233333 456777889998 999999999999987665432     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec--ceeeEEEEecCCEEEEEeCCCcEEEEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH--KLAILCLVTAGNLVFSGSADMSICIWR  378 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sgs~dg~i~iwd  378 (474)
                        ......++.|..++|+.+++.|++++.+|.|.+||++...++.......  ....+|.+.++.+||+|+..|.|.|||
T Consensus       338 --i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  338 --ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             --hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence              3334456789999999999999999999999999999886665544322  345578889999999999999999999


Q ss_pred             CCC----CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec--CCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728          379 RKE----NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS--LDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV  452 (474)
Q Consensus       379 ~~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s--~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  452 (474)
                      .++    ..+.++..+..-...|+.++|+++.+        +||.+|  .+..+|+-.+.....-.-....    ...-+
T Consensus       416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q--------iLAiaS~~~knalrLVHvPS~TVFsNfP~~----n~~vg  483 (514)
T KOG2055|consen  416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ--------ILAIASRVKKNALRLVHVPSCTVFSNFPTS----NTKVG  483 (514)
T ss_pred             cchhhccCCCCchhhhhhhheeeeeeeeCcchh--------hhhhhhhccccceEEEeccceeeeccCCCC----CCccc
Confidence            653    33445667777788999999999999        777666  5678999888765221111111    22234


Q ss_pred             CCCccccCCCCCcCCceeec
Q 047728          453 APNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       453 ~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      .|+++    +|||.|-+++.
T Consensus       484 ~vtc~----aFSP~sG~lAv  499 (514)
T KOG2055|consen  484 HVTCM----AFSPNSGYLAV  499 (514)
T ss_pred             ceEEE----EecCCCceEEe
Confidence            47777    66776666554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=5.1e-20  Score=157.71  Aligned_cols=263  Identities=18%  Similarity=0.237  Sum_probs=197.3

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCCccccc--------cc-------cCccCEEEEEec---------CCEEEEEeCCCe
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQREFSG--------FK-------SNSGLVKAIVIS---------NEKIFSGHQDGK  169 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~--------~~-------~h~~~V~~i~~~---------~~~l~s~~~dg~  169 (474)
                      ..++|+|..|++-+.|..+++|++......        +.       .....|...+|-         ..++++.+.|.-
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            346788999999999999999974421111        11       123445555552         347889999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC---CeeEEEecCCCCEEEEEECCCcEEE
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD---AISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      |++||.-+++.......-                              .|.+   +..+++|+|||.+|++| ....|++
T Consensus       135 Ih~wdaftG~lraSy~~y------------------------------dh~de~taAhsL~Fs~DGeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAY------------------------------DHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV  183 (406)
T ss_pred             eeeeeccccccccchhhh------------------------------hhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence            999999998765432211                              1333   34689999999999876 4688999


Q ss_pred             EEc-CCcceeee--ee-----ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728          247 WRT-SDYKCLES--VI-----AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA  316 (474)
Q Consensus       247 wd~-~~~~~~~~--~~-----~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  316 (474)
                      +|+ +.|+....  ..     +..+.+.+++|+|..  .++.|+....+-||.-....      +...+.+|.+.|+.++
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~------pl~llggh~gGvThL~  257 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR------PLQLLGGHGGGVTHLQ  257 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC------ceeeecccCCCeeeEE
Confidence            999 44442221  11     235678899999987  89999999998888765444      3667779999999999


Q ss_pred             EcCCCCEEEEEcC-CCcEEEeecCcccccceeeeecce-----eeEEEEecCCEEEEEeCCCcEEEEECCC-CceEEEEe
Q 047728          317 ISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLRGHKL-----AILCLVTAGNLVFSGSADMSICIWRRKE-NEHICLSM  389 (474)
Q Consensus       317 ~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~  389 (474)
                      |.++|+.|++|.. |-.|.+||++....+...+..|..     -...+.+.+++|++|+.||.|++||++. ++  .+..
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--~~sv  335 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--EVSV  335 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--cccc
Confidence            9999999999876 668999999987655544544443     2356778899999999999999999987 44  2567


Q ss_pred             ecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728          390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD  423 (474)
Q Consensus       390 ~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D  423 (474)
                      +..|...|+.++++|--.        ++++++..
T Consensus       336 ~~~~sd~vNgvslnP~mp--------ilatssGq  361 (406)
T KOG2919|consen  336 TGNYSDTVNGVSLNPIMP--------ILATSSGQ  361 (406)
T ss_pred             cccccccccceecCcccc--------eeeeccCc
Confidence            778999999999999987        88888754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4.5e-20  Score=157.51  Aligned_cols=262  Identities=14%  Similarity=0.133  Sum_probs=180.2

Q ss_pred             EEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          151 VKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       151 V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      -.|+.|+  |.+|++|+.||.|.|||+.+....                                .++.+|..+|++++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------------------------------r~lsaH~~pi~sl~W   73 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------------------------------RMLSAHVRPITSLCW   73 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--------------------------------hhhhccccceeEEEe
Confidence            6788888  899999999999999999987532                                245569999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL  306 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  306 (474)
                      +++|+.|++++.|..|.+||+..|.+++.+. ...+|+...|+|..  .+++.-.+..-.+-++..+..  .........
T Consensus        74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~  150 (405)
T KOG1273|consen   74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDG  150 (405)
T ss_pred             cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCcc
Confidence            9999999999999999999999999988886 47899999999976  444444444444444432111  110111111


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEEEeCCCcEEEEECCCC--
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFSGSADMSICIWRRKEN--  382 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~--  382 (474)
                      .......+..|++.|+++++|...|.+.+||..+.+........  .....+-++..|+.|+.-+.|..||.|+++.-  
T Consensus       151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~  230 (405)
T KOG1273|consen  151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD  230 (405)
T ss_pred             ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence            11222334568999999999999999999999887655333222  22333556778999999999999999998621  


Q ss_pred             -----ceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCCCCCCCcccccccCCC-CC
Q 047728          383 -----EHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAPPLVSTTQQHPLEGHG-VA  453 (474)
Q Consensus       383 -----~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~  453 (474)
                           +......+..  ....-.+++|+.++.        |++.++ .-..++||.-..+..       ...+.|.. ..
T Consensus       231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge--------Yv~a~s~~aHaLYIWE~~~GsL-------VKILhG~kgE~  295 (405)
T KOG1273|consen  231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE--------YVCAGSARAHALYIWEKSIGSL-------VKILHGTKGEE  295 (405)
T ss_pred             cCccCCcChhHHHHHHHhhhhhhheeecCCcc--------EEEeccccceeEEEEecCCcce-------eeeecCCchhh
Confidence                 1111111111  122456788999988        555554 456799999888743       33344433 23


Q ss_pred             CCccccCCC
Q 047728          454 PNSLPYAPS  462 (474)
Q Consensus       454 v~~l~~~p~  462 (474)
                      ...+.|+|.
T Consensus       296 l~DV~whp~  304 (405)
T KOG1273|consen  296 LLDVNWHPV  304 (405)
T ss_pred             eeecccccc
Confidence            445556653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.3e-19  Score=155.62  Aligned_cols=281  Identities=17%  Similarity=0.233  Sum_probs=200.2

Q ss_pred             ccCccCEEEEEec-------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          145 KSNSGLVKAIVIS-------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       145 ~~h~~~V~~i~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ..|..+|..++|+       .+.+++.+.+ .+.+|...........+.-..                           .
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D---------------------------~   86 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYAD---------------------------E   86 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccC---------------------------C
Confidence            4677889999886       3356666555 688888766542221111110                           1


Q ss_pred             eccCCeeEEEecCC----CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728          218 KHFDAISSLSMSED----QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       218 ~h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~  291 (474)
                      .|......++|+-+    ..++|+|+.-|.|+|.|+.++++...+.+|...|+.+.+.|+.  ++++++.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            25556666777652    4578899999999999999999999999999999999999998  99999999999999998


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc--------------------------
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG--------------------------  345 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--------------------------  345 (474)
                      ....   .....-..+|...|.++.|++++.+|++++.|..+++|++....-..                          
T Consensus       167 ~~~C---v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~  243 (385)
T KOG1034|consen  167 TDVC---VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD  243 (385)
T ss_pred             CCeE---EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence            6432   22334567899999999999999999999999999999987331110                          


Q ss_pred             -eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC-CCc-----------eEEEEeecCCccceEEEEEeeC--Ccccc
Q 047728          346 -GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK-ENE-----------HICLSMLTGHSGPVKCLAVEKD--DESLS  410 (474)
Q Consensus       346 -~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~-~~~-----------~~~~~~~~~h~~~v~~l~~~~~--~~~~~  410 (474)
                       ....-|...|-|+.+-|+++++-+-++.|..|... -.+           ...+..+.-....|+-+.|.-|  .+   
T Consensus       244 fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~---  320 (385)
T KOG1034|consen  244 FSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK---  320 (385)
T ss_pred             ccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH---
Confidence             01123555566666679999999999999999872 111           1113334444455666665544  45   


Q ss_pred             ccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                           +||.|...|.|.+||++..+++.. .+..+..  ....|...    +||.||++|+
T Consensus       321 -----~la~gnq~g~v~vwdL~~~ep~~~-ttl~~s~--~~~tVRQ~----sfS~dgs~lv  369 (385)
T KOG1034|consen  321 -----MLALGNQSGKVYVWDLDNNEPPKC-TTLTHSK--SGSTVRQT----SFSRDGSILV  369 (385)
T ss_pred             -----HHhhccCCCcEEEEECCCCCCccC-ceEEecc--ccceeeee----eecccCcEEE
Confidence                 899999999999999998866521 1222221  22334444    8999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.4e-21  Score=188.93  Aligned_cols=226  Identities=15%  Similarity=0.231  Sum_probs=182.1

Q ss_pred             EEEEeeCCCcEEEEeCCc--------cccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccC
Q 047728          122 LLYTGSDSKNIRVWKNQR--------EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLP  190 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~~--------~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  190 (474)
                      +||.|.+||.|.+||..+        .+..+..|.+.|..+.|+   ++.|++|+.||.|.|||+...+......  .  
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~--  157 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--S--  157 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--C--
Confidence            699999999999998543        356678899999999998   6799999999999999998854432211  0  


Q ss_pred             ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCc--ceeE
Q 047728          191 TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD--AVNS  267 (474)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~  267 (474)
                                                ..-.+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+..+..  .+..
T Consensus       158 --------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  158 --------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             --------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence                                      11456899999998 567889999999999999999888887766554  4678


Q ss_pred             EEecCCC--eEEEeeCCC---cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcc
Q 047728          268 IVAGFDG--LVFTGSADG---TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       268 v~~~~~~--~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~  341 (474)
                      +.|+|+.  .+++++.|.   .|.+||+|....     ..+.+..|...|.++.|++.+ .+|++++.|+.|.+|+.+++
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            9999998  777777664   499999986554     456778999999999999955 89999999999999999998


Q ss_pred             cccceeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECCCCc
Q 047728          342 LSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       342 ~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      +.+..+.. ....+..+.+.   ...+++++-||.|.||.+.+..
T Consensus       287 Evl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  287 EVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            77654443 44556555553   4589999999999999997654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=1.5e-19  Score=152.51  Aligned_cols=278  Identities=20%  Similarity=0.258  Sum_probs=196.1

Q ss_pred             eeeeeeeecCcEEEEEEc---CCEEEEeeCC-------CcEEEEeCCccccc-----------cc-cCccCEEEEEec--
Q 047728          102 LIGSLVREEGHIYSLAAA---GDLLYTGSDS-------KNIRVWKNQREFSG-----------FK-SNSGLVKAIVIS--  157 (474)
Q Consensus       102 ~~~~l~~h~~~i~~~~~~---~~~l~tgs~d-------g~v~vwd~~~~~~~-----------~~-~h~~~V~~i~~~--  157 (474)
                      +.+.|+.|.|.|+.++.+   .++|+|+..+       -.+.||...+.+..           +. .+-+.|.|+.|.  
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            345677888999999865   6688877552       13679986543322           22 456689999998  


Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLL  235 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l  235 (474)
                      ++.+++-. |..|.+|+++............                          .-.+|....++-+|+|  +++.+
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss--------------------------~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSS--------------------------ESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeeccc--------------------------ccccccceecccccCCCCccceE
Confidence            44666655 7789999998876531110000                          0012666788889999  77777


Q ss_pred             EEEECCCcEEEEEcCCcceeeee-eecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728          236 YSASWDKTFKVWRTSDYKCLESV-IAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV  312 (474)
Q Consensus       236 ~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  312 (474)
                      ++. .|+++..||+++.++...+ .+|...|..+.|+|+.  .|++|+.||.|++||.+..+.     +...+.+|...|
T Consensus       188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~~HsHWv  261 (370)
T KOG1007|consen  188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-----PVQELPGHSHWV  261 (370)
T ss_pred             EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----cccccCCCceEE
Confidence            765 5899999999998887776 4688999999999997  899999999999999986654     678889999999


Q ss_pred             EEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec
Q 047728          313 TALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT  391 (474)
Q Consensus       313 ~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  391 (474)
                      +++.|+| ..++|++++.|..|.+|....-....++...+...-.           -..|..=++=-+..+.   +.++.
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~-----------e~~dseer~kpL~dg~---l~tyd  327 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES-----------EDEDSEERVKPLQDGQ---LETYD  327 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC-----------cchhhHHhcccccccc---ccccc
Confidence            9999999 4568889999999999976543222222222111000           0001000111122332   56788


Q ss_pred             CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      .|...|.+++|+....       |+||+-+.||++.|=++..
T Consensus       328 ehEDSVY~~aWSsadP-------WiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  328 EHEDSVYALAWSSADP-------WIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccceEEEeeccCCC-------eeEEEeccCceEEeecCCh
Confidence            8999999999998877       4899999999999877654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=3.1e-19  Score=152.95  Aligned_cols=276  Identities=21%  Similarity=0.259  Sum_probs=191.0

Q ss_pred             EEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728          152 KAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS  229 (474)
Q Consensus       152 ~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  229 (474)
                      ..+.|+  |..|++-+.|..+++|++.............. .           .....       .-......|...+|-
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~-~-----------~~~~~-------~r~~eg~tvydy~wY  113 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN-F-----------SKHLS-------YRYQEGETVYDYCWY  113 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc-c-----------cccee-------EEeccCCEEEEEEee
Confidence            346676  67999999999999999876432211000000 0           00000       001122345555554


Q ss_pred             -------CCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCc---ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728          230 -------EDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDD---AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       230 -------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                             |+..++++.+.+.-|++||.-+|+....+.+  |.+   ...+++|+|||.-+.++....|++||+...+...
T Consensus       114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c  193 (406)
T KOG2919|consen  114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC  193 (406)
T ss_pred             eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC
Confidence                   5778999999999999999999998777754  333   3467899999955556678999999994333221


Q ss_pred             e-ee-eeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEe-CC
Q 047728          298 K-HF-FSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGS-AD  371 (474)
Q Consensus       298 ~-~~-~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs-~d  371 (474)
                      . .. ......+..+-+.+++|+| +...+++++....+-||.-..... ..++.+|...|+  ++.++|+.|++|+ .|
T Consensus       194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l~llggh~gGvThL~~~edGn~lfsGaRk~  272 (406)
T KOG2919|consen  194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-LQLLGGHGGGVTHLQWCEDGNKLFSGARKD  272 (406)
T ss_pred             cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-eeeecccCCCeeeEEeccCcCeecccccCC
Confidence            1 11 1112345577899999999 556999999999988887665544 366778988875  5566899999998 47


Q ss_pred             CcEEEEECCCCceEEEEeecCCcc-ceEEEEE--eeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccccc
Q 047728          372 MSICIWRRKENEHICLSMLTGHSG-PVKCLAV--EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLE  448 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~  448 (474)
                      -.|..||++..... +..+..|.+ .=..|.|  .|+++        +|++|+.||.|++||+.....      ....+.
T Consensus       273 dkIl~WDiR~~~~p-v~~L~rhv~~TNQRI~FDld~~~~--------~LasG~tdG~V~vwdlk~~gn------~~sv~~  337 (406)
T KOG2919|consen  273 DKILCWDIRYSRDP-VYALERHVGDTNQRILFDLDPKGE--------ILASGDTDGSVRVWDLKDLGN------EVSVTG  337 (406)
T ss_pred             CeEEEEeehhccch-hhhhhhhccCccceEEEecCCCCc--------eeeccCCCccEEEEecCCCCC------cccccc
Confidence            89999999876543 566777765 3334444  56677        999999999999999988422      334456


Q ss_pred             CCCCCCCccccCCC
Q 047728          449 GHGVAPNSLPYAPS  462 (474)
Q Consensus       449 ~~~~~v~~l~~~p~  462 (474)
                      .++..++.++++|+
T Consensus       338 ~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  338 NYSDTVNGVSLNPI  351 (406)
T ss_pred             cccccccceecCcc
Confidence            67888999988886

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.8e-18  Score=142.71  Aligned_cols=278  Identities=15%  Similarity=0.213  Sum_probs=191.8

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCC------------ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcc
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQ------------REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDAS  181 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~------------~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~  181 (474)
                      .+++|.+++|++|..+|.|.+..+.            ..+..+++|.++|..++|..+.|++|+. |.|+-|........
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es   94 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEES   94 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhh
Confidence            4577889999999999999999633            2345568999999999999999998886 99999988765432


Q ss_pred             eee-eec--ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          182 IHK-RVG--TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       182 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      ... +.-  ..|...+                      .-.-..|+++.+.|..+-++.++.|+.++-||+++|+...++
T Consensus        95 ~~~K~lwe~~~P~~~~----------------------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   95 LATKRLWEVKIPMQVD----------------------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             ccchhhhhhcCccccC----------------------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence            110 000  0000000                      002346889999997777777779999999999999999999


Q ss_pred             eecCcceeEEEe-cCCCeEEEeeCCCcEEEEEcccCCCceeeeee---eeeec-ccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          259 IAHDDAVNSIVA-GFDGLVFTGSADGTVKVWRRELQGKGTKHFFS---QTLLK-QECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       259 ~~~~~~v~~v~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      ++|.+.|.+++- +..+.+++|+.||++|+||.++++........   ..+.. ....|-+++.  +..+|++|+ ...+
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~l  229 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKL  229 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCce
Confidence            999999999987 44459999999999999999876542211110   01111 2234555554  566888664 4579


Q ss_pred             EEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          334 NFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      .+|.++......  ...-...+..+.+..+.+++++..+.|.-|.+..--   ...........+...|+...-.     
T Consensus       230 slwhLrsse~t~--vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl---~a~ip~~s~~c~s~s~~~~p~k-----  299 (325)
T KOG0649|consen  230 SLWHLRSSESTC--VFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVL---QANIPVESTACYSASWQTSPIK-----  299 (325)
T ss_pred             eEEeccCCCceE--EEecccceeEeeeecceEEEeccccceeeeeeccEE---EEeccCCccceeeecccCCceE-----
Confidence            999999876543  234455677778888999999999999999876432   2233333334555555444321     


Q ss_pred             eEEEEEecCCCcEEEE
Q 047728          414 RWILYSGSLDKSVKMW  429 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw  429 (474)
                        +|-.++....+.|+
T Consensus       300 --~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  300 --FISIAGFSNKLHIL  313 (325)
T ss_pred             --EEEecccceeeeee
Confidence              56566666666665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=1.7e-19  Score=168.25  Aligned_cols=268  Identities=13%  Similarity=0.213  Sum_probs=203.5

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      .|+.|+|..|+.+..+ .+.+||.+  ..+..+++|.+.|.+++|+  |+++++|+.|..|.+|.-.-....        
T Consensus        18 ~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--------   88 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--------   88 (1081)
T ss_pred             eEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--------
Confidence            3455678766666544 59999955  5788999999999999998  889999999999999986543221        


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  269 (474)
                                                -..|.+.|.|+.|+|-.+.|++++-. ..-+|......... . .....+.+.+
T Consensus        89 --------------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~Cs  139 (1081)
T KOG1538|consen   89 --------------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCS  139 (1081)
T ss_pred             --------------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEee
Confidence                                      12399999999999998999998864 47788765543322 1 1245678889


Q ss_pred             ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-----CEEEEEcCCCcEEEeecCcccc
Q 047728          270 AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-----AIVYCGSSDGLVNFWERELNLS  343 (474)
Q Consensus       270 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~  343 (474)
                      |..|| +++.|-.+|+|.+-+.....    ........+..++|.+++|+|..     ..+++.....++.+|.+.....
T Consensus       140 WtnDGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I  215 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI  215 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence            99999 99999999999998644222    22344455678899999999953     4778888888888888765433


Q ss_pred             cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728          344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD  423 (474)
Q Consensus       344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D  423 (474)
                      -.....+....+++..++|.+++.|+.|+.+.+|-.+.-   .+.++.....+|+.++..|+++        +++.|+.|
T Consensus       216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv---rLGTvg~~D~WIWtV~~~PNsQ--------~v~~GCqD  284 (1081)
T KOG1538|consen  216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV---RLGTVGEQDSWIWTVQAKPNSQ--------YVVVGCQD  284 (1081)
T ss_pred             cccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe---EEeeccccceeEEEEEEccCCc--------eEEEEEcc
Confidence            222222333445566679999999999999999976543   3667777888999999999999        89999999


Q ss_pred             CcEEEEEccCC
Q 047728          424 KSVKMWRVSEQ  434 (474)
Q Consensus       424 g~i~vw~~~~~  434 (474)
                      |+|..|++-..
T Consensus       285 GTiACyNl~fS  295 (1081)
T KOG1538|consen  285 GTIACYNLIFS  295 (1081)
T ss_pred             CeeehhhhHHh
Confidence            99999998543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=2.1e-19  Score=167.57  Aligned_cols=266  Identities=15%  Similarity=0.151  Sum_probs=201.9

Q ss_pred             CCCCCCCCCCCcCccCCCCCCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCc
Q 047728           71 SSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNS  148 (474)
Q Consensus        71 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~  148 (474)
                      ++..+++-|+.++....+.............++.+|++|++.|+|++++  |+++|+|+.|+.|.+|..+-+-..--.|.
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~   93 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHN   93 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccC
Confidence            5567788888888877665555445555668899999999999999997  99999999999999998654444445799


Q ss_pred             cCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728          149 GLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL  226 (474)
Q Consensus       149 ~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  226 (474)
                      +.|.|+.|+  ...|++++-.. .-+|..+........                                  ....|.++
T Consensus        94 D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~k----------------------------------ss~R~~~C  138 (1081)
T KOG1538|consen   94 DAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHK----------------------------------SSSRIICC  138 (1081)
T ss_pred             CeeeEeecCchHHHhhhcchhh-ccccChhhhhHHhhh----------------------------------hheeEEEe
Confidence            999999999  66888888663 778987765433211                                  34568899


Q ss_pred             EecCCCCEEEEEECCCcEEEEEcCCcceeeeee---ecCcceeEEEecCCC------eEEEeeCCCcEEEEEcccCCCce
Q 047728          227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI---AHDDAVNSIVAGFDG------LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~------~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      +|..||++|+.|-.||+|.+-+- +++....+.   +...+|++++|+|..      .+++.....++.++.+....   
T Consensus       139 sWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---  214 (1081)
T KOG1538|consen  139 SWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---  214 (1081)
T ss_pred             eecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---
Confidence            99999999999999999999864 444433343   367899999999864      68888888999998876321   


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                          ......-+....|+.+.++|.+++.|+.|+.+.+|..+.- .+... ...|-...+.+.|++++++.|+.||+|-.
T Consensus       215 ----Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC  289 (1081)
T KOG1538|consen  215 ----IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC  289 (1081)
T ss_pred             ----ecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence                2222333456789999999999999999999999975432 22111 12344555777899999999999999988


Q ss_pred             EECC
Q 047728          377 WRRK  380 (474)
Q Consensus       377 wd~~  380 (474)
                      |++-
T Consensus       290 yNl~  293 (1081)
T KOG1538|consen  290 YNLI  293 (1081)
T ss_pred             hhhH
Confidence            8763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.3e-20  Score=168.13  Aligned_cols=294  Identities=20%  Similarity=0.279  Sum_probs=218.8

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc---ccccccCccCEEEEEec----CCEEEEEeCCCeEE
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE---FSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIR  171 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~---~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~  171 (474)
                      .+...|..|.|.|+.+.|+  |+.|++|++|..|.+||+...   +....+|...|..-.|-    ...|++++.||.++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            4556788999999999998  999999999999999996543   33345676666655553    45799999999999


Q ss_pred             EEecCCCCcce-eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEc
Q 047728          172 VWKVSSKDASI-HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       172 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~  249 (474)
                      +=.+....... ..                              .+..|.++|..++.-| +...|++++.|+.+.-+|+
T Consensus       213 ~s~i~~t~~~e~t~------------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl  262 (559)
T KOG1334|consen  213 VSEILETGYVENTK------------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL  262 (559)
T ss_pred             eeeeccccceecce------------------------------ecccccCccceeeecCCCCCcccccccccceeeeee
Confidence            98776543322 11                              2234999999999999 4567899999999999999


Q ss_pred             CCcceeeeee---ecCc---ceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCce-----eeeeee-eeecccccEEEE
Q 047728          250 SDYKCLESVI---AHDD---AVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGT-----KHFFSQ-TLLKQECAVTAL  315 (474)
Q Consensus       250 ~~~~~~~~~~---~~~~---~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~-~~~~~~~~v~~l  315 (474)
                      +.......+.   .+..   ....++..|.+  .+++++.|..+++||.+.-....     ..++.. ......-.|+++
T Consensus       263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl  342 (559)
T KOG1334|consen  263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL  342 (559)
T ss_pred             ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence            8776544432   2333   56778888877  89999999999999987543321     111111 122345579999


Q ss_pred             EEcCCCCEEEEEcCCCcEEEeecCcc------------cccceeeeecce--eeEEEE---ecCCEEEEEeCCCcEEEEE
Q 047728          316 AISPDAAIVYCGSSDGLVNFWERELN------------LSHGGVLRGHKL--AILCLV---TAGNLVFSGSADMSICIWR  378 (474)
Q Consensus       316 ~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~~--~v~~~~---~~~~~l~sgs~dg~i~iwd  378 (474)
                      +|+.++.-|+++..|-.|++|....+            ....+.+++|..  .|-.+.   |...|+++|+.-|.|.||+
T Consensus       343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence            99998888888889999999954322            112234667763  344444   4568999999999999999


Q ss_pred             CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      -.+++.  +..+.+-..-|+||.-+|-..        +||++|-|..||||--.+.
T Consensus       423 K~t~ei--i~~MegDr~VVNCLEpHP~~P--------vLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  423 KKTGEI--IRFMEGDRHVVNCLEPHPHLP--------VLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cchhHH--HHHhhcccceEeccCCCCCCc--------hhhccCCccceeeecCCcc
Confidence            999884  455666666899999999988        9999999999999987443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=1.6e-19  Score=161.55  Aligned_cols=205  Identities=17%  Similarity=0.159  Sum_probs=162.8

Q ss_pred             eeeccCCeeEEEecCCC--CEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEE
Q 047728          216 WIKHFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKV  287 (474)
Q Consensus       216 ~~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~i  287 (474)
                      ..-+...|++++|+|..  +++++|..-|+|-+||+.+.    ..+..+..|..+|.++.|+|.+  .+++.+.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            34488999999999943  68888999999999999532    3455677899999999999988  9999999999999


Q ss_pred             EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--e-cCCE
Q 047728          288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--T-AGNL  364 (474)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~-~~~~  364 (474)
                      -|++.....    ...........+..+.|+.+...++.+..=|.+.+||+++.......+.-|...|..+.  | ...+
T Consensus       262 ~D~~~~i~e----~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  262 QDFEGNISE----EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeecchhhH----HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            999754321    11222234556778889888888888888789999999988776666667776775555  4 3678


Q ss_pred             EEEEeCCCcEEEEECCCCceEE--EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          365 VFSGSADMSICIWRRKENEHIC--LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       365 l~sgs~dg~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      |++++.|++.+|||++......  +.....|...|.+..|+|.+.        -|+|.+.|..|+|||..
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--------tl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--------TLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--------ceEeeccCCceEEeecc
Confidence            9999999999999997543211  344557999999999999998        79999999999999984

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=1.1e-20  Score=180.17  Aligned_cols=272  Identities=22%  Similarity=0.343  Sum_probs=208.1

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      +.+..+.+|..+|.|+.|+  +.++++|+.|..++||..++..+..                                ..
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA--------------------------------s~  228 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA--------------------------------SC  228 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc--------------------------------cC
Confidence            3456678999999999998  8899999999999999998887653                                34


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      .||.+.|+.++.+.+..++++++.|..|++|.+.++.++..+.+|++.|++++|+|-.   +.+.||++++||.+.... 
T Consensus       229 rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~-  304 (1113)
T KOG0644|consen  229 RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPR-  304 (1113)
T ss_pred             CCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccccc-
Confidence            5799999999999999999999999999999999999999999999999999999863   788999999999883221 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                       ...+.........-+.++.|..++..+++++.|+.-..|...........+    ..+...+-...+.+++-.+-.+++
T Consensus       305 -~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l----if~t~ssd~~~~~~~ar~~~~~~v  379 (1113)
T KOG0644|consen  305 -IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL----IFVTRSSDLSSIVVTARNDHRLCV  379 (1113)
T ss_pred             -ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccce----EEEeccccccccceeeeeeeEeee
Confidence             111111122234567778888889999999999998888764321110000    001111111356777778889999


Q ss_pred             EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728          377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS  456 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  456 (474)
                      |++.++.  ....+.+|...+..+.++|-+..       +..+++.||...|||+-.+.+...+.      .+|..-+.+
T Consensus       380 wnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~r-------i~msag~dgst~iwdi~eg~pik~y~------~gh~kl~d~  444 (1113)
T KOG0644|consen  380 WNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPR-------IAMSAGYDGSTIIWDIWEGIPIKHYF------IGHGKLVDG  444 (1113)
T ss_pred             eecccch--hhhhhcccccceeeeeecCCCcH-------hhhhccCCCceEeeecccCCcceeee------cccceeecc
Confidence            9999887  46778899999999999998764       67789999999999999986654332      345433333


Q ss_pred             cccCCCCCcCCceee
Q 047728          457 LPYAPSFSSQGRICQ  471 (474)
Q Consensus       457 l~~~p~~s~Dg~~l~  471 (474)
                           .||+||+-++
T Consensus       445 -----kFSqdgts~~  454 (1113)
T KOG0644|consen  445 -----KFSQDGTSIA  454 (1113)
T ss_pred             -----ccCCCCceEe
Confidence                 7999987654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=1.9e-18  Score=171.53  Aligned_cols=294  Identities=19%  Similarity=0.298  Sum_probs=199.6

Q ss_pred             ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcccc---------ccccCccCEEEEEec--CCEEEEEe
Q 047728          100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQREFS---------GFKSNSGLVKAIVIS--NEKIFSGH  165 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~~~---------~~~~h~~~V~~i~~~--~~~l~s~~  165 (474)
                      ..++++|..|+..|..++.+   +.+++||+.||+|++|+..+...         ++.-....+.++...  ++.+|.++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            47899999999999888765   57999999999999999654322         222234556666554  88999999


Q ss_pred             CCCeEEEEecCCCCcceeee-ecccCccceeeeeecCCCCeEEEeeeccceeeeccC-CeeEEEecC-CCC-EEEEEECC
Q 047728          166 QDGKIRVWKVSSKDASIHKR-VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD-AISSLSMSE-DQN-LLYSASWD  241 (474)
Q Consensus       166 ~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~-~~~-~l~s~s~d  241 (474)
                      .||.|++.+++......... ..-.+.                        .. ..+ .|..-+|.. .+. .|+.+...
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n------------------------~~-~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPN------------------------LK-KDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeeccc------------------------cc-CCCceEEeecccccccceeEEEEEec
Confidence            99999999998742111000 000000                        00 112 233333333 333 78888889


Q ss_pred             CcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728          242 KTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS  318 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  318 (474)
                      +.|..||+++......++.  ..+.|++++.+|.+ .+++|+..|.+.+||++.+..     .......+..+++.+..+
T Consensus      1173 ~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred             cceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCcccCCcceEEee
Confidence            9999999998776665543  45789999999998 999999999999999996654     233444556788888887


Q ss_pred             CC---CCEEEEE-c-CCCcEEEeecCcccccceeeeeccee-------------------e-EEEEecCCEEEEEeCCCc
Q 047728          319 PD---AAIVYCG-S-SDGLVNFWERELNLSHGGVLRGHKLA-------------------I-LCLVTAGNLVFSGSADMS  373 (474)
Q Consensus       319 ~~---~~~l~~~-~-~dg~i~v~d~~~~~~~~~~~~~~~~~-------------------v-~~~~~~~~~l~sgs~dg~  373 (474)
                      |-   ....+++ . ..+.|.+|++.++.....+......+                   + .++.--+..+++|+.|..
T Consensus      1248 ~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred             ccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccc
Confidence            72   2444444 4 46789999998885543333321111                   1 222223678999999999


Q ss_pred             EEEEECCCCceE--E--------------------------------------------E--------EeecCCccceEE
Q 047728          374 ICIWRRKENEHI--C--------------------------------------------L--------SMLTGHSGPVKC  399 (474)
Q Consensus       374 i~iwd~~~~~~~--~--------------------------------------------~--------~~~~~h~~~v~~  399 (474)
                      |+.||.......  +                                            .        ..-..|..+|++
T Consensus      1328 IR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itd 1407 (1431)
T KOG1240|consen 1328 IRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITD 1407 (1431)
T ss_pred             eeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhh
Confidence            999998543321  0                                            0        001246778888


Q ss_pred             EEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          400 LAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +++......       +|++++.||.|+||.
T Consensus      1408 ma~~~~~q~-------llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1408 MATLKSEQP-------LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhccCcc-------EEEEecCCCeeeecC
Confidence            887766543       899999999999994

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2e-19  Score=164.98  Aligned_cols=253  Identities=18%  Similarity=0.290  Sum_probs=177.2

Q ss_pred             ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728          143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF  220 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  220 (474)
                      ++..|...|.++.|.  ...|++++.||+|++|+++.........+                        .+.-.|.+|.
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~------------------------epi~tfraH~  344 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV------------------------EPILTFRAHE  344 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce------------------------eeeEEEeccc
Confidence            456788888888887  66899999999999999944221111111                        1123578899


Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCC----------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSD----------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR  289 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd  289 (474)
                      ++|.|+++.+++..+++|+-||+|+.|++..          ......+.+|.+.|+.++++... .|++++.||++++|+
T Consensus       345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE  424 (577)
T ss_pred             CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence            9999999999999999999999999996531          12345678999999999999887 999999999999998


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcccccceeee--------ecceeeEEEEe
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGVLR--------GHKLAILCLVT  360 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------~~~~~v~~~~~  360 (474)
                      ......     +........+...++.+-... .+.++...-+.--+++.+..........        ......+...+
T Consensus       425 ~~~~~~-----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~  499 (577)
T KOG0642|consen  425 PTEESP-----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP  499 (577)
T ss_pred             cCCcCc-----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence            764332     111112222333444443322 2222222222223333333222111100        01122233445


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          361 AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ...+.+++..|+.|+++|..++.  .+.....|...++++++.|++.        +|++++.|+.|++|++...
T Consensus       500 ~~~~~~~~hed~~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~--------~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  500 TADITFTAHEDRSIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGP--------YLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             CCCeeEecccCCceecccccccc--cchheeeccceecceeecCCCc--------eEEeecCCceeehhhccch
Confidence            67899999999999999999988  5677888999999999999999        9999999999999999765

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.1e-17  Score=163.79  Aligned_cols=286  Identities=18%  Similarity=0.296  Sum_probs=193.7

Q ss_pred             EEcCCEEEEeeCCCcEEEEeCC--ccccccccC---ccCEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSN---SGLVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h---~~~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      .+-...++++.+.-.|+|||.+  +.+..|..+   ...|+.+.+-    ...+++|+.||.||||+--.........+ 
T Consensus      1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV- 1151 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV- 1151 (1387)
T ss_pred             cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE-
Confidence            3335678888877789999955  445555443   4568888875    33799999999999997433221100000 


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCccee
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVN  266 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~  266 (474)
                                         ..+..-.....+..+.=.-+.|.....+|++++.-..|+|||.....++..+.. ....|+
T Consensus      1152 -------------------Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1152 -------------------TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred             -------------------EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence                               000000111111222224567777666777777789999999998877776644 344566


Q ss_pred             EEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc--EEEEEEcCCCC-EEEEEcCCCcEEEeecCcc
Q 047728          267 SIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA--VTALAISPDAA-IVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       267 ~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~  341 (474)
                      ++..... | .+++|..||.|++||.+.....   ........|...  |..+.+.+.|- .|++|+.+|.|++||++..
T Consensus      1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             eecccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            6654333 3 9999999999999999875543   234555666666  99999999765 4999999999999999984


Q ss_pred             ccc-ceeeeec-----ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEe----ecCCccceEEEEEeeCCccccc
Q 047728          342 LSH-GGVLRGH-----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM----LTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       342 ~~~-~~~~~~~-----~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      ... .-....|     ....+.++.+...+|+|+. +.|+||++...+.-.+..    +....+.+.|++|+|..-    
T Consensus      1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~---- 1364 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL---- 1364 (1387)
T ss_pred             cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH----
Confidence            222 1112222     2344566678899999998 999999997654221111    112345789999999987    


Q ss_pred             cceEEEEEecCCCcEEEEEccCC
Q 047728          412 EKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                          ++|.|+.|.+|.||.....
T Consensus      1365 ----llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1365 ----LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ----hhhhccCCceEEEeecCCc
Confidence                8999999999999998765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.3e-19  Score=162.25  Aligned_cols=264  Identities=20%  Similarity=0.297  Sum_probs=183.0

Q ss_pred             eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----------ccccccccCccCEEEEEec--CCEEEEEeCCCeE
Q 047728          105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----------REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKI  170 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i  170 (474)
                      ++..|...|..+++.  ...|++|+.||++++|+++          +++.+|.+|.++|.|+++.  ++.+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            788898888888876  6689999999999999873          3577899999999999997  7799999999999


Q ss_pred             EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728          171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~  250 (474)
                      +.|++....-.....                      -...-.+.+.||++.|+.+++++....|++++.||++++|+..
T Consensus       369 ~~w~~p~n~dp~ds~----------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSY----------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             eeeccCCCCCccccc----------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence            999987332111000                      0001125678899999999999999999999999999999987


Q ss_pred             Ccceeeeeee--cCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee-eeeeeecccccEEEEEEcCCCCEEE
Q 047728          251 DYKCLESVIA--HDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF-FSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       251 ~~~~~~~~~~--~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      .... .++..  ..+....+.+-...  ..++...-+.-.+++++......... ...........+..+.++|...+.+
T Consensus       427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~  505 (577)
T KOG0642|consen  427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF  505 (577)
T ss_pred             CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence            6555 33322  12233444443322  22222223333333333222110000 0001111224577888999999999


Q ss_pred             EEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728          326 CGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS  394 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~  394 (474)
                      ++..|+.|+++|..++..+. ....|...+  +++.++|-+|++|+.|+.+++|.+....  ++.....|.
T Consensus       506 ~~hed~~Ir~~dn~~~~~l~-s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~--~~~es~~~r  573 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKILH-SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT--CVLESTAHR  573 (577)
T ss_pred             ecccCCceecccccccccch-heeeccceecceeecCCCceEEeecCCceeehhhccchh--eeecccccc
Confidence            99999999999998886653 344566665  4556689999999999999999997765  455555554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=1.2e-17  Score=141.36  Aligned_cols=248  Identities=16%  Similarity=0.193  Sum_probs=177.7

Q ss_pred             ccCccCEEEEEecC-------CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          145 KSNSGLVKAIVISN-------EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       145 ~~h~~~V~~i~~~~-------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ..|.-+++.+.|.+       +.|+|++ | .+|+|.+...+.....+.. +..                      ..-.
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~-L~~----------------------~kns  147 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSV-LNN----------------------NKNS  147 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhh-hcc----------------------Cccc
Confidence            36888999999972       2455443 4 5999999864322111100 000                      0112


Q ss_pred             eccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcc---eeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728          218 KHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYK---CLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       218 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~  291 (474)
                      .+..++++..|+. +.++|.+.+-|-+..|||++++.   ....+.+|...|..|+|..++  .+++.+.||.||+||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3677999999998 77899999999999999999863   356778999999999999976  89999999999999999


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCC-CcEEEeecCcccccceeeeecceeeEEEEe---cCCEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSD-GLVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVF  366 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~  366 (474)
                      .......   .-.-.....+...++|++ |-+++++-..| ..|.+.|++........+++|...|..+.+   ....|+
T Consensus       228 ~leHSTI---IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hic  304 (364)
T KOG0290|consen  228 SLEHSTI---IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHIC  304 (364)
T ss_pred             ccccceE---EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceee
Confidence            6554221   111122256788899998 55677776555 469999999998888889999999866655   478999


Q ss_pred             EEeCCCcEEEEECCCCce----EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          367 SGSADMSICIWRRKENEH----ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      +++.|..+.|||+...-.    -++.... -.+.|+.+.|++....       .++.+. ++.+.+.
T Consensus       305 taGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~D-------wiai~~-~kkleiL  362 (364)
T KOG0290|consen  305 TAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPD-------WIAICF-GKKLEIL  362 (364)
T ss_pred             ecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCC-------EEEEEe-cCeeeEE
Confidence            999999999999964321    0122222 4568999999976653       566654 3444443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=4.4e-18  Score=150.25  Aligned_cols=285  Identities=19%  Similarity=0.210  Sum_probs=200.8

Q ss_pred             ccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          148 SGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       148 ~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      ..+|..+.|.   .+.|+||+.|..|++|.++....... ..+.                        -...+..|..+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~------------------------y~s~Ls~H~~aV   68 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVE------------------------YLSSLSRHTRAV   68 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEE------------------------EeecccCCccee
Confidence            4568888886   33899999999999999987654321 0110                        113456699999


Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcC--------C--------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEE
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTS--------D--------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVK  286 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~  286 (474)
                      +++.|+|+|.+|++|+.+|.|.+|-..        +        ......+.+|...|..++|+|++ .+++++-|..++
T Consensus        69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~  148 (434)
T KOG1009|consen   69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR  148 (434)
T ss_pred             EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence            999999999999999999999999765        2        12344567899999999999999 899999999999


Q ss_pred             EEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee------------------
Q 047728          287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL------------------  348 (474)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------------------  348 (474)
                      +||+..+.      ....+..|...+..++|.|.++++++-+.|...+.+.+..........                  
T Consensus       149 l~Dv~~G~------l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r  222 (434)
T KOG1009|consen  149 LWDVHAGQ------LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR  222 (434)
T ss_pred             EEEeccce------eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence            99998765      467788999999999999999999999998877776654332211110                  


Q ss_pred             eecce------eeEEEEecCCEEEEEeC----C-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc----
Q 047728          349 RGHKL------AILCLVTAGNLVFSGSA----D-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL----  409 (474)
Q Consensus       349 ~~~~~------~v~~~~~~~~~l~sgs~----d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~----  409 (474)
                      .-|..      .-.+|+|+|.+|++.+.    +     +..++|+...... +...+..-..++..+.|+|---.+    
T Consensus       223 LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r-P~~~lp~~~k~~lavr~~pVy~elrp~~  301 (434)
T KOG1009|consen  223 LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR-PAARLPSPKKPALAVRFSPVYYELRPLS  301 (434)
T ss_pred             eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC-ceeecCCCCcceEEEEeeeeEEEecccc
Confidence            00111      12567788988887642    2     3345666554333 245666666777777777632110    


Q ss_pred             ------cccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          410 ------SREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       410 ------~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                            .-..+.+++.++.| .|.|||.++..+..      ..-.-|=..++.+    +||+||.+|..+|
T Consensus       302 ~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~------~v~nihy~~iTDi----aws~dg~~l~vSS  361 (434)
T KOG1009|consen  302 SEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLA------VVDNIHYSAITDI----AWSDDGSVLLVSS  361 (434)
T ss_pred             ccccccccccceEEEEeecc-eEEEeccccccceE------EEeeeeeeeecce----eecCCCcEEEEec
Confidence                  11234466677655 69999998864432      1223366778888    8899999888765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.5e-16  Score=152.21  Aligned_cols=114  Identities=23%  Similarity=0.370  Sum_probs=96.9

Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC----cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD----YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~  292 (474)
                      .|.-.++|.+++|+++++++|..||.|.+|.--.    ......+.=|...|.++.|+++| .|++|+..|.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3666789999999999999999999999996322    12344566689999999999999 999999999999999987


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                      +++       +.+..-.++|..+.++||+...+....|+.|.+...
T Consensus       283 ~~k-------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  283 GKK-------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             CCc-------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            653       455666889999999999999999999999998865

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=4.7e-18  Score=149.46  Aligned_cols=205  Identities=19%  Similarity=0.302  Sum_probs=161.1

Q ss_pred             eeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC---------ccccccccCccCEEEEEec---CCEEEEEeCCCe
Q 047728          105 SLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ---------REFSGFKSNSGLVKAIVIS---NEKIFSGHQDGK  169 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~---------~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~  169 (474)
                      .+.+|+++|..++|+   ...||+||+|.+|.||+..         +.+..+.+|...|--+.|+   .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            356899999998876   6689999999999999743         4567789999999999998   679999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      |.+|++.+++.....                                 .|.+-|.++.|+.+|.+|++.+.|..|+|||.
T Consensus       156 v~iWnv~tgeali~l---------------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp  202 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL---------------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP  202 (472)
T ss_pred             EEEEeccCCceeeec---------------------------------CCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence            999999999865322                                 29999999999999999999999999999999


Q ss_pred             CCcceeeeeeecCcc-eeEEEecCCCeEEEee----CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728          250 SDYKCLESVIAHDDA-VNSIVAGFDGLVFTGS----ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV  324 (474)
Q Consensus       250 ~~~~~~~~~~~~~~~-v~~v~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  324 (474)
                      ++++.+..-.+|.+. -..+.|..++.+++.+    .+..+-+||.......    ...........|.---|+++.+++
T Consensus       203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl~PFyD~dt~iv  278 (472)
T KOG0303|consen  203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVLLPFYDPDTSIV  278 (472)
T ss_pred             CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc----ceeEEeccCCceEEeeecCCCCEE
Confidence            999999888888753 3344566677555544    4678999997654432    222333445566666788888876


Q ss_pred             EE-EcCCCcEEEeecCcccccce
Q 047728          325 YC-GSSDGLVNFWERELNLSHGG  346 (474)
Q Consensus       325 ~~-~~~dg~i~v~d~~~~~~~~~  346 (474)
                      +. |-.|+.|+.|.+........
T Consensus       279 Yl~GKGD~~IRYyEit~d~P~~h  301 (472)
T KOG0303|consen  279 YLCGKGDSSIRYFEITNEPPFVH  301 (472)
T ss_pred             EEEecCCcceEEEEecCCCceeE
Confidence            65 55699999999887654433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=3.4e-19  Score=170.14  Aligned_cols=276  Identities=22%  Similarity=0.299  Sum_probs=202.9

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      .+.++.|.+|..+|+|..++  |.+++||++|..|+||.  ...++....+|.+.|+.++.+  +-++++++.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            35667889999999999998  99999999999999997  446788899999999999998  4578999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      .+..+..+                                .++.+|+++|++|+|+|-.    +.+.||++++||.+ ..
T Consensus       260 rl~~~~pv--------------------------------svLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~  302 (1113)
T KOG0644|consen  260 RLPDGAPV--------------------------------SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LE  302 (1113)
T ss_pred             ecCCCchH--------------------------------HHHhccccceeeeccCccc----cCCCCCceEecccc-cc
Confidence            99988764                                4567899999999999954    67899999999987 12


Q ss_pred             eeeee----e-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-CCEEEE
Q 047728          254 CLESV----I-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYC  326 (474)
Q Consensus       254 ~~~~~----~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~  326 (474)
                      .+...    + ...+.+..+.+-..+ .+++++.|+.-..|.+....-            +...+.-+..+.+ ..+.++
T Consensus       303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------------~~~~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------------RSNLLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------------hccceEEEecccccccccee
Confidence            11111    1 123455566666666 899999999999997653221            1111111111111 135555


Q ss_pred             EcCCCcEEEeecCcccccceeeeecc--eeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728          327 GSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE  403 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~  403 (474)
                      +-.+-.+.+|++.++... ....+|.  ..++.+.| +.....+++.||.+.|||+-.+.++.... .+ .+.+..-+|+
T Consensus       371 ar~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~g-h~kl~d~kFS  447 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IG-HGKLVDGKFS  447 (1113)
T ss_pred             eeeeeEeeeeecccchhh-hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-cc-cceeeccccC
Confidence            666778889999887544 3444554  44566665 56677889999999999998887654443 44 4567788999


Q ss_pred             eCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ++|.        .++....-|.+.|.....+.
T Consensus       448 qdgt--------s~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  448 QDGT--------SIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             CCCc--------eEecCCCCCceEEeccCCCc
Confidence            9998        67777777888887765543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=2.7e-17  Score=139.16  Aligned_cols=230  Identities=16%  Similarity=0.166  Sum_probs=169.1

Q ss_pred             eccCCeeEEEecCCC-----CEEEEEECCCcEEEEEcCCcc----eeeee-----eecCcceeEEEecCCC--eEEEeeC
Q 047728          218 KHFDAISSLSMSEDQ-----NLLYSASWDKTFKVWRTSDYK----CLESV-----IAHDDAVNSIVAGFDG--LVFTGSA  281 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~-----~~l~s~s~dg~i~iwd~~~~~----~~~~~-----~~~~~~v~~v~~~~~~--~l~~~~~  281 (474)
                      .|.-+++.+.|.|+.     .+|++.  +..+++|.+...+    +...+     ..+..++++..|+.-.  ++.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            388899999999975     345554  3569999987422    11112     1345688999998765  8999999


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcccccceeeee-c-ceeeEEE
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGVLRG-H-KLAILCL  358 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~-~~~v~~~  358 (474)
                      |-+..|||++.+..   ......+..|...|..++|...+ +.+++.+.||.+++||++....-.-+... . ..+.+.+
T Consensus       172 DTTCTiWdie~~~~---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  172 DTTCTIWDIETGVS---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL  248 (364)
T ss_pred             cCeEEEEEEeeccc---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence            99999999987522   22456788999999999999854 58899999999999999876443222222 1 3445666


Q ss_pred             Ee---cCCEEEEEeCC-CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          359 VT---AGNLVFSGSAD-MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       359 ~~---~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ++   +-+++|+-..| ..|.|.|++.... .+..+.+|.+.|++++|.|....       .|+|+++|..+.+||+...
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~-------hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSS-------HICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCc-------eeeecCCcceEEEEecccc
Confidence            65   46788876655 5799999987654 37899999999999999998875       8999999999999999876


Q ss_pred             CCCCCCC-cccccccCCCCCCCccccCCCC
Q 047728          435 APPLVST-TQQHPLEGHGVAPNSLPYAPSF  463 (474)
Q Consensus       435 ~~~~~~~-~~~~~~~~~~~~v~~l~~~p~~  463 (474)
                      ....... ....   .-.+.|+.+.|.+..
T Consensus       321 ~~~~~~dPilay---~a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  321 PRENGEDPILAY---TAGGEVNQIQWSSSQ  347 (364)
T ss_pred             cccCCCCchhhh---hccceeeeeeecccC
Confidence            4422111 1111   145679999998764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=1.2e-15  Score=148.52  Aligned_cols=284  Identities=29%  Similarity=0.508  Sum_probs=210.8

Q ss_pred             eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc---cccccccCc-cCEEEEEe-c--CC-EEEEEeC-CCeEEEE
Q 047728          105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR---EFSGFKSNS-GLVKAIVI-S--NE-KIFSGHQ-DGKIRVW  173 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~---~~~~~~~h~-~~V~~i~~-~--~~-~l~s~~~-dg~i~vw  173 (474)
                      .+..|...|.++.+.  +..++.++.|+.+.+|+...   ....+..+. ..+..+.+ .  +. .++..+. |+.+++|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            567888999998887  77888899999999999553   345555533 36666666 3  44 4555444 9999999


Q ss_pred             ecCC-CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcCC
Q 047728          174 KVSS-KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTSD  251 (474)
Q Consensus       174 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~  251 (474)
                      ++.. ....                                ..+..|...|.+++|+|++..+++++. |+.+++|++..
T Consensus       140 ~~~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         140 DLSTPGKLI--------------------------------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             EecCCCeEE--------------------------------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence            9987 2211                                233459999999999999998888885 99999999999


Q ss_pred             cceeeeeeecCcceeEEEecCCC-eEEEe-eCCCcEEEEEcccCCCceeeeeee-eeecccccEEEEEEcCCCCEEEEEc
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQ-TLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      +..+..+..|...|.++++.|++ .++++ +.|+.|++||.....      ... ....|.... ...|++++..+++++
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  260 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK------LLRSTLSGHSDSV-VSSFSPDGSLLASGS  260 (466)
T ss_pred             CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc------EEeeecCCCCcce-eEeECCCCCEEEEec
Confidence            88899999999999999999988 34444 999999999776222      122 455666654 338999999999999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      .|+.+++|+.............|...+.++  .+++..+++++.|+.+.+||..............|...+..+.| ...
T Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  339 (466)
T COG2319         261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD  339 (466)
T ss_pred             CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC
Confidence            999999999987655222225566666554  45578888899999999999887764322223478888999999 433


Q ss_pred             -ccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          407 -ESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       407 -~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                       ..       ++..+..|+.+.+|++....
T Consensus       340 ~~~-------~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         340 GSL-------LVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCE-------EEEeecCCCcEEeeecCCCc
Confidence             31       34444788999999998764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=9.9e-18  Score=147.46  Aligned_cols=206  Identities=17%  Similarity=0.265  Sum_probs=159.1

Q ss_pred             eeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCc
Q 047728          215 LWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGT  284 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~  284 (474)
                      .+.+|+.+|..++|+| +...||+|++|.+|.||.+-..       +.+..+.+|...|--++|+|.-  .|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3467999999999999 6788999999999999998643       4567788999999999999986  8999999999


Q ss_pred             EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce---eeEEEEec
Q 047728          285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL---AILCLVTA  361 (474)
Q Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~~  361 (474)
                      |.+||+.++..      ... ..|..-|.+++|+.+|.+|++.+.|..|+|||.+++..+..- .+|.+   .-.-|--+
T Consensus       156 v~iWnv~tgea------li~-l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  156 VSIWNVGTGEA------LIT-LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLAS  227 (472)
T ss_pred             EEEEeccCCce------eee-cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEecc
Confidence            99999987654      222 339999999999999999999999999999999988766443 44543   23445557


Q ss_pred             CCEEEEEe---CCCcEEEEECCCCceE-EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          362 GNLVFSGS---ADMSICIWRRKENEHI-CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       362 ~~~l~sgs---~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      +.++-+|-   .+..+-+||..+.+.. ....+.. .+.|.-=-|.+|..-       +.++|-.|+.||.|.+....+
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~i-------vYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSI-------VYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCE-------EEEEecCCcceEEEEecCCCc
Confidence            77555554   5789999998765432 2334443 344554556677662       445666899999999987654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.5e-16  Score=153.77  Aligned_cols=284  Identities=17%  Similarity=0.253  Sum_probs=203.4

Q ss_pred             ecCcEEE--EEEcCCEEEEeeCCCcEEEEe-CC-----ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCC
Q 047728          109 EEGHIYS--LAAAGDLLYTGSDSKNIRVWK-NQ-----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       109 h~~~i~~--~~~~~~~l~tgs~dg~v~vwd-~~-----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      |.-.++|  ++|+++++|+|..||.|.+|. .+     .....+.-|...|.+++|+  |.+|++|+.+|.+.+|.++++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence            4443455  555699999999999999996 22     2355677899999999998  889999999999999999998


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      +...                                 +..-..+|..+.++||+.+.+....|+.|.+....+.+...++
T Consensus       284 ~kqf---------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI  330 (792)
T KOG1963|consen  284 KKQF---------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI  330 (792)
T ss_pred             Cccc---------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence            7432                                 2235678999999999999999999999999988666554444


Q ss_pred             eec-----------CcceeEEEecCC-CeEEEeeCCCcEEEEEcccCCCceeeeeeeeee-----cccccEEEEEEcCCC
Q 047728          259 IAH-----------DDAVNSIVAGFD-GLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL-----KQECAVTALAISPDA  321 (474)
Q Consensus       259 ~~~-----------~~~v~~v~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~  321 (474)
                      .+-           .+-.+.+++.|. +.++..+..|.|.+||+-+............-.     .+.-.+++++.+..|
T Consensus       331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g  410 (792)
T KOG1963|consen  331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG  410 (792)
T ss_pred             cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence            331           334567788884 488888999999999987654432211111111     123457888888889


Q ss_pred             CEEEEEcC--------CC--cEEEeecCccc----ccceeeeecceee--EEEEe--cCCEEEEEeCCCcEEEEECCCC-
Q 047728          322 AIVYCGSS--------DG--LVNFWERELNL----SHGGVLRGHKLAI--LCLVT--AGNLVFSGSADMSICIWRRKEN-  382 (474)
Q Consensus       322 ~~l~~~~~--------dg--~i~v~d~~~~~----~~~~~~~~~~~~v--~~~~~--~~~~l~sgs~dg~i~iwd~~~~-  382 (474)
                      .++++.-.        ||  .+++|-.....    ....+..+|....  +++..  ....+++++.||.++||-+... 
T Consensus       411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~  490 (792)
T KOG1963|consen  411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDS  490 (792)
T ss_pred             eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccc
Confidence            99988632        33  46678654332    2223445666544  33332  3448999999999999988322 


Q ss_pred             -------ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          383 -------EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       383 -------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                             ...|...-.-|..++++++|+.||.         +++.+.|++|.+||..+.
T Consensus       491 n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs---------lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  491 NIYKKSSNWTCKAIGSYHKTPITALCFSQDGS---------LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             ccCcCccceEEeeeeccccCcccchhhcCCCc---------EEEEecCCEEEEecCCCh
Confidence                   2334444445889999999999997         667778899999999883

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=152.97  Aligned_cols=216  Identities=17%  Similarity=0.228  Sum_probs=152.8

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--cc-ccccccCccCEEEEEec----CCEEEEEeCCCeE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--RE-FSGFKSNSGLVKAIVIS----NEKIFSGHQDGKI  170 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~-~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i  170 (474)
                      ..+-+.|.||+|.|+|++|+  |.+|++|++|-.+.|||.-  +. ...-.+|.+.|.++.|-    +..+++|+.|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            45567899999999999998  9999999999999999943  33 33457899999999995    5689999999999


Q ss_pred             EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEc
Q 047728          171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRT  249 (474)
Q Consensus       171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~  249 (474)
                      +++|++..+.-....                      -.......|..|...|..|+..|++ +.+.++++||+|+-+|+
T Consensus       120 ~lfdl~~~~~~~~d~----------------------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi  177 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDH----------------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI  177 (758)
T ss_pred             EEEeccccccccccc----------------------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence            999998643211000                      0001113456699999999999987 88999999999999999


Q ss_pred             CCcce-ee---------eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc-----e------------eee
Q 047728          250 SDYKC-LE---------SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG-----T------------KHF  300 (474)
Q Consensus       250 ~~~~~-~~---------~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~-----~------------~~~  300 (474)
                      +.... -.         .+...--...++.++|..  +|++|+.|-..++||.+...+.     .            ..+
T Consensus       178 REph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf  257 (758)
T KOG1310|consen  178 REPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF  257 (758)
T ss_pred             cCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence            86321 11         111112345788889887  9999999999999995422110     0            000


Q ss_pred             eeeeee---c-c---cccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728          301 FSQTLL---K-Q---ECAVTALAISPDAAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       301 ~~~~~~---~-~---~~~v~~l~~~~~~~~l~~~~~dg~i~v~d  337 (474)
                      ....+.   + .   ...++-++|+|+|..|++.-....|+++|
T Consensus       258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd  301 (758)
T KOG1310|consen  258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD  301 (758)
T ss_pred             cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence            000110   0 0   11256788999999888877777788887

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.4e-17  Score=143.95  Aligned_cols=287  Identities=16%  Similarity=0.178  Sum_probs=205.2

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      +.+.+|.+.|+++.|+  +++|++|+.|-.+++|.++..-.... +.++.                    ..      ..
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~--------------------~~------~~  103 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV--------------------ME------HP  103 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee--------------------cc------Cc
Confidence            3467899999999998  67999999999999999875422111 11110                    00      12


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      |...|.|++|...+..+++|..+++|.+.|+++.+.+..+..  ..+.|+.+..+|.. .+++.+.++.|.+||.+....
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence            778999999999999999999999999999999888877643  23589999999876 999999999999999986653


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceee---eecce-----eeEEEEecCCEEE
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVL---RGHKL-----AILCLVTAGNLVF  366 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~l~  366 (474)
                      ....+   ...........+.|+|. ..+|++.+..+-+.+||++.........   .+-..     --.-|+++|+.++
T Consensus       184 ~~~~~---~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m  260 (609)
T KOG4227|consen  184 PISLV---LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM  260 (609)
T ss_pred             CCcee---eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence            32222   22334556788999995 5678888899999999998764332111   11111     2255777888888


Q ss_pred             EEeCCCcEEEEECCCCceEEEEeecCCc-------cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC--
Q 047728          367 SGSADMSICIWRRKENEHICLSMLTGHS-------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP--  437 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~--  437 (474)
                      +--....-.+||+-+.+.. +..+. |.       ..+.+++|..|.         -+++|+.+-.|.+|.+......  
T Consensus       261 siRR~~~P~~~D~~S~R~~-V~k~D-~N~~GY~N~~T~KS~~F~~D~---------~v~tGSD~~~i~~WklP~~~ds~G  329 (609)
T KOG4227|consen  261 SIRRGKCPLYFDFISQRCF-VLKSD-HNPNGYCNIKTIKSMTFIDDY---------TVATGSDHWGIHIWKLPRANDSYG  329 (609)
T ss_pred             hhhccCCCEEeeeecccce-eEecc-CCCCcceeeeeeeeeeeecce---------eeeccCcccceEEEecCCCccccC
Confidence            8776667778888775532 22222 22       257778888775         4999999999999998653211  


Q ss_pred             --------------CCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          438 --------------LVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       438 --------------~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                                    .........+.||..-++.+    .|+|...+|++
T Consensus       330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV----RF~~H~~~l~S  374 (609)
T KOG4227|consen  330 FTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV----RFSQHNNLLVS  374 (609)
T ss_pred             ccccCcchhhCchhheecceeEEEecccccccce----eecCCcceEec
Confidence                          12334556788999999988    56666666654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=5.8e-17  Score=156.18  Aligned_cols=236  Identities=15%  Similarity=0.213  Sum_probs=167.2

Q ss_pred             ccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcce--eee----eeecCcceeEEEecCCC---eEEEeeCCCcEEEE
Q 047728          219 HFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKC--LES----VIAHDDAVNSIVAGFDG---LVFTGSADGTVKVW  288 (474)
Q Consensus       219 h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~--~~~----~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iw  288 (474)
                      -...|.|++|+| +..+++.|+.+|.|.+||++.+..  ...    ...|..++..+.|..+.   .+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            567899999999 778889999999999999987665  222    23588999999998765   59999999999999


Q ss_pred             EcccCCCceeeeeeeeee------cccccEEEEEEcC-CCCEEEEEcCCCcEEEee---cCccc----ccceeeeeccee
Q 047728          289 RRELQGKGTKHFFSQTLL------KQECAVTALAISP-DAAIVYCGSSDGLVNFWE---RELNL----SHGGVLRGHKLA  354 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d---~~~~~----~~~~~~~~~~~~  354 (474)
                      +++.........+.....      .....+++++|.+ +-..+++|+.+|.|..-+   .+...    ........|.+.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            987544322222222222      3345789999999 567889999999988733   22222    222344566777


Q ss_pred             eEEEEec---CCEEEEEeCCCcEEEEECC-CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          355 ILCLVTA---GNLVFSGSADMSICIWRRK-ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       355 v~~~~~~---~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +.++..+   .+.+++++ |.+++||... ...  ++..+..+...|++++|+|-...       +|+++..||.|.+||
T Consensus       401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~--Pl~~~~~~~~~v~~vaWSptrpa-------vF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS--PLLSLDSSPDYVTDVAWSPTRPA-------VFATVDGDGNLDIWD  470 (555)
T ss_pred             eEeeecCCCccceeeeec-cceeEeccccCCCC--cchhhhhccceeeeeEEcCcCce-------EEEEEcCCCceehhh
Confidence            7777654   44555555 9999999887 333  35677778888999999999875       899999999999999


Q ss_pred             ccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          431 VSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      +......+.     .....+....+.+    .++++|++|+.+
T Consensus       471 Ll~~~~~Pv-----~s~~~~~~~l~~~----~~s~~g~~lavG  504 (555)
T KOG1587|consen  471 LLQDDEEPV-----LSQKVCSPALTRV----RWSPNGKLLAVG  504 (555)
T ss_pred             hhccccCCc-----cccccccccccee----ecCCCCcEEEEe
Confidence            987644332     1222222222333    667778888754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=7.1e-17  Score=158.27  Aligned_cols=279  Identities=19%  Similarity=0.249  Sum_probs=187.6

Q ss_pred             EEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          151 VKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       151 V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      -..+.++  ...++++...-.|+|||.+.++....+..+..                             -...|+.+.+
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~-----------------------------~~t~Vs~l~l 1117 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF-----------------------------PDTRVSDLEL 1117 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCC-----------------------------CCCccceeee
Confidence            3344454  56788888777899999998876543322211                             3456888888


Q ss_pred             cC--CCCEEEEEECCCcEEEEEcC-C----cceeeeeeec-------CcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728          229 SE--DQNLLYSASWDKTFKVWRTS-D----YKCLESVIAH-------DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       229 ~~--~~~~l~s~s~dg~i~iwd~~-~----~~~~~~~~~~-------~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      -.  |..++++|+.||.|+||+-. +    .+.+..+.+-       .+.-.-+.|.... .|++++.-..|+|||....
T Consensus      1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E 1197 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE 1197 (1387)
T ss_pred             ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc
Confidence            65  56789999999999999642 2    2333322221       1111224565544 7888887899999998754


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccc--cceeeeeccee--eEEEEec--CC-EE
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLS--HGGVLRGHKLA--ILCLVTA--GN-LV  365 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~--v~~~~~~--~~-~l  365 (474)
                      ..     ......+.+..|+++.-+. .|+.+++|..||.|++||.+....  .....+.|...  |+.++.+  |- .|
T Consensus      1198 ~~-----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~el 1272 (1387)
T KOG1517|consen 1198 QV-----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGEL 1272 (1387)
T ss_pred             ee-----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcce
Confidence            33     2233344566788877655 579999999999999999886644  55566777766  7666553  33 59


Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeecCCc--c-ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCc
Q 047728          366 FSGSADMSICIWRRKENEHICLSMLTGHS--G-PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTT  442 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~--~-~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~  442 (474)
                      ++|+.||.|++||++.........+..|.  + .++++..+++..        ++|+|+. +.|+||++....... ...
T Consensus      1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap--------iiAsGs~-q~ikIy~~~G~~l~~-~k~ 1342 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP--------IIASGSA-QLIKIYSLSGEQLNI-IKY 1342 (1387)
T ss_pred             eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC--------eeeecCc-ceEEEEecChhhhcc-ccc
Confidence            99999999999999874322233333443  3 599999999998        9999998 999999997543222 112


Q ss_pred             ccccccCCCCCCCccccCC------CCCcCCceeecc
Q 047728          443 QQHPLEGHGVAPNSLPYAP------SFSSQGRICQKR  473 (474)
Q Consensus       443 ~~~~~~~~~~~v~~l~~~p------~~s~Dg~~l~~~  473 (474)
                      ....+....+.+.+++|||      +-+.|..+.+++
T Consensus      1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             CcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            2222333445678999998      446666666554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=1.1e-15  Score=148.86  Aligned_cols=266  Identities=30%  Similarity=0.503  Sum_probs=200.4

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCC-cceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKD-ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      .....|...+..+.+.  +..++.++.|+.+.+|+..... ....                                +..
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------------------~~~  106 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS--------------------------------LEG  106 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE--------------------------------Eec
Confidence            3556788999999998  6678888899999999998875 1111                                111


Q ss_pred             cc-CCeeEEEe-cCCCC-EEEEEEC-CCcEEEEEcCC-cceeeeeeecCcceeEEEecCCC-eEEEeeC-CCcEEEEEcc
Q 047728          219 HF-DAISSLSM-SEDQN-LLYSASW-DKTFKVWRTSD-YKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-DGTVKVWRRE  291 (474)
Q Consensus       219 h~-~~V~~l~~-~~~~~-~l~s~s~-dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-dg~i~iwd~~  291 (474)
                      +. ..+..+.+ .+++. .++..+. |+.+.+||... ......+..|...|..+.+++++ .+++++. |+.+++|+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (466)
T COG2319         107 LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR  186 (466)
T ss_pred             cCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC
Confidence            11 35666666 77776 5555444 99999999988 78888899999999999999999 7777775 9999999998


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceeeeeccee-eEEEEecCCEEEEEe
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVLRGHKLA-ILCLVTAGNLVFSGS  369 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sgs  369 (474)
                      ...      .......|...|.+++|+|++. .+++++.|+.|++||...+......+.+|... +..+++++.++++++
T Consensus       187 ~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (466)
T COG2319         187 TGK------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS  260 (466)
T ss_pred             CCc------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEec
Confidence            622      3455556899999999999998 55555999999999888554443245566555 457888888999999


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG  449 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~  449 (474)
                      .|+.+++|+...... .+..+..|...|.++.|.|++.        .+++++.|+.+++|++..........     ...
T Consensus       261 ~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~  326 (466)
T COG2319         261 SDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSPDGK--------LLASGSSDGTVRLWDLETGKLLSSLT-----LKG  326 (466)
T ss_pred             CCCcEEEeeecCCCc-EEEEEecCCccEEEEEECCCCC--------EEEEeeCCCcEEEEEcCCCceEEEee-----ecc
Confidence            999999999987664 2333377899999999999777        67779999999999887763322111     235


Q ss_pred             CCCCCCcccc
Q 047728          450 HGVAPNSLPY  459 (474)
Q Consensus       450 ~~~~v~~l~~  459 (474)
                      |...+..+.|
T Consensus       327 ~~~~~~~~~~  336 (466)
T COG2319         327 HEGPVSSLSF  336 (466)
T ss_pred             cCCceEEEEE
Confidence            5556666655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=9.7e-16  Score=144.13  Aligned_cols=269  Identities=11%  Similarity=0.188  Sum_probs=168.2

Q ss_pred             EEEeeCCCcEEEEeCC--c---cccccccCccCEEEEEec--CCEEEEEe-CCCeEEEEecCC-CCcceeeeecccCccc
Q 047728          123 LYTGSDSKNIRVWKNQ--R---EFSGFKSNSGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSS-KDASIHKRVGTLPTFK  193 (474)
Q Consensus       123 l~tgs~dg~v~vwd~~--~---~~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~  193 (474)
                      +++...++.|++|+..  .   .+..+. +.+....++++  +++|++++ .++.|.+|+++. +........       
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-------   76 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-------   76 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-------
Confidence            3444678999999963  1   223332 33456677776  66776654 578899999973 221111100       


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcCC-cc---eeeeeeecCcceeEE
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTSD-YK---CLESVIAHDDAVNSI  268 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~v  268 (474)
                                              ........++++|++++|++++. ++.|.+|++.+ +.   .+..+. +......+
T Consensus        77 ------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~  131 (330)
T PRK11028         77 ------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSA  131 (330)
T ss_pred             ------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEe
Confidence                                    02224568999999999988874 78999999964 22   222222 23446778


Q ss_pred             EecCCC-eE-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcc--c-
Q 047728          269 VAGFDG-LV-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELN--L-  342 (474)
Q Consensus       269 ~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~--~-  342 (474)
                      +++|++ .+ ++...++.|.+||+...+....................++|+|++++++++.. ++.|.+|+++..  . 
T Consensus       132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            899998 44 55566799999999753321100000001112345678999999999988876 899999999732  1 


Q ss_pred             ccceeeeec------c--eeeEEEEecCCEEEEEeC-CCcEEEEECCCCc--eEEEEeecCCccceEEEEEeeCCccccc
Q 047728          343 SHGGVLRGH------K--LAILCLVTAGNLVFSGSA-DMSICIWRRKENE--HICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       343 ~~~~~~~~~------~--~~v~~~~~~~~~l~sgs~-dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      .........      .  ..-+.++|++++++++.. ++.|.+|++....  ...+...... .....++|+|+++    
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~----  286 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGK----  286 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCC----
Confidence            111111111      0  112667899999999864 7899999996432  1112222211 2456789999998    


Q ss_pred             cceEEEEEec-CCCcEEEEEccC
Q 047728          412 EKRWILYSGS-LDKSVKMWRVSE  433 (474)
Q Consensus       412 ~~~~~l~s~s-~Dg~i~vw~~~~  433 (474)
                          +|+++. .+++|.+|++..
T Consensus       287 ----~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        287 ----YLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             ----EEEEEEccCCcEEEEEEcC
Confidence                666555 589999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=1.4e-17  Score=154.78  Aligned_cols=246  Identities=16%  Similarity=0.183  Sum_probs=175.1

Q ss_pred             EEEecCCEEEE--EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC
Q 047728          153 AIVISNEKIFS--GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE  230 (474)
Q Consensus       153 ~i~~~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~  230 (474)
                      .++-++.+++.  ++..|.|-||++.....+....+..+                            -....|+++.|.|
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~WdP  637 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWDP  637 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccCC
Confidence            33344444443  45678999999986543322111110                            1455799999999


Q ss_pred             -CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          231 -DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       231 -~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                       |...|+++++||.|++|.+..+       .....+..|...|+.+.|+|--  .|++++.|-+|++||++....     
T Consensus       638 FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----  712 (1012)
T KOG1445|consen  638 FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----  712 (1012)
T ss_pred             CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----
Confidence             8889999999999999998653       3445678899999999999976  899999999999999987653     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee---eecceeeEEEEecCCEEEEEeCC----Cc
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL---RGHKLAILCLVTAGNLVFSGSAD----MS  373 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~sgs~d----g~  373 (474)
                       ...+.+|.+.|..++|+|+|+.+++.+.||+|++|+.+........-   .+..+.-+-+..+|+++++.+.|    ..
T Consensus       713 -~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQ  791 (1012)
T KOG1445|consen  713 -YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQ  791 (1012)
T ss_pred             -hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhh
Confidence             56788999999999999999999999999999999988775543322   23445557778899998887755    56


Q ss_pred             EEEEECCCCceEEEEeecCCccc-eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGP-VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV  439 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~  439 (474)
                      |.+||.++-....+.+..-...+ +.--.+.+|       ...+|++|-.|..|.+|.+-...+...
T Consensus       792 v~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D-------s~~lfltGKGD~~v~~yEv~~esPy~l  851 (1012)
T KOG1445|consen  792 VQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD-------SNVLFLTGKGDRFVNMYEVIYESPYLL  851 (1012)
T ss_pred             hhhhhhhhccCCcceeeeecccCccccccccCC-------CceEEEecCCCceEEEEEecCCCceee
Confidence            88888765431112211111111 011112233       334899999999999999987665443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=1.9e-16  Score=152.62  Aligned_cols=272  Identities=14%  Similarity=0.157  Sum_probs=191.6

Q ss_pred             CCcEEEEeCCcccc--ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728          129 SKNIRVWKNQREFS--GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS  203 (474)
Q Consensus       129 dg~v~vwd~~~~~~--~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (474)
                      ++.+.||+......  ..-.-...|.++.|+   +..++.|..+|.|.+||+..+.........                
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls----------------  284 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS----------------  284 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc----------------
Confidence            34799999665421  122245678999987   779999999999999999987653211111                


Q ss_pred             CeEEEeeeccceeeeccCCeeEEEecCCC--CEEEEEECCCcEEEEEcCCcce-ee-----eee------ecCcceeEEE
Q 047728          204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKC-LE-----SVI------AHDDAVNSIV  269 (474)
Q Consensus       204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~-~~-----~~~------~~~~~v~~v~  269 (474)
                                ..--.|..+|+.+.|..+.  .-|++++.||.|+.|+++.... ..     ...      .....++++.
T Consensus       285 ----------~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~  354 (555)
T KOG1587|consen  285 ----------ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK  354 (555)
T ss_pred             ----------cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe
Confidence                      0112399999999998744  4499999999999998875432 11     111      1124678889


Q ss_pred             ecCCC--eEEEeeCCCcEEEEEcccCCCce--eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728          270 AGFDG--LVFTGSADGTVKVWRRELQGKGT--KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG  345 (474)
Q Consensus       270 ~~~~~--~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  345 (474)
                      |.+..  .+++|+.+|.|.--.........  ..........|.++|+++.++|=+..++..+.|.++++|.......+.
T Consensus       355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl  434 (555)
T KOG1587|consen  355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL  434 (555)
T ss_pred             eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence            98876  89999999999874432211111  112244667789999999999965544444449999999987443443


Q ss_pred             eeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728          346 GVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       346 ~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      ..+..+...++++.+.   ...++++..||.|.|||+......++....-+....+.+.|++.++        +|+.|..
T Consensus       435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~--------~lavGd~  506 (555)
T KOG1587|consen  435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK--------LLAVGDA  506 (555)
T ss_pred             hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc--------EEEEecC
Confidence            4445555556555443   5688899999999999997665445555555677788889999898        9999999


Q ss_pred             CCcEEEEEccCC
Q 047728          423 DKSVKMWRVSEQ  434 (474)
Q Consensus       423 Dg~i~vw~~~~~  434 (474)
                      .|.+.+|++...
T Consensus       507 ~G~~~~~~l~~~  518 (555)
T KOG1587|consen  507 NGTTHILKLSES  518 (555)
T ss_pred             CCcEEEEEcCch
Confidence            999999999754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=6e-16  Score=132.94  Aligned_cols=205  Identities=14%  Similarity=0.103  Sum_probs=159.1

Q ss_pred             eecCcEEEEEEc--CCEEEEeeCCCcEEEEeC-----CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC-C
Q 047728          108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKN-----QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS-S  177 (474)
Q Consensus       108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~-----~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~-~  177 (474)
                      .-.++|+|.+++  +..+|++.....|.||..     -+...+++.|...|++|.|.  .+.|++|+.|..-+||... .
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            345789999988  568999999999999962     24678899999999999998  6799999999999999984 3


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee--
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL--  255 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--  255 (474)
                      +.....                              -++..+...++++.|+|.++.|++|+....|.||-++..+--  
T Consensus        88 ~~Wkpt------------------------------lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   88 GTWKPT------------------------------LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             Ceeccc------------------------------eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence            332211                              234558899999999999999999999999999987654322  


Q ss_pred             --eeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC------------ceeeeeeeeeecccccEEEEEEcCC
Q 047728          256 --ESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK------------GTKHFFSQTLLKQECAVTALAISPD  320 (474)
Q Consensus       256 --~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~  320 (474)
                        +.-+.+...|.++.|+|++ ++++|+.|+..++|..-....            .....+........+.+..+.|+|+
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence              1223467789999999999 899999999999996421110            0001112222356788999999999


Q ss_pred             CCEEEEEcCCCcEEEeecCccc
Q 047728          321 AAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       321 ~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      |..|+-.+.|..+.+-|.....
T Consensus       218 G~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  218 GNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCEeeEecCCCceEEeecCCCc
Confidence            9999999999999999876664

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=6.1e-17  Score=135.26  Aligned_cols=280  Identities=16%  Similarity=0.182  Sum_probs=184.5

Q ss_pred             ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          139 REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      .++..++.|.+.|+++.|. +++|++|..-|.|++|++.+.......+.                               
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~-------------------------------   53 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL-------------------------------   53 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhh-------------------------------
Confidence            3456677999999999998 78999999999999999998765533221                               


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCC-cEEEEEcc-----
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADG-TVKVWRRE-----  291 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg-~i~iwd~~-----  291 (474)
                      .|...|+.+.--|+ ..+.+-+.|..+.+|++.-...+.   .|.-.++++.|.+-. +...+... .+-.++-+     
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfS-l~~~~k~~eqll~yp~rgsde~  128 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFS-LVKKPKNSEQLLEYPSRGSDET  128 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE---Eeeeeccccccccce-eccCCCcchhheecCCcccchh
Confidence            27778888888886 578888999999999987644332   233344444443321 11111111 11111111     


Q ss_pred             ----cCCCceeeeeeeeeecccccEEEEEEcC-CC--CEEEEEcCCCcEEEeecCcccccce---------eeeecceee
Q 047728          292 ----LQGKGTKHFFSQTLLKQECAVTALAISP-DA--AIVYCGSSDGLVNFWERELNLSHGG---------VLRGHKLAI  355 (474)
Q Consensus       292 ----~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~--~~l~~~~~dg~i~v~d~~~~~~~~~---------~~~~~~~~v  355 (474)
                          .+................+.+.+..+.- ++  -++++|.++|.+.+||+.++.....         -...|..++
T Consensus       129 h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv  208 (323)
T KOG0322|consen  129 HKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV  208 (323)
T ss_pred             hhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence                0111111111222233445677776544 23  2567888999999999988633222         233677888


Q ss_pred             EEEEec--CCEEEEEeCCCcEEEEECCCC--ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          356 LCLVTA--GNLVFSGSADMSICIWRRKEN--EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       356 ~~~~~~--~~~l~sgs~dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      +++..+  -+.=++|+.+..+..|.+...  ....-....-....|..+.+-||++        ++||++.|++||||..
T Consensus       209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K--------IlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK--------ILATAGWDHRIRVYSW  280 (323)
T ss_pred             eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc--------EEeecccCCcEEEEEe
Confidence            888775  344567788888999988643  2211222333345689999999999        9999999999999999


Q ss_pred             cCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          432 SEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      ++.       .++..+..|...|+++    +|+||..+++.+
T Consensus       281 rtl-------~pLAVLkyHsagvn~v----Afspd~~lmAaa  311 (323)
T KOG0322|consen  281 RTL-------NPLAVLKYHSAGVNAV----AFSPDCELMAAA  311 (323)
T ss_pred             ccC-------CchhhhhhhhcceeEE----EeCCCCchhhhc
Confidence            998       4556778899999999    566665555544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=7.8e-15  Score=137.99  Aligned_cols=232  Identities=14%  Similarity=0.200  Sum_probs=146.3

Q ss_pred             CCeeEEEecCCCCEEEEEE-CCCcEEEEEcC-Ccce--eeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEEcccCC
Q 047728          221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTS-DYKC--LESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQG  294 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~  294 (474)
                      .....++++|++++|++++ .++.|.+|++. +++.  +.... .......++++|++ .+++++ .++.|.+|++...+
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            4566889999999988765 57889999986 3332  22222 23456789999999 555554 48999999986432


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccc-------eeeeecceeeEEEEecCCEEE
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHG-------GVLRGHKLAILCLVTAGNLVF  366 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~-------~~~~~~~~~v~~~~~~~~~l~  366 (474)
                      ....  .... ..+......++++|+++++++++ .++.|.+||+++...+.       ....+....-+.+++++++++
T Consensus       114 ~~~~--~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        114 IPVA--PIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCCC--ceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence            2111  1111 12234567789999999886555 56899999997632221       111233334478889999998


Q ss_pred             EEeC-CCcEEEEECCC--CceEEEEeecCC------ccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCC
Q 047728          367 SGSA-DMSICIWRRKE--NEHICLSMLTGH------SGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAP  436 (474)
Q Consensus       367 sgs~-dg~i~iwd~~~--~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~  436 (474)
                      ++.. ++.|.+|++..  ++...+..+..+      ......+.++|+++        +|+++. .++.|.+|++.....
T Consensus       191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~--------~lyv~~~~~~~I~v~~i~~~~~  262 (330)
T PRK11028        191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR--------HLYACDRTASLISVFSVSEDGS  262 (330)
T ss_pred             EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC--------EEEEecCCCCeEEEEEEeCCCC
Confidence            8876 89999999973  333233333221      12234688999998        677764 578999999976422


Q ss_pred             CCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          437 PLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       437 ~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      ..   .....+.. ...+..+    .++|||+.|..
T Consensus       263 ~~---~~~~~~~~-~~~p~~~----~~~~dg~~l~v  290 (330)
T PRK11028        263 VL---SFEGHQPT-ETQPRGF----NIDHSGKYLIA  290 (330)
T ss_pred             eE---EEeEEEec-cccCCce----EECCCCCEEEE
Confidence            11   11111111 1122333    78889988764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.9e-15  Score=124.97  Aligned_cols=232  Identities=18%  Similarity=0.236  Sum_probs=170.3

Q ss_pred             cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728          157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY  236 (474)
Q Consensus       157 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  236 (474)
                      .+++|++|..+|.|-+..+...........+..+                      ....++|..+|..++|..  .+|+
T Consensus        21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~----------------------iv~eqahdgpiy~~~f~d--~~Ll   76 (325)
T KOG0649|consen   21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK----------------------IVPEQAHDGPIYYLAFHD--DFLL   76 (325)
T ss_pred             cceEEEEecCCCeEEEEEehhhhccccCCCCCcc----------------------eeeccccCCCeeeeeeeh--hhee
Confidence            4789999999999999988754322111111100                      012256999999999983  4677


Q ss_pred             EEECCCcEEEEEcCCcce------eeee--eecC-----cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          237 SASWDKTFKVWRTSDYKC------LESV--IAHD-----DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       237 s~s~dg~i~iwd~~~~~~------~~~~--~~~~-----~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      +|+ ||.|+-|..+....      +..+  ..|.     -.|+++...|.. -++.++.|+.++-||++.+.      +.
T Consensus        77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~------i~  149 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR------IQ  149 (325)
T ss_pred             ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE------EE
Confidence            766 59999997654322      1111  1122     357888888776 66666699999999999765      57


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee--------eeec-ceeeEEEEecCCEEEEEeCCCc
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV--------LRGH-KLAILCLVTAGNLVFSGSADMS  373 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------~~~~-~~~v~~~~~~~~~l~sgs~dg~  373 (474)
                      ..+.+|...|.++.--.....+++|++||++++||.++.+....+        +++| ...+.|+.-+..+|++|+ .-.
T Consensus       150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~  228 (325)
T KOG0649|consen  150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPK  228 (325)
T ss_pred             EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCc
Confidence            889999999999999777778889999999999999988665433        2222 245788888999999887 457


Q ss_pred             EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.+|.++..+..++..+.+   +|..+.|..|          .+++++..+.|.-|.+..
T Consensus       229 lslwhLrsse~t~vfpipa---~v~~v~F~~d----------~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFPIPA---RVHLVDFVDD----------CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eeEEeccCCCceEEEeccc---ceeEeeeecc----------eEEEeccccceeeeeecc
Confidence            9999999998777776665   5777888776          688888888999998764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.7e-15  Score=146.98  Aligned_cols=220  Identities=14%  Similarity=0.096  Sum_probs=147.0

Q ss_pred             eccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEe-eCCCcEEEEEccc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG-SADGTVKVWRREL  292 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~-~~dg~i~iwd~~~  292 (474)
                      .|...+.+.+|+|+++.|+.++.+   ..|++||+.+++... +....+....++|+||+ .|+.+ ..+|.+.||.+..
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            367789999999999999887754   369999998875422 22222334568999999 56654 4688877775543


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ....     ...+..+...+...+|+|+++.|+..+ .++...+|+++......... .+......++|+|++|+..+.+
T Consensus       280 ~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~  353 (429)
T PRK01742        280 NGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGD  353 (429)
T ss_pred             CCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCC
Confidence            2221     223344556688899999999776554 57888888765432222222 2222345688999999888776


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG  451 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  451 (474)
                      + +.+||+.+++...+.  ..+  ....+.|+|+++        +|+.++.++.+.+|.+....     ....+.+..|.
T Consensus       354 ~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~--------~i~~~s~~g~~~~l~~~~~~-----G~~~~~l~~~~  415 (429)
T PRK01742        354 N-VVKQDLTSGSTEVLS--STF--LDESPSISPNGI--------MIIYSSTQGLGKVLQLVSAD-----GRFKARLPGSD  415 (429)
T ss_pred             C-EEEEECCCCCeEEec--CCC--CCCCceECCCCC--------EEEEEEcCCCceEEEEEECC-----CCceEEccCCC
Confidence            5 666999887643221  122  235678999999        88988899999998875321     13455666777


Q ss_pred             CCCCccccCCC
Q 047728          452 VAPNSLPYAPS  462 (474)
Q Consensus       452 ~~v~~l~~~p~  462 (474)
                      +.+..++|+|.
T Consensus       416 g~~~~p~wsp~  426 (429)
T PRK01742        416 GQVKFPAWSPY  426 (429)
T ss_pred             CCCCCcccCCC
Confidence            77777766654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=5.4e-14  Score=123.37  Aligned_cols=227  Identities=14%  Similarity=0.151  Sum_probs=166.3

Q ss_pred             cEEEEEEc--CCEEEEeeCCCcEEEEeCCccc--cccccCccCEEEEEecCCEEEEEeCCC--eEEEEecCCCCcceeee
Q 047728          112 HIYSLAAA--GDLLYTGSDSKNIRVWKNQREF--SGFKSNSGLVKAIVISNEKIFSGHQDG--KIRVWKVSSKDASIHKR  185 (474)
Q Consensus       112 ~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~--~~~~~h~~~V~~i~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~  185 (474)
                      .+..+.|+  ...|..|+.|| -++|+.....  .........|..+-|+...++..+.+.  .+++.++.....+....
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~   85 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF   85 (391)
T ss_pred             ceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe
Confidence            45566666  44788899998 6788644322  222234456777788888877666554  37888877665433222


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee---cC
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA---HD  262 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~  262 (474)
                                                       -..+|.++.++.  ++|+++-.+. |+|||+++.+.++++..   +.
T Consensus        86 ---------------------------------fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~  129 (391)
T KOG2110|consen   86 ---------------------------------FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP  129 (391)
T ss_pred             ---------------------------------cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCc
Confidence                                             345788888864  4677776655 99999999999988865   34


Q ss_pred             cceeEEEecCCC-eEEEe--eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc-EEEeec
Q 047728          263 DAVNSIVAGFDG-LVFTG--SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL-VNFWER  338 (474)
Q Consensus       263 ~~v~~v~~~~~~-~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~v~d~  338 (474)
                      ..+.++.+++.+ +++.-  ...|.|.+||.....      ....+..|++.+.+++|+++|.+||++++.|+ |+||.+
T Consensus       130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             cceEeeccCCCCceEEecCCCCCceEEEEEcccce------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence            456666666666 55543  346899999987554      35677799999999999999999999999997 789999


Q ss_pred             Ccccccceeeeecc---eeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          339 ELNLSHGGVLRGHK---LAILCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       339 ~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      ..+..+..+.+|..   ...++|++++++|++.+..++|+||.++.
T Consensus       204 ~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  204 PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99988877766654   22367778899999999999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.6e-16  Score=140.11  Aligned_cols=196  Identities=19%  Similarity=0.258  Sum_probs=152.1

Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      .+++|+.+|..|++++.||++|||+..+...+.....|...|.++.|+||+ .|++-+.| ..+||+.+.+.....    
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~----  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR----  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh----
Confidence            789999999999999999999999988888888888999999999999999 88888999 999999987632111    


Q ss_pred             eeeecccccEEEEEEcCCC---C--EEEEEcCCCcEEEeecCccc-----ccceeeeec-ceeeEEEEecCCEEEEEeCC
Q 047728          303 QTLLKQECAVTALAISPDA---A--IVYCGSSDGLVNFWERELNL-----SHGGVLRGH-KLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~---~--~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~-~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ............+.|+.++   .  .++.....+.|+.||+....     ...+....+ ....++++.+|++++.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            1113334456667777766   2  23333445567776654322     122222333 56678888999999999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      |.|.|++..+.+.. ...-+.|...|+.+.|+|+.+        ++++.+.|..+.|..+.-
T Consensus       303 GsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr--------~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSR--------YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcC--------cccccccCCceeEEEEee
Confidence            99999999888754 445678999999999999999        899999999999998876

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.1e-16  Score=135.04  Aligned_cols=194  Identities=15%  Similarity=0.225  Sum_probs=153.4

Q ss_pred             CEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC-C--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-
Q 047728          233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-G--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-  308 (474)
Q Consensus       233 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-  308 (474)
                      ..++++...|.|++||..+++.+..++++...++.+.|..+ +  .+.+++.||+|++||+|...+..    ......+ 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a----~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA----RISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh----heeccCCC
Confidence            56888889999999999999999999999999999998875 3  89999999999999999766532    1222223 


Q ss_pred             cccEEEEEEcCCCCEEEEEcC----CCcEEEeecCcccc-cceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECC
Q 047728          309 ECAVTALAISPDAAIVYCGSS----DGLVNFWERELNLS-HGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~  380 (474)
                      ..+..+++....++.+++|..    +-.|.+||.+.... +......|...|+++.+   +.++|++|+.||.|.|||+.
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            356778888878889998864    66799999998877 66667788877766554   47899999999999999997


Q ss_pred             CCce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          381 ENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       381 ~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      .... -.+...-.|...|.++.|..++-.       .|.+-+...+..+|+++.+.+.
T Consensus       197 ~d~EeDaL~~viN~~sSI~~igw~~~~yk-------rI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  197 KDNEEDALLHVINHGSSIHLIGWLSKKYK-------RIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             CCcchhhHHHhhcccceeeeeeeecCCcc-------eEEEEEccCceeEEEccCCChh
Confidence            5421 123333457788999999988732       4888889999999999987643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=1.2e-15  Score=139.39  Aligned_cols=197  Identities=20%  Similarity=0.257  Sum_probs=148.7

Q ss_pred             CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728          232 QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC  310 (474)
Q Consensus       232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (474)
                      ...|+.++.||.+.+.+ +.++....+.+|.+.+.+-.|+||| -|++++.||.|++|.....       +..++.....
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-------LRStl~Q~~~  146 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-------LRSTVVQNEE  146 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-------HHHHHhhcCc
Confidence            45788899999999987 5677788889999999999999999 8999999999999975421       2345566778


Q ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEE
Q 047728          311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLS  388 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~  388 (474)
                      +|.|++|.|+.+.++.+ ..+.+.+=.+.....+ -..+.|.+-+++++++  .+++++|++|-..+|||-....   +.
T Consensus       147 ~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~-i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~---Lf  221 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFC-QGGHISIKPLAANSKI-IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN---LF  221 (737)
T ss_pred             eeEEEEECCCCCceEEe-cCCeEEEeecccccce-eEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc---cc
Confidence            99999999987655544 3345666555544333 3567899999888874  7899999999999999987654   66


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR  468 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~  468 (474)
                      .-..|..+|++++|.|+ .        .++.++. .++|   ++..               ..+.|    |+-+||+||.
T Consensus       222 ~S~~~ey~ITSva~npd-~--------~~~v~S~-nt~R---~~~p---------------~~GSi----fnlsWS~DGT  269 (737)
T KOG1524|consen  222 TSAAEEYAITSVAFNPE-K--------DYLLWSY-NTAR---FSSP---------------RVGSI----FNLSWSADGT  269 (737)
T ss_pred             cCChhccceeeeeeccc-c--------ceeeeee-eeee---ecCC---------------Cccce----EEEEEcCCCc
Confidence            77889999999999999 4        4665554 3444   2221               12223    4458899998


Q ss_pred             eeecc
Q 047728          469 ICQKR  473 (474)
Q Consensus       469 ~l~~~  473 (474)
                      -++.+
T Consensus       270 Q~a~g  274 (737)
T KOG1524|consen  270 QATCG  274 (737)
T ss_pred             eeecc
Confidence            77654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.7e-15  Score=143.88  Aligned_cols=231  Identities=15%  Similarity=0.075  Sum_probs=158.7

Q ss_pred             CCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCC
Q 047728          129 SKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKP  202 (474)
Q Consensus       129 dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (474)
                      +..|.+||.. .....+..|...+....|+  +++|+.++.+   ..|++||+.+++......                 
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------  245 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------  245 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence            4689999853 3345567788889999998  6678877644   369999998765321110                 


Q ss_pred             CCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEE--EcCCcceeeeeeecCcceeEEEecCCC-eEE-
Q 047728          203 SNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-  277 (474)
Q Consensus       203 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-  277 (474)
                                      .......++|+||++.|+.++ .+|.+.||  |+.+++ ...+..+...+....|+||+ .|+ 
T Consensus       246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f  308 (429)
T PRK01742        246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILF  308 (429)
T ss_pred             ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEE
Confidence                            111233689999999888765 67766555  665555 44555667778899999999 444 


Q ss_pred             EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE
Q 047728          278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC  357 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~  357 (474)
                      +...+|...||++........     .. .+..  ....|+|+++.|+..+.++ +.+||+.++... ............
T Consensus       309 ~s~~~g~~~I~~~~~~~~~~~-----~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~~~~~~~  378 (429)
T PRK01742        309 TSDRSGSPQVYRMSASGGGAS-----LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTFLDESPS  378 (429)
T ss_pred             EECCCCCceEEEEECCCCCeE-----Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCCCCCCce
Confidence            555678999998865433211     11 2222  4578999999998887765 556998776432 121222334467


Q ss_pred             EEecCCEEEEEeCCCcEEEEECC--CCceEEEEeecCCccceEEEEEeeC
Q 047728          358 LVTAGNLVFSGSADMSICIWRRK--ENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       358 ~~~~~~~l~sgs~dg~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ++|+|++|+.++.++.+.+|++.  .++  ....+..|.+.+...+|+|-
T Consensus       379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~--~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        379 ISPNGIMIIYSSTQGLGKVLQLVSADGR--FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECCCC--ceEEccCCCCCCCCcccCCC
Confidence            89999999999999988888763  333  45677788888999999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=6.4e-15  Score=134.82  Aligned_cols=256  Identities=16%  Similarity=0.163  Sum_probs=170.4

Q ss_pred             eecCcEEEEEEc-CCEEEEeeCCCcEEEEe-CC-ccccccccCccCEE------EEEec----CCEEEEEeCCCeEEEEe
Q 047728          108 REEGHIYSLAAA-GDLLYTGSDSKNIRVWK-NQ-REFSGFKSNSGLVK------AIVIS----NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       108 ~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd-~~-~~~~~~~~h~~~V~------~i~~~----~~~l~s~~~dg~i~vwd  174 (474)
                      .|...|.|+.+. ..-++..++|..+.+|. .. .......--..-|.      .....    .+.++.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            455566677776 33455556666666664 22 22221111111111      11111    35799999999998876


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      -...-.                                 .....|.++|.+-.|+|+|.-|+++++||.|++|. ++|-.
T Consensus        92 k~~rVE---------------------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML  137 (737)
T KOG1524|consen   92 KSARVE---------------------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML  137 (737)
T ss_pred             ccchhh---------------------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence            433211                                 11234999999999999999999999999999998 56655


Q ss_pred             eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          255 LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      ..++.....+|+|++|.|+.  .+++.  .+.+.|=-+....      .......|.+-|.++.|++..+++++|++|-.
T Consensus       138 RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k  209 (737)
T KOG1524|consen  138 RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANS------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR  209 (737)
T ss_pred             HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccc------ceeEEeccCcEEEEeecCccccceeecCCcee
Confidence            55565667899999999998  44443  3455554444332      25667889999999999999999999999999


Q ss_pred             EEEeecCcccccceeeeecceeeEEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728          333 VNFWERELNLSHGGVLRGHKLAILCLVTAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      .++||.........  ..|.-++++++++. ..++.++ -++++             .-....+.|..++|++||.    
T Consensus       210 fKvWD~~G~~Lf~S--~~~ey~ITSva~npd~~~~v~S-~nt~R-------------~~~p~~GSifnlsWS~DGT----  269 (737)
T KOG1524|consen  210 FKIWDAQGANLFTS--AAEEYAITSVAFNPEKDYLLWS-YNTAR-------------FSSPRVGSIFNLSWSADGT----  269 (737)
T ss_pred             EEeecccCcccccC--Chhccceeeeeeccccceeeee-eeeee-------------ecCCCccceEEEEEcCCCc----
Confidence            99999875544333  34555555555442 4444444 22232             1223567899999999998    


Q ss_pred             cceEEEEEecCCCcEEEE
Q 047728          412 EKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw  429 (474)
                          .++.|...|.+.+=
T Consensus       270 ----Q~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  270 ----QATCGTSTGQLIVA  283 (737)
T ss_pred             ----eeeccccCceEEEe
Confidence                78888888876553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.2e-15  Score=138.20  Aligned_cols=249  Identities=16%  Similarity=0.176  Sum_probs=165.9

Q ss_pred             cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ....+.+|.+.|+|+.|+  |..|++|+.|-.+.|||.-..+.....                               -.
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI-------------------------------~T   90 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI-------------------------------ST   90 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------------------------------ec
Confidence            345678999999999998  889999999999999998765543322                               24


Q ss_pred             eccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCC----------cceeeeeeecCcceeEEEecCCC--eEEEeeCCC
Q 047728          218 KHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSD----------YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADG  283 (474)
Q Consensus       218 ~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg  283 (474)
                      +|...|.++.|-|  +..++++|..|..|+++|+..          .+....+..|...|..|+..|++  .+.+++.||
T Consensus        91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG  170 (758)
T KOG1310|consen   91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG  170 (758)
T ss_pred             ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence            5999999999999  567899999999999999974          23344566789999999999988  899999999


Q ss_pred             cEEEEEcccCCCceee----eeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728          284 TVKVWRRELQGKGTKH----FFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL  358 (474)
Q Consensus       284 ~i~iwd~~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~  358 (474)
                      +|+-+|++........    .........--...++.++| +..+|++|+.|-..++||.+........-.     ....
T Consensus       171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~-----~~~~  245 (758)
T KOG1310|consen  171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG-----TMNT  245 (758)
T ss_pred             ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc-----cccC
Confidence            9999999864332111    01111222234578999999 557899999999999999754322211100     0000


Q ss_pred             EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728          359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL  438 (474)
Q Consensus       359 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~  438 (474)
                      .|-       -.++.|+-|.....+.. ...+......++-++|+|+|..       +|++-+.+ .|+++++...+.+.
T Consensus       246 ~pp-------~~~~cv~yf~p~hlkn~-~gn~~~~~~~~t~vtfnpNGtE-------lLvs~~gE-hVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  246 CPP-------KDCRCVRYFSPGHLKNS-QGNLDRYITCCTYVTFNPNGTE-------LLVSWGGE-HVYLFDVNEDKSPT  309 (758)
T ss_pred             CCC-------cccchhheecCccccCc-ccccccceeeeEEEEECCCCcE-------EEEeeCCe-EEEEEeecCCCCce
Confidence            100       01122222211100000 0000001123677889999874       66666554 69999999887665


Q ss_pred             CC
Q 047728          439 VS  440 (474)
Q Consensus       439 ~~  440 (474)
                      .+
T Consensus       310 ~y  311 (758)
T KOG1310|consen  310 PY  311 (758)
T ss_pred             ee
Confidence            43

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=1.9e-14  Score=143.75  Aligned_cols=262  Identities=15%  Similarity=0.248  Sum_probs=175.5

Q ss_pred             EeC-CccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEee
Q 047728          135 WKN-QREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR  210 (474)
Q Consensus       135 wd~-~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (474)
                      |+. +..+..+..|...|..++.+   +.+++||+.||+|++|+...-.......                         
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------- 1088 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------- 1088 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee-------------------------
Confidence            552 34567788899999999887   4689999999999999987543210000                         


Q ss_pred             eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc--c-----eeeeeeec-CcceeEE-EecCC--C-eEEE
Q 047728          211 HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY--K-----CLESVIAH-DDAVNSI-VAGFD--G-LVFT  278 (474)
Q Consensus       211 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~~v-~~~~~--~-~l~~  278 (474)
                      ....+|......+.++...+.++.+|.++.||.|++.++.-.  +     +....+.+ .+.+..+ ++...  . .++.
T Consensus      1089 rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy 1168 (1431)
T KOG1240|consen 1089 RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY 1168 (1431)
T ss_pred             eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE
Confidence            000123335678999999999999999999999999998652  1     11112222 2333333 33322  2 7888


Q ss_pred             eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--E
Q 047728          279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--L  356 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~  356 (474)
                      +..-+.|..||++......    ........+.|++++.+|.+.+++.|+..|.+.+||++-+..+.....++...+  +
T Consensus      1169 ~T~~~~iv~~D~r~~~~~w----~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1169 ATDLSRIVSWDTRMRHDAW----RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred             EEeccceEEecchhhhhHH----hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence            8899999999998654321    122334467899999999999999999999999999998877766666666665  3


Q ss_pred             EEEe---cCCEEEE-Ee-CCCcEEEEECCCCceEEEEeecCC-c------------------cceEEEEEeeCCcccccc
Q 047728          357 CLVT---AGNLVFS-GS-ADMSICIWRRKENEHICLSMLTGH-S------------------GPVKCLAVEKDDESLSRE  412 (474)
Q Consensus       357 ~~~~---~~~~l~s-gs-~dg~i~iwd~~~~~~~~~~~~~~h-~------------------~~v~~l~~~~~~~~~~~~  412 (474)
                      ++.+   .....++ ++ ..+.|.+|++.++...  .++... .                  -......+...+.     
T Consensus      1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~--~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~----- 1317 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ--TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG----- 1317 (1431)
T ss_pred             EeeccCCCCceEEEecccCCCceeeeecccCcce--EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-----
Confidence            3333   2244444 44 5789999999988532  222211 0                  0111122222222     


Q ss_pred             ceEEEEEecCCCcEEEEEccCCC
Q 047728          413 KRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       413 ~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                         ++++|+.|..|+.||.....
T Consensus      1318 ---~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1318 ---FLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             ---eeeecCCccceeeccCCCcc
Confidence               89999999999999987653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.9e-15  Score=136.82  Aligned_cols=275  Identities=16%  Similarity=0.219  Sum_probs=196.5

Q ss_pred             ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ...+..|.+.|..|.|+  ++.|++|+.|..|.+||+..+.....+.                               .+
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------------------------------SG  183 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-------------------------------SG  183 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-------------------------------cc
Confidence            44577899999999998  8999999999999999999887654332                               24


Q ss_pred             ccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc-e--eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728          219 HFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK-C--LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~  291 (474)
                      |...|....|-|  +...+++++.||.|++=.+.... +  ...+..|.++|.-++.-|+.  .|.+++.|+.+.-+|++
T Consensus       184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr  263 (559)
T KOG1334|consen  184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR  263 (559)
T ss_pred             cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence            888887778888  45789999999999987664322 2  34456799999999999988  89999999999999998


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCccccc------cee-----eeecceeeEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSH------GGV-----LRGHKLAILCLV  359 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~------~~~-----~~~~~~~v~~~~  359 (474)
                      .........+........-....++.+|.. ..+++++.|..+++||.+.-...      ...     .......|.|+.
T Consensus       264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~  343 (559)
T KOG1334|consen  264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV  343 (559)
T ss_pred             cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence            765544333222111112367889999954 58999999999999997643221      111     112234455555


Q ss_pred             e--cCCEEEEEeCCCcEEEEECCCCce----------EEE-EeecCCcc--ceEEEEEe-eCCccccccceEEEEEecCC
Q 047728          360 T--AGNLVFSGSADMSICIWRRKENEH----------ICL-SMLTGHSG--PVKCLAVE-KDDESLSREKRWILYSGSLD  423 (474)
Q Consensus       360 ~--~~~~l~sgs~dg~i~iwd~~~~~~----------~~~-~~~~~h~~--~v~~l~~~-~~~~~~~~~~~~~l~s~s~D  423 (474)
                      +  ++.-|++...|-.|++|.-..+..          ..+ ..+++|..  .|.++-|. |..+        |+++|++=
T Consensus       344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE--------yVvSGSDC  415 (559)
T KOG1334|consen  344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE--------YVVSGSDC  415 (559)
T ss_pred             ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc--------eEEecCcc
Confidence            4  566677777788899995532221          112 23678864  57788764 5666        99999999


Q ss_pred             CcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          424 KSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       424 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      |.|.||+-.++       ...+.+.+...-|++|.=||
T Consensus       416 GhIFiW~K~t~-------eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  416 GHIFIWDKKTG-------EIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             ceEEEEecchh-------HHHHHhhcccceEeccCCCC
Confidence            99999998887       34445555555677776555

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=2.9e-14  Score=122.67  Aligned_cols=229  Identities=12%  Similarity=0.107  Sum_probs=172.2

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      -..+|+|.+|+  ...++.+.....|.||.....+.-..                             ..++..|...|+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----------------------------~htls~Hd~~vt   59 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----------------------------AHTLSEHDKIVT   59 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----------------------------ceehhhhCccee
Confidence            45689999998  55899999999999999887763211                             134556999999


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcC-Cc--ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTS-DY--KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~-~~--~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      +++|+|..+.|++|+.|..-++|... .+  ++...+..+...++++.|+|.+ .+++|+.-..|.||-++....  -..
T Consensus        60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWV  137 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWV  137 (361)
T ss_pred             EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eeh
Confidence            99999999999999999999999883 33  4555667789999999999998 999999999999998874332  222


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec-----Cccc-------------cccee-eeecceeeEEEEec
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER-----ELNL-------------SHGGV-LRGHKLAILCLVTA  361 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~-----~~~~-------------~~~~~-~~~~~~~v~~~~~~  361 (474)
                      .......+.+.|+++.|+|++-+|++|+.|+..++|..     +...             ..... ..+.-..-..|+++
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence            33445567788999999999999999999999999863     1110             00001 11222334778888


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       362 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      |..|+-.+.|..+.+-|....... +.....-.-+..++.|..+..
T Consensus       218 G~~lawv~Hds~v~~~da~~p~~~-v~~~~~~~lP~ls~~~ise~~  262 (361)
T KOG1523|consen  218 GNRLAWVGHDSTVSFVDAAGPSER-VQSVATAQLPLLSVSWISENS  262 (361)
T ss_pred             CCEeeEecCCCceEEeecCCCchh-ccchhhccCCceeeEeecCCc
Confidence            999999999999999998766432 223333337788888877664

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=3.2e-15  Score=133.27  Aligned_cols=196  Identities=20%  Similarity=0.264  Sum_probs=148.3

Q ss_pred             EEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728          152 KAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS  229 (474)
Q Consensus       152 ~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  229 (474)
                      .+++|+  +..|++++.||++|||++........                                ...|..+|.++.|+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--------------------------------e~~~~~eV~DL~FS  195 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--------------------------------EIAHHAEVKDLDFS  195 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--------------------------------hHhhcCccccceeC
Confidence            556665  67999999999999999877654321                                23489999999999


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-----eEEEe-eCCCcEEEEEcccCCCceeeee
Q 047728          230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-----LVFTG-SADGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-----~l~~~-~~dg~i~iwd~~~~~~~~~~~~  301 (474)
                      ||++.|++.+.| ..+||+++++..+.....  .+.....+.|+.++     ++++. ..-+.|+.||+...... ....
T Consensus       196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~  273 (398)
T KOG0771|consen  196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR  273 (398)
T ss_pred             CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc
Confidence            999999999999 899999999977766542  22345556677665     34433 33456777776644332 1111


Q ss_pred             eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEEC
Q 047728          302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                      ..........|.+++++++|++++.|+.||.|.+++....+......+.|...|+  .|+|+.+++++-+.|.++.+..+
T Consensus       274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            2223334457999999999999999999999999999988888778888988775  56678999999999998888877


Q ss_pred             CC
Q 047728          380 KE  381 (474)
Q Consensus       380 ~~  381 (474)
                      .-
T Consensus       354 ~v  355 (398)
T KOG0771|consen  354 AV  355 (398)
T ss_pred             ee
Confidence            54

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=5e-13  Score=117.39  Aligned_cols=236  Identities=15%  Similarity=0.161  Sum_probs=170.5

Q ss_pred             cCcEEEEEEcCCEEEEeeCCCc--EEEEeCCccccccc-cCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728          110 EGHIYSLAAAGDLLYTGSDSKN--IRVWKNQREFSGFK-SNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV  186 (474)
Q Consensus       110 ~~~i~~~~~~~~~l~tgs~dg~--v~vwd~~~~~~~~~-~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  186 (474)
                      .-.|.-+-|+..++|..+.+..  +++.+..+...... .-...|.+|.++.++|+++-.+. |.|||+...+.+.....
T Consensus        46 ~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t  124 (391)
T KOG2110|consen   46 GVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIET  124 (391)
T ss_pred             CeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhc
Confidence            3457778899888887766444  78887654322211 24568999999999999988876 99999998776532221


Q ss_pred             cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeeeeecCcc
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESVIAHDDA  264 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~  264 (474)
                                                   +..+...+.++++++.+.+|+.-+  ..|.|.+||+.+.+.+..+..|+++
T Consensus       125 -----------------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~  175 (391)
T KOG2110|consen  125 -----------------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP  175 (391)
T ss_pred             -----------------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence                                         112555677777777777887533  4689999999999999999999999


Q ss_pred             eeEEEecCCC-eEEEeeCCCc-EEEEEcccCCCceeeeeeeeeec--ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728          265 VNSIVAGFDG-LVFTGSADGT-VKVWRRELQGKGTKHFFSQTLLK--QECAVTALAISPDAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       265 v~~v~~~~~~-~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      +.+++|+++| +|++++..|+ ||||.+..+++.      ..+..  ....|.+++|+|++++|++.+..++|++|.++.
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl------~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL------YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccEe------eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            9999999999 9999999998 689998765541      11111  145689999999999999999999999998654


Q ss_pred             ccccc---------------------------eeee------------ecceeeEEEEe--cCCEEEEEeCCCcEEEEEC
Q 047728          341 NLSHG---------------------------GVLR------------GHKLAILCLVT--AGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       341 ~~~~~---------------------------~~~~------------~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~  379 (474)
                      .....                           ..+.            .....+..+..  ...++..++.||.++.|.+
T Consensus       250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l  329 (391)
T KOG2110|consen  250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL  329 (391)
T ss_pred             cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence            31100                           0000            00112233442  4678999999999999988


Q ss_pred             CC
Q 047728          380 KE  381 (474)
Q Consensus       380 ~~  381 (474)
                      ..
T Consensus       330 ~~  331 (391)
T KOG2110|consen  330 PP  331 (391)
T ss_pred             CC
Confidence            54

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=6.3e-14  Score=122.54  Aligned_cols=299  Identities=16%  Similarity=0.217  Sum_probs=181.3

Q ss_pred             EEEEEEcCC--EEEEeeCCCcEEEEeCC-cccccccc-CccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCccee-e
Q 047728          113 IYSLAAAGD--LLYTGSDSKNIRVWKNQ-REFSGFKS-NSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIH-K  184 (474)
Q Consensus       113 i~~~~~~~~--~l~tgs~dg~v~vwd~~-~~~~~~~~-h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~-~  184 (474)
                      +.-++++..  -+|++..|-.|++|+.. +....++. ....|+|++|.   ...|+.|+..| |.+|..+....... .
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~  179 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI  179 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence            344566544  46778889999999844 33444443 34579999997   56788888887 99998875422111 0


Q ss_pred             eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCc
Q 047728          185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDD  263 (474)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~  263 (474)
                      ....  .            ..     ...-...+| .+|+++.|++||..+++++ .|..|.|||..++..+.......+
T Consensus       180 ~~~s--~------------~~-----~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  180 RMMS--T------------HH-----LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             cccc--c------------cc-----hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence            0000  0            00     000111235 6899999999999999988 567899999999888766645567


Q ss_pred             ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      .+.-+.|+||+ .|+++.-|+..++|+....-.      .....-..+.|...+|+|+|++|+.... |.-++|.+....
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt------~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~  312 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT------KERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDG  312 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccce------ecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecC
Confidence            78899999999 999999999999996543222      1122223448999999999998776554 334444433221


Q ss_pred             ccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728          343 SHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       343 ~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      +......                 .++......+-|+..-..  ..--.--.+++.+++|.|.|.        +||+.-.
T Consensus       313 ~~~~~~~-----------------~~~~k~~lliaDL~e~ti--~ag~~l~cgeaq~lawDpsGe--------yLav~fK  365 (445)
T KOG2139|consen  313 EDSVFLR-----------------PQSIKRVLLIADLQEVTI--CAGQRLCCGEAQCLAWDPSGE--------YLAVIFK  365 (445)
T ss_pred             CCccccC-----------------cccceeeeeeccchhhhh--hcCcccccCccceeeECCCCC--------EEEEEEc
Confidence            1111110                 122222233334421110  000011246789999999999        7777543


Q ss_pred             CC--------cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          423 DK--------SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       423 Dg--------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      .+        .|.+||.....+.  .......+.+  ....-++|+|.+ .+|++|.
T Consensus       366 g~~~v~~~k~~i~~fdtr~sp~v--els~cg~i~g--e~P~~IsF~pl~-n~g~lLs  417 (445)
T KOG2139|consen  366 GQSFVLLCKLHISRFDTRKSPPV--ELSYCGMIGG--EYPAYISFGPLK-NEGRLLS  417 (445)
T ss_pred             CCchhhhhhhhhhhhcccccCce--EEEecccccC--CCCceEEeeecc-cCCcEEE
Confidence            33        3667776554221  1111111222  126778888887 7777765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=3.8e-13  Score=123.49  Aligned_cols=194  Identities=17%  Similarity=0.240  Sum_probs=132.9

Q ss_pred             ccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          219 HFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       219 h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      ....|+|+.|-| +...++++-.+|.+.++|..-      ..+-..+  +-...+++ .+......+.       ...  
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p--~~~~~k~~~~f~i~t~ksk-------~~r--  280 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAP--SYQALKDGDQFAILTSKSK-------KTR--  280 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCC--cccccCCCCeeEEeeeecc-------ccC--
Confidence            347899999999 556777788999999998621      0011111  11112233 2222211110       000  


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc--eeeEEEEecCCEEEEEeCCCcE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGNLVFSGSADMSI  374 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~sgs~dg~i  374 (474)
                         .+..........|..++|+|||++||+.+.||.++|||..+.+.+ ...+..-  .-++|++|||+||++|++|.-|
T Consensus       281 ---NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV  356 (636)
T KOG2394|consen  281 ---NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV  356 (636)
T ss_pred             ---CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence               123333444558999999999999999999999999999877554 2333222  3457788899999999999999


Q ss_pred             EEEECCCCceEEEEeecCCccceEEEEEeeCCccc-----------------------------ccc-----------ce
Q 047728          375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL-----------------------------SRE-----------KR  414 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-----------------------------~~~-----------~~  414 (474)
                      .||.+...+  .+..-.+|.++|..|+|.|--...                             ...           -.
T Consensus       357 tVwSf~erR--VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~  434 (636)
T KOG2394|consen  357 TVWSFEERR--VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVT  434 (636)
T ss_pred             EEEEeccce--EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceE
Confidence            999998877  567888999999999998411000                             001           35


Q ss_pred             EEEEEecCCCcEEEEEccCCC
Q 047728          415 WILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       415 ~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      +.|.+.+.|-.+.+||+....
T Consensus       435 YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  435 YRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             EEeecccccceEEEEecchhh
Confidence            689999999999999998753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=4e-13  Score=130.13  Aligned_cols=215  Identities=12%  Similarity=0.025  Sum_probs=138.1

Q ss_pred             ccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCC--cEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADG--TVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg--~i~iwd~~  291 (474)
                      +...+...+|+|||+.|+..+.   +..|.+||+.+++... +....+.+..+.|+||| .|+ +.+.+|  .|.+||+.
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            5567899999999999886642   4579999998876432 22233445678999999 454 345555  48888886


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-Cc--EEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-GL--VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                      .+..       ..+..+...+....|+|+++.|+..+.+ +.  |.++|+.++....-...+......+++++|++|+..
T Consensus       276 tg~~-------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        276 SGQI-------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV  348 (429)
T ss_pred             CCCE-------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            5421       2223334567889999999988776654 44  444566554332111222233457789999998876


Q ss_pred             eCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc---EEEEEccCCCCCCCCCc
Q 047728          369 SAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS---VKMWRVSEQAPPLVSTT  442 (474)
Q Consensus       369 s~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~---i~vw~~~~~~~~~~~~~  442 (474)
                      +.+   ..|.+||+.+++...   +... .......|+||++        +|+.++.++.   +.++++...        
T Consensus       349 ~~~~g~~~I~~~dl~~g~~~~---Lt~~-~~~~~p~~SpDG~--------~i~~~s~~~~~~~l~~~~~~G~--------  408 (429)
T PRK03629        349 SSNGGQQHIAKQDLATGGVQV---LTDT-FLDETPSIAPNGT--------MVIYSSSQGMGSVLNLVSTDGR--------  408 (429)
T ss_pred             EccCCCceEEEEECCCCCeEE---eCCC-CCCCCceECCCCC--------EEEEEEcCCCceEEEEEECCCC--------
Confidence            543   358889998876432   2221 2234678999999        7777777764   566666432        


Q ss_pred             ccccccCCCCCCCccccCC
Q 047728          443 QQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       443 ~~~~~~~~~~~v~~l~~~p  461 (474)
                      ....+.+|.+.+...+|+|
T Consensus       409 ~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        409 FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CeEECccCCCCcCCcccCC
Confidence            3344566777777766655

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.1e-13  Score=126.12  Aligned_cols=283  Identities=16%  Similarity=0.172  Sum_probs=197.4

Q ss_pred             eecCcEEE--EEEcCCE-EEEeeCCCcEEEEeCCccccccccCcc--CEEEEEecCC--EEEEEeCCCeEEEEecCCCCc
Q 047728          108 REEGHIYS--LAAAGDL-LYTGSDSKNIRVWKNQREFSGFKSNSG--LVKAIVISNE--KIFSGHQDGKIRVWKVSSKDA  180 (474)
Q Consensus       108 ~h~~~i~~--~~~~~~~-l~tgs~dg~v~vwd~~~~~~~~~~h~~--~V~~i~~~~~--~l~s~~~dg~i~vwd~~~~~~  180 (474)
                      +|....+.  ++++|+| +|||...-.|++||+.+.-..|..|..  .|.-...+.+  .++.-..|.+|.+-.--..  
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~--  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR--  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence            34444444  5567885 678888999999998887777777743  3444444443  2444445555544221110  


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA  260 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  260 (474)
                        +...                               .-...-.+++++.-.--|+.++....|+-++++.|..+..+..
T Consensus       127 --hy~~-------------------------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~  173 (703)
T KOG2321|consen  127 --HYRT-------------------------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET  173 (703)
T ss_pred             --eeee-------------------------------ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence              0000                               0112234566665333355555567799999999999999988


Q ss_pred             cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc-----cEEEEEEcCCCCEEEEEcCCCcEE
Q 047728          261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC-----AVTALAISPDAAIVYCGSSDGLVN  334 (474)
Q Consensus       261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~~~dg~i~  334 (474)
                      ..+.++++..++.. +|++|+.+|.|..||.+................+.+     .|+++.|+.+|-.+++|+.+|.+.
T Consensus       174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~  253 (703)
T KOG2321|consen  174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL  253 (703)
T ss_pred             ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEE
Confidence            88999999999876 889999999999999987665444433333333333     499999999999999999999999


Q ss_pred             EeecCcccccceeeeecceeeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728          335 FWERELNLSHGGVLRGHKLAILCLVTA----GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       335 v~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  410 (474)
                      |||++....+...-.+...++..+.+.    ++.+++. ....++|||-.+++..  ..+. ....++.+|+.|+..   
T Consensus       254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~--asiE-pt~~lND~C~~p~sG---  326 (703)
T KOG2321|consen  254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPM--ASIE-PTSDLNDFCFVPGSG---  326 (703)
T ss_pred             EEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCce--eecc-ccCCcCceeeecCCc---
Confidence            999999887766556666777777762    3444444 4578999999998843  3333 445699999999998   


Q ss_pred             ccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                           +++++-.++.+..|=+....+.
T Consensus       327 -----m~f~Ane~~~m~~yyiP~LGPa  348 (703)
T KOG2321|consen  327 -----MFFTANESSKMHTYYIPSLGPA  348 (703)
T ss_pred             -----eEEEecCCCcceeEEccccCCC
Confidence                 8999999998888877765443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=5.5e-14  Score=124.14  Aligned_cols=261  Identities=13%  Similarity=0.130  Sum_probs=183.7

Q ss_pred             ecCcEEEEEEc----CCEEEEeeCCCcEEEEeCCcc--------ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecC
Q 047728          109 EEGHIYSLAAA----GDLLYTGSDSKNIRVWKNQRE--------FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       109 h~~~i~~~~~~----~~~l~tgs~dg~v~vwd~~~~--------~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~  176 (474)
                      ....|.+++|.    .+.|...+.+..+..+..+..        ........+.|..+...+..|++|-.+|.+.+|...
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence            34445555554    335555545656666553321        223345577888888889999999999999999998


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECC--CcEEEEEcCCcc
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWD--KTFKVWRTSDYK  253 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~d--g~i~iwd~~~~~  253 (474)
                      .+.......                             ........+..+.-++. ..++++|+..  ..+.|||++..+
T Consensus       134 ~~d~hss~l-----------------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~  184 (412)
T KOG3881|consen  134 SGDLHSSKL-----------------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK  184 (412)
T ss_pred             CCccccccc-----------------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence            665321100                             00112234555555663 4456668888  889999999886


Q ss_pred             eeeeeeec---------CcceeEEEecCC--C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC
Q 047728          254 CLESVIAH---------DDAVNSIVAGFD--G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA  321 (474)
Q Consensus       254 ~~~~~~~~---------~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  321 (474)
                      .+.+-+.-         .-.++++.|.+.  . .|++++.-+.|++||.+.+.+     +...+.-.+.+++++...|.+
T Consensus       185 qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-----PV~~fd~~E~~is~~~l~p~g  259 (412)
T KOG3881|consen  185 QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-----PVAQFDFLENPISSTGLTPSG  259 (412)
T ss_pred             eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-----ceeEeccccCcceeeeecCCC
Confidence            65544321         124567778777  4 899999999999999986655     455566668899999999999


Q ss_pred             CEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEE
Q 047728          322 AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKC  399 (474)
Q Consensus       322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~  399 (474)
                      +++++|..-+.+..||++.+......+.+..+.+..+..  ...++++++-|..|||+|+.+.+..  ... --...+++
T Consensus       260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll--~kv-YvKs~lt~  336 (412)
T KOG3881|consen  260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL--HKV-YVKSRLTF  336 (412)
T ss_pred             cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh--hhh-hhhccccE
Confidence            999999999999999999998887778888888877765  4569999999999999999986532  111 12244666


Q ss_pred             EEEeeCC
Q 047728          400 LAVEKDD  406 (474)
Q Consensus       400 l~~~~~~  406 (474)
                      +-+.++-
T Consensus       337 il~~~~~  343 (412)
T KOG3881|consen  337 ILLRDDV  343 (412)
T ss_pred             EEecCCc
Confidence            6665543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.60  E-value=1.9e-13  Score=118.75  Aligned_cols=275  Identities=14%  Similarity=0.153  Sum_probs=175.2

Q ss_pred             eeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-------cccccccCc------------cCEEEEEec----CCEE
Q 047728          107 VREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNS------------GLVKAIVIS----NEKI  161 (474)
Q Consensus       107 ~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~------------~~V~~i~~~----~~~l  161 (474)
                      .....-|.++.|+  |++||||..+|.|.++...+       ....++.|.            ..|..+.|.    ...+
T Consensus        22 vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             echhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            3445668888887  99999999999999996322       223344443            467788886    3467


Q ss_pred             EEEeCCCeEEEEecCCCCcceee----eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          162 FSGHQDGKIRVWKVSSKDASIHK----RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       162 ~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      +....|.+|++|.+.........    ..........+-.....+.........+...-..|+--|++|.++.|+..+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            88889999999998765433200    00000011111111111222222222222233568899999999999999888


Q ss_pred             EECCCcEEEEEcCCcceee---eeeec-----CcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeee-----
Q 047728          238 ASWDKTFKVWRTSDYKCLE---SVIAH-----DDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFS-----  302 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~~~~~---~~~~~-----~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----  302 (474)
                      + .|=.|.+|+++--..-.   .++.+     ..-|++..|+|..  .++..+..|+|++.|++...........     
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            7 47789999886432221   12222     3457888899986  8889999999999999843321111000     


Q ss_pred             -----eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-----------------eeeEEEEe
Q 047728          303 -----QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-----------------LAILCLVT  360 (474)
Q Consensus       303 -----~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----------------~~v~~~~~  360 (474)
                           ..+..--..|..+.|+++|+++++-.. -+|++||+...........-|.                 ..-.+++-
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                 011122356889999999999986543 5899999976655545544442                 11144555


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCc
Q 047728          361 AGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ++.++++|+..+.+++|+...+.
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             CcceEecccccceEEEecCCCCc
Confidence            66699999999999999976554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=5e-15  Score=133.27  Aligned_cols=251  Identities=17%  Similarity=0.191  Sum_probs=187.0

Q ss_pred             EEEEE--cCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728          114 YSLAA--AGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGT  188 (474)
Q Consensus       114 ~~~~~--~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  188 (474)
                      +.+.+  +|++|+.|+..|.|-.+|+..  ....+ .-...|..+.|- +..+++......+.|||-..-+.-..     
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHCl-----  206 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCL-----  206 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeeh-----
Confidence            44444  499999999999999998543  22222 234567778775 55666666777899999765443211     


Q ss_pred             cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEE
Q 047728          189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI  268 (474)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  268 (474)
                                                   .....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..+
T Consensus       207 -----------------------------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm  257 (545)
T KOG1272|consen  207 -----------------------------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM  257 (545)
T ss_pred             -----------------------------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh
Confidence                                         133568889999998899999999999999999999999998888999999


Q ss_pred             EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee
Q 047728          269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV  347 (474)
Q Consensus       269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  347 (474)
                      +-+|-+ .+-+|...|+|.+|......      +...+..|.++|.++++.++|+++++.+.|..++|||++....+...
T Consensus       258 ~qNP~NaVih~GhsnGtVSlWSP~ske------PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  258 KQNPYNAVIHLGHSNGTVSLWSPNSKE------PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             hcCCccceEEEcCCCceEEecCCCCcc------hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            999988 88899999999999877554      35677889999999999999999999999999999999988766666


Q ss_pred             eeecceeeEEEEecCCEEEEEeCCCcEEEEECC-CCceEEEEeecCC--ccceEEEEEeeCCc
Q 047728          348 LRGHKLAILCLVTAGNLVFSGSADMSICIWRRK-ENEHICLSMLTGH--SGPVKCLAVEKDDE  407 (474)
Q Consensus       348 ~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~~~h--~~~v~~l~~~~~~~  407 (474)
                      ...|...-++++.  +-+++.+....|.||.-. .+........-.|  .++|..+.|.|-..
T Consensus       332 ~tp~~a~~ls~Sq--kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  332 RTPHPASNLSLSQ--KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             ecCCCcccccccc--ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence            5556555555554  444555556679999532 2110011111122  35899999999765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=1.5e-13  Score=121.45  Aligned_cols=216  Identities=11%  Similarity=0.159  Sum_probs=162.0

Q ss_pred             eeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC------ccccccccCccCEEEEEec---CCEEEEEeCC--CeEEEE
Q 047728          105 SLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ------REFSGFKSNSGLVKAIVIS---NEKIFSGHQD--GKIRVW  173 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~------~~~~~~~~h~~~V~~i~~~---~~~l~s~~~d--g~i~vw  173 (474)
                      +....++.|..+......|++|-.+|.+.+|...      ..+..+..+ ..+..+.-.   +..+++|+..  ..+.+|
T Consensus       100 ~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence            3445677888888888899999999999999744      222333333 334444443   5577789999  889999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcCC
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~  251 (474)
                      |+++.+.+...  ...            +..++.+         .-.-.++++.|-+.  ...|++++.-+.|++||.+.
T Consensus       179 dle~~~qiw~a--KNv------------pnD~L~L---------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~  235 (412)
T KOG3881|consen  179 DLEQSKQIWSA--KNV------------PNDRLGL---------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH  235 (412)
T ss_pred             ecccceeeeec--cCC------------CCccccc---------eeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence            99987443221  111            1111111         12235678889886  88999999999999999986


Q ss_pred             c-ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC
Q 047728          252 Y-KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS  329 (474)
Q Consensus       252 ~-~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  329 (474)
                      + +++..+.....++.++...|++ .+++|...|.+..||++....     ....+.+..+.|+++..+|..+++++++-
T Consensus       236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~~~las~GL  310 (412)
T KOG3881|consen  236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTHPVLASCGL  310 (412)
T ss_pred             cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----eccccCCccCCcceEEEcCCCceEEeecc
Confidence            5 4677777778899999999999 999999999999999986543     34457788899999999999999999999


Q ss_pred             CCcEEEeecCcccccceeee
Q 047728          330 DGLVNFWERELNLSHGGVLR  349 (474)
Q Consensus       330 dg~i~v~d~~~~~~~~~~~~  349 (474)
                      |..|+|+|+++...+...+.
T Consensus       311 DRyvRIhD~ktrkll~kvYv  330 (412)
T KOG3881|consen  311 DRYVRIHDIKTRKLLHKVYV  330 (412)
T ss_pred             ceeEEEeecccchhhhhhhh
Confidence            99999999998655544443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.57  E-value=5.5e-13  Score=116.02  Aligned_cols=249  Identities=16%  Similarity=0.258  Sum_probs=176.7

Q ss_pred             ceeeeeeeeecCcEEEEE--EcCCEEEEeeCCCcEEEEe---CCcccc-ccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728          100 NVLIGSLVREEGHIYSLA--AAGDLLYTGSDSKNIRVWK---NQREFS-GFKSNSGLVKAIVIS--NEKIFSGHQDGKIR  171 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~--~~~~~l~tgs~dg~v~vwd---~~~~~~-~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~  171 (474)
                      ..++..+.||.+.|+...  +-.+-+++.+.|.++|||-   ..+.-. .......+++++.+.  -..|+.|-..|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            356677888988888744  4467899999999999995   222222 223346678888887  44788888889888


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      -+.+...-...                            .....+..|...|..+-|+.....+++.+.|..+.---.+.
T Consensus        94 efs~sedfnkm----------------------------~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   94 EFALSEDFNKM----------------------------TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             EEEhhhhhhhc----------------------------chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence            87664321110                            00123456999999999999889999999998776555555


Q ss_pred             cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG  331 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  331 (474)
                      +..+..+.. .....++.+.-. ..+.|...|.|.+-.+.....    .+...+.+|...+++++|.+....|++|..|.
T Consensus       146 ~~~lg~Y~~-~~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~  219 (404)
T KOG1409|consen  146 GNRLGGYNF-ETPASALQFDAL-YAFVGDHSGQITMLKLEQNGC----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDH  219 (404)
T ss_pred             CCcccceEe-eccCCCCceeeE-EEEecccccceEEEEEeecCC----ceEEEEcCcccceEEEEEcCCCcEEEeccccC
Confidence            555443322 111111211111 566777788877776654332    24677889999999999999999999999999


Q ss_pred             cEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q 047728          332 LVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       332 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      .+.+||+-...-....+.+|...+..++.  .-+.+++++.||.|.+|+.+..
T Consensus       220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999998776666677788777765554  5788999999999999998754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.2e-12  Score=125.18  Aligned_cols=219  Identities=16%  Similarity=0.124  Sum_probs=136.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCcEEEEEcccC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGTVKVWRRELQ  293 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~i~iwd~~~~  293 (474)
                      +...+.+.+|+||++.|+..+.+   ..|.+||+.+++... +....+.+....|+||+ .| ++.+.+|...||.++..
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            66778899999999999877643   359999999887543 33344556788999999 55 46778888888876543


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeec--CcccccceeeeecceeeEEEEecCCEEEEEeC
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWER--ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                      ...     ...+..+........|+|||+.|+..+. ++...+|.+  ..+........+.......++|+|++|+..+.
T Consensus       273 ~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        273 GSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             CCC-----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence            221     1223334445567889999998876554 456666654  33322111122222234678999999987775


Q ss_pred             CC---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCCCCCCCccccc
Q 047728          371 DM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAPPLVSTTQQHP  446 (474)
Q Consensus       371 dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~~~~~~~~~~~  446 (474)
                      ++   .|.+||+.+++..   .+... .......|+||++        .|+.++ ..|.-.++-+....      .....
T Consensus       348 ~~g~~~I~v~d~~~g~~~---~lt~~-~~~~~p~~spdg~--------~l~~~~~~~g~~~l~~~~~~g------~~~~~  409 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVT---ALTDT-TRDESPSFAPNGR--------YILYATQQGGRSVLAAVSSDG------RIKQR  409 (427)
T ss_pred             cCCcEEEEEEECCCCCeE---EccCC-CCccCceECCCCC--------EEEEEEecCCCEEEEEEECCC------CceEE
Confidence            54   6999999887643   22222 2346789999998        444444 44443344333211      12233


Q ss_pred             ccCCCCCCCccccCC
Q 047728          447 LEGHGVAPNSLPYAP  461 (474)
Q Consensus       447 ~~~~~~~v~~l~~~p  461 (474)
                      +..+.+.+...+|+|
T Consensus       410 l~~~~g~~~~p~wsp  424 (427)
T PRK02889        410 LSVQGGDVREPSWGP  424 (427)
T ss_pred             eecCCCCCCCCccCC
Confidence            444555566665554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=4.3e-12  Score=119.31  Aligned_cols=292  Identities=11%  Similarity=0.121  Sum_probs=173.8

Q ss_pred             CCEE-EEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728          120 GDLL-YTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       120 ~~~l-~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      ++++ ++-..+|.|.|.|..  +.+..+......-..+.++  ++++++++.||.|.++|+.+.+.......+       
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-------   77 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-------   77 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-------
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-------
Confidence            3454 456678999999954  4556665544433445565  678999999999999999999865544332       


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeec-------Cccee
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH-------DDAVN  266 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~  266 (474)
                                                ....++++++||++++++. .++.+.++|.++.+.+..+...       ...+.
T Consensus        78 --------------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~  131 (369)
T PF02239_consen   78 --------------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA  131 (369)
T ss_dssp             --------------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred             --------------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence                                      2456899999999998775 6899999999999999888653       23567


Q ss_pred             EEEecCCC-eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccc
Q 047728          267 SIVAGFDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLS  343 (474)
Q Consensus       267 ~v~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~  343 (474)
                      ++..++.. .++.. -..+.|.+.|......     +...............|+|++++++++ ..+..|.++|..+...
T Consensus       132 aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  132 AIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             EEEE-SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             eEEecCCCCEEEEEEccCCeEEEEEeccccc-----cceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence            77777777 44444 4457787778765432     222333445667889999999987664 5567899999887755


Q ss_pred             cceeee---ecceeeE-----------EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728          344 HGGVLR---GHKLAIL-----------CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       344 ~~~~~~---~~~~~v~-----------~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  409 (474)
                      ......   .|.....           ...-.+...++.-....+.+||....+  .+..+....++ .-+..+|+++  
T Consensus       207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk--vv~~I~~~G~g-lFi~thP~s~--  281 (369)
T PF02239_consen  207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK--VVKTIPTQGGG-LFIKTHPDSR--  281 (369)
T ss_dssp             EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS--EEEEEE-SSSS---EE--TT-S--
T ss_pred             EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe--EEEEEECCCCc-ceeecCCCCc--
Confidence            432221   2322222           222223333333333456678877776  45666665556 7788899998  


Q ss_pred             cccceEEEEEe----cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCcee
Q 047728          410 SREKRWILYSG----SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRIC  470 (474)
Q Consensus       410 ~~~~~~~l~s~----s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l  470 (474)
                            +|+..    ...++|.++|..+.+       ....+.....   .-..|+.|++||+.+
T Consensus       282 ------~vwvd~~~~~~~~~v~viD~~tl~-------~~~~i~~~~~---~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  282 ------YVWVDTFLNPDADTVQVIDKKTLK-------VVKTITPGPG---KRVVHMEFNPDGKEV  330 (369)
T ss_dssp             ------EEEEE-TT-SSHT-EEEEECCGTE-------EEE-HHHHHT-----EEEEEE-TTSSEE
T ss_pred             ------cEEeeccCCCCCceEEEEECcCcc-------eeEEEeccCC---CcEeccEECCCCCEE
Confidence                  67766    556899999998862       2222211110   004566889999865

...

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=3.1e-13  Score=124.03  Aligned_cols=188  Identities=18%  Similarity=0.216  Sum_probs=133.3

Q ss_pred             CCEEEEeeCCCcEEEEeCCc-ccccc-----ccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccC
Q 047728          120 GDLLYTGSDSKNIRVWKNQR-EFSGF-----KSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLP  190 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~-~~~~~-----~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  190 (474)
                      +--|+.|-..|.|.+.|... ++..+     .-....|+|+.|-   ...++.+-.+|.+.+||.+............++
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k  264 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK  264 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence            33566777778888887432 22111     1134689999996   557888899999999987432221111111111


Q ss_pred             cccee--eeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEE
Q 047728          191 TFKDF--IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI  268 (474)
Q Consensus       191 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  268 (474)
                      ....+  ..+..      ...+.+...|.--++.|+.++|+|||++||+.+.||.++|||..+.+++..++.--+...|+
T Consensus       265 ~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv  338 (636)
T KOG2394|consen  265 DGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV  338 (636)
T ss_pred             CCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEE
Confidence            11110  00000      00113334455566789999999999999999999999999999988888777777889999


Q ss_pred             EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728          269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      +|+||| +|++|++|..|.||.+....      .+..-.+|.+.|..++|+|
T Consensus       339 cWSPDGKyIvtGGEDDLVtVwSf~erR------VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  339 CWSPDGKYIVTGGEDDLVTVWSFEERR------VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEcCCccEEEecCCcceEEEEEeccce------EEEeccccccceeeEeecc
Confidence            999999 99999999999999987543      4677889999999999997

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=1.8e-14  Score=129.74  Aligned_cols=194  Identities=16%  Similarity=0.247  Sum_probs=161.6

Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      -..+.++.+|.+|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+++......+.|||-..    .    .
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G----t----E  202 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNG----T----E  202 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCC----c----E
Confidence            45688899999999999999999999999998888765 5678899998777777777889999998542    1    1


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      .........|..+.|-|..-+|++++..|.++.-|+..+..+..+..+ ....+++-.|-+..+-+|...|+|.+|....
T Consensus       203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            222333456899999999999999999999999999998776544332 3345677778888999999999999999988


Q ss_pred             CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      .+  ++..+..|.++|.+|++.++|.        |++|.|.|..++|||++.-.
T Consensus       283 ke--PLvKiLcH~g~V~siAv~~~G~--------YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  283 KE--PLVKILCHRGPVSSIAVDRGGR--------YMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             cc--hHHHHHhcCCCcceEEECCCCc--------EEeecccccceeEeeecccc
Confidence            77  4567788999999999999999        99999999999999998763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.54  E-value=1.6e-12  Score=112.54  Aligned_cols=291  Identities=14%  Similarity=0.157  Sum_probs=185.4

Q ss_pred             cCcEEEEEEcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceee
Q 047728          110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHK  184 (474)
Q Consensus       110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~  184 (474)
                      .+...+++++|+++|+++.- .+.|-|...  ..+.+. --+.|.-|.|.-   -.|.....|+.|.+|++...+.....
T Consensus        10 ~~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   10 LNPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             cCCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence            34567899999999999876 677777542  222222 245677777762   24666788999999999876543221


Q ss_pred             eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE-EEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728          185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL-LYSASWDKTFKVWRTSDYKCLESVIAHDD  263 (474)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  263 (474)
                                                      ......+.+++|+|||+. |.+...|-.|.+|.+.+.+....- -.+.
T Consensus        88 --------------------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~  134 (447)
T KOG4497|consen   88 --------------------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKT  134 (447)
T ss_pred             --------------------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-cccc
Confidence                                            125567899999999955 556667899999999887654432 2344


Q ss_pred             ceeEEEecCCCe-EEEeeC------------------------------------CCcEEEEEcccCCCceeeeeeeeee
Q 047728          264 AVNSIVAGFDGL-VFTGSA------------------------------------DGTVKVWRRELQGKGTKHFFSQTLL  306 (474)
Q Consensus       264 ~v~~v~~~~~~~-l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~  306 (474)
                      .+..++|++||. .+..+.                                    +..+.+||--..-       .....
T Consensus       135 ~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-------kv~aY  207 (447)
T KOG4497|consen  135 NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-------KVYAY  207 (447)
T ss_pred             CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh-------eeeee
Confidence            567888888883 333322                                    1224444422111       01122


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc---------------cc-----------------------------
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWEREL---------------NL-----------------------------  342 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~---------------~~-----------------------------  342 (474)
                      ...-.+..++|+|.+++|++|+.|+.+++.+--+               ..                             
T Consensus       208 e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~  287 (447)
T KOG4497|consen  208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH  287 (447)
T ss_pred             eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence            2345688999999999999999999998855100               00                             


Q ss_pred             ---------ccc------eeee--------ecceeeEEEEecCCEEEEEeCC--CcEEEEECCCCceEEEEeecCCccce
Q 047728          343 ---------SHG------GVLR--------GHKLAILCLVTAGNLVFSGSAD--MSICIWRRKENEHICLSMLTGHSGPV  397 (474)
Q Consensus       343 ---------~~~------~~~~--------~~~~~v~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~~~h~~~v  397 (474)
                               ...      ..++        ......+++++|..++++-.+.  +.+-+||++..+   +...-....+|
T Consensus       288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---l~avLiQk~pi  364 (447)
T KOG4497|consen  288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---LHAVLIQKHPI  364 (447)
T ss_pred             ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---hhhhhhhccce
Confidence                     000      0000        0112336778888888887654  689999998876   33333456789


Q ss_pred             EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      ....|+|...        .|+.+.....+++|.......        -..++....|..+.|+.
T Consensus       365 raf~WdP~~p--------rL~vctg~srLY~W~psg~~~--------V~vP~~GF~i~~l~W~~  412 (447)
T KOG4497|consen  365 RAFEWDPGRP--------RLVVCTGKSRLYFWAPSGPRV--------VGVPKKGFNIQKLQWLQ  412 (447)
T ss_pred             eEEEeCCCCc--------eEEEEcCCceEEEEcCCCceE--------EecCCCCceeeeEEecC
Confidence            9999999987        566665566799998765311        11223335677776654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=7.5e-11  Score=101.92  Aligned_cols=227  Identities=12%  Similarity=0.200  Sum_probs=153.0

Q ss_pred             EEEEEc--CCEEEEeeCCCcEEEEeCCcccc--c--cccCccCEEEEEecCCEEE-EEeCC------CeEEEEecCCCCc
Q 047728          114 YSLAAA--GDLLYTGSDSKNIRVWKNQREFS--G--FKSNSGLVKAIVISNEKIF-SGHQD------GKIRVWKVSSKDA  180 (474)
Q Consensus       114 ~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~--~--~~~h~~~V~~i~~~~~~l~-s~~~d------g~i~vwd~~~~~~  180 (474)
                      .+++++  ..-++.|.++| .+||+.+....  .  +....-.+..+-|-.++|+ .|+.+      ..|.|||=....+
T Consensus         9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~   87 (346)
T KOG2111|consen    9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC   87 (346)
T ss_pred             eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence            346666  55788888777 89998653211  1  1111223444445455544 44433      4699999433333


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceeeeee
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLESVI  259 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~  259 (474)
                      ....                                 .-..+|.++.+.++  .|++.- .+.|.||... +.+.+..+.
T Consensus        88 i~el---------------------------------~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~e  131 (346)
T KOG2111|consen   88 IIEL---------------------------------SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIE  131 (346)
T ss_pred             EEEE---------------------------------EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeee
Confidence            2221                                 15568999999765  566665 5779999987 556666654


Q ss_pred             ecC--cceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc-EE
Q 047728          260 AHD--DAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL-VN  334 (474)
Q Consensus       260 ~~~--~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~  334 (474)
                      .-.  ..+.+++-..+. .|+ -|-.-|.|+|-|+......    .......|...|.|++++.+|..+|+++..|+ |+
T Consensus       132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence            432  223333332222 333 3556799999998755432    34667889999999999999999999999997 88


Q ss_pred             EeecCcccccceeeeecc---eeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          335 FWERELNLSHGGVLRGHK---LAILCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       335 v~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      |||..++..+....++..   ...++|+++..+|++.++.|+++||.++.
T Consensus       208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999988877666543   33466778899999999999999998864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=4.1e-12  Score=123.63  Aligned_cols=195  Identities=14%  Similarity=0.053  Sum_probs=127.0

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCC--cEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADG--TVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg--~i~iwd~~  291 (474)
                      +...+.+.+|+||++.|+..+.+   ..|.+||+.+++... +....+...+..|+||| .+ ++.+.+|  .|.+||+.
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            66678999999999999987743   469999998876533 33344455678999999 44 4556666  48888886


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCc--EEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGL--VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                      .+..       ..+..+.......+|+|+++.|+..+. +|.  |+++|+.++........+......+++++|++|+..
T Consensus       281 ~g~~-------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        281 SRQL-------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             CCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            5431       222333444567899999998887653 444  666676655332212223333346889999998876


Q ss_pred             eCCC---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC-CC--cEEEEEccC
Q 047728          369 SADM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL-DK--SVKMWRVSE  433 (474)
Q Consensus       369 s~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~-Dg--~i~vw~~~~  433 (474)
                      +.++   .|.+||+.+++..   .+. +........|+||++        +|+..+. .+  .|.++++..
T Consensus       354 ~~~~~~~~I~v~d~~~g~~~---~Lt-~~~~~~~p~~spdG~--------~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        354 HGSGGQYRIAVMDLSTGSVR---TLT-PGSLDESPSFAPNGS--------MVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             ECCCCceeEEEEECCCCCeE---ECC-CCCCCCCceECCCCC--------EEEEEEecCCceEEEEEECCC
Confidence            5443   6999999887643   232 222445678999998        4544443 33  466666643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=6.4e-12  Score=121.76  Aligned_cols=232  Identities=13%  Similarity=0.013  Sum_probs=150.4

Q ss_pred             cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEe---CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728          131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGH---QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN  204 (474)
Q Consensus       131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (474)
                      .|.+||.. .....+..+...+....|+  ++.|+..+   .+..|.+|++.+++......                   
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-------------------  240 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-------------------  240 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence            58888854 3344555667789999998  56776543   24578999988765321110                   


Q ss_pred             eEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728          205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS  280 (474)
Q Consensus       205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~  280 (474)
                                    ....+...+|+|||+.|+.. +.++  .|++||+.+++... +..+...+....|+||+ .|+..+
T Consensus       241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s  305 (429)
T PRK03629        241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTS  305 (429)
T ss_pred             --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEe
Confidence                          12234468999999988765 4444  58999998876543 43445567889999999 555544


Q ss_pred             C-CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeecceeeE
Q 047728          281 A-DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGHKLAIL  356 (474)
Q Consensus       281 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~  356 (474)
                      . ++...||.+......     ...+...........|+|+|+.|+..+.+   ..|.+||+.++... .+.........
T Consensus       306 ~~~g~~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p  379 (429)
T PRK03629        306 DQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETP  379 (429)
T ss_pred             CCCCCceEEEEECCCCC-----eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCc
Confidence            4 456666654432221     11222233445678999999998876543   35888998776432 22222223346


Q ss_pred             EEEecCCEEEEEeCCCc---EEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          357 CLVTAGNLVFSGSADMS---ICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       357 ~~~~~~~~l~sgs~dg~---i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      .+++||++|+..+.++.   +.++++....   ...+.+|.+.+...+|+|-
T Consensus       380 ~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~---~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        380 SIAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             eECCCCCEEEEEEcCCCceEEEEEECCCCC---eEECccCCCCcCCcccCCC
Confidence            78899999999887764   6777776554   3456678888999999873

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.4e-12  Score=128.91  Aligned_cols=196  Identities=17%  Similarity=0.257  Sum_probs=156.9

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc----eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA----VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      .|....+..+...++.++.++.+.+||...+.....+......    ..-+.++++. ++++|+.-+.|.+|+...... 
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-  167 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-  167 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-
Confidence            3444555667788999999999999999887766655432221    1112344455 899999999999999873332 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                           ...+.+|++.|.++.++-+|.++++.++|.++++|++++.+.......+|.+.+.......+.+++++.|-+.++
T Consensus       168 -----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrv  242 (967)
T KOG0974|consen  168 -----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRV  242 (967)
T ss_pred             -----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEE
Confidence                 236889999999999999999999999999999999999988877778999999777776669999999999999


Q ss_pred             EECCCCceEEEEeecCCcc-ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          377 WRRKENEHICLSMLTGHSG-PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |+.+..+   +.++.+|.+ .|..++..++..        .++|++.|+.+++|++...
T Consensus       243 W~~~~~~---l~~y~~h~g~~iw~~~~~~~~~--------~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  243 WGVNGTQ---LEVYDEHSGKGIWKIAVPIGVI--------IKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             Eecccce---ehhhhhhhhcceeEEEEcCCce--------EEEeeccCcchhhhhhhcc
Confidence            9877665   347777764 688999988887        8999999999999998764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.5e-11  Score=119.96  Aligned_cols=196  Identities=12%  Similarity=0.058  Sum_probs=129.4

Q ss_pred             eccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCc--EEEEEc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGT--VKVWRR  290 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~--i~iwd~  290 (474)
                      .|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+....|+||| .| ++.+.++.  |.+||+
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            37778999999999999887763   468999999887653 445566677888999999 44 56666666  556676


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeee-ecceeeEEEEecCCEEE
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVF  366 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~  366 (474)
                      ..+.       ...+..+........|+||++.|+..+. +|  .|+++|+..+... .+.. ........++|+|++|+
T Consensus       278 ~~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        278 RSGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             CCCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEE
Confidence            5432       1233344455677899999998887664 33  5788887665332 2221 12223367889999998


Q ss_pred             EEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE-ecCCC-----cEEEEEccCC
Q 047728          367 SGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS-GSLDK-----SVKMWRVSEQ  434 (474)
Q Consensus       367 sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s-~s~Dg-----~i~vw~~~~~  434 (474)
                      ....+   ..|.+||+.++...   .+. ....+....|+||++        .|+. ....+     .|.++++..+
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~~~---~lt-~~~~~~~p~~spDG~--------~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSGER---ILT-SGFLVEGPTWAPNGR--------VIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EEEcCCCceEEEEEECCCCceE---ecc-CCCCCCCCeECCCCC--------EEEEEEccCCCCCcceEEEEECCCC
Confidence            76643   36888888665432   222 223467889999998        4444 33232     4666676544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=3.9e-11  Score=103.66  Aligned_cols=180  Identities=12%  Similarity=0.209  Sum_probs=128.0

Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA  321 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  321 (474)
                      ..|.|||=...+++.++. ...+|.++.+.++. +++. .++.|.||......+..   ...........+.+++-..+.
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l---~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLL---HVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhhe---eeeecccCCCceEeecCCCCc
Confidence            569999977777777775 47889999998875 3332 46789999876433211   111111222334333333344


Q ss_pred             CEEEE-EcCCCcEEEeecCcccc-cceeeeecceeeEEEEe--cCCEEEEEeCCCc-EEEEECCCCceEEEEeecCCccc
Q 047728          322 AIVYC-GSSDGLVNFWERELNLS-HGGVLRGHKLAILCLVT--AGNLVFSGSADMS-ICIWRRKENEHICLSMLTGHSGP  396 (474)
Q Consensus       322 ~~l~~-~~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~h~~~  396 (474)
                      .+|+. |..-|.|.|-|+..... ...++..|...+.|+.-  +|.++|+++..|+ |||||..+++.+....-......
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD  228 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence            45554 45568999999876654 34678899988877765  6999999999986 69999999985433333334567


Q ss_pred             eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      |.+++|+|+..        +|+.+|+.|+|.|+.+....
T Consensus       229 iy~iaFSp~~s--------~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  229 IYCIAFSPNSS--------WLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEEEeCCCcc--------EEEEEcCCCeEEEEEeecCC
Confidence            99999999999        99999999999999998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.5e-11  Score=119.65  Aligned_cols=230  Identities=13%  Similarity=0.072  Sum_probs=146.5

Q ss_pred             CcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728          130 KNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS  203 (474)
Q Consensus       130 g~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (474)
                      ..|.+||.. .....+..+...+....|+  ++.|+..+.+   ..|.+|++.+++.....                   
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-------------------  244 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-------------------  244 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------
Confidence            358888854 3445566677788888987  6678877643   46999999876532111                   


Q ss_pred             CeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEe
Q 047728          204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG  279 (474)
Q Consensus       204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~  279 (474)
                                    .......+.+|+|+++.|+ +.+.++  .|++||+.+++. ..+..+........|+||+ .++..
T Consensus       245 --------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~  309 (433)
T PRK04922        245 --------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFT  309 (433)
T ss_pred             --------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEE
Confidence                          1223345789999998775 445555  599999988764 3454555556678999999 55544


Q ss_pred             e-CCCcEEEE--EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCcccccceeeeecce
Q 047728          280 S-ADGTVKVW--RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNLSHGGVLRGHKL  353 (474)
Q Consensus       280 ~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~  353 (474)
                      + .+|...+|  |+..+..       ..+..........+|+|+|+.|+..+.++   .|.+||+.++... .+..+...
T Consensus       310 sd~~g~~~iy~~dl~~g~~-------~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~  381 (433)
T PRK04922        310 SDRGGRPQIYRVAASGGSA-------ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLD  381 (433)
T ss_pred             ECCCCCceEEEEECCCCCe-------EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCC
Confidence            4 45664454  5433221       11112223445689999999998765443   5899998766433 22222223


Q ss_pred             eeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          354 AILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       354 ~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      .-..++++|++++..+.+   +.|.++++....   ...+..+.+.+...+|+|
T Consensus       382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~---~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV---RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEECCCCc---eEEcccCCCCCCCCccCC
Confidence            345789999988776653   467788886554   334445556677777876

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=5e-11  Score=115.68  Aligned_cols=244  Identities=12%  Similarity=0.093  Sum_probs=149.6

Q ss_pred             cCCEEEEeeCC--CcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccC
Q 047728          119 AGDLLYTGSDS--KNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLP  190 (474)
Q Consensus       119 ~~~~l~tgs~d--g~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~  190 (474)
                      ++++.++....  ..|.++|.. .....+..+...+.+.+|+  ++.|+..+.+   ..|.+||+.+++.....      
T Consensus       163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------  236 (427)
T PRK02889        163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------  236 (427)
T ss_pred             ccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee------
Confidence            34544443333  346666643 3344555677888899998  5677766543   35999999877542111      


Q ss_pred             ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEE--cCCcceeeeeeecCcceeE
Q 047728          191 TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWR--TSDYKCLESVIAHDDAVNS  267 (474)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd--~~~~~~~~~~~~~~~~v~~  267 (474)
                                                 .....+.+.+|+||++.|+ +.+.++...||.  +.++. ...+..+......
T Consensus       237 ---------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~  288 (427)
T PRK02889        237 ---------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTE  288 (427)
T ss_pred             ---------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcC
Confidence                                       1223456789999998886 566777766665  44443 4455555555677


Q ss_pred             EEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCccc
Q 047728          268 IVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNL  342 (474)
Q Consensus       268 v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~  342 (474)
                      ..|+||| .++ +...+|...+|.+.......     .............+|+|+|++|+..+.++   .|.+||+.++.
T Consensus       289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-----QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             eEEcCCCCEEEEEecCCCCcEEEEEECCCCce-----EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            8899999 555 44445777888765332211     11111223344678999999998776554   59999988764


Q ss_pred             ccceeeeecceeeEEEEecCCEEEEEeCCC---cEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          343 SHGGVLRGHKLAILCLVTAGNLVFSGSADM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       343 ~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      .. .+..........++++++.|+..+.++   .+.+.+.....   ...+..+.+.+...+|+|-
T Consensus       364 ~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~---~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        364 VT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI---KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             eE-EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc---eEEeecCCCCCCCCccCCC
Confidence            32 222222334568899999888777543   35555554332   3344456667777788764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.43  E-value=7.1e-11  Score=100.95  Aligned_cols=267  Identities=13%  Similarity=0.148  Sum_probs=169.1

Q ss_pred             CCcEEEEeCCccc----ccc-ccCccCEEEEEec-----CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          129 SKNIRVWKNQREF----SGF-KSNSGLVKAIVIS-----NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       129 dg~v~vwd~~~~~----~~~-~~h~~~V~~i~~~-----~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      .|.+.+|+++...    ..+ ......+..+.|.     ++ .++-+..+|.|.++..+........+.-..        
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------  116 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------  116 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------
Confidence            4567777644211    111 1223445555554     34 567778888899988765443322110000        


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce--eeeeeecCcceeEEEecCCC-
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--LESVIAHDDAVNSIVAGFDG-  274 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~-  274 (474)
                                      ..  -......++.|++.+..++++-.+|.+.+-+......  ++.++.|+-..+...|+... 
T Consensus       117 ----------------~k--i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p  178 (339)
T KOG0280|consen  117 ----------------KK--ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP  178 (339)
T ss_pred             ----------------hh--hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence                            00  0111345788899899999999999999766555444  34788999999999888665 


Q ss_pred             -eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccccc-ceeeeec
Q 047728          275 -LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSH-GGVLRGH  351 (474)
Q Consensus       275 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~  351 (474)
                       .+++|+.|+.+..||+|..+.    +.-.....|...|.+|.-+| .+.+|++|+.|..|++||.++..++ .....+.
T Consensus       179 nlvytGgDD~~l~~~D~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G  254 (339)
T KOG0280|consen  179 NLVYTGGDDGSLSCWDIRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG  254 (339)
T ss_pred             ceEEecCCCceEEEEEecCCcc----eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc
Confidence             899999999999999994432    23344667888999999887 6789999999999999999855333 2222222


Q ss_pred             ceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceE---EEEeecCCccceEEEEEeeCCccccccceEEEEEec-CCCc
Q 047728          352 KLAILCLVTA--GNLVFSGSADMSICIWRRKENEHI---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKS  425 (474)
Q Consensus       352 ~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~  425 (474)
                      ...-++.+|.  +.+|+++ .-+-.+|-+...+...   .....+.|.+-+..-.|.....        +|+|++ .|..
T Consensus       255 GVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~--------~lATCsFYDk~  325 (339)
T KOG0280|consen  255 GVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS--------FLATCSFYDKK  325 (339)
T ss_pred             ceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccccccccc--------eeeeeeccccc
Confidence            2222333332  2333333 3334566666544322   3445667888888888855544        788875 6777


Q ss_pred             EE-EEEccCC
Q 047728          426 VK-MWRVSEQ  434 (474)
Q Consensus       426 i~-vw~~~~~  434 (474)
                      ++ +|-.-++
T Consensus       326 ~~~~Wl~~t~  335 (339)
T KOG0280|consen  326 IRQLWLHITG  335 (339)
T ss_pred             eeeeeeeccC
Confidence            55 7865554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1e-10  Score=114.03  Aligned_cols=228  Identities=9%  Similarity=-0.002  Sum_probs=146.2

Q ss_pred             cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeC---CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728          131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQ---DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN  204 (474)
Q Consensus       131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (474)
                      .|.+||.. .....+..|...+....|+  ++.|+..+.   +..|.+||+.+++...                      
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----------------------  240 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----------------------  240 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----------------------
Confidence            67778743 3445567788899999998  567776653   4689999998775421                      


Q ss_pred             eEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCc--EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728          205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKT--FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS  280 (474)
Q Consensus       205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~  280 (474)
                                 +..+...+...+|+|||+.|+ +.+.++.  |.+||+.+++. ..+..+........|+||+ .++..+
T Consensus       241 -----------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s  308 (435)
T PRK05137        241 -----------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES  308 (435)
T ss_pred             -----------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence                       111445667889999998775 5555555  77789887765 4455556667788999999 555544


Q ss_pred             -CCC--cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeeccee
Q 047728          281 -ADG--TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       281 -~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                       .+|  .|.++|+.....       ..+......+....|+|+++.|+....+   ..|.+||+..+... .+..+....
T Consensus       309 ~~~g~~~Iy~~d~~g~~~-------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~~~~~  380 (435)
T PRK05137        309 DRSGSPQLYVMNADGSNP-------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSGFLVE  380 (435)
T ss_pred             CCCCCCeEEEEECCCCCe-------EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCCCCCC
Confidence             444  466667653221       1222234456678899999999876543   35788887654321 222233344


Q ss_pred             eEEEEecCCEEEEEeCC------CcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          355 ILCLVTAGNLVFSGSAD------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      ...++++|+.|+..+.+      ..+.++|+..+...   .+. ..+.+...+|+|
T Consensus       381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~---~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER---EVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE---Ecc-CCCCccCcccCC
Confidence            56789999988765543      25778888766532   332 233456667765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=3.7e-11  Score=105.45  Aligned_cols=201  Identities=11%  Similarity=0.169  Sum_probs=139.8

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +..+..++|++.-..++++..|-.|++||-.. ++...++. ....|+|++|-|.+  .|++|+. +-|.+|........
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence            34577899999777889999999999999776 44444543 45689999999988  5666654 55889976533221


Q ss_pred             eee-------eeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeee-ecceeeEEEEecCCEEEE
Q 047728          297 TKH-------FFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVFS  367 (474)
Q Consensus       297 ~~~-------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s  367 (474)
                      ...       ...........+|+++.|.+||..+++++. |..|.|||.+++....-... ......+.++||+.+|++
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            110       011111122378999999999999998876 56799999998866543323 334457899999999999


Q ss_pred             EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       368 gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.-|+..++|.....-. +. ...--.+.|...+|+|+|+.       +|++++..  -++|.+.-
T Consensus       256 At~davfrlw~e~q~wt-~e-rw~lgsgrvqtacWspcGsf-------LLf~~sgs--p~lysl~f  310 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWT-KE-RWILGSGRVQTACWSPCGSF-------LLFACSGS--PRLYSLTF  310 (445)
T ss_pred             ecccceeeeehhcccce-ec-ceeccCCceeeeeecCCCCE-------EEEEEcCC--ceEEEEee
Confidence            99999999996543221 12 22233458999999999984       56666544  34555543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.39  E-value=3e-11  Score=103.20  Aligned_cols=148  Identities=13%  Similarity=0.188  Sum_probs=102.8

Q ss_pred             EEEecCCCCEEEEEEC----------CCcEEEEEcCC-cceeeeeee-cCcceeEEEecCCC-eE--EEeeCCCcEEEEE
Q 047728          225 SLSMSEDQNLLYSASW----------DKTFKVWRTSD-YKCLESVIA-HDDAVNSIVAGFDG-LV--FTGSADGTVKVWR  289 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~v~~~~~~-~l--~~~~~dg~i~iwd  289 (474)
                      .+.|+++|++|+.-..          -+...+|.++. ...+..+.. ..++|.+++|+|++ .+  +.|..+..|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            6788998887765433          13355555522 233444433 34579999999999 43  4455678999999


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCcccccceeeeecceeeEEEEecCCEEE
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVF  366 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  366 (474)
                      ++..       ....  -....+..+.|+|+|++|++++.   .|.|.+||.++...+.. ........++++|+|++|+
T Consensus        90 ~~~~-------~i~~--~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen   90 VKGK-------KIFS--FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLA  159 (194)
T ss_pred             Cccc-------EeEe--ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEE
Confidence            9611       1122  23457789999999999999864   46799999996655533 3333456688999999999


Q ss_pred             EEeC------CCcEEEEECCCC
Q 047728          367 SGSA------DMSICIWRRKEN  382 (474)
Q Consensus       367 sgs~------dg~i~iwd~~~~  382 (474)
                      ++..      |+.++||+....
T Consensus       160 ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEeccceeccccEEEEEecCe
Confidence            9874      788999998644

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=4.6e-10  Score=109.64  Aligned_cols=195  Identities=12%  Similarity=0.049  Sum_probs=122.7

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCC--cEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADG--TVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg--~i~iwd~~  291 (474)
                      +...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+||| .|+ +...+|  .|.+||+.
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            66678899999999999876644   369999998876533 33334455678999999 454 555555  47777876


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                      .+..       ..+..+........|+|+++.|+..+. ++  .|+++|+.++........+.......+++++++|+..
T Consensus       276 ~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        276 SRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             CCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence            4431       222233445567889999998776553 33  5777777665432222223333346788999998877


Q ss_pred             eCC-C--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc--EEEEEcc
Q 047728          369 SAD-M--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS--VKMWRVS  432 (474)
Q Consensus       369 s~d-g--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~--i~vw~~~  432 (474)
                      +.+ +  .|.+||+.+++...+..    ........|+|+++.       ++++...++.  |.++++.
T Consensus       349 ~~~~~~~~l~~~dl~tg~~~~lt~----~~~~~~p~~spdg~~-------i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSVRILTD----TSLDESPSVAPNGTM-------LIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             EccCCceEEEEEECCCCCEEEccC----CCCCCCceECCCCCE-------EEEEEecCCceEEEEEECC
Confidence            643 3  58889998876432221    112235689999983       4444444444  5555553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=1.1e-08  Score=96.45  Aligned_cols=272  Identities=15%  Similarity=0.233  Sum_probs=166.3

Q ss_pred             EEEeeCC----CcEEEEeCCc---ccccc--ccCccCEEEEEec--CCEEEEEeC----CCeEEEEecCCCC--cceeee
Q 047728          123 LYTGSDS----KNIRVWKNQR---EFSGF--KSNSGLVKAIVIS--NEKIFSGHQ----DGKIRVWKVSSKD--ASIHKR  185 (474)
Q Consensus       123 l~tgs~d----g~v~vwd~~~---~~~~~--~~h~~~V~~i~~~--~~~l~s~~~----dg~i~vwd~~~~~--~~~~~~  185 (474)
                      +++|+..    +.|.+|+...   .+...  .........++++  +++|++...    +|.|..|+++...  ......
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4555555    6788886421   11111  1123344556664  778888776    5789999988752  211111


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC-cceeeee--eec
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD-YKCLESV--IAH  261 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~--~~~  261 (474)
                      .                              .........++++|++++|+++. .+|.|.++++.. +......  ..|
T Consensus        82 ~------------------------------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~  131 (345)
T PF10282_consen   82 V------------------------------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH  131 (345)
T ss_dssp             E------------------------------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred             e------------------------------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence            1                              01233456789999999999887 589999999986 4333221  111


Q ss_pred             -----------CcceeEEEecCCC-eEEE-eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          262 -----------DDAVNSIVAGFDG-LVFT-GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       262 -----------~~~v~~v~~~~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                                 .....++.++|++ ++++ .-....|.+|++......... ............+.++|+|+++++++..
T Consensus       132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred             CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEec
Confidence                       2346789999998 4444 444567999998755422111 1222335567789999999999887665


Q ss_pred             -CCCcEEEeecC--cccc-cceeee-------ec-ceeeEEEEecCCEEEEEe-CCCcEEEEECC--CCceEEEEeecCC
Q 047728          329 -SDGLVNFWERE--LNLS-HGGVLR-------GH-KLAILCLVTAGNLVFSGS-ADMSICIWRRK--ENEHICLSMLTGH  393 (474)
Q Consensus       329 -~dg~i~v~d~~--~~~~-~~~~~~-------~~-~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~--~~~~~~~~~~~~h  393 (474)
                       .++.|.+|++.  .+.. ..+...       +. ...-+.++++|++|+++. .++.|.+|++.  ++....+..+...
T Consensus       211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~  290 (345)
T PF10282_consen  211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG  290 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred             CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence             46789999887  2211 111111       11 234578899999988876 56789999994  3454444454443


Q ss_pred             ccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccC
Q 047728          394 SGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSE  433 (474)
Q Consensus       394 ~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~  433 (474)
                      ....+.++++|+++        +|+ +...++.|.+|++..
T Consensus       291 G~~Pr~~~~s~~g~--------~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  291 GKFPRHFAFSPDGR--------YLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEET
T ss_pred             CCCccEEEEeCCCC--------EEEEEecCCCeEEEEEEeC
Confidence            44579999999998        555 445778999999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.36  E-value=9.3e-11  Score=100.22  Aligned_cols=150  Identities=13%  Similarity=0.180  Sum_probs=100.9

Q ss_pred             eEEEecCCC--eEEEee---------CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE--cCCCc
Q 047728          266 NSIVAGFDG--LVFTGS---------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG--SSDGL  332 (474)
Q Consensus       266 ~~v~~~~~~--~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~~dg~  332 (474)
                      ..+.|+++|  +++...         .-+...+|.++.....    .........++|.+++|+|+++.|++.  ..+..
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~----~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP----VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc----cceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            356788888  333332         1234666666433321    112222334569999999999987654  46779


Q ss_pred             EEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728          333 VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  409 (474)
                      |.+||++.. .+ ..+.......+.++|+|++|++++.+   |.|.+||+++.+.  +.... | ..++.++|+|+|+  
T Consensus        85 v~lyd~~~~-~i-~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~~-~-~~~t~~~WsPdGr--  156 (194)
T PF08662_consen   85 VTLYDVKGK-KI-FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTFE-H-SDATDVEWSPDGR--  156 (194)
T ss_pred             cEEEcCccc-Ee-EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eeccc-c-CcEEEEEEcCCCC--
Confidence            999999732 22 23334445568899999999998744   6799999997663  33333 3 3478999999999  


Q ss_pred             cccceEEEEEecC------CCcEEEEEccC
Q 047728          410 SREKRWILYSGSL------DKSVKMWRVSE  433 (474)
Q Consensus       410 ~~~~~~~l~s~s~------Dg~i~vw~~~~  433 (474)
                            +|+++..      |..++||++..
T Consensus       157 ------~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  157 ------YLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             ------EEEEEEeccceeccccEEEEEecC
Confidence                  7887764      78899999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=8.1e-10  Score=107.64  Aligned_cols=194  Identities=13%  Similarity=0.061  Sum_probs=118.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCc--EEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGT--VKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~--i~iwd~~  291 (474)
                      +...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +....+......|+||+ .| ++.+.+|.  |.++|+.
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            56678899999999998876543   258899998876432 22223344578999999 44 45666776  5666665


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                      .+.       ...+..+.......+|+|+++.|+..+. ++  .|.++|+.++....-...+......+++++|++|+..
T Consensus       295 tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        295 TKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence            332       1222333445677899999998876553 34  4666677655432212223333335789999988776


Q ss_pred             eC-CC--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc--EEEEEc
Q 047728          369 SA-DM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS--VKMWRV  431 (474)
Q Consensus       369 s~-dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~--i~vw~~  431 (474)
                      +. ++  .|.++|+.+++...   +... .......|+|+++.       ++++...++.  +.+++.
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~~---lt~~-~~d~~ps~spdG~~-------I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQV---LTST-RLDESPSVAPNGTM-------VIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             EecCCceEEEEEECCCCCeEE---ccCC-CCCCCceECCCCCE-------EEEEEecCCceEEEEEEC
Confidence            54 34  45567877776432   2221 11224579999983       4445555554  555565

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.36  E-value=5e-10  Score=109.17  Aligned_cols=186  Identities=16%  Similarity=0.099  Sum_probs=121.4

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCC--cEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADG--TVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg--~i~iwd~~  291 (474)
                      +...+...+|+|++++|+.+..+   ..|++||+.+++... +..+...+.++.|+|++ .| ++.+.++  .|.+||+.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            55568888999999999887654   479999998876533 33455667788999998 44 4455555  47777876


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                      ....       ..+..+........|+|+++.|+..+. ++  .|+++|+.++........+.......+++++++++.+
T Consensus       267 ~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       267 GKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             CCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence            4321       222233334456789999998876554 33  5777787765432111222333346788899999988


Q ss_pred             eCCC---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728          369 SADM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK  424 (474)
Q Consensus       369 s~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg  424 (474)
                      +.++   .|.+||+.++...   .+... .......|+|+++        .|+..+.++
T Consensus       340 ~~~~~~~~i~~~d~~~~~~~---~l~~~-~~~~~p~~spdg~--------~l~~~~~~~  386 (417)
T TIGR02800       340 HREGGGFNIAVMDLDGGGER---VLTDT-GLDESPSFAPNGR--------MILYATTRG  386 (417)
T ss_pred             EccCCceEEEEEeCCCCCeE---EccCC-CCCCCceECCCCC--------EEEEEEeCC
Confidence            8776   7899999876532   22222 2234568999998        555555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=2.8e-09  Score=100.47  Aligned_cols=239  Identities=16%  Similarity=0.206  Sum_probs=146.8

Q ss_pred             cCCeeEEEecCCCCEEEEEEC----CCcEEEEEcCCc--c--eeeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEE
Q 047728          220 FDAISSLSMSEDQNLLYSASW----DKTFKVWRTSDY--K--CLESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWR  289 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd  289 (474)
                      ......++++|++++|+++.+    ++.|..|++...  +  .+............+++++++ .|+++. .+|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345667889999999999987    468999988754  2  333344345566789999999 555554 589999999


Q ss_pred             cccCCCceeeeeeeee--------ecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccc-cc-----eeeeeccee
Q 047728          290 RELQGKGTKHFFSQTL--------LKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLS-HG-----GVLRGHKLA  354 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~-~~-----~~~~~~~~~  354 (474)
                      +...............        ........++.++|+++++++... ...|.+|+++.... +.     ....+....
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            9865332221111110        123456889999999998887643 45799999876541 11     112223344


Q ss_pred             eEEEEecCCEEEEEe-CCCcEEEEECC--CCceEEEEeecCC------ccceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728          355 ILCLVTAGNLVFSGS-ADMSICIWRRK--ENEHICLSMLTGH------SGPVKCLAVEKDDESLSREKRWILYSGSLDKS  425 (474)
Q Consensus       355 v~~~~~~~~~l~sgs-~dg~i~iwd~~--~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~  425 (474)
                      -+.|+++++++++.. .++.|.+|++.  .+....+......      ......|+++||++.       +.++.-.+.+
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-------lyvsnr~~~s  268 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF-------LYVSNRGSNS  268 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-------EEEEECTTTE
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE-------EEEEeccCCE
Confidence            588999999887665 57889999998  4443333333211      125788999999983       4445556788


Q ss_pred             EEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          426 VKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       426 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      |.+|++......+   .....+......+..+    +++|||++|..
T Consensus       269 I~vf~~d~~~g~l---~~~~~~~~~G~~Pr~~----~~s~~g~~l~V  308 (345)
T PF10282_consen  269 ISVFDLDPATGTL---TLVQTVPTGGKFPRHF----AFSPDGRYLYV  308 (345)
T ss_dssp             EEEEEECTTTTTE---EEEEEEEESSSSEEEE----EE-TTSSEEEE
T ss_pred             EEEEEEecCCCce---EEEEEEeCCCCCccEE----EEeCCCCEEEE
Confidence            9999995432111   1222222222234555    77999998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.35  E-value=2.5e-09  Score=102.60  Aligned_cols=268  Identities=13%  Similarity=0.097  Sum_probs=163.2

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      ....++.+++++.+|.|..+|.  ++.+-.+.............++.++.++.+|.+..+|.++++.........     
T Consensus        61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-----  135 (377)
T TIGR03300        61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-----  135 (377)
T ss_pred             eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-----
Confidence            3445888999999999999984  344333333322223445568899999999999999999887654332210     


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeE-EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce-----eE
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS-LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV-----NS  267 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~  267 (474)
                                                  .+.+ ..+  .+..++.++.++.|..||.++++.+..+.......     ..
T Consensus       136 ----------------------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s  185 (377)
T TIGR03300       136 ----------------------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSAS  185 (377)
T ss_pred             ----------------------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence                                        1111 111  24567778889999999999999877765432211     11


Q ss_pred             EEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc--ccEEEEEEcC--CCCEEEEEcCCCcEEEeecCcccc
Q 047728          268 IVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE--CAVTALAISP--DAAIVYCGSSDGLVNFWERELNLS  343 (474)
Q Consensus       268 v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~~  343 (474)
                      .... ++.++.+..+|.+..+|.+.+.......... .....  ..+..+.-+|  .+..+++++.+|.+..||.++++.
T Consensus       186 p~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       186 PVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             CEEE-CCEEEEECCCCEEEEEEccCCCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence            1122 3577888889999999987654321110000 00000  0000011111  356788888999999999988755


Q ss_pred             cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc-ceEEEEEeeCCccccccceEEEEEecC
Q 047728          344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG-PVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      ......   .........+..++.++.||.|..+|..+++..  ........ .......  .+.        .|++++.
T Consensus       264 ~W~~~~---~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~--W~~~~~~~~~~ssp~i--~g~--------~l~~~~~  328 (377)
T TIGR03300       264 LWKRDA---SSYQGPAVDDNRLYVTDADGVVVALDRRSGSEL--WKNDELKYRQLTAPAV--VGG--------YLVVGDF  328 (377)
T ss_pred             EEeecc---CCccCceEeCCEEEEECCCCeEEEEECCCCcEE--EccccccCCccccCEE--ECC--------EEEEEeC
Confidence            432221   112233346788899999999999999988732  22211111 1122222  233        6888999


Q ss_pred             CCcEEEEEccCCC
Q 047728          423 DKSVKMWRVSEQA  435 (474)
Q Consensus       423 Dg~i~vw~~~~~~  435 (474)
                      ||.|.++|..+++
T Consensus       329 ~G~l~~~d~~tG~  341 (377)
T TIGR03300       329 EGYLHWLSREDGS  341 (377)
T ss_pred             CCEEEEEECCCCC
Confidence            9999999998874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=2.7e-10  Score=113.05  Aligned_cols=184  Identities=18%  Similarity=0.196  Sum_probs=140.7

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeCCccccccc-cCccCEE--EEE---ec--CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKNQREFSGFK-SNSGLVK--AIV---IS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~-~h~~~V~--~i~---~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      +.+....++.++.+..+.+||........+ .+...+.  ++.   .+  .=++++|+.-+.|.+|+....+..      
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p------  168 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP------  168 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc------
Confidence            334467888888899999998553322221 2222211  111   11  338999999999999998732211      


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee-eeeecCccee
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE-SVIAHDDAVN  266 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~  266 (474)
                                                ..+.+|.+.|.++.++.||.+++++++|.++++|++.+.+... ..-+|...|+
T Consensus       169 --------------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw  222 (967)
T KOG0974|consen  169 --------------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW  222 (967)
T ss_pred             --------------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE
Confidence                                      1245699999999999999999999999999999999988776 6678999999


Q ss_pred             EEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          267 SIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       267 ~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      .+++.|. .+++++.|.+.++|+.+...       .....+| ...+..++..++...+++++.|+.+++||+.
T Consensus       223 ~~~~~~n-~i~t~gedctcrvW~~~~~~-------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  223 ACCFLPN-RIITVGEDCTCRVWGVNGTQ-------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EEEeccc-eeEEeccceEEEEEecccce-------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            9999988 99999999999999655221       1233444 4579999999999999999999999999964

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=8e-12  Score=129.56  Aligned_cols=192  Identities=19%  Similarity=0.262  Sum_probs=148.9

Q ss_pred             ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728          145 KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA  222 (474)
Q Consensus       145 ~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  222 (474)
                      +.+-..|.++.-+  ..+.+||+.||.|++|....++.+...+..                               -...
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s~ 2253 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNSR 2253 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccch
Confidence            3445556666555  458899999999999999888766544332                               2267


Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEe---eCCCcEEEEEcccCCCceee
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTG---SADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~  299 (474)
                      |+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....++.|-. ..++++   +.++.+.+||........  
T Consensus      2254 vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s-- 2329 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNS-- 2329 (2439)
T ss_pred             hhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccc--
Confidence            8999999999999999999999999986 567777788998888888876 344444   346889999976544321  


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                       +..  ..|.+.++++++-|..+.|++|+.+|.|++||++..+....+..        +. ...++++|+..|.|+||++
T Consensus      2330 -~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2330 -LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             -eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEc
Confidence             222  78999999999999999999999999999999987655432222        33 5679999999999999999


Q ss_pred             CCCc
Q 047728          380 KENE  383 (474)
Q Consensus       380 ~~~~  383 (474)
                      ....
T Consensus      2398 s~~~ 2401 (2439)
T KOG1064|consen 2398 SEFG 2401 (2439)
T ss_pred             cccc
Confidence            8664

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=2.7e-10  Score=105.86  Aligned_cols=242  Identities=16%  Similarity=0.214  Sum_probs=160.9

Q ss_pred             cCccCEEEEEec--CCE-EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728          146 SNSGLVKAIVIS--NEK-IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA  222 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  222 (474)
                      .+....+.|..+  |+| +++|..--.|++||+..-........                                ....
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--------------------------------Dae~   96 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--------------------------------DAEV   96 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--------------------------------cccc
Confidence            467777778777  555 66777888999999987544321110                                1223


Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeee
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  301 (474)
                      |.-.-++.|-..++--..|.+|-+.... |.. ..+.- ...-..++++.-. -|+.++....|+-++++.+.      +
T Consensus        97 V~feiLsDD~SK~v~L~~DR~IefHak~-G~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr------f  167 (703)
T KOG2321|consen   97 VDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR------F  167 (703)
T ss_pred             eeEEEeccchhhheEeecCceeeehhhc-Cee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEccccc------c
Confidence            4444455555555555667777665322 111 11111 1223455555444 56666777778888887654      4


Q ss_pred             eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----cc-----eeeEEEEe--cCCEEEEEe
Q 047728          302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-----HK-----LAILCLVT--AGNLVFSGS  369 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~-----~~v~~~~~--~~~~l~sgs  369 (474)
                      +..+......++++.+++...+|++|+.+|.|.+||.+.......+...     |.     ..+.++.+  +|-.+++|+
T Consensus       168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt  247 (703)
T KOG2321|consen  168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT  247 (703)
T ss_pred             ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence            5666677789999999999999999999999999999877554433222     22     23566665  578999999


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      .+|.|.|||++..++. +..-.+..-+|..+.|.+.+...      .|+|. +...++|||-.++++
T Consensus       248 s~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~~~~q~------~v~S~-Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  248 STGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQDTDQQN------KVVSM-DKRILKIWDECTGKP  306 (703)
T ss_pred             cCCcEEEEEcccCCce-eecccCCccceeeecccccCCCc------eEEec-chHHhhhcccccCCc
Confidence            9999999999998865 33334455689999998773311      46665 456899999988854

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=1.2e-10  Score=101.56  Aligned_cols=265  Identities=14%  Similarity=0.246  Sum_probs=165.4

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      ....-|.+|.|+  |++|+||..+|.|.++.-+..... ........+      ..-..-.|+        .-..-...|
T Consensus        23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fq------shepEFDYL--------kSleieEKi   87 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQ------SHEPEFDYL--------KSLEIEEKI   87 (433)
T ss_pred             chhcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeee------ccCcccchh--------hhhhhhhhh
Confidence            345678899997  999999999999999976554321 000000000      000000000        001234568


Q ss_pred             eEEEecCCC--CEEEEEECCCcEEEEEcCCcceee-----------------------------------ee-eecCcce
Q 047728          224 SSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKCLE-----------------------------------SV-IAHDDAV  265 (474)
Q Consensus       224 ~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~-----------------------------------~~-~~~~~~v  265 (474)
                      ..+.|.+++  ..++..+.|.+|++|.+.......                                   .+ .+|.--|
T Consensus        88 nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhi  167 (433)
T KOG1354|consen   88 NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHI  167 (433)
T ss_pred             hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEe
Confidence            889998854  567777899999999875321100                                   00 2477778


Q ss_pred             eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee--eeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccc
Q 047728          266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF--SQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       266 ~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      +++.++.|...+....|=.|.+|+++.....-...-  ......-...|++..|+| ..+.++-.++.|+|++.|++...
T Consensus       168 NSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a  247 (433)
T KOG1354|consen  168 NSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA  247 (433)
T ss_pred             eeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence            899999888666667788999999875443211111  111122345689999999 56778888999999999998542


Q ss_pred             ccce---eee----e--------cceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc-----------
Q 047728          343 SHGG---VLR----G--------HKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS-----------  394 (474)
Q Consensus       343 ~~~~---~~~----~--------~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~-----------  394 (474)
                      ....   ++.    +        --..|  +.|+.+|+|+++-+. -+|++||+..... ++.+..-|.           
T Consensus       248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~-pv~t~~vh~~lr~kLc~lYE  325 (433)
T KOG1354|consen  248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK-PVETYPVHEYLRSKLCSLYE  325 (433)
T ss_pred             hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC-cceEEeehHhHHHHHHHHhh
Confidence            1111   100    0        00112  556678999988753 5899999954322 234444443           


Q ss_pred             -cce---EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          395 -GPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       395 -~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                       ..|   ..++|+-++.        +++||+....++++++..+.
T Consensus       326 nD~IfdKFec~~sg~~~--------~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  326 NDAIFDKFECSWSGNDS--------YVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ccchhheeEEEEcCCcc--------eEecccccceEEEecCCCCc
Confidence             122   4578888888        89999999999999976553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.30  E-value=2.4e-09  Score=93.14  Aligned_cols=289  Identities=12%  Similarity=0.153  Sum_probs=175.5

Q ss_pred             cEEEEEEc--CC-EEEEeeCCCcEEEEeCCcc--ccccccCccCEEEEEec--C-CEEEEEeCCCeEEEEecCCCCccee
Q 047728          112 HIYSLAAA--GD-LLYTGSDSKNIRVWKNQRE--FSGFKSNSGLVKAIVIS--N-EKIFSGHQDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       112 ~i~~~~~~--~~-~l~tgs~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~  183 (474)
                      .|.-+.+.  .. .|.....|+.|.+|++.+.  ...+....+.+.++.|+  + ..|.+...|-.|.||.+.+......
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~  129 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL  129 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence            34445554  33 4556678999999996544  45566778889999998  4 3677888999999999998765432


Q ss_pred             eeecccCccceeeeeecC-CCCeEEEeeecc----------------ceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728          184 KRVGTLPTFKDFIKCSMK-PSNYIEVRRHRN----------------GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      .-.....     -...+. ...+..+..++.                +.+.-.+-..+.+.|+|||..|+         +
T Consensus       130 ~~pK~~~-----kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------V  195 (447)
T KOG4497|consen  130 PHPKTNV-----KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------V  195 (447)
T ss_pred             cccccCc-----eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------E
Confidence            2111100     000111 111111111111                01112233456677777766554         4


Q ss_pred             EEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc---------------CC----------------
Q 047728          247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL---------------QG----------------  294 (474)
Q Consensus       247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~---------------~~----------------  294 (474)
                      ||.--.-.+..+ .-.-.+..+.|+|.+ .+++|+.|+.+|+.+--+               ..                
T Consensus       196 wd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~  274 (447)
T KOG4497|consen  196 WDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH  274 (447)
T ss_pred             ecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence            442111111111 123467889999977 899999999998763110               00                


Q ss_pred             ----------------Cc-------------eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC--CcEEEeecCcccc
Q 047728          295 ----------------KG-------------TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD--GLVNFWERELNLS  343 (474)
Q Consensus       295 ----------------~~-------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~v~d~~~~~~  343 (474)
                                      ..             ....+..........+--++|++|..++++-...  +.+-+||++..+.
T Consensus       275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l  354 (447)
T KOG4497|consen  275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL  354 (447)
T ss_pred             cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence                            00             0000001111223457789999999999886543  5789999998776


Q ss_pred             cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728          344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD  423 (474)
Q Consensus       344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D  423 (474)
                      .......|......+.|....|+.+.....+++|......  ++. .....-.|..++|..++.        .++-.+.|
T Consensus       355 ~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~--~V~-vP~~GF~i~~l~W~~~g~--------~i~l~~kD  423 (447)
T KOG4497|consen  355 HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR--VVG-VPKKGFNIQKLQWLQPGE--------FIVLCGKD  423 (447)
T ss_pred             hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce--EEe-cCCCCceeeeEEecCCCc--------EEEEEcCC
Confidence            6556666666666677777788888878889999887644  232 233336799999999999        78888888


Q ss_pred             CcE
Q 047728          424 KSV  426 (474)
Q Consensus       424 g~i  426 (474)
                      ...
T Consensus       424 afc  426 (447)
T KOG4497|consen  424 AFC  426 (447)
T ss_pred             ceE
Confidence            643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=7.8e-10  Score=105.43  Aligned_cols=263  Identities=12%  Similarity=0.058  Sum_probs=176.9

Q ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-----------------cccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728          111 GHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-----------------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGK  169 (474)
Q Consensus       111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-----------------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~  169 (474)
                      ....|++++  ..++|.|+.||.++|.+++.                 .-+++.+|.+.|..+.|+  .+.|-|...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            456788888  67999999999999996431                 124578999999999998  568999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      |.||-+-.+......                              +-......|.+++|+.+|..++..-.||.|.+=.+
T Consensus        95 IiVWmlykgsW~EEM------------------------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEM------------------------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             EEEEeeecccHHHHH------------------------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            999998776532111                              00125567899999999999999999999988766


Q ss_pred             CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC--cee---eeeeeeeecccccEEEEEEc-----
Q 047728          250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK--GTK---HFFSQTLLKQECAVTALAIS-----  318 (474)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~---~~~~~~~~~~~~~v~~l~~~-----  318 (474)
                      ... .+..-.........+.|++|. .++.+-..|.++++|....-.  ...   ......+......|..+.|.     
T Consensus       145 dGN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  145 DGN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             ccc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            432 222111112234578899998 777788899999998652110  000   00111111122235555554     


Q ss_pred             ---CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---------CcEEEEECCCCceEE
Q 047728          319 ---PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---------MSICIWRRKENEHIC  386 (474)
Q Consensus       319 ---~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---------g~i~iwd~~~~~~~~  386 (474)
                         |+...|+++...|.+.+..-.+...+.-+-.+....-..++++|..|+.++.|         +.|++|..-..   .
T Consensus       224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~---i  300 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGH---I  300 (1189)
T ss_pred             cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchh---h
Confidence               47789999999999998766555444444444444445677789999988754         35666654432   2


Q ss_pred             EEeecCCccceEEEEEeeCCc
Q 047728          387 LSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      +.+++.....|++++|...+-
T Consensus       301 ~gtlkvpg~~It~lsWEg~gL  321 (1189)
T KOG2041|consen  301 VGTLKVPGSCITGLSWEGTGL  321 (1189)
T ss_pred             eEEEecCCceeeeeEEcCCce
Confidence            455666667788888876654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.30  E-value=3.7e-09  Score=97.23  Aligned_cols=300  Identities=12%  Similarity=0.088  Sum_probs=185.1

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCC---------------eEEEEecC
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDG---------------KIRVWKVS  176 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg---------------~i~vwd~~  176 (474)
                      .+++|.|.+|++....| |.+|.....-....--...|..+.|+  +.+|.+=+..+               .+.+||..
T Consensus        38 ~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~  116 (561)
T COG5354          38 VSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA  116 (561)
T ss_pred             eeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence            34566688988887765 88997432222222223457777777  56777755443               48999999


Q ss_pred             CCCcceeeeecccCccce-eeeeecCCCCeEEEeeeccceee------e------ccCCeeEEEecCCC--CEEEE----
Q 047728          177 SKDASIHKRVGTLPTFKD-FIKCSMKPSNYIEVRRHRNGLWI------K------HFDAISSLSMSEDQ--NLLYS----  237 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~------h~~~V~~l~~~~~~--~~l~s----  237 (474)
                      ++..+........+...- ++....+..-..++......+..      .      ....|....|+|.+  ..|+.    
T Consensus       117 sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE  196 (561)
T COG5354         117 SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPE  196 (561)
T ss_pred             CceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccc
Confidence            998876665554442222 22222221111111111111100      0      12457888899853  34443    


Q ss_pred             -EECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEe---e-------CCCcEEEEEcccCCCceeeeeeee
Q 047728          238 -ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTG---S-------ADGTVKVWRRELQGKGTKHFFSQT  304 (474)
Q Consensus       238 -~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~---~-------~dg~i~iwd~~~~~~~~~~~~~~~  304 (474)
                       .+.++.+++|.+..+..+.+-.-..-.=..+.|.+.|  +++-.   .       ....+.|++++...       ...
T Consensus       197 k~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-------i~V  269 (561)
T COG5354         197 KLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-------IPV  269 (561)
T ss_pred             cCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-------cce
Confidence             3567899999998776665544333334567788877  22211   1       12457788776322       122


Q ss_pred             eecccccEEEEEEcCCCCEEEEE--cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEEC
Q 047728          305 LLKQECAVTALAISPDAAIVYCG--SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRR  379 (474)
Q Consensus       305 ~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~  379 (474)
                      .....++|...+|.|.++.+++.  -.+..+.++|++.+  +..........-..|+|.+++++.++-|   |.|.+||.
T Consensus       270 ~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         270 EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             eccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence            22567899999999988776654  47888999999877  3344445556667789999999987755   78999998


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec------CCCcEEEEEccCC
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS------LDKSVKMWRVSEQ  434 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s------~Dg~i~vw~~~~~  434 (474)
                      .+.- .+...+.+-  ...-+.|+|+++        ++.+..      .|..|+||++...
T Consensus       348 ~~rf-~~~~~~~~~--n~s~~~wspd~q--------F~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         348 AGRF-KVAGAFNGL--NTSYCDWSPDGQ--------FYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             CCce-EEEEEeecC--CceEeeccCCce--------EEEecCCCcccccCcceEEEEecCc
Confidence            7654 234355443  345578999998        555543      4789999999764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.30  E-value=4.1e-09  Score=101.18  Aligned_cols=263  Identities=14%  Similarity=0.092  Sum_probs=156.8

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      ...+++.++.++.+|.|..+|..  +.+................++.++.+..+|.|..||..+++............  
T Consensus       101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~--  178 (377)
T TIGR03300       101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL--  178 (377)
T ss_pred             eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce--
Confidence            34457788889999999999853  33322222221112223347788888999999999999887655433211000  


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc----------
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD----------  263 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------  263 (474)
                                           .+....    +..+.  +..++.+..++.+..+|.++++.+........          
T Consensus       179 ---------------------~~~~~~----sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~  231 (377)
T TIGR03300       179 ---------------------TLRGSA----SPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV  231 (377)
T ss_pred             ---------------------eecCCC----CCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence                                 000000    11111  24677888889999999999987655431100          


Q ss_pred             ce-eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          264 AV-NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       264 ~v-~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      .+ ....+ .++.+++++.+|.+..||.+.++.....    .   . .......  ..+..+++++.+|.+..+|..++.
T Consensus       232 ~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~----~---~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       232 DVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKR----D---A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             ccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEee----c---c-CCccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence            01 11112 2457888889999999998765421111    0   1 1111111  246778888999999999998876


Q ss_pred             ccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728          343 SHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       343 ~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      .+.................+..|++++.+|.|+++|..+++.  +..+..+...+..--...++         .|+.++.
T Consensus       301 ~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~~~~---------~l~v~~~  369 (377)
T TIGR03300       301 ELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPPVVVGD---------GLLVQTR  369 (377)
T ss_pred             EEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCccccCCEEECC---------EEEEEeC
Confidence            543221111111122223578999999999999999998884  45555555444333333344         4778888


Q ss_pred             CCcEEEE
Q 047728          423 DKSVKMW  429 (474)
Q Consensus       423 Dg~i~vw  429 (474)
                      ||.|..|
T Consensus       370 dG~l~~~  376 (377)
T TIGR03300       370 DGDLYAF  376 (377)
T ss_pred             CceEEEe
Confidence            9998776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=2.8e-10  Score=98.04  Aligned_cols=269  Identities=17%  Similarity=0.244  Sum_probs=168.5

Q ss_pred             ecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-------ccccccccCc------------cCEEEEEec----CCEEEE
Q 047728          109 EEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-------REFSGFKSNS------------GLVKAIVIS----NEKIFS  163 (474)
Q Consensus       109 h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-------~~~~~~~~h~------------~~V~~i~~~----~~~l~s  163 (474)
                      ....|+++.|+  |.||+||...|.|.+|...       +-+..|++|.            ..|..|.|-    ...++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34568999998  8899999999999999633       2234466663            457777775    236777


Q ss_pred             EeCCCeEEEEecCCCCcceeeeec-----------ccCccceeeeeecCCCCeEEEeeecccee-eeccCCeeEEEecCC
Q 047728          164 GHQDGKIRVWKVSSKDASIHKRVG-----------TLPTFKDFIKCSMKPSNYIEVRRHRNGLW-IKHFDAISSLSMSED  231 (474)
Q Consensus       164 ~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~  231 (474)
                      .+.|.+|++|.+.........+-.           .+.....+...-.... ...+...+..++ ..|..-|.++.|+.|
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~h-d~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEH-DEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccccc-ceEEEeccceeccccceeEeeeeeecCc
Confidence            889999999998765432211100           0000000000000111 111112222233 568888999999999


Q ss_pred             CCEEEEEECCCcEEEEEcCCcce---eeeeeec-----CcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceee--
Q 047728          232 QNLLYSASWDKTFKVWRTSDYKC---LESVIAH-----DDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKH--  299 (474)
Q Consensus       232 ~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~--  299 (474)
                      ...++++ .|=.|.+|++.-...   +..++.|     ..-|++..|+|..  .+...+..|.|++-|+++.......  
T Consensus       184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            8888876 467899998864322   2222333     2457788899886  7778889999999999843221100  


Q ss_pred             ee--------eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc------------eee----
Q 047728          300 FF--------SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK------------LAI----  355 (474)
Q Consensus       300 ~~--------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------------~~v----  355 (474)
                      ..        ...+.+....|..+.|+++|+++++-+. -+|++||.+....+.....-|.            ..+    
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence            00        1111223456888999999999986544 5799999987766555543332            111    


Q ss_pred             -EEEEecCCEEEEEeCCCcEEEEECC
Q 047728          356 -LCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       356 -~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                       ..++-+...+++|+..+..-+|-..
T Consensus       342 eisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         342 EISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             EEEecCCcccccccccccceeeeccc
Confidence             3445567788899888887777643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.26  E-value=5e-10  Score=97.86  Aligned_cols=238  Identities=21%  Similarity=0.296  Sum_probs=176.9

Q ss_pred             eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceeeeee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcc
Q 047728          215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLESVI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~  291 (474)
                      .+.||.+.|++...-|-..-+++.+.|.+++||--+ .++.-..+. ....+++++.+.++. .|++|-..|++.-+.+.
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS   98 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence            456799999999888888889999999999999533 344333332 235678889988888 89999999999988764


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ..  -.+.........|...+..+-|+-....+++.+.|..+..--.+.+..+.........  .++..+-.+.+.|...
T Consensus        99 ed--fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--t~~~~d~~~~fvGd~~  174 (404)
T KOG1409|consen   99 ED--FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--SALQFDALYAFVGDHS  174 (404)
T ss_pred             hh--hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC--CCCceeeEEEEecccc
Confidence            32  1223345667788999999999999999999999988776555555444333222211  1222222277788888


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG  451 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  451 (474)
                      |.|.+-.+.......+..+.+|.+.+++++|.+...        +|++|..|..|.+||+.-..      .....+.+|.
T Consensus       175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--------~LfSg~~d~~vi~wdigg~~------g~~~el~gh~  240 (404)
T KOG1409|consen  175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR--------LLFSGASDHSVIMWDIGGRK------GTAYELQGHN  240 (404)
T ss_pred             cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc--------EEEeccccCceEEEeccCCc------ceeeeeccch
Confidence            888888776665556889999999999999999988        99999999999999997653      4556778899


Q ss_pred             CCCCccccCC------CCCcCCcee
Q 047728          452 VAPNSLPYAP------SFSSQGRIC  470 (474)
Q Consensus       452 ~~v~~l~~~p------~~s~Dg~~l  470 (474)
                      ..|..+.+.+      +...||.+.
T Consensus       241 ~kV~~l~~~~~t~~l~S~~edg~i~  265 (404)
T KOG1409|consen  241 DKVQALSYAQHTRQLISCGEDGGIV  265 (404)
T ss_pred             hhhhhhhhhhhheeeeeccCCCeEE
Confidence            8898887765      446666654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=1.3e-09  Score=93.31  Aligned_cols=210  Identities=14%  Similarity=0.203  Sum_probs=136.3

Q ss_pred             CCCcEEEEEcCCcceee--ee-eecCcceeEEEecC---CC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728          240 WDKTFKVWRTSDYKCLE--SV-IAHDDAVNSIVAGF---DG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA  311 (474)
Q Consensus       240 ~dg~i~iwd~~~~~~~~--~~-~~~~~~v~~v~~~~---~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (474)
                      ..|.+.+|++...+.+.  ++ ......+..+.|..   ++  .++-+..+|.|.++..................-....
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34678899887766544  11 12234455555543   22  5677788899999976533221111111111111123


Q ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeecC-cccccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728          312 VTALAISPDAAIVYCGSSDGLVNFWERE-LNLSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICL  387 (474)
Q Consensus       312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~  387 (474)
                      ..++.|++.+..++++..+|.+.+-+.. ......+..+.|...+....+   +.+++++|+.|+.+..||++.......
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            5678899999999999999999854433 333333567778766654444   468999999999999999994432223


Q ss_pred             EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCC
Q 047728          388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF  463 (474)
Q Consensus       388 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~  463 (474)
                      ...+-|...|.++.-+|....       +++||+.|-.|++||.+....+.....       ..+.|..+.++|.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~-------~I~TGsYDe~i~~~DtRnm~kPl~~~~-------v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPT-------YIATGSYDECIRVLDTRNMGKPLFKAK-------VGGGVWRIKHHPEI  265 (339)
T ss_pred             ecceeeecceEEEecCCCCCc-------eEEEeccccceeeeehhcccCccccCc-------cccceEEEEecchh
Confidence            336679999999988877554       899999999999999997654432211       22567777777753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1e-09  Score=102.71  Aligned_cols=194  Identities=15%  Similarity=0.276  Sum_probs=145.2

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCcceeeeeee---cCcceeEEEec--------------------CCC-eEEEeeCCCcE
Q 047728          230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIA---HDDAVNSIVAG--------------------FDG-LVFTGSADGTV  285 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~--------------------~~~-~l~~~~~dg~i  285 (474)
                      |...++|....||.+++||...++....+..   -.+...+..|.                    .+. .++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999998877665532   12233333332                    122 78889999999


Q ss_pred             EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc--eeeEEEEecCC
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGN  363 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~  363 (474)
                      .+|+...++.    ........|.+.|.++.++.+-..|++++.|+.+..|+....... .......  ....|+++|+.
T Consensus        83 ~~ys~~~g~i----t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   83 LLYSVAGGEI----TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-RIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEecCCeE----EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-eeeccCCCccceEEEcCCCC
Confidence            9999875442    122344578999999999999999999999999999998876544 3333333  33478888999


Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          364 LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       364 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .+++++  ++|++||+++++  .+..+.+|.++|.+++|-.+-.  ...+.++|.+...+..|.+|-+...
T Consensus       158 ~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~--g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLID--GIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             EEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEecc--ccccceeeeccccccceeEEEEEcc
Confidence            999887  679999999998  5789999999999999988711  0112237777778888999988763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.24  E-value=2.8e-08  Score=93.73  Aligned_cols=299  Identities=10%  Similarity=0.083  Sum_probs=165.9

Q ss_pred             CcceeeeeeeeecC-cE-EEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe-CCCeE
Q 047728           98 SPNVLIGSLVREEG-HI-YSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH-QDGKI  170 (474)
Q Consensus        98 ~~~~~~~~l~~h~~-~i-~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg~i  170 (474)
                      ...+.++.+..... ++ ..++++|+++++++.||.|.++|+.  +.+..++... ....++++  +++++++. .++.+
T Consensus        24 ~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v  102 (369)
T PF02239_consen   24 ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTV  102 (369)
T ss_dssp             TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEE
T ss_pred             CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCce
Confidence            33556666665433 22 3355679999999999999999955  4455555433 34567775  77777665 78999


Q ss_pred             EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEc
Q 047728          171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRT  249 (474)
Q Consensus       171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~  249 (474)
                      .++|.++.+..........+.                         ......+..|..++....++..-. .+.|.+.|.
T Consensus       103 ~v~D~~tle~v~~I~~~~~~~-------------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen  103 SVIDAETLEPVKTIPTGGMPV-------------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EEEETTT--EEEEEE--EE-T-------------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             eEeccccccceeecccccccc-------------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            999999887665443322110                         003346778888888776665554 488888898


Q ss_pred             CCcceee-eeeecCcceeEEEecCCC-e-EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC------
Q 047728          250 SDYKCLE-SVIAHDDAVNSIVAGFDG-L-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD------  320 (474)
Q Consensus       250 ~~~~~~~-~~~~~~~~v~~v~~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------  320 (474)
                      ...+.+. .............|.|++ + +++...+..|-++|.......  .........|..++..+ .+|.      
T Consensus       158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v--~~i~~g~~p~~~~~~~~-php~~g~vw~  234 (369)
T PF02239_consen  158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV--ALIDTGKKPHPGPGANF-PHPGFGPVWA  234 (369)
T ss_dssp             TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE-SSSBEETTEEEE-EETTTEEEEE
T ss_pred             ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE--EEeeccccccccccccc-cCCCcceEEe
Confidence            7765432 222345567788999998 4 455667788999997753221  11111112233333322 1221      


Q ss_pred             ----CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEE----eCCCcEEEEECCCCceEEEEeecC
Q 047728          321 ----AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG----SADMSICIWRRKENEHICLSMLTG  392 (474)
Q Consensus       321 ----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg----s~dg~i~iwd~~~~~~~~~~~~~~  392 (474)
                          +...++.-....+.+||....+....+......--+..+|+++++++.    ...++|.++|.++.+  .+..+..
T Consensus       235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~  312 (369)
T PF02239_consen  235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK--VVKTITP  312 (369)
T ss_dssp             EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHH
T ss_pred             eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc--eeEEEec
Confidence                222212222234556777776665544443333445678999999998    455899999999885  2344432


Q ss_pred             C-ccceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEccCC
Q 047728          393 H-SGPVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVSEQ  434 (474)
Q Consensus       393 h-~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~~~  434 (474)
                      . ...+..+.|+++|+.       +.+|. ..++.|.|||..+.
T Consensus       313 ~~~~~~~h~ef~~dG~~-------v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  313 GPGKRVVHMEFNPDGKE-------VWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             HHT--EEEEEE-TTSSE-------EEEEEE--TTEEEEEETTTT
T ss_pred             cCCCcEeccEECCCCCE-------EEEEEecCCCEEEEEECCCc
Confidence            2 235899999999984       33333 34448999999886

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.1e-09  Score=102.43  Aligned_cols=183  Identities=16%  Similarity=0.250  Sum_probs=143.1

Q ss_pred             CCEEEEeeCCCcEEEEeCC--cc---ccccccCccCEEEEEec----------------------CCEEEEEeCCCeEEE
Q 047728          120 GDLLYTGSDSKNIRVWKNQ--RE---FSGFKSNSGLVKAIVIS----------------------NEKIFSGHQDGKIRV  172 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~--~~---~~~~~~h~~~V~~i~~~----------------------~~~l~s~~~dg~i~v  172 (474)
                      ..++|....||.+|+|++.  +.   +.....-++..++..|.                      -..++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            6789999999999999843  22   22222334455555552                      125788889999999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      |++..++........                              .|.+.|.++.++.+-.+|++++.|+.+..|+...+
T Consensus        85 ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             EEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence            999888765443322                              39999999999999999999999999999999999


Q ss_pred             ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-----CCEEEE
Q 047728          253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-----AAIVYC  326 (474)
Q Consensus       253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~  326 (474)
                      +.+.........+..++++||+ .+++++  +.|++||++..+      ....+.+|.++|++++|-.+     |.++++
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce------EEEEecCCCcceEEEEEEEeccccccceeee
Confidence            9999999989999999999998 676664  789999998765      47889999999999999876     666665


Q ss_pred             E-cCCCcEEEeecCc
Q 047728          327 G-SSDGLVNFWEREL  340 (474)
Q Consensus       327 ~-~~dg~i~v~d~~~  340 (474)
                      + ..+..+.+|-++.
T Consensus       207 sa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  207 SAAAERGITVWVVEK  221 (541)
T ss_pred             ccccccceeEEEEEc
Confidence            4 3445577776554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.24  E-value=2.9e-09  Score=103.82  Aligned_cols=209  Identities=10%  Similarity=0.009  Sum_probs=131.5

Q ss_pred             cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728          131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN  204 (474)
Q Consensus       131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (474)
                      .|.++|.. .....+..+...+....|+  +++|+.+..+   ..|++|++.+++....                     
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---------------------  229 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---------------------  229 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---------------------
Confidence            47777753 3445555666678888887  6677766544   4799999987643211                     


Q ss_pred             eEEEeeeccceeeeccCCeeEEEecCCCCEEEE-EECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728          205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS-ASWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS  280 (474)
Q Consensus       205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~  280 (474)
                                  ..+...+.+++|+|+++.|+. .+.++  .|++||+.+++.. .+..+........|++++ .|+..+
T Consensus       230 ------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s  296 (417)
T TIGR02800       230 ------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS  296 (417)
T ss_pred             ------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE
Confidence                        113345667899999987764 44444  5889998876543 344444555677899998 555444


Q ss_pred             -CCC--cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCcccccceeeeeccee
Q 047728          281 -ADG--TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       281 -~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                       .++  .|.++|+....       ...+..+...+....|+|++++|+.++.++   .|.+||+.++... .+.......
T Consensus       297 ~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~  368 (417)
T TIGR02800       297 DRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDE  368 (417)
T ss_pred             CCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCC
Confidence             344  46666655322       122233445667889999999999888776   7888998765322 111111222


Q ss_pred             eEEEEecCCEEEEEeCCC---cEEEEECCC
Q 047728          355 ILCLVTAGNLVFSGSADM---SICIWRRKE  381 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~dg---~i~iwd~~~  381 (474)
                      ...+++++++|+..+.++   .+.+.+...
T Consensus       369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       369 SPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            347888999888777654   355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=7.5e-09  Score=101.16  Aligned_cols=229  Identities=11%  Similarity=-0.009  Sum_probs=138.1

Q ss_pred             EEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCe
Q 047728          132 IRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY  205 (474)
Q Consensus       132 v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (474)
                      |.++|.. .....+..+...+....|+  ++.|+..+.+   ..|.+|++.+++.....                     
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------------------  239 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------------------  239 (430)
T ss_pred             EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------------------
Confidence            6666743 3344555677788888887  6677665543   36888899876542111                     


Q ss_pred             EEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-Eee
Q 047728          206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGS  280 (474)
Q Consensus       206 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~  280 (474)
                                  .....+...+|+|+|+.|+ +...++  .|.+||+.+++.. .+..+........|+||+ .++ +..
T Consensus       240 ------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~  306 (430)
T PRK00178        240 ------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSD  306 (430)
T ss_pred             ------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEEC
Confidence                        0222344689999998887 444454  5888899887643 344455556678899998 444 444


Q ss_pred             CCCc--EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-C--cEEEeecCcccccceeeeecceee
Q 047728          281 ADGT--VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-G--LVNFWERELNLSHGGVLRGHKLAI  355 (474)
Q Consensus       281 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~v  355 (474)
                      .+|.  |.++|+..+..  .     .+...........|+|+++.|+....+ +  .|.+||+.++... .+.......-
T Consensus       307 ~~g~~~iy~~d~~~g~~--~-----~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~  378 (430)
T PRK00178        307 RGGKPQIYKVNVNGGRA--E-----RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDES  378 (430)
T ss_pred             CCCCceEEEEECCCCCE--E-----EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCC
Confidence            4454  55556543321  1     111112233457899999998877653 3  4788898776432 1212222223


Q ss_pred             EEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          356 LCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       356 ~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ..++++|+.++..+.+   ..|.++++.....   ..+..+.+.+...+|+|-
T Consensus       379 p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~---~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        379 PSVAPNGTMLIYATRQQGRGVLMLVSINGRVR---LPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ceECCCCCEEEEEEecCCceEEEEEECCCCce---EECcCCCCCcCCCccCCC
Confidence            5788999988776643   3466777765432   234445556677777763

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1.6e-10  Score=110.31  Aligned_cols=285  Identities=16%  Similarity=0.252  Sum_probs=186.4

Q ss_pred             EEEEEEcCCEEEEeeCCCcEEEEeCCccccc--cccCcc--CEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceee
Q 047728          113 IYSLAAAGDLLYTGSDSKNIRVWKNQREFSG--FKSNSG--LVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHK  184 (474)
Q Consensus       113 i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~--~~~h~~--~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~  184 (474)
                      ..++.+.|+-+|.++.-| +.+-|+......  +..|..  .|-.+.|+    .++-++......-.+|++........ 
T Consensus        29 a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI-  106 (1081)
T KOG0309|consen   29 AVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI-  106 (1081)
T ss_pred             ceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce-
Confidence            355677799999998877 455564433222  122322  35555565    23444444444567898875432111 


Q ss_pred             eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCcc-eeeeeeecC
Q 047728          185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYK-CLESVIAHD  262 (474)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~  262 (474)
                                            +      -.+-+|..+|+.+.|+|. ...+++++-|-.+..||+++.. .+.....-.
T Consensus       107 ----------------------e------f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~  158 (1081)
T KOG0309|consen  107 ----------------------E------FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR  158 (1081)
T ss_pred             ----------------------E------EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence                                  1      134569999999999994 4688999999999999998754 455555555


Q ss_pred             cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCc
Q 047728          263 DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       263 ~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      .....++|+-.. .+++.+....|++||++.+..     +...+++|...|..++|.. ....+.+.+.|++|+.||.+.
T Consensus       159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ccCceeeecccCcchhhhccCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            666788888766 677777888899999997765     5667777888899999887 456788899999999999765


Q ss_pred             ccccceeeeecceee-----------EEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          341 NLSHGGVLRGHKLAI-----------LCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       341 ~~~~~~~~~~~~~~v-----------~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      .............++           .++.|.  ++.+..---+.....|+..++.. .+..+.||...|....|-..+.
T Consensus       234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~-pVh~F~GH~D~V~eFlWR~r~e  312 (1081)
T KOG0309|consen  234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNT-PVHTFVGHDDVVLEFLWRKRKE  312 (1081)
T ss_pred             cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCc-ceeeecCcchHHHHHhhhhccc
Confidence            433222211111111           222221  22222222233444555544433 4789999999998888876554


Q ss_pred             ccc--ccceEEEEEecCCCcEEEEEccC
Q 047728          408 SLS--REKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       408 ~~~--~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ...  +...+.|+|=+.|..+++|.+..
T Consensus       313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCCCccceeEEEeecCCceEeeeccH
Confidence            221  33456899999999999998865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.19  E-value=1.9e-07  Score=86.17  Aligned_cols=268  Identities=10%  Similarity=0.042  Sum_probs=157.4

Q ss_pred             CcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeC----------CCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          130 KNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQ----------DGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       130 g~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      ++|.+.|..  +.+..+.....+-..+.-+++.|+++..          +..|.+||..+.+......+...|...    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~----  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL----  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh----
Confidence            778888844  3333333222222224445666665554          789999999998876555443221100    


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-C-CCcEEEEEcCCcceeeeeeecCcceeEEEecCCCe
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-W-DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL  275 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  275 (474)
                                           ....-..++++|||++|+... . +..|.+.|+.+++.+..+.... ...-...+++ .
T Consensus       103 ---------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~  159 (352)
T TIGR02658       103 ---------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND-T  159 (352)
T ss_pred             ---------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC-c
Confidence                                 112234678899999999876 3 6899999999999998886522 2222222222 2


Q ss_pred             EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE-EEEEcC-CCCEEEEEcCCCcEEEeecCccccc----ceee-
Q 047728          276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAISP-DAAIVYCGSSDGLVNFWERELNLSH----GGVL-  348 (474)
Q Consensus       276 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~-  348 (474)
                      ..+-+.||......+...++..... ...+.....++. .-.|.+ +++++++..+ |.|.+.|+......    ...+ 
T Consensus       160 ~~~~~~Dg~~~~v~~d~~g~~~~~~-~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~  237 (352)
T TIGR02658       160 FFMHCRDGSLAKVGYGTKGNPKIKP-TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT  237 (352)
T ss_pred             cEEEeecCceEEEEecCCCceEEee-eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc
Confidence            2234456666655544333311100 011111000000 004455 8888887777 99999996433111    1111 


Q ss_pred             --------eecceeeEEEEecCCEEEEEe----------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728          349 --------RGHKLAILCLVTAGNLVFSGS----------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       349 --------~~~~~~v~~~~~~~~~l~sgs----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  410 (474)
                              +......++++++++.+++..          ..+.|.++|..+.+.  +..+.. ...+..++++||++.. 
T Consensus       238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~-  313 (352)
T TIGR02658       238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPL-  313 (352)
T ss_pred             ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeE-
Confidence                    111122488888998888753          225799999988874  344432 3478999999998831 


Q ss_pred             ccceEEEEEecCCCcEEEEEccCCC
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                           ++++...++.|.+.|+.+++
T Consensus       314 -----lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       314 -----LYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             -----EEEeCCCCCcEEEEECcCCe
Confidence                 45555578999999998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1e-08  Score=99.93  Aligned_cols=229  Identities=13%  Similarity=0.019  Sum_probs=133.5

Q ss_pred             cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeC-CC--eEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728          131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQ-DG--KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN  204 (474)
Q Consensus       131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (474)
                      .|.++|.. .....+..+...+....|+  ++.|+..+. ++  .|.+||+.+++.....   .                
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt---~----------------  259 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT---S----------------  259 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec---C----------------
Confidence            45566643 2334455567778888887  566765543 33  5888888776532110   0                


Q ss_pred             eEEEeeeccceeeeccCCeeEEEecCCCCEEEE-EECCCc--EEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEe
Q 047728          205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS-ASWDKT--FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTG  279 (474)
Q Consensus       205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~  279 (474)
                                    ........+|+||++.|+. .+.++.  |.++|+.+++. ..+..+........|+||+ .+ ++.
T Consensus       260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s  324 (448)
T PRK04792        260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTS  324 (448)
T ss_pred             --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE
Confidence                          1112346789999998765 455665  77888887664 3444455566778999999 44 444


Q ss_pred             eCCCcEEEE--EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-C--cEEEeecCcccccceeeeeccee
Q 047728          280 SADGTVKVW--RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-G--LVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       280 ~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                      ..++...+|  |+..+..       ..+..........+|+|++++|+..+.+ +  .|.++|+.++... .+.......
T Consensus       325 ~~~g~~~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~  396 (448)
T PRK04792        325 ERGGKPQIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDE  396 (448)
T ss_pred             CCCCCceEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCC
Confidence            445555555  5443221       1111122223456899999988876553 4  3555777665432 111111122


Q ss_pred             eEEEEecCCEEEEEeC-CC--cEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          355 ILCLVTAGNLVFSGSA-DM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      ...++++|+.|+..+. ++  .+.+++.....   ...+..+.+.+...+|+|
T Consensus       397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~---~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF---KARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCCc---eEECcCCCCCcCCCccCC
Confidence            3478899988776554 33  36677775443   334555556677778876

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.7e-08  Score=97.67  Aligned_cols=201  Identities=12%  Similarity=0.035  Sum_probs=116.4

Q ss_pred             cCCeeEEEecCCCCE--E-EEEECC--CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee-CCC----cEEEE
Q 047728          220 FDAISSLSMSEDQNL--L-YSASWD--KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS-ADG----TVKVW  288 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~--l-~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg----~i~iw  288 (474)
                      ...+..-+|+|||+.  + ++...+  ..|.+.++.+++... +....+......|+||| .|+..+ .+|    .+.+|
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            334566799999875  2 244333  357888888776433 33344455678999999 555433 333    34446


Q ss_pred             EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEe--ecCcccccceeeeec--ceeeEEEEecCC
Q 047728          289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFW--ERELNLSHGGVLRGH--KLAILCLVTAGN  363 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~--d~~~~~~~~~~~~~~--~~~v~~~~~~~~  363 (474)
                      ++.......   ...............+|+|||+.|+..+ .+|...+|  ++.........+..+  ......++|+|+
T Consensus       263 ~~~~g~~g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        263 SLETGAIGK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             ecccCCCCc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence            665321111   1111112223346789999999877655 46655555  443211111222222  223467899999


Q ss_pred             EEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC--CCcEEEEEccCC
Q 047728          364 LVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL--DKSVKMWRVSEQ  434 (474)
Q Consensus       364 ~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~--Dg~i~vw~~~~~  434 (474)
                      .|+..+.+   ..|.+||+.+++..   .+......+....|+||++.       +++++..  ...|.+|++..+
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~---~Lt~~~~~~~~p~wSpDG~~-------L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDY---QLTTSPENKESPSWAIDSLH-------LVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeE---EccCCCCCccceEECCCCCE-------EEEEECCCCCceEEEEECCCC
Confidence            88876543   46999999888743   33333345678999999983       3334443  346778888765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=7.4e-08  Score=89.94  Aligned_cols=299  Identities=12%  Similarity=0.143  Sum_probs=172.1

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEE-----EeCC-----CeEEEEecCCCC
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFS-----GHQD-----GKIRVWKVSSKD  179 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s-----~~~d-----g~i~vwd~~~~~  179 (474)
                      .+.+.+.+|+++|.+. +..|+|++.......+......+.++.|+  +.+|.|     ...+     -.+.+|+++++.
T Consensus        38 ~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~  116 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV  116 (566)
T ss_pred             eeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence            3555666688877765 55799998554323333333377888887  556554     1122     347799999843


Q ss_pred             cceeeeeccc----Cccce--eeeeecCCCCeEEEee---eccceeeeccCCeeEEEecCCC--CEEEE-----EECCCc
Q 047728          180 ASIHKRVGTL----PTFKD--FIKCSMKPSNYIEVRR---HRNGLWIKHFDAISSLSMSEDQ--NLLYS-----ASWDKT  243 (474)
Q Consensus       180 ~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~~~~~--~~l~s-----~s~dg~  243 (474)
                      .....+....    +.+..  .+.+- ...+.+.+..   ...-.-.-|...|+.+.++|.+  ..+++     .+.-..
T Consensus       117 ~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~  195 (566)
T KOG2315|consen  117 QRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS  195 (566)
T ss_pred             ehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence            3322211110    00000  00000 0000111111   0111112267789999999863  33443     245567


Q ss_pred             EEEEEcCCcceeeeee---ecCcceeEEEecCCC--eEEEeeC--C---------CcEEEEEcccCCCceeeeeeeeeec
Q 047728          244 FKVWRTSDYKCLESVI---AHDDAVNSIVAGFDG--LVFTGSA--D---------GTVKVWRRELQGKGTKHFFSQTLLK  307 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~--~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~~  307 (474)
                      |+||.......-..+.   -....-..+.|++.+  +|+.++.  |         .++++.++.  +.     .......
T Consensus       196 vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~-----s~~V~L~  268 (566)
T KOG2315|consen  196 VRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GE-----SVSVPLL  268 (566)
T ss_pred             EEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--Cc-----eEEEecC
Confidence            9999876222111110   011222356777766  4433332  3         357777665  11     1233344


Q ss_pred             ccccEEEEEEcCCCCEEEE--EcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEECCCC
Q 047728          308 QECAVTALAISPDAAIVYC--GSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRRKEN  382 (474)
Q Consensus       308 ~~~~v~~l~~~~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~  382 (474)
                      ..++|.++.|+|+++.+++  |..-..+.|||++....  ..+.......+-++|.|++++.++-+   |.|-|||+.+.
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            5789999999999987665  55677899999885522  23333444557788899999887754   89999999986


Q ss_pred             ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC------CCcEEEEEccC
Q 047728          383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL------DKSVKMWRVSE  433 (474)
Q Consensus       383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------Dg~i~vw~~~~  433 (474)
                      +  ++..+..  ..-+-+.|+|||+        +|+|+..      |+.++||++..
T Consensus       347 K--~i~~~~a--~~tt~~eW~PdGe--------~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  347 K--LIAKFKA--ANTTVFEWSPDGE--------YFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             h--hcccccc--CCceEEEEcCCCc--------EEEEEeccccEEecCCeEEEEecC
Confidence            5  4555554  3356789999999        7777763      78899999864

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=1.8e-10  Score=106.66  Aligned_cols=252  Identities=14%  Similarity=0.180  Sum_probs=161.2

Q ss_pred             ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ++.+.+|...|.+++--  .+.+++++.|.+|++|.+...........                         ..-++..
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-------------------------CQfTY~a  782 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-------------------------CQFTYQA  782 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-------------------------eeeEhhh
Confidence            56788999999988654  67899999999999999876432111000                         0124567


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCC--C-e-EEEeeCCCcEEEEEccc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFD--G-L-VFTGSADGTVKVWRREL  292 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~--~-~-l~~~~~dg~i~iwd~~~  292 (474)
                      |..+|.++.|-.+.++++++  |+-|++||.--++.+..+..  ..+.+.-+...++  . . ++-++...+|+++|.+.
T Consensus       783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS  860 (1034)
T ss_pred             ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence            99999999999988887765  88999999877776654321  1233333333333  2 3 44448899999999886


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee---------------------eec
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL---------------------RGH  351 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---------------------~~~  351 (474)
                      .+-.... ......+...-++++++.+.|+.++++-..|+|.+.|.+++..+....                     ..|
T Consensus       861 ce~~~E~-kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldH  939 (1034)
T KOG4190|consen  861 CEWTCEL-KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDH  939 (1034)
T ss_pred             ccceeeE-EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccc
Confidence            5432111 112223445678999999999999999999999999999886543111                     122


Q ss_pred             ceeeEE--------EE------------ecCCEEEEEeCCCcEEEEECCCCceE--EE--EeecCCccceEEEEEeeCCc
Q 047728          352 KLAILC--------LV------------TAGNLVFSGSADMSICIWRRKENEHI--CL--SMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       352 ~~~v~~--------~~------------~~~~~l~sgs~dg~i~iwd~~~~~~~--~~--~~~~~h~~~v~~l~~~~~~~  407 (474)
                      ...|.-        +.            .-|.-+++......+.+|.-...-..  .+  .......+..++++.-|-+.
T Consensus       940 slaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen  940 SLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC 1019 (1034)
T ss_pred             eeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc
Confidence            222210        00            01345666666667777743211000  01  11223456678888888776


Q ss_pred             cccccceEEEEEecCCCcEEE
Q 047728          408 SLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       408 ~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                              -+..|...|.|.+
T Consensus      1020 --------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1020 --------AFLAGNEHGAIAL 1032 (1034)
T ss_pred             --------hhhccCCCCceee
Confidence                    5777888888775

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.13  E-value=7.4e-10  Score=93.23  Aligned_cols=230  Identities=20%  Similarity=0.282  Sum_probs=138.8

Q ss_pred             EEEEEEc-CCEEEEeeCCCcEEEEeCC--------------ccccccccCc--cCEEEEEecCCEEEEEeCCCeEEEEec
Q 047728          113 IYSLAAA-GDLLYTGSDSKNIRVWKNQ--------------REFSGFKSNS--GLVKAIVISNEKIFSGHQDGKIRVWKV  175 (474)
Q Consensus       113 i~~~~~~-~~~l~tgs~dg~v~vwd~~--------------~~~~~~~~h~--~~V~~i~~~~~~l~s~~~dg~i~vwd~  175 (474)
                      |..+.+. ...|+++..++.+......              .++..+..|.  ++-..+...++.++++..||.+.+.+.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            5555655 4466777666665554321              1223333333  334444444778999999999999998


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-----CCCcEEEEEcC
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-----WDKTFKVWRTS  250 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-----~dg~i~iwd~~  250 (474)
                      +..... ..++...                             |.+.. +.++...++.+.++.     .-+..++|+++
T Consensus       119 ~~~~~~-~~~i~~~-----------------------------~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~  167 (319)
T KOG4714|consen  119 DKDLAL-MSRIPSI-----------------------------HSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLD  167 (319)
T ss_pred             hHHHhh-hhhcccc-----------------------------ccccc-ccceeecccEEecCCcceEeeccceeeeccc
Confidence            762211 1111100                             11111 111222333333322     22346667665


Q ss_pred             CcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEE
Q 047728          251 DYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCG  327 (474)
Q Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~  327 (474)
                      ..+.+..-+.....|.+++-+|..  .+++|+.||.+-+||.+....     +...+..|+.+++.+-|+| ++..|+++
T Consensus       168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft~  242 (319)
T KOG4714|consen  168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFTC  242 (319)
T ss_pred             ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeEe
Confidence            433322222233458999988876  889999999999999986643     5667788999999999999 77899999


Q ss_pred             cCCCcEEEeecCccccc-----------------------ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEE
Q 047728          328 SSDGLVNFWERELNLSH-----------------------GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWR  378 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd  378 (474)
                      ++||.+.-||..+...-                       ..++......|..|..-|..|++|+.-+.|++++
T Consensus       243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            99999999997642110                       0011111222344444588888888888888775

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=6.2e-08  Score=93.77  Aligned_cols=236  Identities=10%  Similarity=-0.007  Sum_probs=133.3

Q ss_pred             cEEEEeCC-ccccccccCccCEEEEEecCC--E---EEEEeCCC--eEEEEecCCCCcceeeeecccCccceeeeeecCC
Q 047728          131 NIRVWKNQ-REFSGFKSNSGLVKAIVISNE--K---IFSGHQDG--KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKP  202 (474)
Q Consensus       131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~--~---l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (474)
                      .|.+.|.. .....+......+..-.|+++  .   +++...+|  .|.+.++.+++......                 
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-----------------  228 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-----------------  228 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------------
Confidence            45555532 233334445555666678733  3   23454444  46666777664322111                 


Q ss_pred             CCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-----CCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCC
Q 047728          203 SNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-----DKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDG  274 (474)
Q Consensus       203 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~  274 (474)
                                      ........+|+|||+.|+..+.     +-.+.+|++..+   +................|+|||
T Consensus       229 ----------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG  292 (428)
T PRK01029        229 ----------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG  292 (428)
T ss_pred             ----------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence                            2233446799999998886653     223444776653   2222222222344678999999


Q ss_pred             -eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeee
Q 047728          275 -LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLR  349 (474)
Q Consensus       275 -~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~  349 (474)
                       .|+.. ..+|...+|.+.......   ....+......+....|+|||+.|+....+   ..|.+||+.++....-...
T Consensus       293 ~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~  369 (428)
T PRK01029        293 TRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS  369 (428)
T ss_pred             CEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence             45544 457766677554321111   112222334466788999999988876543   3689999987754321111


Q ss_pred             ecceeeEEEEecCCEEEEEeC---CCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          350 GHKLAILCLVTAGNLVFSGSA---DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       350 ~~~~~v~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ........++++|+.|+....   ...|.++|+.+++...   +....+.+...+|+|-
T Consensus       370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~---Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK---IVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecCCCcccCceecCC
Confidence            122344678889988775433   3568888988776432   2234455667778764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=9.7e-10  Score=114.63  Aligned_cols=191  Identities=14%  Similarity=0.258  Sum_probs=143.6

Q ss_pred             eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728          215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~  292 (474)
                      ..+.+-..|.++.=+|...+.++|+.||.|++|....++.+..+.. ....|+.+.|+.+| .+..+..||.+.+|....
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC
Confidence            3455667889999899889999999999999999988888777753 33788899999888 899999999999998762


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc---CCCcEEEeecCcccccceeeeecc--eeeEEEEecCCEEEE
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS---SDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGNLVFS  367 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~s  367 (474)
                      .       +......|......+.|-.  ..+++++   .++.+.+||.-......-+...|.  ..++...|..++|++
T Consensus      2283 k-------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2283 K-------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred             c-------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe
Confidence            1       3445566777777777765  5555543   467899999654322222224454  555666788999999


Q ss_pred             EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       368 gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |+.+|.|++||++..+.  ...++.         +. ...        ++++|+..|.|+||++...
T Consensus      2354 ggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~--------~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE--------YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             cCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh--------eeeccCcccceEEEEcccc
Confidence            99999999999987652  233332         33 333        8999999999999999876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.1e-06  Score=78.34  Aligned_cols=265  Identities=11%  Similarity=0.187  Sum_probs=170.7

Q ss_pred             CCcEEEEeCCcc-----ccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCC--CcceeeeecccCccceee
Q 047728          129 SKNIRVWKNQRE-----FSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSK--DASIHKRVGTLPTFKDFI  196 (474)
Q Consensus       129 dg~v~vwd~~~~-----~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~  196 (474)
                      +.-|++|++...     ....-.+.+..+-|+++  ++.|+++..+   |.|-.|.++..  .....-+.          
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~----------   84 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ----------   84 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----------
Confidence            456999975421     22334567788889998  4468877654   77888888763  22211110          


Q ss_pred             eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcCC-cceee--eeeecCcc--------
Q 047728          197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTSD-YKCLE--SVIAHDDA--------  264 (474)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~-~~~~~--~~~~~~~~--------  264 (474)
                                        ..  ...+-..+++++++++|+++.. .|.|.++-++. |....  .+..|.+.        
T Consensus        85 ------------------~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~  144 (346)
T COG2706          85 ------------------TL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES  144 (346)
T ss_pred             ------------------cc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence                              00  1223378899999999998874 48899998865 43322  22345544        


Q ss_pred             --eeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecC
Q 047728          265 --VNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERE  339 (474)
Q Consensus       265 --v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~  339 (474)
                        +....+.|++ +|++.. .--.|.+|++..+.. ..  ............+.|.|+|++++.++.++ +++|.+|..+
T Consensus       145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L-~~--~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL-TP--ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             CccceeeeCCCCCEEEEeecCCceEEEEEcccCcc-cc--ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence              7888899999 444433 234689999884332 11  11222255677899999999999887765 7899999877


Q ss_pred             cccccceee-----------eecceeeEEEEecCCEEEEEeC-CCcEEEEECCC--CceEEEEeecCCccceEEEEEeeC
Q 047728          340 LNLSHGGVL-----------RGHKLAILCLVTAGNLVFSGSA-DMSICIWRRKE--NEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       340 ~~~~~~~~~-----------~~~~~~v~~~~~~~~~l~sgs~-dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ........+           .......+.++++|++|+++.. ...|.+|.+..  ++...+.....+...-+.+.|++.
T Consensus       222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~  301 (346)
T COG2706         222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS  301 (346)
T ss_pred             CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC
Confidence            641111111           1223455778899999998874 34788887753  343334444445555789999999


Q ss_pred             CccccccceEEEEEecC-CCcEEEEEccCC
Q 047728          406 DESLSREKRWILYSGSL-DKSVKMWRVSEQ  434 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~-Dg~i~vw~~~~~  434 (474)
                      ++        +|+.+.. +..|.+|.+...
T Consensus       302 g~--------~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         302 GR--------FLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CC--------EEEEEccCCCcEEEEEEcCC
Confidence            98        6666654 457999998764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=2e-09  Score=102.69  Aligned_cols=216  Identities=13%  Similarity=0.100  Sum_probs=159.0

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---------------eeeeeeecCcceeEEEecCCC-eEEEeeCC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---------------CLESVIAHDDAVNSIVAGFDG-LVFTGSAD  282 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d  282 (474)
                      ......|+.|+....++++|+.||.+++..+.+..               .-+++.+|...|.-+.|+.+. .|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            44567899999999999999999999999775421               224677899999999999887 88999999


Q ss_pred             CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC
Q 047728          283 GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG  362 (474)
Q Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~  362 (474)
                      |.|.+|-+-.+.-    .....-....+.|.+++|+.+|..++....||.|.+=.++.+......+.+....-+.+++|.
T Consensus        93 GlIiVWmlykgsW----~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSW----CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDL  168 (1189)
T ss_pred             ceEEEEeeecccH----HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccH
Confidence            9999997653321    111222345667999999999999999999999999888777666666666666667788898


Q ss_pred             CEEEEEeCCCcEEEEECCCCc-----eEEEE----eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          363 NLVFSGSADMSICIWRRKENE-----HICLS----MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       363 ~~l~sgs~dg~i~iwd~~~~~-----~~~~~----~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.++.+-..|.+.+||.+..-     ..+..    .+......|..+.|.........+.+..|+.+-..|.++|-+-.+
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            888888899999999986531     11111    112222346677776543333344556999999999999987665


Q ss_pred             CCCCC
Q 047728          434 QAPPL  438 (474)
Q Consensus       434 ~~~~~  438 (474)
                      ...|.
T Consensus       249 D~~Pv  253 (1189)
T KOG2041|consen  249 DPEPV  253 (1189)
T ss_pred             CCCCe
Confidence            54443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.08  E-value=2.2e-07  Score=85.08  Aligned_cols=168  Identities=15%  Similarity=0.099  Sum_probs=123.2

Q ss_pred             CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCC-eEEEEecCCCCcceeeeecccCccceee
Q 047728          120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDG-KIRVWKVSSKDASIHKRVGTLPTFKDFI  196 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~  196 (474)
                      |++++..|. |.+.|.+.......--+|.+.|.-..+.  ++.++.|..|| .+-|+|.++++...              
T Consensus       332 Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr--------------  396 (668)
T COG4946         332 GDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR--------------  396 (668)
T ss_pred             CcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE--------------
Confidence            888888874 5677766444444445677778877776  66899999999 89999999886432              


Q ss_pred             eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728          197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L  275 (474)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~  275 (474)
                                         +.+.-+.|.++..+++|+.++.+.....|.+.|+.++.....-+...+-|+.+.|+|++ .
T Consensus       397 -------------------~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~  457 (668)
T COG4946         397 -------------------IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW  457 (668)
T ss_pred             -------------------eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee
Confidence                               22356678999999999999999999999999999998766656667889999999999 7


Q ss_pred             EEEeeCCC----cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          276 VFTGSADG----TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       276 l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      ++-+--+|    .|+++|+..++.       -........=.+-+|.|++++|+--+
T Consensus       458 iAYafP~gy~tq~Iklydm~~~Ki-------y~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         458 IAYAFPEGYYTQSIKLYDMDGGKI-------YDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEEecCcceeeeeEEEEecCCCeE-------EEecCCcccccCcccCCCCcEEEEEe
Confidence            77766665    589999875432       11111222234457888888776543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.06  E-value=7.4e-07  Score=79.34  Aligned_cols=236  Identities=14%  Similarity=0.188  Sum_probs=150.7

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCC--ccee--eeeeecCcceeEEEecCCC-eEEEeeC-CCcEEEEE
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSD--YKCL--ESVIAHDDAVNSIVAGFDG-LVFTGSA-DGTVKVWR  289 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~--~~~~--~~~~~~~~~v~~v~~~~~~-~l~~~~~-dg~i~iwd  289 (474)
                      +....+-|+|+|++++|+++-.+   |.|-.|.+..  |+..  ........+.+.+++++++ .++++.. .|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            66778899999999999988654   7787777764  4432  2222233445889999999 6665554 58899998


Q ss_pred             cccCCCceeeeeeeeeeccccc----------EEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccc----eeeeeccee
Q 047728          290 RELQGKGTKHFFSQTLLKQECA----------VTALAISPDAAIVYCGSS-DGLVNFWERELNLSHG----GVLRGHKLA  354 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~----~~~~~~~~~  354 (474)
                      ++..+....   ......|.+.          +....+.|++++|++.+- .-.|.+|++..+....    ....+....
T Consensus       118 ~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         118 LQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             cccCCcccc---ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            875433211   1112222222          888999999999988754 3469999988553221    223344455


Q ss_pred             eEEEEecCCEEEEEe-CCCcEEEEECCC--CceEEEEeecC------CccceEEEEEeeCCccccccceEEEEEec-CCC
Q 047728          355 ILCLVTAGNLVFSGS-ADMSICIWRRKE--NEHICLSMLTG------HSGPVKCLAVEKDDESLSREKRWILYSGS-LDK  424 (474)
Q Consensus       355 v~~~~~~~~~l~sgs-~dg~i~iwd~~~--~~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg  424 (474)
                      -+.|+|++++.+... -+++|.+|....  ++...+..+..      -.....+|.+++|++        +|+++. ...
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--------FLYasNRg~d  266 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--------FLYASNRGHD  266 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC--------EEEEecCCCC
Confidence            689999999988776 489999999976  33333332211      234577889999999        777663 234


Q ss_pred             cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          425 SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       425 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      .|-+|.+......+   ........+.......    .|+++|++|+-
T Consensus       267 sI~~f~V~~~~g~L---~~~~~~~teg~~PR~F----~i~~~g~~Lia  307 (346)
T COG2706         267 SIAVFSVDPDGGKL---ELVGITPTEGQFPRDF----NINPSGRFLIA  307 (346)
T ss_pred             eEEEEEEcCCCCEE---EEEEEeccCCcCCccc----eeCCCCCEEEE
Confidence            78888887653221   1222222333334555    56777887753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=2.1e-07  Score=85.24  Aligned_cols=210  Identities=10%  Similarity=0.082  Sum_probs=139.9

Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-------Cc-----c---eeEEEecCCCeEEEeeCCCcEEEEEcccC
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-------DD-----A---VNSIVAGFDGLVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~-----~---v~~v~~~~~~~l~~~~~dg~i~iwd~~~~  293 (474)
                      +.||+.++-. ..|.|.+||..+.+.. .+.-.       ..     +   ....+..+..+++..+ -|...+.+...+
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~  351 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDG  351 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCC
Confidence            5688877653 4588999998765432 22110       00     0   1112222222555544 455555543322


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM  372 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg  372 (474)
                              .....++...|.-..+..+++-++.|..|| .+-+||.++++.......-.....+.++++|++++.+....
T Consensus       352 --------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~  423 (668)
T COG4946         352 --------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF  423 (668)
T ss_pred             --------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence                    123345666688888888888889999999 89999999886433222233445577788999999999999


Q ss_pred             cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC----cEEEEEccCCCCCCCCCccccccc
Q 047728          373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK----SVKMWRVSEQAPPLVSTTQQHPLE  448 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg----~i~vw~~~~~~~~~~~~~~~~~~~  448 (474)
                      .|.+.|+.+++...  .-+...+-|+.+.|+|+++        ++|-+--+|    .|+++|+..++....         
T Consensus       424 el~vididngnv~~--idkS~~~lItdf~~~~nsr--------~iAYafP~gy~tq~Iklydm~~~Kiy~v---------  484 (668)
T COG4946         424 ELWVIDIDNGNVRL--IDKSEYGLITDFDWHPNSR--------WIAYAFPEGYYTQSIKLYDMDGGKIYDV---------  484 (668)
T ss_pred             EEEEEEecCCCeeE--ecccccceeEEEEEcCCce--------eEEEecCcceeeeeEEEEecCCCeEEEe---------
Confidence            99999999998432  2234567899999999999        788776665    689999988632211         


Q ss_pred             CCCCCCCccccCCCCCcCCceee
Q 047728          449 GHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       449 ~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                         ...++-.|+|+|.|||+.|-
T Consensus       485 ---TT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         485 ---TTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             ---cCCcccccCcccCCCCcEEE
Confidence               12356679999999999873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=6.5e-07  Score=95.67  Aligned_cols=207  Identities=10%  Similarity=0.092  Sum_probs=132.1

Q ss_pred             CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeec-----------------CcceeEEEecCC-C-eEEEee
Q 047728          221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH-----------------DDAVNSIVAGFD-G-LVFTGS  280 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~v~~~~~-~-~l~~~~  280 (474)
                      .....|++.++++.|+++. .++.|+++|..++. +.++.+-                 -.....++++++ + .+++..
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            4467899999888776655 45779999987754 3333210                 113467899984 5 566777


Q ss_pred             CCCcEEEEEcccCCCceeee--eeeee------ecccccEEEEEEcCCCCEEE-EEcCCCcEEEeecCccccccee----
Q 047728          281 ADGTVKVWRRELQGKGTKHF--FSQTL------LKQECAVTALAISPDAAIVY-CGSSDGLVNFWERELNLSHGGV----  347 (474)
Q Consensus       281 ~dg~i~iwd~~~~~~~~~~~--~~~~~------~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~----  347 (474)
                      .++.|++||..........-  .....      ...-.....++++|++..|+ +-..++.|++||+.++......    
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            78899999976432100000  00000      01123466799999998554 5556789999998765321000    


Q ss_pred             --------ee---e-------cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEe-----------ecCCccceE
Q 047728          348 --------LR---G-------HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM-----------LTGHSGPVK  398 (474)
Q Consensus       348 --------~~---~-------~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-----------~~~h~~~v~  398 (474)
                              +.   +       ....-++++++|+++++-..++.|++||..++....+..           ..+.-....
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~  862 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA  862 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence                    00   0       011235677889988888899999999998775322111           011223577


Q ss_pred             EEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          399 CLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       399 ~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      .++++++++        ++++-+.+++|++|++.++..
T Consensus       863 GIavd~dG~--------lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        863 GLALGENGR--------LFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEeCCCC--------EEEEECCCCEEEEEECCCCcc
Confidence            899999998        888999999999999987643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=8.9e-08  Score=81.29  Aligned_cols=196  Identities=10%  Similarity=-0.063  Sum_probs=131.4

Q ss_pred             CCCEEEEEECCCcEEEEEcCCccee-eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCL-ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK  307 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  307 (474)
                      .-.+|+.|+..|.+.+|...+.+.. .....|...|.-+.=..+.  .+..++.|.++++.+++.......      ...
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------~h~  156 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------VHN  156 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce------eec
Confidence            3458999999999999998865433 3333344433322211122  678889999999998875443211      111


Q ss_pred             ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-ce-eeeec--ceeeEEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728          308 QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-GG-VLRGH--KLAILCLVTAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       308 ~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~-~~~~~--~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ..-.+.+++++++++++++.+....|..|.+...... .. .....  .+...+++.....+|++..||++.|||++...
T Consensus       157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            1123788999999999999999999999988654322 12 12222  23445666678899999999999999998654


Q ss_pred             eEE---EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728          384 HIC---LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL  438 (474)
Q Consensus       384 ~~~---~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~  438 (474)
                      ...   ..+-..|.+.+..+.|++-+...      +|+-.-.=+.+.+-|+++.....
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lD------LLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLD------LLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcce------EEEEecCcceEEEEEcccCceee
Confidence            221   22334689999999999866522      44444455789999999875443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.98  E-value=4.4e-07  Score=87.50  Aligned_cols=265  Identities=11%  Similarity=0.037  Sum_probs=153.0

Q ss_pred             EEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728          117 AAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      ...++.++.++.+|.+..+|.  ++.+-...............++.++.+..+|.|..+|..+++.......... ..  
T Consensus       117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~--  193 (394)
T PRK11138        117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SL--  193 (394)
T ss_pred             EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cc--
Confidence            344677778888899998884  3444333332222222233477888888999999999999887654432210 00  


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc-------ceeE
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD-------AVNS  267 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~  267 (474)
                                          ...+...++    .  .+..++.++.++.+..+|..+++.+........       ....
T Consensus       194 --------------------~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~  247 (394)
T PRK11138        194 --------------------TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD  247 (394)
T ss_pred             --------------------cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence                                000011111    1  123577778889999999999887665432110       0001


Q ss_pred             EEec---CCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728          268 IVAG---FDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH  344 (474)
Q Consensus       268 v~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  344 (474)
                      +...   .++.+++++.+|.+..+|..++......    ..    .....+.  ..+..+++++.+|.+..+|..+++..
T Consensus       248 ~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~----~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        248 VDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EY----GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             cCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cC----CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence            1111   1457777888999999998765432111    11    1111111  24667888889999999999887543


Q ss_pred             ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728          345 GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK  424 (474)
Q Consensus       345 ~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg  424 (474)
                      -................+.+|+.++.||.|.+.|..+++..  ....-....+..--...++         .|+.++.||
T Consensus       318 W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~--~~~~~~~~~~~s~P~~~~~---------~l~v~t~~G  386 (394)
T PRK11138        318 WSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFV--AQQKVDSSGFLSEPVVADD---------KLLIQARDG  386 (394)
T ss_pred             EcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEE--EEEEcCCCcceeCCEEECC---------EEEEEeCCc
Confidence            32211101111111224778899999999999999998843  3333222223221112233         588889999


Q ss_pred             cEEEEEc
Q 047728          425 SVKMWRV  431 (474)
Q Consensus       425 ~i~vw~~  431 (474)
                      .|..++.
T Consensus       387 ~l~~~~~  393 (394)
T PRK11138        387 TVYAITR  393 (394)
T ss_pred             eEEEEeC
Confidence            9988764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=2.3e-07  Score=86.70  Aligned_cols=249  Identities=12%  Similarity=0.122  Sum_probs=156.1

Q ss_pred             EEEEEc-CCEEEEeeCCCcEEEEeCCcc-ccccccCccCEEEEEecCC----EEEE-----EeCCCeEEEEecCCCCcce
Q 047728          114 YSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGFKSNSGLVKAIVISNE----KIFS-----GHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       114 ~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~~~h~~~V~~i~~~~~----~l~s-----~~~dg~i~vwd~~~~~~~~  182 (474)
                      |+..|+ .+.|+.=-..+.|.+|+...- ....+-|...|+.+.++..    .+++     .+.-..|+||...-.....
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~  208 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ  208 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence            455555 344444444567999986651 1222346777888888722    3332     4556679999887322111


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC-EEEEEE-----------CCCcEEEEEcC
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN-LLYSAS-----------WDKTFKVWRTS  250 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s-----------~dg~i~iwd~~  250 (474)
                      ....      +.++                       ...=-.+.|++-+. +|+.++           ...++++.++.
T Consensus       209 ~~a~------ksFF-----------------------kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~  259 (566)
T KOG2315|consen  209 PVAN------KSFF-----------------------KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ  259 (566)
T ss_pred             hhhh------cccc-----------------------ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence            0000      0000                       00111345555332 222222           23568888887


Q ss_pred             CcceeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728          251 DYKCLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG  327 (474)
Q Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  327 (474)
                      ...+...+. ..++|.++.|++++   -++.|-.=..+.|||++-         .....-.+++=.++-|+|.|++|+.+
T Consensus       260 g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---------~~v~df~egpRN~~~fnp~g~ii~lA  329 (566)
T KOG2315|consen  260 GESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---------KPVFDFPEGPRNTAFFNPHGNIILLA  329 (566)
T ss_pred             CceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---------CEeEeCCCCCccceEECCCCCEEEEe
Confidence            444444443 47899999999999   355566678899999872         23444456677889999999998887


Q ss_pred             cC---CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC------CCcEEEEECCCCceEEEEeecCCccceE
Q 047728          328 SS---DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA------DMSICIWRRKENEHICLSMLTGHSGPVK  398 (474)
Q Consensus       328 ~~---dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~h~~~v~  398 (474)
                      +-   .|.|-+||+.+.+.+ ..+......+..++|||+++++++.      |+.++||+...... ....+.   ....
T Consensus       330 GFGNL~G~mEvwDv~n~K~i-~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l-~~~~f~---sEL~  404 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNRKLI-AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL-HEKMFK---SELL  404 (566)
T ss_pred             ecCCCCCceEEEeccchhhc-cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee-ehhhhh---HhHh
Confidence            65   478999999985444 5566677788999999999999874      78899999875431 111121   1567


Q ss_pred             EEEEeeCC
Q 047728          399 CLAVEKDD  406 (474)
Q Consensus       399 ~l~~~~~~  406 (474)
                      .+.|-|-.
T Consensus       405 qv~W~P~~  412 (566)
T KOG2315|consen  405 QVEWRPFN  412 (566)
T ss_pred             heeeeecC
Confidence            77777643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=4.2e-08  Score=94.82  Aligned_cols=338  Identities=14%  Similarity=0.091  Sum_probs=197.6

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--------------CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec----
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--------------GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS----  157 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--------------~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~----  157 (474)
                      ...+++.++..|...|+.+.+.              .-+||++.-.|.|.+||.  ...+..+..|..+|..++|-    
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence            3456777888899999888754              126788888999999994  45566778889999999884    


Q ss_pred             --CCEEEEEeCCCeEEEEecCCCCcceeeeecccCc---------cceee---------eeecCCCCeEEEeeeccceee
Q 047728          158 --NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT---------FKDFI---------KCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       158 --~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~~~~~---------~~~~~~~~~~~~~~~~~~~~~  217 (474)
                        .+.|++-....+|.+|+.++++............         ...++         .+..-+...-....++-.+-.
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s  202 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS  202 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence              3577888888899999999987765433322111         11111         111100000000000000001


Q ss_pred             eccC----------------C---------eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728          218 KHFD----------------A---------ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF  272 (474)
Q Consensus       218 ~h~~----------------~---------V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  272 (474)
                      .|.+                .         .-.++|+|.-+.++-......+.++|++-..++....-..+.+.-+.+.|
T Consensus       203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP  282 (1062)
T KOG1912|consen  203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP  282 (1062)
T ss_pred             CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence            1111                0         11356677555555555678899999998888888877778788888888


Q ss_pred             CC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc-----------EEEEEEcCC-CCEEEEEcCCCcEEEee
Q 047728          273 DG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA-----------VTALAISPD-AAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       273 ~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----------v~~l~~~~~-~~~l~~~~~dg~i~v~d  337 (474)
                      +.   .|++.-.||.+.+|-.+....................           +......|. ...++.--.+|.+.+|.
T Consensus       283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~  362 (1062)
T KOG1912|consen  283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ  362 (1062)
T ss_pred             CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence            87   7999999999999976542221111000000011111           222233343 44555556788899999


Q ss_pred             cCcccccceeeeecceeeEEEEecCC-------EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC----
Q 047728          338 RELNLSHGGVLRGHKLAILCLVTAGN-------LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD----  406 (474)
Q Consensus       338 ~~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~----  406 (474)
                      +.++........+...-+.-|++++.       .+..-+.||                   +|....++....|-.    
T Consensus       363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg-------------------~h~sGs~~~~~~p~p~~t~  423 (1062)
T KOG1912|consen  363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG-------------------SHSSGSTCVRMRPMPELTK  423 (1062)
T ss_pred             hhcCCcCcccccccccccccccccCceeehhhccccchhhcC-------------------CCCCCceeeecccCcccce
Confidence            88764433222222222333444332       222333333                   333333333333221    


Q ss_pred             ------ccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          407 ------ESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       407 ------~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                            .........++|.|...|+|.++|+.++       .....+..|...|.++.|--
T Consensus       424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-------~v~~~fsvht~~VkgleW~g  477 (1062)
T KOG1912|consen  424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-------AVAASFSVHTSLVKGLEWLG  477 (1062)
T ss_pred             eecCCCCCccceeeeeEEeecCCceEEEEEecch-------hhhhhhcccccceeeeeecc
Confidence                  1111222348999999999999999998       45556777888888887643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.95  E-value=1.6e-06  Score=91.05  Aligned_cols=309  Identities=15%  Similarity=0.096  Sum_probs=178.5

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEE----eCCcc-ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCc
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVW----KNQRE-FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDA  180 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vw----d~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~  180 (474)
                      .+.|.++.+-  .+-|+.+..+|.|.+.    +.... +.....-...|.+++|+  ++.|+....+++|.+-+.+- +.
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f-d~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF-DP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc-eE
Confidence            4568887765  5678888889999988    54332 23333456789999999  55788888888888765322 11


Q ss_pred             ceeeeeccc-CccceeeeeecC-------CCCeEE----Ee-----eeccceeeeccCCeeEEEecCCCCEEEEEEC---
Q 047728          181 SIHKRVGTL-PTFKDFIKCSMK-------PSNYIE----VR-----RHRNGLWIKHFDAISSLSMSEDQNLLYSASW---  240 (474)
Q Consensus       181 ~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~----~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---  240 (474)
                      +....+... ......+.....       +...-.    .+     ....+.+. +.+.-..|+|-.||.++|+.+.   
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence            111111100 000011111000       000000    00     00112233 5556778999999999998774   


Q ss_pred             C---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC---CCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728          241 D---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA---DGTVKVWRRELQGKGTKHFFSQTLLKQECAVT  313 (474)
Q Consensus       241 d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  313 (474)
                      .   ..|+||+- .|+...+-..-.+--.+++|.|.| ++++...   ...|.+|..+....+  . +..........|.
T Consensus       233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--e-F~l~~~~~~~~v~  308 (928)
T PF04762_consen  233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--E-FTLRFDPEEEKVI  308 (928)
T ss_pred             CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--e-EecCCCCCCceee
Confidence            2   57999984 466554444434445678999999 5554433   245777765422211  1 2222235567899


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEeecCcccc-cceeee-ecce--eeEEEEec-CCEEEEEeCCCcEEEEECC----CC--
Q 047728          314 ALAISPDAAIVYCGSSDGLVNFWERELNLS-HGGVLR-GHKL--AILCLVTA-GNLVFSGSADMSICIWRRK----EN--  382 (474)
Q Consensus       314 ~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~-~~~~--~v~~~~~~-~~~l~sgs~dg~i~iwd~~----~~--  382 (474)
                      .+.|++++..|++...|. |.+|-..+..- +.+.+. ....  ..+.|++. ...|...+.+|.+..++..    .+  
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~  387 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG  387 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence            999999999999987665 99998765521 111221 1111  22445542 4456666665666544431    11  


Q ss_pred             --------------ceEEE--------------EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          383 --------------EHICL--------------SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       383 --------------~~~~~--------------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                                    ....+              ..+ ....+|.+++|++++.        .+++-..||.|.+|.....
T Consensus       388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~--------~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNS--------RFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCC--------eEEEEECCCCEEEEEecCC
Confidence                          00001              111 1346899999999987        6888899999999996554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.92  E-value=1e-06  Score=84.92  Aligned_cols=268  Identities=10%  Similarity=0.094  Sum_probs=155.0

Q ss_pred             cCCEEEEeeCCCcEEEEeCC--ccccccccCc----------cC-EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          119 AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS----------GL-VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       119 ~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~----------~~-V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      .++.+++++.+|.|.-+|..  +.+-......          .. ...+...++.++.++.+|.+..+|.++++......
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            46677777777777777633  2222111110          01 11244567888999999999999999998766443


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV  265 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v  265 (474)
                      .....                            ...+    .+  .+..++.+..++.|..+|.++|+.+..........
T Consensus       148 ~~~~~----------------------------~ssP----~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        148 VAGEA----------------------------LSRP----VV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             CCCce----------------------------ecCC----EE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence            22100                            1111    11  24467778889999999999999887775421110


Q ss_pred             -----eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc-ccEEEEEEcC--CCCEEEEEcCCCcEEEee
Q 047728          266 -----NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE-CAVTALAISP--DAAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       266 -----~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~~~~~dg~i~v~d  337 (474)
                           ..-... ++.++.++.+|.+..+|...+................ .....+..+|  .+..+++++.+|.+..+|
T Consensus       194 ~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        194 TLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             cccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence                 111111 3467778889999988887654322111100000000 0011111222  355677778899999999


Q ss_pred             cCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc-cceEEEEEeeCCccccccceEE
Q 047728          338 RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS-GPVKCLAVEKDDESLSREKRWI  416 (474)
Q Consensus       338 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~  416 (474)
                      ..++...-....+   ....+...+..++.++.+|.+..+|..+++..  .....-. .......+. ++         .
T Consensus       273 ~~tG~~~W~~~~~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~--W~~~~~~~~~~~sp~v~-~g---------~  337 (394)
T PRK11138        273 LRSGQIVWKREYG---SVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL--WSQSDLLHRLLTAPVLY-NG---------Y  337 (394)
T ss_pred             CCCCCEEEeecCC---CccCcEEECCEEEEEcCCCeEEEEECCCCcEE--EcccccCCCcccCCEEE-CC---------E
Confidence            9888654332211   11223446788888999999999999988742  2221111 111222222 22         6


Q ss_pred             EEEecCCCcEEEEEccCCCC
Q 047728          417 LYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       417 l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      |+.++.||.|.+.|..+++.
T Consensus       338 l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        338 LVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             EEEEeCCCEEEEEECCCCCE
Confidence            78889999999999988743

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.92  E-value=2e-08  Score=84.79  Aligned_cols=205  Identities=18%  Similarity=0.179  Sum_probs=120.2

Q ss_pred             EEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728          151 VKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS  229 (474)
Q Consensus       151 V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  229 (474)
                      |..+.+. ...|+++..++.+.......+.+....+...                    .-.+...+..|..+-.+-+.+
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~--------------------~i~~~~~~a~~sep~p~~~~s   98 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDD--------------------GIDPFKVLAKNSEIDPNDACT   98 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhccc--------------------CcCceeeeeccCCCCCccccc
Confidence            5666666 5578888888777665544332211000000                    000001122244433333334


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCccee-eeeeecCcceeEEEecCCCeEEEee------CCCcEEEEEcccCCCceeeeee
Q 047728          230 EDQNLLYSASWDKTFKVWRTSDYKCL-ESVIAHDDAVNSIVAGFDGLVFTGS------ADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      -.++.++++..||.+.+++.+....+ ..+..-...-.+.++...+.++...      .-+..+.|+++..+.     +.
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t-----~~  173 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT-----LI  173 (319)
T ss_pred             ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc-----cc
Confidence            45678999999999999997652111 1111111111112222233233322      234456677664332     11


Q ss_pred             eeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEE
Q 047728          303 QTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWR  378 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd  378 (474)
                      .. ......|++++-+| ..+.+++|+.||.+.+||.++...+...+..|+..+..+.+   ++..|+++++||.+..||
T Consensus       174 ~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  174 PS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             cc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            11 12223499999999 55677889999999999999887777788899988866554   578999999999999999


Q ss_pred             CCC
Q 047728          379 RKE  381 (474)
Q Consensus       379 ~~~  381 (474)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.92  E-value=2.3e-07  Score=78.80  Aligned_cols=190  Identities=13%  Similarity=0.038  Sum_probs=129.6

Q ss_pred             CCEEEEeeCCCcEEEEeCCcc---ccccccCccCEE---EEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728          120 GDLLYTGSDSKNIRVWKNQRE---FSGFKSNSGLVK---AIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~---~~~~~~h~~~V~---~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      -.+||.|+..|...+|.....   ......|...|+   ..+-..-.+..++.|.++++.+++.+......         
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---------  154 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---------  154 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---------
Confidence            348999999999999974421   222223333222   22223446788899999999988765432111         


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCC--eeEEEecCCCCEEEEEECCCcEEEEEcCCc-ceeee--eeecCcceeEE
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDA--ISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KCLES--VIAHDDAVNSI  268 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~--~~~~~~~v~~v  268 (474)
                                               |...  +.+++++++++++++.+....|..|.+... +.+..  .....+.-.+.
T Consensus       155 -------------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  155 -------------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             -------------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence                                     3333  788999999999999999999999988643 32222  22233444566


Q ss_pred             EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC--EEEEEcCCCcEEEeecCccccc
Q 047728          269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA--IVYCGSSDGLVNFWERELNLSH  344 (474)
Q Consensus       269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~  344 (474)
                      .|+... .++++..||++.|||++........ .......|.+.++.+.|++.|.  +|+..-.-+.+.+.|+++....
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            787777 9999999999999999976543222 2334455899999999998553  4555555678899999877554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=2.6e-08  Score=95.70  Aligned_cols=267  Identities=13%  Similarity=0.132  Sum_probs=174.2

Q ss_pred             CEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC--CeeE
Q 047728          150 LVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD--AISS  225 (474)
Q Consensus       150 ~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~  225 (474)
                      .+.++..+  ++-++.++.-| +.+-|++..-....                                |..|..  .|-.
T Consensus        26 ~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr--------------------------------~l~h~tpw~vad   72 (1081)
T KOG0309|consen   26 GFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR--------------------------------WLHHITPWQVAD   72 (1081)
T ss_pred             cccceeeccccchhhhhhhcC-eEEEeccCCCCCce--------------------------------eeeccCcchhcc
Confidence            34444444  77788888877 56667765322111                                111222  3556


Q ss_pred             EEecCC--CCEEEEEECCCcEEEEEcCC---cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728          226 LSMSED--QNLLYSASWDKTFKVWRTSD---YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       226 l~~~~~--~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      +.|++.  ..+-++......-.+|++..   ...-..+.+|...|+.+.|+++.  .+++++.|-.+..||++....   
T Consensus        73 ~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---  149 (1081)
T KOG0309|consen   73 VQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---  149 (1081)
T ss_pred             eecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---
Confidence            667663  33444444556677888753   33445667899999999999988  899999999999999986554   


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec---CCEEEEEeCCCcEE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSIC  375 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~  375 (474)
                        .......-......+.|+-....+++.+....|.+||++.+..+...+++|...+..+.++   ...+.+.+.|++|+
T Consensus       150 --p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk  227 (1081)
T KOG0309|consen  150 --PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK  227 (1081)
T ss_pred             --ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence              3344444556677889998666666677888899999999988878888877777766654   56788999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC---CCCCcccccccCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP---LVSTTQQHPLEGHGV  452 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~  452 (474)
                      .||......... .......+|..-++.|-++..      ++.---.+..+.+++-++....   .....+.+.+.||..
T Consensus       228 fw~y~kSt~e~~-~~vtt~~piw~~r~~Pfg~g~------~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D  300 (1081)
T KOG0309|consen  228 FWDYSKSTTESK-RTVTTNFPIWRGRYLPFGEGY------CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD  300 (1081)
T ss_pred             eecccccccccc-eeccccCcceeccccccCcee------EeccccCCeeeeeccccchhhhhccccCCcceeeecCcch
Confidence            999875543222 222345577777777766521      1211111224444433322111   112367788999999


Q ss_pred             CCCccccCC
Q 047728          453 APNSLPYAP  461 (474)
Q Consensus       453 ~v~~l~~~p  461 (474)
                      .|....|.-
T Consensus       301 ~V~eFlWR~  309 (1081)
T KOG0309|consen  301 VVLEFLWRK  309 (1081)
T ss_pred             HHHHHhhhh
Confidence            988877754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=4.4e-08  Score=87.85  Aligned_cols=157  Identities=17%  Similarity=0.176  Sum_probs=110.6

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcce----eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC----LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      ....+..++.+++||.+..+....++++.....    +..... ...-+++.+..+. ....+..-|.++-+|+-.... 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence            344556678889999998888877877754332    222211 2233444444443 444444444444443322111 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEeCCCcEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGSADMSIC  375 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~  375 (474)
                         .......+|-+-++.++|+||+++|+++..|..|++-.......+..+..||...|..++- ++..|++|+.|++|+
T Consensus       142 ---~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  142 ---GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLR  218 (390)
T ss_pred             ---cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEE
Confidence               1346677899999999999999999999999999998777777777788899999988876 466789999999999


Q ss_pred             EEECCCCc
Q 047728          376 IWRRKENE  383 (474)
Q Consensus       376 iwd~~~~~  383 (474)
                      +||+.+++
T Consensus       219 ~Wd~~sgk  226 (390)
T KOG3914|consen  219 LWDITSGK  226 (390)
T ss_pred             EEecccCC
Confidence            99999887

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=2.7e-09  Score=98.96  Aligned_cols=211  Identities=19%  Similarity=0.236  Sum_probs=139.0

Q ss_pred             eeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-------cceeeeeeecCcceeEEEecCCCeEEEeeC
Q 047728          209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-------YKCLESVIAHDDAVNSIVAGFDGLVFTGSA  281 (474)
Q Consensus       209 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~  281 (474)
                      ...+...+.+|+..|..++--.+.+-+++++.|++|++|.++.       ..|..++..|+.+|.++.|..+.. ..++.
T Consensus       724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc  802 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC  802 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec
Confidence            3344456788999999998877888999999999999999863       346778889999999999987752 23467


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeee----e--ccee
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLR----G--HKLA  354 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~----~--~~~~  354 (474)
                      ||.|++||.-.+.... ...-....+..+.|.|+.- -+...++++ +...+|+++|.+..........    +  ....
T Consensus       803 D~giHlWDPFigr~La-q~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLA-QMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             cCcceeecccccchhH-hhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            8999999964332210 0001111122223333321 134445444 7788999999887644332221    1  2234


Q ss_pred             eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE-EEccC
Q 047728          355 ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM-WRVSE  433 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v-w~~~~  433 (474)
                      .+++.+.|+.++++-..|.|.+.|.+++..  +..+.........++- |.++        .|+....|.++.| |.-..
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqlaa-psdq--------~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLAA-PSDQ--------ALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhcC-chhH--------HHHhhcccceeEeeehhcC
Confidence            466777899999999999999999999973  4444443333333332 3333        6777777888888 76544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.9e-08  Score=89.29  Aligned_cols=246  Identities=18%  Similarity=0.136  Sum_probs=165.5

Q ss_pred             eecCcEEEEEEc-CCEEEEeeCCCcEEEEeCCc-----cccccccCccCEEEEEec--CCEEEEEeC-CCeEEEEecCCC
Q 047728          108 REEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQR-----EFSGFKSNSGLVKAIVIS--NEKIFSGHQ-DGKIRVWKVSSK  178 (474)
Q Consensus       108 ~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~-----~~~~~~~h~~~V~~i~~~--~~~l~s~~~-dg~i~vwd~~~~  178 (474)
                      -|++.|+.+.+. .+++.+++.||.++.|.-..     -+..+..|.+.|.+++.+  +..+.|.+. |..++++|+++-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            378889988888 88999999999999997433     355677888888888777  556777677 999999999987


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcc--ee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYK--CL  255 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~--~~  255 (474)
                      ....-.....+|...++..+                    ..+.+.         .|+ +.-.++.+.++|-....  ..
T Consensus        87 DminmiKL~~lPg~a~wv~s--------------------kGd~~s---------~IAVs~~~sg~i~VvD~~~d~~q~~  137 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTS--------------------KGDKIS---------LIAVSLFKSGKIFVVDGFGDFCQDG  137 (558)
T ss_pred             chhhhcccccCCCceEEecC--------------------CCCeee---------eEEeecccCCCcEEECCcCCcCccc
Confidence            66544443333332211110                    011111         222 23367889999876443  23


Q ss_pred             eeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC---c------eeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          256 ESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK---G------TKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       256 ~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~---~------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      ..-.-|..+|..+.+.+-+ .+++....|.|.-|..+..-+   .      ........+........++.|+|++..+.
T Consensus       138 ~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis  217 (558)
T KOG0882|consen  138 YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS  217 (558)
T ss_pred             eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence            3335689999999999988 888888899999998763100   0      00111222334567789999999999999


Q ss_pred             EEcCCCcEEEeecCcccccceee-------------------------------eecc---eeeEEEEecCCEEEEEeCC
Q 047728          326 CGSSDGLVNFWERELNLSHGGVL-------------------------------RGHK---LAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~-------------------------------~~~~---~~v~~~~~~~~~l~sgs~d  371 (474)
                      +-..|..|++++..++.....+.                               ..|.   ..-.+|.-.+++|+-|+.=
T Consensus       218 tl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~  297 (558)
T KOG0882|consen  218 TLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL  297 (558)
T ss_pred             ccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce
Confidence            99999999999977664321110                               0111   1124555568899888766


Q ss_pred             CcEEEEECCCCc
Q 047728          372 MSICIWRRKENE  383 (474)
Q Consensus       372 g~i~iwd~~~~~  383 (474)
                      | |++.++.++.
T Consensus       298 g-ikvin~~tn~  308 (558)
T KOG0882|consen  298 G-IKVINLDTNT  308 (558)
T ss_pred             e-EEEEEeecCe
Confidence            5 7888888776

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.89  E-value=2e-06  Score=91.97  Aligned_cols=248  Identities=11%  Similarity=0.043  Sum_probs=144.5

Q ss_pred             CCEEEEeeCCCcEEEEeCCccccccccC---------------ccCEEEEEec--CCEEEEEe-CCCeEEEEecCCCCcc
Q 047728          120 GDLLYTGSDSKNIRVWKNQREFSGFKSN---------------SGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSSKDAS  181 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h---------------~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~  181 (474)
                      ++++++-+.++.|++||....+....+.               -..-..|+++  ++.|+.+. ..+.|+++|+.++...
T Consensus       580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~  659 (1057)
T PLN02919        580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR  659 (1057)
T ss_pred             CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE
Confidence            5577777778889999855332211111               1124667776  45555554 4567888888765432


Q ss_pred             eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728          182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA  260 (474)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  260 (474)
                      .....+....       .....        ..... .....-..++++| ++.++++.+.++.|++||..++... .+.+
T Consensus       660 tlag~G~~g~-------~~~gg--------~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        660 TLAGNGTKGS-------DYQGG--------KKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             EEeccCcccC-------CCCCC--------hhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            1111000000       00000        00000 0012335899999 5556667678899999998776542 2211


Q ss_pred             ---------------cCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee-------eeeeee--------cc
Q 047728          261 ---------------HDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF-------FSQTLL--------KQ  308 (474)
Q Consensus       261 ---------------~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~--------~~  308 (474)
                                     .-.....|+++|++  ++++-..++.|++||+..........       ....+.        ..
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence                           01235678999997  45566667999999987543210000       000000        01


Q ss_pred             cccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--------------cceeeEEEEecCCEEEEEeCCCcE
Q 047728          309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--------------HKLAILCLVTAGNLVFSGSADMSI  374 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~l~sgs~dg~i  374 (474)
                      -.....++++++|+++++-..++.|++||..++......-.+              ....-++++++|+++++-+.++.|
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            123468999999998888889999999998766432111011              112236778889998888899999


Q ss_pred             EEEECCCCce
Q 047728          375 CIWRRKENEH  384 (474)
Q Consensus       375 ~iwd~~~~~~  384 (474)
                      ++||+.+++.
T Consensus       883 rvid~~~~~~  892 (1057)
T PLN02919        883 RYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCcc
Confidence            9999988753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=3.7e-06  Score=81.01  Aligned_cols=173  Identities=13%  Similarity=0.074  Sum_probs=107.3

Q ss_pred             CeeEEEecCCCCE-EEEEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCC--cEEEEEcccC
Q 047728          222 AISSLSMSEDQNL-LYSASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADG--TVKVWRRELQ  293 (474)
Q Consensus       222 ~V~~l~~~~~~~~-l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg--~i~iwd~~~~  293 (474)
                      .+..-.|+|+++. ++..+.   +..|.++|+.+++..... ...+......|+|||  .+++.+.++  .|.++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6678899999985 554443   356999999887654433 345556677899999  444454454  4666666533


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                      ..       ..+...........|+|||+.|+..+. .+  .|.++|+.++....-...+.  ....++|+|++|+....
T Consensus       268 ~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        268 TL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             cE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEc
Confidence            21       122222222345689999987776653 33  57777887664422222222  23489999998877664


Q ss_pred             C---------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc
Q 047728          371 D---------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES  408 (474)
Q Consensus       371 d---------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  408 (474)
                      .         ..|.+.|+.+++..   .+... .......|+||++.
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~---~LT~~-~~~~~p~~SPDG~~  381 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIR---RLTAN-GVNQFPRFSSDGGS  381 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeE---ECCCC-CCcCCeEECCCCCE
Confidence            3         36888888887643   33322 22335889999984

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=2.6e-06  Score=79.77  Aligned_cols=304  Identities=10%  Similarity=0.099  Sum_probs=170.7

Q ss_pred             cCcEEEEEEcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEec--CCEEEEEeC-----------CCeEEEEe
Q 047728          110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVIS--NEKIFSGHQ-----------DGKIRVWK  174 (474)
Q Consensus       110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~-----------dg~i~vwd  174 (474)
                      +.....++|.|.||+|--.-| |.+|--..  .++.|. |. .|.-+.|+  .+||+|=+.           ...++|||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            344567778899999998887 89995332  222222 33 47778887  668888652           25699999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +.++.....+..-.                             .....-.-..|+.|++++|.-.. ..|.||+..+..+
T Consensus       289 I~tG~lkrsF~~~~-----------------------------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l  338 (698)
T KOG2314|consen  289 IATGLLKRSFPVIK-----------------------------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML  338 (698)
T ss_pred             ccccchhcceeccC-----------------------------CCccccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence            99997765443210                             01111224578999999987776 5599999877554


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeC--C---CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSA--D---GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~--d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      +..-...-..|....|+|.+ .|+.=..  +   ..+.+-.+.....      +....-+.-.=..+-|..+|.+|++--
T Consensus       339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~------iRt~nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE------IRTKNLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce------eeeccceeeeccEEEeccCCcEEEEEE
Confidence            44333344668888899986 3332111  1   1122222221111      111111111122355666777776521


Q ss_pred             C-------C---CcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeC---CCcEEEEECCCC--ceEEEEeec
Q 047728          329 S-------D---GLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSA---DMSICIWRRKEN--EHICLSMLT  391 (474)
Q Consensus       329 ~-------d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~---dg~i~iwd~~~~--~~~~~~~~~  391 (474)
                      .       .   ..+.|+.++......... .-+..++.|  .|.|+.+++-+.   ..++.+|.+++.  +...+..+.
T Consensus       413 dR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d  491 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD  491 (698)
T ss_pred             EeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc
Confidence            1       1   124455555443332222 233344444  456777665543   367889988732  222233333


Q ss_pred             CCccceEEEEEeeCCccccccceEEEEEe---cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728          392 GHSGPVKCLAVEKDDESLSREKRWILYSG---SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR  468 (474)
Q Consensus       392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~---s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~  468 (474)
                      .  ...+.+.|+|.|+        +++.+   |..|.+.++|+......      ......| ...+.+    .|.|-||
T Consensus       492 k--~~~N~vfwsPkG~--------fvvva~l~s~~g~l~F~D~~~a~~k------~~~~~eh-~~at~v----eWDPtGR  550 (698)
T KOG2314|consen  492 K--KFANTVFWSPKGR--------FVVVAALVSRRGDLEFYDTDYADLK------DTASPEH-FAATEV----EWDPTGR  550 (698)
T ss_pred             c--cccceEEEcCCCc--------EEEEEEecccccceEEEecchhhhh------hccCccc-cccccc----eECCCCC
Confidence            3  4578899999998        55554   45788999998752111      0111112 234555    4566699


Q ss_pred             eeeccC
Q 047728          469 ICQKRS  474 (474)
Q Consensus       469 ~l~~~s  474 (474)
                      +++++|
T Consensus       551 YvvT~s  556 (698)
T KOG2314|consen  551 YVVTSS  556 (698)
T ss_pred             EEEEee
Confidence            999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=5.6e-06  Score=71.67  Aligned_cols=191  Identities=12%  Similarity=0.084  Sum_probs=116.0

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-------cCcceeEEEecCCC-------eEEEeeCCCcEEE
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-------HDDAVNSIVAGFDG-------LVFTGSADGTVKV  287 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~v~~~~~~-------~l~~~~~dg~i~i  287 (474)
                      .=+-++|+||+.+||.+...|+|+++|+.. ..+..+..       -..+|..+.|.+-.       .|++-..+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            456799999999999999999999999865 33333322       12456666554422       6778888999888


Q ss_pred             EEcccC--CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-----
Q 047728          288 WRRELQ--GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-----  360 (474)
Q Consensus       288 wd~~~~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-----  360 (474)
                      |-+..+  +.................|.++.++|..++|++|+....      +.+     ........++++..     
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-----~s~a~~~GLtaWRiL~~~P  192 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-----MSKASSCGLTAWRILSDSP  192 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-----cccccccCceEEEEcCCCC
Confidence            876432  111111112222334678999999999998888876432      000     01112222333322     


Q ss_pred             cCCEEEEEeCCCc------EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          361 AGNLVFSGSADMS------ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       361 ~~~~l~sgs~dg~------i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..+. ++...|+.      -.+|.+-+...  ..........|..|..+||+.        +||+...+|.|.+|++..-
T Consensus       193 yyk~-v~~~~~~~~~~~~~~~~~~~~~~~~--fs~~~~~~d~i~kmSlSPdg~--------~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  193 YYKQ-VTSSEDDITASSKRRGLLRIPSFKF--FSRQGQEQDGIFKMSLSPDGS--------LLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             cEEE-ccccCccccccccccceeeccceee--eeccccCCCceEEEEECCCCC--------EEEEEEcCCeEEEEecCcc
Confidence            1122 12222222      13343333221  111223457899999999999        9999999999999999875


Q ss_pred             C
Q 047728          435 A  435 (474)
Q Consensus       435 ~  435 (474)
                      .
T Consensus       262 ~  262 (282)
T PF15492_consen  262 R  262 (282)
T ss_pred             h
Confidence            3

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.83  E-value=2.5e-06  Score=76.21  Aligned_cols=222  Identities=14%  Similarity=0.092  Sum_probs=133.1

Q ss_pred             CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728          167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      +|+|..||..+++.........                              -.....+. ..+++..+++++.++.|..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~------------------------------~~~~~~~~-~~~~~~~v~~~~~~~~l~~   50 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP------------------------------GIGGPVAT-AVPDGGRVYVASGDGNLYA   50 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS------------------------------SCSSEEET-EEEETTEEEEEETTSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCC------------------------------CCCCccce-EEEeCCEEEEEcCCCEEEE
Confidence            6889999998887765543321                              01111111 2235667888899999999


Q ss_pred             EEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728          247 WRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      ||..+|+.+..... ...+.......++.+++++.++.|..+|.+++........ ....... ..........+..+++
T Consensus        51 ~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~-~~~~~~~~~~~~~~~~  127 (238)
T PF13360_consen   51 LDAKTGKVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYL-TSSPPAG-VRSSSSPAVDGDRLYV  127 (238)
T ss_dssp             EETTTSEEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCS-TB--SEEEEETTEEEE
T ss_pred             EECCCCCEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeecc-ccccccc-cccccCceEecCEEEE
Confidence            99999999888775 3332222233455777777888999999876654221100 0000111 1122222223788888


Q ss_pred             EcCCCcEEEeecCcccccceeeeeccee----------eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728          327 GSSDGLVNFWERELNLSHGGVLRGHKLA----------ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP  396 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~----------v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~  396 (474)
                      +..++.|..+|++++.............          .......+..++.++.++.+.-+|+.+++..  ....  ...
T Consensus       128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~--w~~~--~~~  203 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKL--WSKP--ISG  203 (238)
T ss_dssp             EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEE--EEEC--SS-
T ss_pred             EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEE--EEec--CCC
Confidence            8889999999999887654433221110          1222233448888888886444499998843  2222  222


Q ss_pred             eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      +..+ ...++.        .|+.++.++.|..||+.+++
T Consensus       204 ~~~~-~~~~~~--------~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  204 IYSL-PSVDGG--------TLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             ECEC-EECCCT--------EEEEEETTTEEEEEETTTTE
T ss_pred             ccCC-ceeeCC--------EEEEEeCCCEEEEEECCCCC
Confidence            3332 334455        67777799999999999884

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.82  E-value=1.1e-07  Score=82.40  Aligned_cols=256  Identities=16%  Similarity=0.256  Sum_probs=152.9

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCC-cce--eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKD-ASI--HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      ....|+++.|.  |.+|++|...|.|.++.-+... +..  ....+.....-+++.                  -..-..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLk------------------SleieE   86 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLK------------------SLEIEE   86 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhh------------------hccHHH
Confidence            45679999998  7899999999999999866543 110  000000000000000                  011334


Q ss_pred             CeeEEEecCCC--CEEEEEECCCcEEEEEcCCcce-------------------e-----------------------ee
Q 047728          222 AISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKC-------------------L-----------------------ES  257 (474)
Q Consensus       222 ~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~-------------------~-----------------------~~  257 (474)
                      .|..+.|..++  ..++..+.|.+|++|.+.....                   +                       +.
T Consensus        87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv  166 (460)
T COG5170          87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV  166 (460)
T ss_pred             HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence            57788887643  4566777899999998753210                   0                       00


Q ss_pred             e-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee--eeeeecccccEEEEEEcC-CCCEEEEEcCCCcE
Q 047728          258 V-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF--SQTLLKQECAVTALAISP-DAAIVYCGSSDGLV  333 (474)
Q Consensus       258 ~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i  333 (474)
                      . ..|.--++++.+..|...+....|-.|.+|+++.........-  ......-...|++..|+| ..+.+.-.+..|.|
T Consensus       167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            1 2456667788888887555666788999999875433211111  111112235688999999 45566677889999


Q ss_pred             EEeecCcccccce-------eeee--------cceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc--
Q 047728          334 NFWERELNLSHGG-------VLRG--------HKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS--  394 (474)
Q Consensus       334 ~v~d~~~~~~~~~-------~~~~--------~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~--  394 (474)
                      ++-|++.......       .+.+        -...+  ..|+++|+++++-+. -+|+|||++..+. ++.++.-|.  
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~l  324 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCDL  324 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC-CceeechHHHH
Confidence            9999984421110       0111        11122  456677888887653 5899999986654 355554442  


Q ss_pred             ----------cce---EEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          395 ----------GPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       395 ----------~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                                ..|   ..+.|+-|..        .+.+|+.....-++-
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~--------~v~sgsy~NNfgiyp  365 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDK--------HVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcc--------cccccccccceeeec
Confidence                      223   3467777777        677777766666665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=1.1e-06  Score=86.31  Aligned_cols=223  Identities=14%  Similarity=0.158  Sum_probs=148.3

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCccc-cccccCccC-EEEEEecC--CEEEEEeCCCe-----EEEEecCCCCcce
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREF-SGFKSNSGL-VKAIVISN--EKIFSGHQDGK-----IRVWKVSSKDASI  182 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~-~~~~~h~~~-V~~i~~~~--~~l~s~~~dg~-----i~vwd~~~~~~~~  182 (474)
                      .|.|++.++..+|.|+.+|.|.+.+..-.+ ..++++... |..+...+  +.|++.+.|+.     |+||+++..+...
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            799999999999999999999998866444 888888777 55555554  47888777654     8999998754221


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC--C--cceeeee
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS--D--YKCLESV  258 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~--~--~~~~~~~  258 (474)
                      ...                   .+...+.-.........++.+++++.+-+.+|+|-.+|.|..+.-.  .  +....-.
T Consensus       107 sP~-------------------c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~  167 (933)
T KOG2114|consen  107 SPQ-------------------CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS  167 (933)
T ss_pred             Ccc-------------------eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee
Confidence            000                   0000000000111256789999999999999999999999988431  1  2222222


Q ss_pred             eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728          259 IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       259 ~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d  337 (474)
                      .....+|+.+++..++ .++-+..-..|.+|.+....     ........+...+.|.++++....+++++. ..+.+||
T Consensus       168 ~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~  241 (933)
T KOG2114|consen  168 HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYD  241 (933)
T ss_pred             ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence            2346799999999888 32333445678899887332     134456778889999999987665665543 4699999


Q ss_pred             cCcccccceeeeecceeeEEEE
Q 047728          338 RELNLSHGGVLRGHKLAILCLV  359 (474)
Q Consensus       338 ~~~~~~~~~~~~~~~~~v~~~~  359 (474)
                      ............+|+....+++
T Consensus       242 sd~~~~cfaf~~g~kk~~~~~~  263 (933)
T KOG2114|consen  242 SDGRGPCFAFEVGEKKEMLVFS  263 (933)
T ss_pred             CCCcceeeeecCCCeEEEEEEe
Confidence            8866554444446665555444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.82  E-value=3.3e-05  Score=71.58  Aligned_cols=254  Identities=11%  Similarity=0.066  Sum_probs=140.8

Q ss_pred             cceeeeeeeeecCcEEEEEEcCCEEEEeeC----------CCcEEEEeCCc--ccccccc---------CccCEEEEEec
Q 047728           99 PNVLIGSLVREEGHIYSLAAAGDLLYTGSD----------SKNIRVWKNQR--EFSGFKS---------NSGLVKAIVIS  157 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~----------dg~v~vwd~~~--~~~~~~~---------h~~~V~~i~~~  157 (474)
                      ..+.++++..-..+--.++++|+.|+++..          +..|.+||...  .+..+..         -......+.-+
T Consensus        36 ~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d  115 (352)
T TIGR02658        36 AGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD  115 (352)
T ss_pred             CCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC
Confidence            345555554322222238899887777655          78899999553  3322321         11123344444


Q ss_pred             CCEEEEEe-C-CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE
Q 047728          158 NEKIFSGH-Q-DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL  235 (474)
Q Consensus       158 ~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  235 (474)
                      +++|+... . +..|.+.|+.+++......+...   ..                    .+  -..+-..+..+.|+..+
T Consensus       116 gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~--------------------vy--~t~e~~~~~~~~Dg~~~  170 (352)
T TIGR02658       116 NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YH--------------------IF--PTANDTFFMHCRDGSLA  170 (352)
T ss_pred             CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cE--------------------EE--EecCCccEEEeecCceE
Confidence            77787666 3 68899999999876544332110   00                    00  01111112222333333


Q ss_pred             EEE-ECCCcEEEEEcCCcceeeeeeecCcceeEE-EecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeee-ee-----
Q 047728          236 YSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ-TL-----  305 (474)
Q Consensus       236 ~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v-~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~-----  305 (474)
                      ... ..+|....   .+   ...+.....++..- .+.+ ++ .+++... |.|.+.|+............. ..     
T Consensus       171 ~v~~d~~g~~~~---~~---~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~  243 (352)
T TIGR02658       171 KVGYGTKGNPKI---KP---TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD  243 (352)
T ss_pred             EEEecCCCceEE---ee---eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence            221 12232110   00   00011100000000 2344 66 4444444 999999975433221111110 01     


Q ss_pred             ecccccEEEEEEcCCCCEEEEEc----------CCCcEEEeecCcccccceeeeecceeeEEEEecCC-EEEEEe-CCCc
Q 047728          306 LKQECAVTALAISPDAAIVYCGS----------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVFSGS-ADMS  373 (474)
Q Consensus       306 ~~~~~~v~~l~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sgs-~dg~  373 (474)
                      .-....+.-++++++++.+++..          ..+.|.++|..+.+....+..++...-+.++++++ +|++.. .++.
T Consensus       244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc
Confidence            11234455599999999888843          22579999999999888888888888899999999 887666 5788


Q ss_pred             EEEEECCCCce
Q 047728          374 ICIWRRKENEH  384 (474)
Q Consensus       374 i~iwd~~~~~~  384 (474)
                      |.++|..+++.
T Consensus       324 VsViD~~t~k~  334 (352)
T TIGR02658       324 LYIFDAETGKE  334 (352)
T ss_pred             EEEEECcCCeE
Confidence            99999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.6e-06  Score=81.14  Aligned_cols=309  Identities=13%  Similarity=0.069  Sum_probs=180.1

Q ss_pred             CCCCCCcCccCCCCCCCCCCCCCcceeeeeeeeecCcEEEEEEcCCEEEEeeC-----------CCcEEEEeCC--cccc
Q 047728           76 SKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSD-----------SKNIRVWKNQ--REFS  142 (474)
Q Consensus        76 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~-----------dg~v~vwd~~--~~~~  142 (474)
                      .+||-++...+.-.+.+..+.=+....++.+.+..-.-..++|+.+||+|=+.           ...++|||..  ....
T Consensus       217 ~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr  296 (698)
T KOG2314|consen  217 RWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR  296 (698)
T ss_pred             EecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc
Confidence            35565555554433333333222223333333222234567777889998653           2468999944  3444


Q ss_pred             ccccC--ccCE-EEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          143 GFKSN--SGLV-KAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       143 ~~~~h--~~~V-~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      .|..-  ...+ .-..|+  +.+++--..| .|.||+..+-.+.....+                               
T Consensus       297 sF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ksl-------------------------------  344 (698)
T KOG2314|consen  297 SFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSL-------------------------------  344 (698)
T ss_pred             ceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccccc-------------------------------
Confidence            44331  1111 223444  5566655554 699998776433221111                               


Q ss_pred             eccCCeeEEEecCCCCEEEEEEC-----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEE----------eeC
Q 047728          218 KHFDAISSLSMSEDQNLLYSASW-----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT----------GSA  281 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~----------~~~  281 (474)
                       .-..|....|+|.+++||-=..     -..+.+-.+.+++.+++...+.-.=..+.|-.+| +|..          .+.
T Consensus       345 -ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~  423 (698)
T KOG2314|consen  345 -KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ  423 (698)
T ss_pred             -CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence             3346788899998887775332     2456677777777777666555444456666666 3332          112


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCccc---ccceeeeecceee
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNL---SHGGVLRGHKLAI  355 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~---~~~~~~~~~~~~v  355 (474)
                      -..+.|+.++....      ..........|...+|.|.|+.+++-+.   ..++.+|.+++..   .+...+......-
T Consensus       424 f~n~eIfrireKdI------pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~  497 (698)
T KOG2314|consen  424 FSNLEIFRIREKDI------PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANT  497 (698)
T ss_pred             EeeEEEEEeeccCC------CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccce
Confidence            22355666654332      2223344567899999999987776543   3568889877421   1122233344556


Q ss_pred             EEEEecCCEEEEEe---CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC------CCcE
Q 047728          356 LCLVTAGNLVFSGS---ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL------DKSV  426 (474)
Q Consensus       356 ~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------Dg~i  426 (474)
                      +.++|.|++++.+.   ..|.+.++|....... ......| ...+.+.|.|.|+        |+++++.      |.--
T Consensus       498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~~eh-~~at~veWDPtGR--------YvvT~ss~wrhk~d~GY  567 (698)
T KOG2314|consen  498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK-DTASPEH-FAATEVEWDPTGR--------YVVTSSSSWRHKVDNGY  567 (698)
T ss_pred             EEEcCCCcEEEEEEecccccceEEEecchhhhh-hccCccc-cccccceECCCCC--------EEEEeeehhhhccccce
Confidence            78899999988765   5789999999853321 1122233 3568899999999        8998875      4456


Q ss_pred             EEEEccC
Q 047728          427 KMWRVSE  433 (474)
Q Consensus       427 ~vw~~~~  433 (474)
                      +||++..
T Consensus       568 ri~tfqG  574 (698)
T KOG2314|consen  568 RIFTFQG  574 (698)
T ss_pred             EEEEeec
Confidence            7887754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.74  E-value=2.2e-05  Score=82.58  Aligned_cols=234  Identities=17%  Similarity=0.183  Sum_probs=146.9

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEE----ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVW----KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF  220 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  220 (474)
                      ..+.|.++.+-  .+.++.+..+|.|.+.    +.+......   ++                              .-.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~---VG------------------------------~vd  120 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI---VG------------------------------SVD  120 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE---EE------------------------------EEc
Confidence            45678888876  5678889999999998    433332211   11                              145


Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee------------------------eeee----------------
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE------------------------SVIA----------------  260 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------------~~~~----------------  260 (474)
                      ..|.+++|+||+.+|+.++.+++|.+-+- +.+.+.                        .|.+                
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            68999999999999999999998887632 111111                        1100                


Q ss_pred             --------cCcceeEEEecCCC-eEEEeeC---C---CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          261 --------HDDAVNSIVAGFDG-LVFTGSA---D---GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       261 --------~~~~v~~v~~~~~~-~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                              ..+.-..|.|-.|| ++++.+-   .   ..+|||+.+.  .     +......-.+--.+++|.|.|++||
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG--~-----L~stSE~v~gLe~~l~WrPsG~lIA  272 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG--E-----LQSTSEPVDGLEGALSWRPSGNLIA  272 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc--e-----EEeccccCCCccCCccCCCCCCEEE
Confidence                    22344568899999 6666553   2   5799998761  1     1222223333345789999999999


Q ss_pred             EEcC---CCcEEEeecCcccccceeee---ecce--eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-ccc
Q 047728          326 CGSS---DGLVNFWERELNLSHGGVLR---GHKL--AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-SGP  396 (474)
Q Consensus       326 ~~~~---dg~i~v~d~~~~~~~~~~~~---~~~~--~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-~~~  396 (474)
                      +.-.   ...|.+|..+ +.....+..   ....  .-+.|+.++..|+..-.|. |.+|-..+..+.....+.-. ...
T Consensus       273 ~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~  350 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES  350 (928)
T ss_pred             EEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC
Confidence            8765   3456677644 333322221   1223  3466666899999987665 99999988876655555532 334


Q ss_pred             eEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +..+.|+|....       .|.....+|.+..++
T Consensus       351 ~~~~~Wdpe~p~-------~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  351 VNFVKWDPEKPL-------RLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCceEECCCCCC-------EEEEEecCCcEEEEE
Confidence            556999997653       355555545554443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.74  E-value=2.7e-07  Score=82.92  Aligned_cols=158  Identities=18%  Similarity=0.245  Sum_probs=101.0

Q ss_pred             eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc---EEEeecCc
Q 047728          265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL---VNFWEREL  340 (474)
Q Consensus       265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~---i~v~d~~~  340 (474)
                      +..+..++.+ +++++..+....+++++...+..+.......   ...-+++.|..+...+.++..-|.   +.+|....
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            3444556666 6667777777777777654432222112222   222344445554555554444444   44444443


Q ss_pred             ccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728          341 NLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY  418 (474)
Q Consensus       341 ~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~  418 (474)
                      +  ......+|-..+  +.+++|+++++++..|..|++-.......+ -...-||..-|..++.-++.         .|+
T Consensus       142 ~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-esfclGH~eFVS~isl~~~~---------~Ll  209 (390)
T KOG3914|consen  142 G--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-ESFCLGHKEFVSTISLTDNY---------LLL  209 (390)
T ss_pred             c--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-hhhccccHhheeeeeeccCc---------eee
Confidence            2  223455776655  567789999999999999999877544321 23345799999999998875         589


Q ss_pred             EecCCCcEEEEEccCCCCC
Q 047728          419 SGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       419 s~s~Dg~i~vw~~~~~~~~  437 (474)
                      ++|.|++|++||+.+++..
T Consensus       210 S~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  210 SGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             ecCCCCcEEEEecccCCcc
Confidence            9999999999999998544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=9.1e-07  Score=86.35  Aligned_cols=183  Identities=13%  Similarity=0.120  Sum_probs=128.4

Q ss_pred             ccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728          148 SGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS  227 (474)
Q Consensus       148 ~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  227 (474)
                      ...+.|+++++..|+-|..+|.|++.+.+.... ..                                 ..|...     
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~-~~---------------------------------~~~s~~-----   79 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK-TN---------------------------------FDHSSS-----   79 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCccc-cc---------------------------------cccccc-----
Confidence            446777778888888888888888887765421 00                                 013222     


Q ss_pred             ecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC------CeEEEeeCCCcEEEEEcccCCCceeeee
Q 047728          228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD------GLVFTGSADGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       228 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~  301 (474)
                       ..+|.++++|+.||+|.|-.+-+.+...++. ...++.+++++|+      ..+++|+.-| +.++..+-.+...    
T Consensus        80 -~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~----  152 (846)
T KOG2066|consen   80 -ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD----  152 (846)
T ss_pred             -ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc----
Confidence             4579999999999999999998887776664 4678999999998      2799999999 8888655433311    


Q ss_pred             eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee-----EEEEe-cCCEEEEEeCCCcEE
Q 047728          302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI-----LCLVT-AGNLVFSGSADMSIC  375 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v-----~~~~~-~~~~l~sgs~dg~i~  375 (474)
                      ........++|.++.|.  |+++|-++.+| |++||+.....+..+...+...-     ..+.+ +...|+.|-. .+|+
T Consensus       153 ~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~-d~v~  228 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG-DSVK  228 (846)
T ss_pred             ceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC-CeEE
Confidence            12456678899999996  77888777666 99999988877665555543222     22333 2445555544 4688


Q ss_pred             EEECC
Q 047728          376 IWRRK  380 (474)
Q Consensus       376 iwd~~  380 (474)
                      |..++
T Consensus       229 i~~I~  233 (846)
T KOG2066|consen  229 ICSIK  233 (846)
T ss_pred             EEEEe
Confidence            88876

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=7.4e-08  Score=84.65  Aligned_cols=145  Identities=13%  Similarity=0.177  Sum_probs=106.7

Q ss_pred             eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc---cceeeeec
Q 047728          275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS---HGGVLRGH  351 (474)
Q Consensus       275 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~  351 (474)
                      .-++.+.+..|-+-|++++-.       +. ....+.|.++.|...++++..|+..|.|..+|++....   ......-|
T Consensus       226 yhfs~G~sqqv~L~nvetg~~-------qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh  297 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVETGHQ-------QS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH  297 (425)
T ss_pred             eeecccccceeEEEEeecccc-------cc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc
Confidence            346677788888888876532       22 23667789999999999999999999999999986521   11223356


Q ss_pred             ceeeEEEE---ecCCEEEEEeCCCcEEEEECCCCce-EEEEeecCCccceEEEEEe--eCCccccccceEEEEEecCCCc
Q 047728          352 KLAILCLV---TAGNLVFSGSADMSICIWRRKENEH-ICLSMLTGHSGPVKCLAVE--KDDESLSREKRWILYSGSLDKS  425 (474)
Q Consensus       352 ~~~v~~~~---~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~--~~~~~~~~~~~~~l~s~s~Dg~  425 (474)
                      ...++++.   +++++|++.+.+|+|.+||.+.-+. .-+....+|...-.-+-++  +...        .++++++|..
T Consensus       298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--------~I~s~GdDcy  369 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--------SIFSVGDDCY  369 (425)
T ss_pred             CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--------eEEEccCeeE
Confidence            66676654   4789999999999999999986551 1267788887654444443  3333        7888999999


Q ss_pred             EEEEEccCCC
Q 047728          426 VKMWRVSEQA  435 (474)
Q Consensus       426 i~vw~~~~~~  435 (474)
                      .|||.+..+.
T Consensus       370 tRiWsl~~gh  379 (425)
T KOG2695|consen  370 TRIWSLDSGH  379 (425)
T ss_pred             EEEEecccCc
Confidence            9999999873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1.3e-07  Score=83.15  Aligned_cols=165  Identities=15%  Similarity=0.184  Sum_probs=117.8

Q ss_pred             EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728          236 YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA  314 (474)
Q Consensus       236 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  314 (474)
                      ++.+.+..|-+-|++++... .+. ....|.++.|...+ +++.|...|.|..+|++...++...  .....-|.+.|++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~--~a~rlyh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW--CAQRLYHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc--ceEEEEcCcchhh
Confidence            55566777899999887542 333 56778888888744 9999999999999999976443332  2344568889999


Q ss_pred             EEEcC-CCCEEEEEcCCCcEEEeecCccccc--ceeeeecceee----EEEEecCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728          315 LAISP-DAAIVYCGSSDGLVNFWERELNLSH--GGVLRGHKLAI----LCLVTAGNLVFSGSADMSICIWRRKENEHICL  387 (474)
Q Consensus       315 l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~v----~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~  387 (474)
                      +..-. ++++|++.+.+|.|++||++.-+..  .....+|....    .-+.+....+++++.|...+||.++.++..+.
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            98877 8899999999999999999876552  23344554332    34556678899999999999999999985433


Q ss_pred             EeecCC--ccceEEEEEee
Q 047728          388 SMLTGH--SGPVKCLAVEK  404 (474)
Q Consensus       388 ~~~~~h--~~~v~~l~~~~  404 (474)
                      ..+...  ...+..++|..
T Consensus       384 ipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  384 IPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             cCCCCccccccccceehhc
Confidence            333221  22345555544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.69  E-value=1.4e-05  Score=71.42  Aligned_cols=188  Identities=13%  Similarity=0.082  Sum_probs=116.6

Q ss_pred             cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728          157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY  236 (474)
Q Consensus       157 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  236 (474)
                      .++.+++++.++.|..||..+++..........                             ....   .  ...+..++
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-----------------------------~~~~---~--~~~~~~v~   80 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-----------------------------ISGA---P--VVDGGRVY   80 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-----------------------------GGSG---E--EEETTEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-----------------------------ccce---e--eecccccc
Confidence            688899999999999999999987655543211                             0001   1  22455677


Q ss_pred             EEECCCcEEEEEcCCcceeeee-eecCc-----ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728          237 SASWDKTFKVWRTSDYKCLESV-IAHDD-----AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC  310 (474)
Q Consensus       237 s~s~dg~i~iwd~~~~~~~~~~-~~~~~-----~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (474)
                      .++.++.|..+|..+|+.+... .....     ......+. ++.++++..++.|..+|++++........  .......
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~  157 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPV--GEPRGSS  157 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEES--STT-SS-
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeec--CCCCCCc
Confidence            7778899999999999998884 33211     11222332 34788888899999999886543211111  0000001


Q ss_pred             ------cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728          311 ------AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       311 ------~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                            .+..-.+..++ .++++..++.+..+|+.++....  .............++..|+.++.++.|..||+.+++.
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence                  11222222244 77777778864444999887442  1121222222567888999888999999999999974

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.69  E-value=1.1e-05  Score=74.98  Aligned_cols=241  Identities=15%  Similarity=0.162  Sum_probs=153.4

Q ss_pred             cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      +....-++..+.++  |.+|++....| |.+|.-.........                                  -..
T Consensus        28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~----------------------------------~~~   72 (561)
T COG5354          28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF----------------------------------RHP   72 (561)
T ss_pred             ccccCcchhheeecCcchheehhhccc-eEEccccchhheeee----------------------------------ecC
Confidence            33356678888888  67888877776 899987765532211                                  223


Q ss_pred             CeeEEEecCCCCEEEEEECC---------------CcEEEEEcCCcceeeeeeecCcc--ee-EEEecCCCeEEEeeCCC
Q 047728          222 AISSLSMSEDQNLLYSASWD---------------KTFKVWRTSDYKCLESVIAHDDA--VN-SIVAGFDGLVFTGSADG  283 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~--v~-~v~~~~~~~l~~~~~dg  283 (474)
                      .|..+.|+|.+++|.+=+..               ..+.+||+.++..+..+.....+  .+ -+.|+-+..+++--...
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~  152 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS  152 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence            57888999999999875533               35999999999999988776555  44 56777776333323456


Q ss_pred             cEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCC--CEEEE-----EcCCCcEEEeecCccccccee-eeeccee
Q 047728          284 TVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDA--AIVYC-----GSSDGLVNFWERELNLSHGGV-LRGHKLA  354 (474)
Q Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~--~~l~~-----~~~dg~i~v~d~~~~~~~~~~-~~~~~~~  354 (474)
                      .++|+++. ....     ...... ....|....|+|.+  ..|+.     ....+.+++|.+..+..+... +..-...
T Consensus       153 sl~i~e~t-~n~~-----~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~  226 (561)
T COG5354         153 SLYIHEIT-DNIE-----EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV  226 (561)
T ss_pred             eEEEEecC-Cccc-----cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence            78999862 2111     111111 13568888999953  34443     456778999988744333211 1112222


Q ss_pred             eEEEEecCCEEEEEe-----------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728          355 ILCLVTAGNLVFSGS-----------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD  423 (474)
Q Consensus       355 v~~~~~~~~~l~sgs-----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D  423 (474)
                      -+.+...|++|+.--           .+..++|+++....   +.....-.++|..++|.|.+...      .+++|-.+
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F------~vi~g~~p  297 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRF------AVISGYMP  297 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCce------eEEecccc
Confidence            244445566554321           23567888887443   22333567899999999998732      56666788


Q ss_pred             CcEEEEEccCC
Q 047728          424 KSVKMWRVSEQ  434 (474)
Q Consensus       424 g~i~vw~~~~~  434 (474)
                      ..+.+++++..
T Consensus       298 a~~s~~~lr~N  308 (561)
T COG5354         298 ASVSVFDLRGN  308 (561)
T ss_pred             cceeecccccc
Confidence            89999998765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.69  E-value=7.7e-05  Score=66.91  Aligned_cols=199  Identities=12%  Similarity=0.085  Sum_probs=122.9

Q ss_pred             CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      +.++++--..+.|..|+............. ...+++.  ++.|+.+..++ +.++|..+++..........        
T Consensus        12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~--------   81 (246)
T PF08450_consen   12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG--------   81 (246)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT--------
T ss_pred             CEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC--------
Confidence            667777777888999986644333322222 5555554  67788887766 56668887754332221100        


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC--------CcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD--------KTFKVWRTSDYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~v~  269 (474)
                                         .......+++++.++|++.++....        |.|..++.. ++..... ..-...+.|+
T Consensus        82 -------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~  140 (246)
T PF08450_consen   82 -------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIA  140 (246)
T ss_dssp             -------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEE
T ss_pred             -------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceE
Confidence                               0023457899999999977766543        557777776 4543333 3355678999


Q ss_pred             ecCCC-e-EEEeeCCCcEEEEEcccCCCcee-eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce
Q 047728          270 AGFDG-L-VFTGSADGTVKVWRRELQGKGTK-HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG  346 (474)
Q Consensus       270 ~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  346 (474)
                      |+|++ . +++-+..+.|..+++........ ..............-.++++.+|++.++....+.|.++|.+ +.....
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~  219 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLRE  219 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEE
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEE
Confidence            99999 4 45667788899998875443111 11112222223458889999999998888889999999988 544433


Q ss_pred             eeee
Q 047728          347 VLRG  350 (474)
Q Consensus       347 ~~~~  350 (474)
                      +..+
T Consensus       220 i~~p  223 (246)
T PF08450_consen  220 IELP  223 (246)
T ss_dssp             EE-S
T ss_pred             EcCC
Confidence            4333

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=4.9e-06  Score=80.98  Aligned_cols=236  Identities=14%  Similarity=0.065  Sum_probs=158.2

Q ss_pred             EEEEEecC-CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728          151 VKAIVISN-EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS  229 (474)
Q Consensus       151 V~~i~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  229 (474)
                      -.++.|+. ..|+-|+. ..|.+-|..+-+.+...                                ..|...|+.+.|.
T Consensus        18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsi--------------------------------e~h~s~V~~VrWa   64 (1062)
T KOG1912|consen   18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSI--------------------------------ELHQSAVTSVRWA   64 (1062)
T ss_pred             ccccccCccceEEEecC-ceEEEEehhhhhhhhcc--------------------------------ccCccceeEEEec
Confidence            55677774 45555554 46888887766544322                                2377888888887


Q ss_pred             CC------------CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-----eEEEeeCCCcEEEEEccc
Q 047728          230 ED------------QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-----LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       230 ~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-----~l~~~~~dg~i~iwd~~~  292 (474)
                      |.            .-+|+++.-.|.|.+||...+..+..+..|.+++..++|-+..     .|++-.....|.+|+..+
T Consensus        65 p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt  144 (1062)
T KOG1912|consen   65 PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT  144 (1062)
T ss_pred             cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence            62            1256777788999999999999999999999999999987643     677778888999999887


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccc------ccceeeeecce------------
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNL------SHGGVLRGHKL------------  353 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~------------  353 (474)
                      +++.      -..........|+.++| +.+.+..-+..|.+.+-+.-...      ...++...|..            
T Consensus       145 G~k~------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~n  218 (1062)
T KOG1912|consen  145 GEKF------WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGN  218 (1062)
T ss_pred             Ccee------eccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccc
Confidence            7652      22223344567789999 77777777778877776532111      11111111111            


Q ss_pred             ---------------eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728          354 ---------------AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY  418 (474)
Q Consensus       354 ---------------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~  418 (474)
                                     .-.+++|.-+-++-..--..+.++|++-..  ++....-..+.+.-+.+-|+.+..      .|+
T Consensus       219 s~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~--~l~vvpier~~akfv~vlP~~~rd------~Lf  290 (1062)
T KOG1912|consen  219 STTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC--CLAVVPIERGGAKFVDVLPDPRRD------ALF  290 (1062)
T ss_pred             cccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc--eeEEEEeccCCcceeEeccCCCcc------eEE
Confidence                           002334443333334446779999998776  455555555667778888887633      899


Q ss_pred             EecCCCcEEEEEccC
Q 047728          419 SGSLDKSVKMWRVSE  433 (474)
Q Consensus       419 s~s~Dg~i~vw~~~~  433 (474)
                      +.-.||.+.+|.-+.
T Consensus       291 clH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  291 CLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEecCCeEEEEEeec
Confidence            999999999997665

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1e-06  Score=80.27  Aligned_cols=247  Identities=13%  Similarity=0.122  Sum_probs=167.5

Q ss_pred             cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          146 SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       146 ~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      .|.+.|+.+... .+++++++.||.++.|.-..-.....                             ...+..|...|.
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEf-----------------------------VKhFraHL~~I~   57 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEF-----------------------------VKHFRAHLGVIL   57 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceee-----------------------------hhhhHHHHHHHH
Confidence            478888888777 78999999999999997543211100                             012344888899


Q ss_pred             EEEecCCCCEEEEEEC-CCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC---eEEE-eeCCCcEEEEEcccCCCce
Q 047728          225 SLSMSEDQNLLYSASW-DKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG---LVFT-GSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~---~l~~-~~~dg~i~iwd~~~~~~~~  297 (474)
                      +++.+.++-++.+.+. |..++++|+++...+..++.  ..+.+..+. ++..   .+++ .-.++.+.++|-...... 
T Consensus        58 sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-  135 (558)
T KOG0882|consen   58 SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-  135 (558)
T ss_pred             hhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCc-
Confidence            9999999999999887 99999999988766544433  223332222 2221   3333 345788999997644321 


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce---------------eee-ecceeeEEEEec
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG---------------VLR-GHKLAILCLVTA  361 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---------------~~~-~~~~~v~~~~~~  361 (474)
                         ......-|..+|.++.+.+.+..+++....|.|..|..+...+...               +.+ .......+++++
T Consensus       136 ---~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~  212 (558)
T KOG0882|consen  136 ---DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD  212 (558)
T ss_pred             ---cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence               2344556889999999999999999999999999998773111000               001 112334788999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceEEE------------------------------EeecCCcc-ceEEEEEeeCCcccc
Q 047728          362 GNLVFSGSADMSICIWRRKENEHICL------------------------------SMLTGHSG-PVKCLAVEKDDESLS  410 (474)
Q Consensus       362 ~~~l~sgs~dg~i~iwd~~~~~~~~~------------------------------~~~~~h~~-~v~~l~~~~~~~~~~  410 (474)
                      +..+.+-+.|..|++++..+++....                              ..+..|.. .-+.+.|...++   
T Consensus       213 g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~---  289 (558)
T KOG0882|consen  213 GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN---  289 (558)
T ss_pred             cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC---
Confidence            99999999999999999988763210                              00111222 335667777777   


Q ss_pred             ccceEEEEEecCCCcEEEEEccCCC
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                           +|+-|+-=| |+|.++.++.
T Consensus       290 -----flly~t~~g-ikvin~~tn~  308 (558)
T KOG0882|consen  290 -----FLLYGTILG-IKVINLDTNT  308 (558)
T ss_pred             -----EEEeeccee-EEEEEeecCe
Confidence                 777776655 8888887763

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.63  E-value=3.8e-05  Score=68.93  Aligned_cols=192  Identities=11%  Similarity=0.049  Sum_probs=120.0

Q ss_pred             EEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEec-CCCeEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          225 SLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG-FDGLVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       225 ~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      +.+|.+ ++.++++--..+.|..|+..+++... +....  ...+++. +++.++.+...+. .++|+..+..   ....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~---~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKV---TVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEE---EEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcE---EEEe
Confidence            678888 56666666678999999998765433 32222  6677777 6777777766554 5557764321   1111


Q ss_pred             eee-ec-ccccEEEEEEcCCCCEEEEEcCC--------CcEEEeecCcccccceeeeecceeeEEEEecCCEEE-EEeCC
Q 047728          303 QTL-LK-QECAVTALAISPDAAIVYCGSSD--------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVF-SGSAD  371 (474)
Q Consensus       303 ~~~-~~-~~~~v~~l~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-sgs~d  371 (474)
                      ... .. .....+.++++++|++.++....        |.|..++.. +........-+...-++++++++.|+ +-+..
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence            111 12 45678899999999977765543        457777776 33222222233445689999998776 55677


Q ss_pred             CcEEEEECCCCce--E---EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          372 MSICIWRRKENEH--I---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       372 g~i~iwd~~~~~~--~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +.|..|++.....  .   ....+....+..-.+++..++.        +.++.-..+.|.+++..
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~--------l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN--------LWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---------EEEEEETTTEEEEEETT
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC--------EEEEEcCCCEEEEECCC
Confidence            8899999863321  1   1222333333578899999998        77776678889999876

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.60  E-value=1.2e-06  Score=86.71  Aligned_cols=181  Identities=16%  Similarity=0.190  Sum_probs=134.2

Q ss_pred             CCEEEEeeCCCcEEEEeCCcc--ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          120 GDLLYTGSDSKNIRVWKNQRE--FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      +..++.|+-...+..+|....  .+...-....|+-+..+++.+++|...|+|.+-|..+.+.+                
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~i----------------  210 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETI----------------  210 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCcee----------------
Confidence            556666766666777775533  23333334458888999999999999999999998887654                


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC---------CCcEEEEEcCCcceeeeeeecCcceeEE
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW---------DKTFKVWRTSDYKCLESVIAHDDAVNSI  268 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~v  268 (474)
                                      ..+..|++.|.++..  .|++|++++.         |.-|+|||++..+.+.-+.-+.++ .-+
T Consensus       211 ----------------ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~fl  271 (1118)
T KOG1275|consen  211 ----------------HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFL  271 (1118)
T ss_pred             ----------------eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhh
Confidence                            244559999998866  5789999874         556899999998887777666555 556


Q ss_pred             EecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728          269 VAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       269 ~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d  337 (474)
                      .|+|.-  .+++++..|...+-|.........  -..........+..++++++++.++.|..+|.|.+|-
T Consensus       272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA--GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhcccccceEEEEecccceeeccccccCCCcc--ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            788875  899999999999998433222111  1223334455699999999999999999999999997

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=2.4e-07  Score=56.34  Aligned_cols=37  Identities=32%  Similarity=0.720  Sum_probs=35.1

Q ss_pred             EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      ++..+.+|.++|++|+|+|++.        +|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~--------~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGN--------FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSS--------EEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccc--------cceeeCCCCEEEEEC
Confidence            5788999999999999999988        999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=2.2e-06  Score=83.79  Aligned_cols=188  Identities=15%  Similarity=0.102  Sum_probs=127.4

Q ss_pred             cCcEEEEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      ...+.|.++.+++|+-|+-+|.|++.+.+........|+..    ...|.++++|+.||+|.|-.+.+.+......    
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d----  110 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD----  110 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe----
Confidence            46688999999999999999999999966554555556554    4448999999999999999888776543222    


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-----CCEEEEEECCCcEEEEEcCC--cceeeeeeecC
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-----QNLLYSASWDKTFKVWRTSD--YKCLESVIAHD  262 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~  262 (474)
                                                   -..++.+++++|+     .+.+++|+..| +.++.-+-  .+....+....
T Consensus       111 -----------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen  111 -----------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             -----------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence                                         4457899999997     57899999888 77765321  11111455567


Q ss_pred             cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          263 DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       263 ~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      ++|.++.|..+ +++-+ .|--|++||+..................+.....+.|.++.+++ .| ...+|++..++
T Consensus       161 G~I~~i~W~g~-lIAWa-nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  161 GPIHSIKWRGN-LIAWA-NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDSVKICSIK  233 (846)
T ss_pred             cceEEEEecCc-EEEEe-cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCeEEEEEEe
Confidence            89999999732 44444 55558999987655422222222222222334567777665544 34 44468888777

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.53  E-value=3e-05  Score=75.12  Aligned_cols=135  Identities=14%  Similarity=0.188  Sum_probs=91.1

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCC-ccccccc--cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFK--SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRV  186 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  186 (474)
                      .-+|++..+++++.|+.-|.|++|+.. ......+  +..+.+..+..+  ..+++.|+..|.|.++.+..........+
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            357888889999999999999999843 2222222  233334444444  56788888999999998887543322221


Q ss_pred             cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecC
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHD  262 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~  262 (474)
                      ...                          -..|...|++++|++++..+++|...|+|..-.+.+.    ...+.+....
T Consensus       117 t~~--------------------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d  170 (726)
T KOG3621|consen  117 TPC--------------------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED  170 (726)
T ss_pred             ccc--------------------------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence            110                          0128899999999999999999999999999888762    1122233345


Q ss_pred             cceeEEEecC
Q 047728          263 DAVNSIVAGF  272 (474)
Q Consensus       263 ~~v~~v~~~~  272 (474)
                      ..|..+....
T Consensus       171 s~IVQlD~~q  180 (726)
T KOG3621|consen  171 SEIVQLDYLQ  180 (726)
T ss_pred             cceEEeeccc
Confidence            6676776653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4.2e-06  Score=75.36  Aligned_cols=79  Identities=22%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             eeeeccCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728          215 LWIKHFDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~  291 (474)
                      .+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|..|.  .+.+|...|.|.+||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            4556888999999999665 7889999999999999999999999887 889999999887  89999999999999998


Q ss_pred             cCC
Q 047728          292 LQG  294 (474)
Q Consensus       292 ~~~  294 (474)
                      ...
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.52  E-value=1.9e-05  Score=68.52  Aligned_cols=190  Identities=16%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCC-ccccccc-------cCccCEEEEEec--------CCEEEEEeCCCeEEEEecCC
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFK-------SNSGLVKAIVIS--------NEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~-------~h~~~V~~i~~~--------~~~l~s~~~dg~i~vwd~~~  177 (474)
                      .++++++.+||.+...|+|+++|+. ..+..+.       .-..+|..+.|-        ...|+.-..+|.++-|-+..
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~  128 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV  128 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence            3456789999999999999999944 3222221       124566677664        12577777888888777643


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES  257 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  257 (474)
                      +...........                        .....+...|.++.++|..++|++|+....      +++.    
T Consensus       129 gt~q~y~e~hsf------------------------sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----  174 (282)
T PF15492_consen  129 GTNQGYQENHSF------------------------SFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----  174 (282)
T ss_pred             ccCCcceeeEEE------------------------EecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----
Confidence            321111110000                        011125678999999999888888774322      0000    


Q ss_pred             eeecCcceeEEEecCCC---eEEEeeCCCcE------EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          258 VIAHDDAVNSIVAGFDG---LVFTGSADGTV------KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~---~l~~~~~dg~i------~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      -++....+++-.+..+.   ..++...|+..      .+|.+-..      .+..........|..|..+|||..|++..
T Consensus       175 s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~------~~fs~~~~~~d~i~kmSlSPdg~~La~ih  248 (282)
T PF15492_consen  175 SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF------KFFSRQGQEQDGIFKMSLSPDGSLLACIH  248 (282)
T ss_pred             ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce------eeeeccccCCCceEEEEECCCCCEEEEEE
Confidence            00111112222221111   22222222211      12221100      01112233467799999999999999999


Q ss_pred             CCCcEEEeecCcccc
Q 047728          329 SDGLVNFWERELNLS  343 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~  343 (474)
                      .+|.|.+|++..-..
T Consensus       249 ~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  249 FSGSLSLWEIPSLRL  263 (282)
T ss_pred             cCCeEEEEecCcchh
Confidence            999999999875543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.52  E-value=0.00028  Score=69.87  Aligned_cols=278  Identities=9%  Similarity=0.090  Sum_probs=148.6

Q ss_pred             cCCEEEEeeCCCcEEEEeCC--ccccccccCcc------CE--EEEEecC-CEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          119 AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSG------LV--KAIVISN-EKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       119 ~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~------~V--~~i~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      .+..++.++.++.|.-.|..  +.+-.+.....      .+  ..+...+ +.++.++.+|.|.-+|.++++........
T Consensus        60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            36677778888888888843  33322221111      11  1223445 89999999999999999999877654432


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCee-EEEecCCCCEEEEEE---------CCCcEEEEEcCCcceeee
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS-SLSMSEDQNLLYSAS---------WDKTFKVWRTSDYKCLES  257 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~  257 (474)
                      ....                           ....+. ...+  .+..++.++         .++.|..+|..+++.+..
T Consensus       140 ~~~~---------------------------~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         140 DQVP---------------------------PGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CCcC---------------------------cceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            1100                           000000 0111  123444443         467899999999998877


Q ss_pred             eeecCcc--------------------e-eEEEecCC-CeEEEeeCCC------------------cEEEEEcccCCCce
Q 047728          258 VIAHDDA--------------------V-NSIVAGFD-GLVFTGSADG------------------TVKVWRRELQGKGT  297 (474)
Q Consensus       258 ~~~~~~~--------------------v-~~v~~~~~-~~l~~~~~dg------------------~i~iwd~~~~~~~~  297 (474)
                      +......                    + ...++.+. +.++.++.++                  .|.-+|..+++...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            6542110                    1 12233333 4777777665                  68888877665432


Q ss_pred             eeeeeee----eeccccc-EEEEEEcCCCC---EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEE-
Q 047728          298 KHFFSQT----LLKQECA-VTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG-  368 (474)
Q Consensus       298 ~~~~~~~----~~~~~~~-v~~l~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-  368 (474)
                      .......    ......+ +..+. .-++.   .+++++.+|.+..+|.++++.+-......  .-....+  +.++.+ 
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~  345 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGA  345 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEcc
Confidence            2111000    0000011 11111 01333   67888899999999999987664432221  1111222  333332 


Q ss_pred             -----------------eCCCcEEEEECCCCceEEEEeecCCc------cceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728          369 -----------------SADMSICIWRRKENEHICLSMLTGHS------GPVKCLAVEKDDESLSREKRWILYSGSLDKS  425 (474)
Q Consensus       369 -----------------s~dg~i~iwd~~~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~  425 (474)
                                       ..+|.+.-.|..+++..-......+.      .+...-...-.+.        +|+.++.||.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~--------~v~~g~~dG~  417 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN--------LVFAGAADGY  417 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC--------eEEEECCCCe
Confidence                             23577888888888743222222111      1111101111233        7888889999


Q ss_pred             EEEEEccCCCCCC
Q 047728          426 VKMWRVSEQAPPL  438 (474)
Q Consensus       426 i~vw~~~~~~~~~  438 (474)
                      |+.+|..+++...
T Consensus       418 l~ald~~tG~~lW  430 (488)
T cd00216         418 FRAFDATTGKELW  430 (488)
T ss_pred             EEEEECCCCceee
Confidence            9999999986543

The alignment model contains an 8-bladed beta-propeller.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.3e-05  Score=79.07  Aligned_cols=202  Identities=16%  Similarity=0.245  Sum_probs=133.4

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc-eeEEEecCCC-eEEEeeCCCc-----EEEEEcccCC
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA-VNSIVAGFDG-LVFTGSADGT-----VKVWRRELQG  294 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~~-~l~~~~~dg~-----i~iwd~~~~~  294 (474)
                      .|+|  |++.+..++.|+.+|.|.+.+ +..+.+..++++... |..+....+. .|++.+.|+.     |++|+++...
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4444  477889999999999999987 445666788887777 5555444443 7777776654     8999998654


Q ss_pred             Cce-eeee-ee-----eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc---ccccceeeeecceeeEEE--EecC
Q 047728          295 KGT-KHFF-SQ-----TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL---NLSHGGVLRGHKLAILCL--VTAG  362 (474)
Q Consensus       295 ~~~-~~~~-~~-----~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~v~~~--~~~~  362 (474)
                      ... .... ..     .......++.+++++.+-+.+++|-.+|.|.++.-+-   .............+|+.+  ..++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence            333 2211 01     1122467899999999999999999999999985321   111112223334455544  4466


Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          363 NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       363 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      ..++-...-..|.+|.+.+.. +....+..|...+.|..+++...        -+++++. ..|.+|+.....+
T Consensus       184 ~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~--------qfIca~~-e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTY--------QFICAGS-EFLYFYDSDGRGP  247 (933)
T ss_pred             ceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCc--------cEEEecC-ceEEEEcCCCcce
Confidence            653333334579999998554 44666888889999999988765        3555543 4588888776543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.50  E-value=1.1e-05  Score=80.08  Aligned_cols=183  Identities=10%  Similarity=0.111  Sum_probs=132.9

Q ss_pred             CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC  310 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (474)
                      ++..++-|+....+..+|+++.+..+........|.-+..+ +..+++|...|+|.+-|.+....      ...+..|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~------iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFET------IHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcCce------eeeeecccc
Confidence            45567778777888899999988777766555455555543 23899999999999999886553      677888888


Q ss_pred             cEEEEEEcCCCCEEEEEcC---------CCcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCCcEEEEECC
Q 047728          311 AVTALAISPDAAIVYCGSS---------DGLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~  380 (474)
                      .|..+..  .|+.|++++.         |..|+|||++....+.-+........+.|.|. ...+++++..|...+-|..
T Consensus       219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence            8876555  5788888765         55689999998765543333333344566664 6678888889999999943


Q ss_pred             CC-ce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          381 EN-EH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       381 ~~-~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +. ++ ..+..+......+..+.+++++.        .++.|..+|.|.+|.
T Consensus       297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~--------alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVNPNGSGISAFDISSNGD--------ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCccceeEEccCCCcceeEEecCCCc--------eEEEecccCcEeeec
Confidence            22 11 12333444455699999999999        999999999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.49  E-value=4.3e-07  Score=55.17  Aligned_cols=35  Identities=37%  Similarity=0.518  Sum_probs=32.8

Q ss_pred             ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728          214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR  248 (474)
Q Consensus       214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd  248 (474)
                      ..+.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.48  E-value=0.00019  Score=68.23  Aligned_cols=192  Identities=13%  Similarity=0.101  Sum_probs=104.8

Q ss_pred             eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--------cCcceeEEEec-----CCC----eEE
Q 047728          215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--------HDDAVNSIVAG-----FDG----LVF  277 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~-----~~~----~l~  277 (474)
                      .+....++|++++.+. =.+++.|..+|.+.|.|++....+..-..        ....++++.|.     .|+    .++
T Consensus        81 l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             EE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             heeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            3444688999999974 45999999999999999988877765321        22356777665     333    789


Q ss_pred             EeeCCCcEEEEEcccCCCc-eeeeeeeeeecccccEEEEE-EcCC--------------------CCEEEEEcCCCcEEE
Q 047728          278 TGSADGTVKVWRRELQGKG-TKHFFSQTLLKQECAVTALA-ISPD--------------------AAIVYCGSSDGLVNF  335 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~-~~~~--------------------~~~l~~~~~dg~i~v  335 (474)
                      +|...|.+.+|.+...... ....+......+.+.|..+. ++.+                    -+-+++...+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            9999999999988632222 22222222234556666554 3221                    112444455678999


Q ss_pred             eecCcccccceeeee-cceeeEEEE-----ecCCEEEEEeCCCcEEEEECCCCceEEEEeec--CCccceEEEEEeeCCc
Q 047728          336 WERELNLSHGGVLRG-HKLAILCLV-----TAGNLVFSGSADMSICIWRRKENEHICLSMLT--GHSGPVKCLAVEKDDE  407 (474)
Q Consensus       336 ~d~~~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~  407 (474)
                      +...+.+...+.+.. ......++.     ..+..|++-..+|.|++|.+-..+.+....+.  .....+....+.++|.
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence            988776555444422 112223332     24678888899999999999887754333332  1223455677788887

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=0.0002  Score=69.15  Aligned_cols=190  Identities=8%  Similarity=-0.010  Sum_probs=108.9

Q ss_pred             CEEEEEec--CCE-EEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          150 LVKAIVIS--NEK-IFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       150 ~V~~i~~~--~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      .+..-.|+  ++. ++..+.+   ..|.++|+.+++.....                                 ...+..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------------------~~~g~~  235 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------------------SSQGML  235 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------------------cCCCcE
Confidence            66677777  453 5544333   45888888776543211                                 123345


Q ss_pred             eEEEecCCCCEEEEE-ECC--CcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCc--EEEEEcccCCCc
Q 047728          224 SSLSMSEDQNLLYSA-SWD--KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGT--VKVWRRELQGKG  296 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~--i~iwd~~~~~~~  296 (474)
                      ....|+|||+.|+.. +.+  ..|.++|+.+++. ..+..+........|+|||  .+++....+.  |.+.|+..+.. 
T Consensus       236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-  313 (419)
T PRK04043        236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-  313 (419)
T ss_pred             EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence            567899999877644 333  5688889877764 3444434333456799999  4444444554  55555553321 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFS  367 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  367 (474)
                       .    ..... ..  ....|+|+|+.|+.....         ..|.+.|+.++... .+..........++|||+.|+.
T Consensus       314 -~----rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        314 -E----QVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             -E----eCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEE
Confidence             0    11111 11  124899999988776553         26788888766432 2222222334778999997776


Q ss_pred             EeCC-C--cEEEEECCCCc
Q 047728          368 GSAD-M--SICIWRRKENE  383 (474)
Q Consensus       368 gs~d-g--~i~iwd~~~~~  383 (474)
                      ...+ +  .+.+.++....
T Consensus       385 ~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        385 IKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             EEccCCcEEEEEEecCCCe
Confidence            5533 2  35566666543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.45  E-value=1.7e-07  Score=89.08  Aligned_cols=238  Identities=12%  Similarity=0.109  Sum_probs=148.9

Q ss_pred             ccCCeeEEEecCCC--CEEEEEECCCcEEEEEcCCcce--eeeeeecCcceeEEEecCCC--eEEEee----CCCcEEEE
Q 047728          219 HFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKC--LESVIAHDDAVNSIVAGFDG--LVFTGS----ADGTVKVW  288 (474)
Q Consensus       219 h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~--~l~~~~----~dg~i~iw  288 (474)
                      ....+.|+++.-+.  -+++.|..+|.|-+-.++...-  -.....+..+.++++|.+-.  .|++|-    .|..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            44567788776633  4778889999999988765432  23446678899999999874  666663    35679999


Q ss_pred             EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEE
Q 047728          289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFS  367 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s  367 (474)
                      |+...-........... +......+++|..+.+.+++|.....+.++|++........+......-..+.| .++++++
T Consensus       135 di~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             ecccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence            99865221111111111 233455688999999999999999999999998543332333222223345566 6788877


Q ss_pred             EeCCCcEEEEEC-CCCceEEEEeecCCc----cceEEEEEeeCCccccccceEEEEEecCC-CcEEEEEccCCCCCCC--
Q 047728          368 GSADMSICIWRR-KENEHICLSMLTGHS----GPVKCLAVEKDDESLSREKRWILYSGSLD-KSVKMWRVSEQAPPLV--  439 (474)
Q Consensus       368 gs~dg~i~iwd~-~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-g~i~vw~~~~~~~~~~--  439 (474)
                      -. ||.|-+||. ++-+. ++..+....    ..+..++|+|....       .+++...| ++|+++++..-..+..  
T Consensus       214 ~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtg-------lla~l~RdS~tIrlydi~~v~t~~s~n  284 (783)
T KOG1008|consen  214 NS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTG-------LLAVLSRDSITIRLYDICVVGTEGSAN  284 (783)
T ss_pred             cc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcc-------hhhhhccCcceEEEecccccCCccccc
Confidence            76 999999994 33221 122222222    24899999998764       56666654 6899999875322111  


Q ss_pred             -----CCcccccccCCC--CCCCccccCCCCCcC
Q 047728          440 -----STTQQHPLEGHG--VAPNSLPYAPSFSSQ  466 (474)
Q Consensus       440 -----~~~~~~~~~~~~--~~v~~l~~~p~~s~D  466 (474)
                           ......+++...  ..|....||+++.-.
T Consensus       285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~e  318 (783)
T KOG1008|consen  285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTE  318 (783)
T ss_pred             ccceeeecccccccccccccceeecCcCcCCccc
Confidence                 111111233222  567888888876333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.42  E-value=1.8e-07  Score=91.93  Aligned_cols=191  Identities=14%  Similarity=0.166  Sum_probs=134.3

Q ss_pred             ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e-EEEeeCCC-cEEEEEc
Q 047728          214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L-VFTGSADG-TVKVWRR  290 (474)
Q Consensus       214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~~~~~dg-~i~iwd~  290 (474)
                      ..+..|....+|++|+-+.++|+.|+..|.|+++++.+|........|..+|+-+.-+.+| . |.+.+... -..+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            3456688899999999999999999999999999999999999999999999999999998 4 44444444 5779987


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----cceeeEEEEecCCEE
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-----HKLAILCLVTAGNLV  365 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~l  365 (474)
                      .....     ....    -..-.++.|+.....-+.|+......+||+++.......+.+     .......|+|+..++
T Consensus      1175 ~s~~~-----~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1175 SSTGG-----PRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             ccccC-----cccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            64221     1111    123456777775555555666677999999998766554432     234556778887777


Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          366 FSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +-   ||  .+||++..+  .+..+...+..+ .-.|+|.+.        -++..+     .|||+++-
T Consensus      1246 ln---dG--vLWDvR~~~--aIh~FD~ft~~~-~G~FHP~g~--------eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1246 LN---DG--VLWDVRIPE--AIHRFDQFTDYG-GGGFHPSGN--------EVIINS-----EIWDMRTF 1293 (1516)
T ss_pred             ee---Cc--eeeeeccHH--HHhhhhhheecc-cccccCCCc--------eEEeec-----hhhhhHHH
Confidence            63   44  589998775  344444433222 234889887        555554     37888764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.35  E-value=0.0016  Score=62.47  Aligned_cols=116  Identities=19%  Similarity=0.198  Sum_probs=80.4

Q ss_pred             CCeeEEEecC-CCCEEEEE----ECCCc----EEEEEcCCcce--eeee-eecCcceeEEEecCCC-eEEEeeCCCcEEE
Q 047728          221 DAISSLSMSE-DQNLLYSA----SWDKT----FKVWRTSDYKC--LESV-IAHDDAVNSIVAGFDG-LVFTGSADGTVKV  287 (474)
Q Consensus       221 ~~V~~l~~~~-~~~~l~s~----s~dg~----i~iwd~~~~~~--~~~~-~~~~~~v~~v~~~~~~-~l~~~~~dg~i~i  287 (474)
                      ....++.|+- +...+.+.    +.+|.    -.+|++...+.  +... -.....|.+++++|+. .++.|+.||.|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3446677766 44455543    23443    34566554332  1111 2357789999999998 9999999999999


Q ss_pred             EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728          288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH  344 (474)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  344 (474)
                      ||...+.        .......-.++.++|+|+|.++++|+..|.+.+||+.-....
T Consensus       286 yD~~~~~--------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  286 YDTTRGV--------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             EEcCCCe--------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            9986442        222344556889999999999999999999999998655433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.33  E-value=9.5e-05  Score=76.02  Aligned_cols=237  Identities=17%  Similarity=0.157  Sum_probs=142.4

Q ss_pred             ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      .+.|.++.|.  .+.++.+..+|.|.+-|.++.......                                 .-...|.+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---------------------------------~vd~GI~a  114 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---------------------------------NVDNGISA  114 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---------------------------------eccCceEE
Confidence            3678888886  668888889999999877766443211                                 15568999


Q ss_pred             EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-----CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728          226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-----DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      ++|+||++.++..+..+++.+- ..+..++.....+     .+....+-|.....-+-|+. |.....+.....+     
T Consensus       115 aswS~Dee~l~liT~~~tll~m-T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek-----  187 (1265)
T KOG1920|consen  115 ASWSPDEELLALITGRQTLLFM-TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEK-----  187 (1265)
T ss_pred             EeecCCCcEEEEEeCCcEEEEE-eccccchhccccccccccccccceecccccceeeecch-hhhcccccccccc-----
Confidence            9999999999999887777654 3444443322211     12222333333222222211 1111111110000     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEE-----cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe---CCC
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCG-----SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS---ADM  372 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs---~dg  372 (474)
                      .. ......+.=+.++|--||.++++.     .....|++||.+................+++.|.|.++++-.   .|+
T Consensus       188 ~~-~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~  266 (1265)
T KOG1920|consen  188 AL-EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS  266 (1265)
T ss_pred             cc-cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence            00 001122334568999999999883     223789999988332222233334456788888999988754   466


Q ss_pred             cEEEEECCCCceE-EEEeecCCccceEEEEEeeCCccccccceEEEEE---ecCCCcEEEEEccC
Q 047728          373 SICIWRRKENEHI-CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS---GSLDKSVKMWRVSE  433 (474)
Q Consensus       373 ~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s---~s~Dg~i~vw~~~~  433 (474)
                      .|.+|..+..++- ....+.....+|..++|+.++.        +|+.   ......|++|-+.+
T Consensus       267 ~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd--------iLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  267 DIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD--------ILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cEEEEecCCccccccccCCcccccchheeeecCCCC--------ceeeeecccccceEEEEEecC
Confidence            8999987654321 1222333445599999999998        7777   55555699998765

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=1.7e-05  Score=76.69  Aligned_cols=163  Identities=15%  Similarity=0.141  Sum_probs=108.2

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +...|.--++...+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++. ++++|+..|.|.++-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44445555667788999999999999999976655433222 234445556677776 7888999999999988765443


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---cccceeeeecceeeEEEEecCCEEEEEeCCCc
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN---LSHGGVLRGHKLAILCLVTAGNLVFSGSADMS  373 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~  373 (474)
                      ...........|...|++++|++++..+++|...|.|.+-.++..   ....+.+..-...|+.+..-..+|+.++--..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~  191 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC  191 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence            333333344457899999999999999999999999998877762   11112233344566777665555554443332


Q ss_pred             EEEEECCCC
Q 047728          374 ICIWRRKEN  382 (474)
Q Consensus       374 i~iwd~~~~  382 (474)
                       .+++++.+
T Consensus       192 -~Lc~tE~e  199 (726)
T KOG3621|consen  192 -ILCQTEAE  199 (726)
T ss_pred             -heeecchh
Confidence             34444433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.25  E-value=0.0017  Score=55.73  Aligned_cols=137  Identities=17%  Similarity=0.166  Sum_probs=85.2

Q ss_pred             CEEEEeeCCCcEEEEeCCccccccc-cCccCEEEEEe-cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728          121 DLLYTGSDSKNIRVWKNQREFSGFK-SNSGLVKAIVI-SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC  198 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~~~~~~~~-~h~~~V~~i~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (474)
                      .+++.|+..+.+.--|.+..-..++ .-...|.+-+. -++.++.|+..|.+.+.++.++..........          
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----------   93 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----------   93 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh----------
Confidence            4555566565555544332111111 11223333333 38899999999999999999997655443221          


Q ss_pred             ecCCCCeEEEeeeccceeeeccCCeeE-EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CCeE
Q 047728          199 SMKPSNYIEVRRHRNGLWIKHFDAISS-LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DGLV  276 (474)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~l  276 (474)
                                             .|.+ ....+++..++.|+.|++.+..|.++..++...+.......+-++.+ ++.|
T Consensus        94 -----------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl  150 (354)
T KOG4649|consen   94 -----------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL  150 (354)
T ss_pred             -----------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceE
Confidence                                   1221 23366899999999999999999999999888765444333444555 4466


Q ss_pred             EEeeCCCcEEEEEc
Q 047728          277 FTGSADGTVKVWRR  290 (474)
Q Consensus       277 ~~~~~dg~i~iwd~  290 (474)
                      +.+...|.|.--..
T Consensus       151 y~a~t~G~vlavt~  164 (354)
T KOG4649|consen  151 YAAITAGAVLAVTK  164 (354)
T ss_pred             EEEeccceEEEEcc
Confidence            66666666554443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.22  E-value=0.00041  Score=65.97  Aligned_cols=209  Identities=13%  Similarity=0.117  Sum_probs=113.9

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-------------------------------------------eeeee
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-------------------------------------------CLESV  258 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-------------------------------------------~~~~~  258 (474)
                      .|+.+.|.++...|++|...|.|.||.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998899999999999998652110                                           01122


Q ss_pred             eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee--eeecccccEEEEEEcC-----CC---CEEEEEc
Q 047728          259 IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ--TLLKQECAVTALAISP-----DA---AIVYCGS  328 (474)
Q Consensus       259 ~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~-----~~---~~l~~~~  328 (474)
                      ....++|++++.+.-|++++|..+|.+.|.|+|............  ........++++.|.-     |+   -.+++|+
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            334689999999988899999999999999997443211111111  1112445688888873     33   4788999


Q ss_pred             CCCcEEEeecCc--ccccc----eeeeecceeeEEEEe---c-----------------C---CEEEEEeCCCcEEEEEC
Q 047728          329 SDGLVNFWEREL--NLSHG----GVLRGHKLAILCLVT---A-----------------G---NLVFSGSADMSICIWRR  379 (474)
Q Consensus       329 ~dg~i~v~d~~~--~~~~~----~~~~~~~~~v~~~~~---~-----------------~---~~l~sgs~dg~i~iwd~  379 (474)
                      ..|.+.+|.+.-  +....    .....+...+..+.+   +                 +   .-++....+..++++..
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999999998742  11110    111133344443332   1                 0   12444445778999998


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      .+.+.. ...+ ...-....+.+.+-..   ......|++-..+|.|+++.+..-+
T Consensus       243 ~~~k~~-~K~~-~~~~~~~~~~vv~~~~---~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  243 PKSKGA-HKSF-DDPFLCSSASVVPTIS---RNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             T---EE-EEE--SS-EEEEEEEEEEEE----EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             CCCccc-ceee-ccccccceEEEEeecc---cCCceEEEEEECCCcEEEEECCCch
Confidence            876643 2233 2222334445532000   0111278888999999999998753

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.21  E-value=0.001  Score=65.90  Aligned_cols=241  Identities=16%  Similarity=0.127  Sum_probs=130.2

Q ss_pred             CEEEEeeCCCcEEEEeCC--ccccccccCcc-----CE-EEEEecCCEEEEEe---------CCCeEEEEecCCCCccee
Q 047728          121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNSG-----LV-KAIVISNEKIFSGH---------QDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~-----~V-~~i~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~  183 (474)
                      +.++.++.+|.|+.+|..  +.+-.+.....     .+ ....+.++.++.++         .+|.|...|..+++....
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            778888888888888843  43333322211     01 12233356666654         367888999999887765


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeecc-CCe-eEEEecCCCCEEEEEECCC------------------c
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF-DAI-SSLSMSEDQNLLYSASWDK------------------T  243 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~~~~~~~l~s~s~dg------------------~  243 (474)
                      .........            ....... ......+. ..| ...++.+.+.+++.++.++                  .
T Consensus       191 ~~~~~~~~~------------~~~~~~~-~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~  257 (488)
T cd00216         191 FYTTEPDPN------------AFPTWGP-DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS  257 (488)
T ss_pred             eeccCCCcC------------CCCCCCC-CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence            544211000            0000000 00000011 111 1244555566777777665                  7


Q ss_pred             EEEEEcCCcceeeeeeecCccee--------EEE-ec-CCC----eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc
Q 047728          244 FKVWRTSDYKCLESVIAHDDAVN--------SIV-AG-FDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE  309 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~~~~~~v~--------~v~-~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (474)
                      |.-+|.++++.+..+..-.....        .+. .. -++    .+++++.+|.+...|.++++........       
T Consensus       258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------  330 (488)
T cd00216         258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------  330 (488)
T ss_pred             EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------
Confidence            99999999999887643111110        111 00 122    5788889999999999876543221111       


Q ss_pred             ccEEEEEEcCCCCEEEEE------------------cCCCcEEEeecCcccccceeeee---------cceeeEEEEecC
Q 047728          310 CAVTALAISPDAAIVYCG------------------SSDGLVNFWERELNLSHGGVLRG---------HKLAILCLVTAG  362 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~~~---------~~~~v~~~~~~~  362 (474)
                        ...++.+|  ..++.+                  ..+|.+.-+|+.+++.+-....+         .......+...+
T Consensus       331 --~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g  406 (488)
T cd00216         331 --EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG  406 (488)
T ss_pred             --ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence              01122233  222222                  23567777888777654433322         000111233467


Q ss_pred             CEEEEEeCCCcEEEEECCCCceE
Q 047728          363 NLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       363 ~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      .+|+.++.||.|+.+|.++++..
T Consensus       407 ~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         407 NLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             CeEEEECCCCeEEEEECCCCcee
Confidence            89999999999999999999854

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.17  E-value=0.0025  Score=54.73  Aligned_cols=138  Identities=14%  Similarity=0.173  Sum_probs=85.3

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      ..+++.|+..+.+.--|..+++.......+                                 ..|.+-+.- -|++++.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---------------------------------~RiE~sa~v-vgdfVV~   68 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------------------------------VRIECSAIV-VGDFVVL   68 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC---------------------------------ceeeeeeEE-ECCEEEE
Confidence            567888888888888888887765433221                                 122222222 4678999


Q ss_pred             EECCCcEEEEEcCCcceeeeeeecCc-ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          238 ASWDKTFKVWRTSDYKCLESVIAHDD-AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      |+..|.+++.+.++|+....+...+. .+.. ...+++ .+..|+.|++.+..|.+....      .-..+-......+-
T Consensus        69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~c------VykskcgG~~f~sP  141 (354)
T KOG4649|consen   69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGC------VYKSKCGGGTFVSP  141 (354)
T ss_pred             EEccCcEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccccce------EEecccCCceeccc
Confidence            99999999999999988877765332 2222 334555 999999999999999886543      12222222223334


Q ss_pred             EEcCCCCEEEEEcCCCcEEEe
Q 047728          316 AISPDAAIVYCGSSDGLVNFW  336 (474)
Q Consensus       316 ~~~~~~~~l~~~~~dg~i~v~  336 (474)
                      ++.|-...|+++...|.+.--
T Consensus       142 ~i~~g~~sly~a~t~G~vlav  162 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAV  162 (354)
T ss_pred             eecCCCceEEEEeccceEEEE
Confidence            455533344444455554433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.15  E-value=2.2e-06  Score=81.73  Aligned_cols=194  Identities=19%  Similarity=0.202  Sum_probs=121.0

Q ss_pred             cCEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          149 GLVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       149 ~~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      ..+.|+++.    ...++.|..+|.|.+-.+....-...                              .+..+|...++
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~------------------------------E~tp~~ar~Ct  106 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA------------------------------EVTPGYARPCT  106 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccc------------------------------eeccccccccc
Confidence            345666654    23577888889888877765432210                              12234888999


Q ss_pred             EEEecC-CCCEEEEEE----CCCcEEEEEcCCc--ceeee--eee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728          225 SLSMSE-DQNLLYSAS----WDKTFKVWRTSDY--KCLES--VIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       225 ~l~~~~-~~~~l~s~s----~dg~i~iwd~~~~--~~~~~--~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      +++|++ |.+.||+|-    .|..+.|||+.++  .+...  +.+ -......++|..+. .+++|.....++++|++..
T Consensus       107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs  186 (783)
T KOG1008|consen  107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS  186 (783)
T ss_pred             ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence            999999 667777763    4577999999876  22222  222 33455688888777 7888888899999999843


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeec-Ccccccceeeeec------ceeeEEEEec-CCE
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWER-ELNLSHGGVLRGH------KLAILCLVTA-GNL  364 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~------~~~v~~~~~~-~~~  364 (474)
                      ..       ....-....+..+.++| .+++++.- .||.|.+||. ++-+.+...+...      ....+++.|- ...
T Consensus       187 ~~-------~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  187 LD-------SVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hh-------hhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            21       11122233577788889 77777654 5999999993 3322222111111      1223444442 345


Q ss_pred             EEEEeC-CCcEEEEECC
Q 047728          365 VFSGSA-DMSICIWRRK  380 (474)
Q Consensus       365 l~sgs~-dg~i~iwd~~  380 (474)
                      +++... .++|+++|+.
T Consensus       259 la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhhhccCcceEEEeccc
Confidence            555554 5799999985

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=2.8e-06  Score=83.86  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=133.2

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      +....|..|...-+|++|+  .+.|+.|+..|.|+++++.++....                                ..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--------------------------------s~ 1139 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--------------------------------SV 1139 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc--------------------------------cc
Confidence            4556778899999999999  5689999999999999999986542                                23


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCC--cEEEEEcCC-cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDK--TFKVWRTSD-YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~  292 (474)
                      ..|..+|+-+.-+.+|..+++.+.-.  -..+|++.+ +...+++.    .-.++.|+... .-+.|+.-....+||+.+
T Consensus      1140 ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1140 NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred             cccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEeccc
Confidence            45999999998888998877655333  467899864 34444443    23567787665 445566667789999987


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM  372 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg  372 (474)
                      .......  ..........-.+..|+|+..+++   .||  .+||.+....+..+-+-.....-.|.|+|..++.-+   
T Consensus      1216 ~~~l~ty--lt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1216 CSPLQTY--LTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred             CcHHHHh--cCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec---
Confidence            6542211  111122223337788999888776   455  479998775543332221112234678888888765   


Q ss_pred             cEEEEECCCCc
Q 047728          373 SICIWRRKENE  383 (474)
Q Consensus       373 ~i~iwd~~~~~  383 (474)
                        .|||+++.+
T Consensus      1286 --EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1286 --EIWDMRTFK 1294 (1516)
T ss_pred             --hhhhhHHHH
Confidence              489998866

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.14  E-value=0.0062  Score=55.48  Aligned_cols=199  Identities=15%  Similarity=0.170  Sum_probs=118.8

Q ss_pred             eEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee
Q 047728          224 SSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  301 (474)
                      ..++++.++++++...  -...|.|.|+..++.+..+....  +..+--..+..+.+-+.||.+.-..+...++... ..
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~-~~  174 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ-KS  174 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE-EE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeE-ee
Confidence            3457788999888764  45679999999999888775422  1222222223688889999999999986665442 22


Q ss_pred             eeeeecccccE-EEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-------------eeeeecceeeEEEEecCCEEEE
Q 047728          302 SQTLLKQECAV-TALAISPDAAIVYCGSSDGLVNFWERELNLSHG-------------GVLRGHKLAILCLVTAGNLVFS  367 (474)
Q Consensus       302 ~~~~~~~~~~v-~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~s  367 (474)
                      ...+.....++ ..-++...+..++-.+.+|.|+-.|+.......             .-.+......++++...+.|++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence            22233333333 233455556666667888998888876543111             0112222345667665555554


Q ss_pred             Ee--------CCC--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE-ecCCCcEEEEEccCCC
Q 047728          368 GS--------ADM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS-GSLDKSVKMWRVSEQA  435 (474)
Q Consensus       368 gs--------~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s-~s~Dg~i~vw~~~~~~  435 (474)
                      --        .|+  .|.++|+.+++.  +..+.. ..++.+|+++.+.+.       +|++ ...++.|.+||..+++
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l-~~~~~Si~Vsqd~~P-------~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPL-EHPIDSIAVSQDDKP-------LLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEE-EEEESEEEEESSSS--------EEEEEETTTTEEEEEETTT--
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeE--EEEEeC-CCccceEEEccCCCc-------EEEEEcCCCCeEEEEeCcCCc
Confidence            32        122  366677777774  444442 246889999998775       5654 4568999999999983

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.12  E-value=0.0063  Score=54.75  Aligned_cols=225  Identities=15%  Similarity=0.169  Sum_probs=131.7

Q ss_pred             EEEEEeCCCe-EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728          160 KIFSGHQDGK-IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA  238 (474)
Q Consensus       160 ~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  238 (474)
                      .++.+-.-|+ ..+||..+++......                        ..+...|.+|      -+|++||++|++.
T Consensus        19 avafaRRPG~~~~v~D~~~g~~~~~~~------------------------a~~gRHFyGH------g~fs~dG~~LytT   68 (305)
T PF07433_consen   19 AVAFARRPGTFALVFDCRTGQLLQRLW------------------------APPGRHFYGH------GVFSPDGRLLYTT   68 (305)
T ss_pred             EEEEEeCCCcEEEEEEcCCCceeeEEc------------------------CCCCCEEecC------EEEcCCCCEEEEe
Confidence            4555555554 5677877776543221                        1222455666      3789999999986


Q ss_pred             E-----CCCcEEEEEcC-CcceeeeeeecCcceeEEEecCCC-eEEEeeC-------CCc-----------EEEEEcccC
Q 047728          239 S-----WDKTFKVWRTS-DYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-------DGT-----------VKVWRRELQ  293 (474)
Q Consensus       239 s-----~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-------dg~-----------i~iwd~~~~  293 (474)
                      -     ..|.|-|||.. +.+.+..+..|.-....+.+.||+ .|+++.-       .|.           +.+.|..++
T Consensus        69 End~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   69 ENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             ccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence            4     34889999998 778888888888778889999999 5555421       122           233333322


Q ss_pred             CCceeeeeeeee--ecccccEEEEEEcCCCCEEEEEcCCCc-------EEEeecCccccccee----ee--ecceeeEEE
Q 047728          294 GKGTKHFFSQTL--LKQECAVTALAISPDAAIVYCGSSDGL-------VNFWERELNLSHGGV----LR--GHKLAILCL  358 (474)
Q Consensus       294 ~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~-------i~v~d~~~~~~~~~~----~~--~~~~~v~~~  358 (474)
                      ..    .....+  ..|...|..+++.++|..++..-..|.       |.+++..........    ..  .+-...+++
T Consensus       149 ~l----l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~  224 (305)
T PF07433_consen  149 AL----LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAA  224 (305)
T ss_pred             ce----eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEE
Confidence            21    111122  346678999999999887776544432       334443322111111    01  122334666


Q ss_pred             EecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          359 VTAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       359 ~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.++.++++.+ ..+.+.+||..+++......+    ..+..++-.+++         +++|.+. |.  ++.+...
T Consensus       225 ~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~---------f~~ssG~-G~--~~~~~~~  285 (305)
T PF07433_consen  225 DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG---------FLVSSGQ-GQ--LIRLSPD  285 (305)
T ss_pred             eCCCCEEEEECCCCCEEEEEECCCCCEeecccc----CceeeeeecCCc---------eEEeCCC-cc--EEEccCc
Confidence            66777776555 678999999999984322222    235556555554         4666554 33  4444443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.10  E-value=0.0013  Score=64.61  Aligned_cols=212  Identities=10%  Similarity=0.100  Sum_probs=129.4

Q ss_pred             EecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC----cEEEEEcccCCCceeee
Q 047728          227 SMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG----TVKVWRRELQGKGTKHF  300 (474)
Q Consensus       227 ~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~  300 (474)
                      -+.|||+.+... -..+.+.+.|.++.+...++.... ....+.+++++ ++++.+.+.    ++..-+...  .     
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~-----  270 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--R-----  270 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc--C-----
Confidence            345677665433 345778888998888777776533 44677888988 665554321    222222211  0     


Q ss_pred             eeeeeecccccEEEE--------EEcCCCCEEEEEcCCCcEEEeecCc-----ccccceeeeecceeeEEEEecCCEEEE
Q 047728          301 FSQTLLKQECAVTAL--------AISPDAAIVYCGSSDGLVNFWEREL-----NLSHGGVLRGHKLAILCLVTAGNLVFS  367 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l--------~~~~~~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~l~s  367 (474)
                               .  ..+        ++.++|++...  .++.|.+.|..+     ......+..+....-+.++|||+++++
T Consensus       271 ---------d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyV  337 (635)
T PRK02888        271 ---------D--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIA  337 (635)
T ss_pred             ---------c--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEE
Confidence                     0  122        23447777665  367899999987     333444455556666889999998877


Q ss_pred             Ee-CCCcEEEEECCCCce----------EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC--
Q 047728          368 GS-ADMSICIWRRKENEH----------ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ--  434 (474)
Q Consensus       368 gs-~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~--  434 (474)
                      ++ .+.+|.|.|+.+.+.          .......--. .-...+|.+++.        ...|--.|..|..|++...  
T Consensus       338 anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~--------aytslf~dsqv~kwn~~~a~~  408 (635)
T PRK02888        338 NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN--------AYTTLFLDSQIVKWNIEAAIR  408 (635)
T ss_pred             eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCC--------EEEeEeecceeEEEehHHHHH
Confidence            66 589999999987542          1122222222 234567888887        7888889999999999862  


Q ss_pred             ----CC--CCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          435 ----AP--PLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       435 ----~~--~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                          +.  +.......+...+|.....+    -+-.+||++|++
T Consensus       409 ~~~g~~~~~v~~k~dV~y~pgh~~~~~g----~t~~~dgk~l~~  448 (635)
T PRK02888        409 AYKGEKVDPIVQKLDVHYQPGHNHASMG----ETKEADGKWLVS  448 (635)
T ss_pred             HhccccCCcceecccCCCccceeeecCC----CcCCCCCCEEEE
Confidence                11  11122233333444332222    256889999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.09  E-value=0.0014  Score=61.31  Aligned_cols=180  Identities=14%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             CcEEEEEcCCcceeeeeeecC-cceeEE---EecC-----CCeEEEeeC----------CCcEEEEEcccCCCceeeeee
Q 047728          242 KTFKVWRTSDYKCLESVIAHD-DAVNSI---VAGF-----DGLVFTGSA----------DGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~-~~v~~v---~~~~-----~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      ..|++.|..+.+.+..+.-.. ..+.++   .+..     ..++++|+.          .|.|.++++............
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            358888888888776665432 334444   3332     226776654          288999999864111112222


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-ccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-SHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      .......++|++++-- ++. |+++ ..+.|.+|++.... ............+.++...+++++.|.....+.++..+.
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            2334457889998877 444 4433 34789999998776 333333334457888888899999999999999885543


Q ss_pred             --CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          382 --NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       382 --~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                        .+...+ .-......++++.|-+++.        .++.+..+|.|.++....
T Consensus       159 ~~~~l~~v-a~d~~~~~v~~~~~l~d~~--------~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  159 ENNKLILV-ARDYQPRWVTAAEFLVDED--------TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             TTE-EEEE-EEESS-BEEEEEEEE-SSS--------EEEEEETTSEEEEEEE-S
T ss_pred             cCCEEEEE-EecCCCccEEEEEEecCCc--------EEEEEcCCCeEEEEEECC
Confidence              222222 2233455689999987776        799999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.07  E-value=7.4e-05  Score=71.37  Aligned_cols=74  Identities=15%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      .....|.|++++|+...|+.|+.||.|.+||...+..  .+....-.++.++|+|+| .+++|+..|.+.+||+...
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            4778899999999999999999999999999876533  333445678899999999 8999999999999998644

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.06  E-value=0.00019  Score=73.03  Aligned_cols=137  Identities=16%  Similarity=0.182  Sum_probs=93.3

Q ss_pred             ECCCcEEEEEcCCcceeeeeeecCcc-eeEEEecCC------CeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728          239 SWDKTFKVWRTSDYKCLESVIAHDDA-VNSIVAGFD------GLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA  311 (474)
Q Consensus       239 s~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (474)
                      .....|+-.|++.|+.+..+..+... |..++-...      ...+.|-.+..|..||.|..+... .............
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~-v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL-VDSQSKQYSSKNN  579 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce-eeccccccccCCC
Confidence            35678999999999999999987754 666543221      167889999999999999754211 1111112234556


Q ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEEC
Q 047728          312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                      ..|++-..+| +||+|+.+|.|++||.- +..-...+.+-..+|  ++++.||++|++.+ +..|.|++.
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            7788777666 67779999999999953 333334444444555  56677999988766 556777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.99  E-value=0.0027  Score=65.89  Aligned_cols=225  Identities=13%  Similarity=0.092  Sum_probs=125.9

Q ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCCcccccc-ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          111 GHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGF-KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~-~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      +.|.++.|-  ++-++.+..+|.|.+-|........ ..-...|.+++|+  ++.++..+.++++.+-+-+-. ......
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~-~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE-PIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc-chhccc
Confidence            568888875  6678888888999888865443333 3346789999998  567777777777766432111 000000


Q ss_pred             e-cccCccceeeeeecCCCCeEEEeeecc----------cee---eeccCCeeEEEecCCCCEEEEE-----ECCCcEEE
Q 047728          186 V-GTLPTFKDFIKCSMKPSNYIEVRRHRN----------GLW---IKHFDAISSLSMSEDQNLLYSA-----SWDKTFKV  246 (474)
Q Consensus       186 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~h~~~V~~l~~~~~~~~l~s~-----s~dg~i~i  246 (474)
                      . ........++...... ...++++...          ...   ..-.+.=+.|+|--||+++++.     .....|++
T Consensus       148 L~~d~~~~sk~v~VGwGr-keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGR-KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             cccccccccccceecccc-cceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            0 0000000001100000 0000110000          000   0011223468999999999883     23378999


Q ss_pred             EEcCCcceeeeeeecCcceeEEEecCCC-eEEEe---eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728          247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG---SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  322 (474)
                      ||-+ |..-..-....+.-.+++|-|.| .+++-   ..|+.|.+|..+....+.   +..........+..++|+.++.
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~---f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE---FVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc---cccCCcccccchheeeecCCCC
Confidence            9976 44333222333445678999998 55543   346679999765322211   2222333444599999999999


Q ss_pred             EEEE---EcCCCcEEEeecCcc
Q 047728          323 IVYC---GSSDGLVNFWERELN  341 (474)
Q Consensus       323 ~l~~---~~~dg~i~v~d~~~~  341 (474)
                      .|++   ......|++|-..+.
T Consensus       303 iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ceeeeecccccceEEEEEecCe
Confidence            9988   445556999987654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.98  E-value=0.0081  Score=53.10  Aligned_cols=201  Identities=13%  Similarity=0.064  Sum_probs=108.3

Q ss_pred             eccCCeeEEEecCCCCEE-EEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEee-CCCcEEEEEcccCC
Q 047728          218 KHFDAISSLSMSEDQNLL-YSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGS-ADGTVKVWRRELQG  294 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~-~dg~i~iwd~~~~~  294 (474)
                      +-...++.|+|+|+.+.| ++....+.|..++. +|+.+..+.-.. +..-.|++..++.++... .++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            355669999999976644 55556777888886 578888775443 567889998888555544 58899999885433


Q ss_pred             Cceeeee-----eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc---ccccce-eeee--------cceeeEE
Q 047728          295 KGTKHFF-----SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL---NLSHGG-VLRG--------HKLAILC  357 (474)
Q Consensus       295 ~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~-~~~~--------~~~~v~~  357 (474)
                      .......     ......+...+..++|++.++.|+++-+..-..+|.+..   ...... ....        ....-+.
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence            2211111     111123556799999999888888887776677776653   111100 0000        1122244


Q ss_pred             EEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecC-Cc------cceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          358 LVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTG-HS------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       358 ~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      +.+. +.+++.......|..+|. .++......+.. ..      ..--.|+|.++|.         |+..++-+...+|
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~---------LYIvsEpNlfy~f  247 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN---------LYIVSEPNLFYRF  247 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT-----------EEEEETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCC---------EEEEcCCceEEEe
Confidence            4553 567777778888999994 455433344443 11      2467899999986         5555566555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.93  E-value=0.0011  Score=49.59  Aligned_cols=100  Identities=25%  Similarity=0.315  Sum_probs=69.4

Q ss_pred             eeEEEecC-C---CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee
Q 047728          223 ISSLSMSE-D---QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       223 V~~l~~~~-~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      |++|++.. +   .+.|++|+.|..|++|+-  .+.+..+.. .+.|..++-...+.++.+..+|+|-+|+-...     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-----   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-----   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence            56777765 2   268999999999999973  466666654 56788888777789999999999999975311     


Q ss_pred             eeeeeeeecccccEEEEEEcC-C--C-CEEEEEcCCCcEE
Q 047728          299 HFFSQTLLKQECAVTALAISP-D--A-AIVYCGSSDGLVN  334 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~-~--~-~~l~~~~~dg~i~  334 (474)
                          .........+.++++.. +  | ..|++|-.+|.|-
T Consensus        74 ----lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 ----LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ----eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                11122333466665544 2  2 3688888888764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.91  E-value=0.0055  Score=59.13  Aligned_cols=66  Identities=20%  Similarity=0.354  Sum_probs=46.5

Q ss_pred             EEEEEEcCCEEEEeeCC----------C-cEEEEe-CCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCC
Q 047728          113 IYSLAAAGDLLYTGSDS----------K-NIRVWK-NQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       113 i~~~~~~~~~l~tgs~d----------g-~v~vwd-~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      +.++++.|..+|...++          . .|+||+ .++.+..+.-..+.|.++.|. .+.|+.-..||.++++|+...
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            44555555555555433          2 488887 445555555445899999998 678999999999999998644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00014  Score=71.92  Aligned_cols=71  Identities=20%  Similarity=0.258  Sum_probs=62.8

Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.|.+|.....
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            4579999988888888888999999988877766677899999999999999 9999999999999987643

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.90  E-value=0.0021  Score=63.22  Aligned_cols=108  Identities=11%  Similarity=-0.050  Sum_probs=74.2

Q ss_pred             CCCCEEEEEECCCcEEEEEcCC-----cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc-----e
Q 047728          230 EDQNLLYSASWDKTFKVWRTSD-----YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG-----T  297 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~-----~  297 (474)
                      ++|++...  .++.|.+.|..+     .+.+..+. -......+.++|||  .++++..+.+|.|.|+......     .
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            46666665  367899999988     34455554 35667899999999  5666777999999998764320     0


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      ..........-.......+|+++|+...+-.-|..|..|++..
T Consensus       363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            0001111112234455678999999888888999999999876

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.89  E-value=2.7e-05  Score=65.33  Aligned_cols=142  Identities=23%  Similarity=0.241  Sum_probs=92.0

Q ss_pred             eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee
Q 047728          275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       275 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                      .+..-+.||.|+-++++......     .....+...   ...-.-+..+++|+.+|.|++|..............-...
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~-----rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~  103 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESC-----RSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES  103 (238)
T ss_pred             hhccccCCcccccchhhhhhhhh-----hhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence            56677889999988877432210     111111111   1122245678899999999999876333332333333445


Q ss_pred             eEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCc-cceEEEEEeeCCccccccceEEEEEe--cCCCcEEE
Q 047728          355 ILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHS-GPVKCLAVEKDDESLSREKRWILYSG--SLDKSVKM  428 (474)
Q Consensus       355 v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~l~s~--s~Dg~i~v  428 (474)
                      +.+.-|.   +.+.+++..||.|+.|++.-.+.  +.....|. .++..+..+..++        +++.+  |.|..++.
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~--------~i~~a~~S~d~~~k~  173 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDE--------FLKIADTSHDRVLKK  173 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCc--------eEEeeccccchhhhh
Confidence            5555553   55889999999999999987773  34455566 5666666666666        67777  88888999


Q ss_pred             EEccCC
Q 047728          429 WRVSEQ  434 (474)
Q Consensus       429 w~~~~~  434 (474)
                      |++..-
T Consensus       174 W~ve~~  179 (238)
T KOG2444|consen  174 WNVEKI  179 (238)
T ss_pred             cchhhh
Confidence            988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00049  Score=68.29  Aligned_cols=105  Identities=16%  Similarity=0.216  Sum_probs=73.4

Q ss_pred             EEEEEEcCCEEEEee----CCCcEEEE-eCCccccccccCccCEEEEEecCC--EEEEEeCCCeEEEEecCCCCcceeee
Q 047728          113 IYSLAAAGDLLYTGS----DSKNIRVW-KNQREFSGFKSNSGLVKAIVISNE--KIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       113 i~~~~~~~~~l~tgs----~dg~v~vw-d~~~~~~~~~~h~~~V~~i~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      |.++.|+..++|+++    ..|.|.|| |.+++.... .-.-.+++++|++.  .|+.|-.-|.+.+|...+.+...   
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht---   95 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT---   95 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeee---
Confidence            445555666666654    36788888 444432211 12233566899854  57778888999999887654321   


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~  250 (474)
                                                   +-..|..+|..+.|+++|..++++..-|.|.+|...
T Consensus        96 -----------------------------v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 -----------------------------VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             -----------------------------eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence                                         112399999999999999999999999999999875

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00024  Score=64.41  Aligned_cols=128  Identities=12%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             EEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-
Q 047728          244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-  320 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-  320 (474)
                      +++.+..+.+...-+..+...|..++|+|..  ++..++.+..|+|.|+++...      ......+ ..+++++|+-+ 
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde  247 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDE  247 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCC
Confidence            6777777777777777888999999999986  789999999999999986542      3333334 78999999985 


Q ss_pred             CCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEE--------ecCCEEEEEeCCCcEEEEECC
Q 047728          321 AAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLV--------TAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~--------~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      .++|++|...|.|.+||++....+...+.+  ...++..++        +.+.+++....+  +..|++.
T Consensus       248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~  315 (463)
T KOG1645|consen  248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV  315 (463)
T ss_pred             cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence            568899999999999999877554443332  122333333        235566555544  5566654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.82  E-value=0.0026  Score=60.40  Aligned_cols=231  Identities=13%  Similarity=0.088  Sum_probs=115.9

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-e-------c---------CcceeEEEecCCC-eEEE-ee
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-A-------H---------DDAVNSIVAGFDG-LVFT-GS  280 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~-------~---------~~~v~~v~~~~~~-~l~~-~~  280 (474)
                      ...+....|+|+|+.++-.. ++.|.+++..+++..+.-. +       -         -+.-..+.|+||+ .|+. -.
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            45678899999999998876 5789999887764432211 1       0         1223568899999 4443 33


Q ss_pred             CCCcEEEEEcc-----------------------------------cCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          281 ADGTVKVWRRE-----------------------------------LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       281 ~dg~i~iwd~~-----------------------------------~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      .+..|+.+.+.                                   .+... ..............+..+.|.+++..|+
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEE
Confidence            44444444321                                   11100 0000001123345678888999888444


Q ss_pred             EE--cCCC---cEEEeecCcccccceeeeeccee-----eEEEE-ec-CCEEEEEeCCCcEEEE--ECCCCceEEEEeec
Q 047728          326 CG--SSDG---LVNFWERELNLSHGGVLRGHKLA-----ILCLV-TA-GNLVFSGSADMSICIW--RRKENEHICLSMLT  391 (474)
Q Consensus       326 ~~--~~dg---~i~v~d~~~~~~~~~~~~~~~~~-----v~~~~-~~-~~~l~sgs~dg~i~iw--d~~~~~~~~~~~~~  391 (474)
                      +.  ..+.   .+.++|..++.............     ...+. ++ ..++.....||.-+||  +...+.   ...+.
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT  276 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK---PRQLT  276 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE---EEESS
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc---eeccc
Confidence            33  3332   35556766553322222222222     23333 34 4556666677765555  444444   33555


Q ss_pred             CCccceEE-EEEeeCCccccccceEEEEEecCC--CcEEEEEccCC-CCCCCCCcccccccCCCCCCCccccCCCCCcCC
Q 047728          392 GHSGPVKC-LAVEKDDESLSREKRWILYSGSLD--KSVKMWRVSEQ-APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQG  467 (474)
Q Consensus       392 ~h~~~v~~-l~~~~~~~~~~~~~~~~l~s~s~D--g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg  467 (474)
                      ...-.|+. +.+++++..       +.+++..+  +.-.||.+.-. ....   .++....+.   -    +.++|||||
T Consensus       277 ~G~~~V~~i~~~d~~~~~-------iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~---~----~~~~~Spdg  339 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNR-------IYFTANGDNPGERHLYRVSLDSGGEP---KCLTCEDGD---H----YSASFSPDG  339 (353)
T ss_dssp             -SSS-EEEEEEEECTSSE-------EEEEESSGGTTSBEEEEEETTETTEE---EESSTTSST---T----EEEEE-TTS
T ss_pred             cCceeecccceEcCCCCE-------EEEEecCCCCCceEEEEEEeCCCCCe---EeccCCCCC---c----eEEEECCCC
Confidence            55556755 667777663       45555543  35566665543 1111   122211111   1    556899999


Q ss_pred             ceeec
Q 047728          468 RICQK  472 (474)
Q Consensus       468 ~~l~~  472 (474)
                      +.++-
T Consensus       340 ~y~v~  344 (353)
T PF00930_consen  340 KYYVD  344 (353)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            98874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.72  E-value=0.036  Score=50.59  Aligned_cols=224  Identities=14%  Similarity=0.180  Sum_probs=121.5

Q ss_pred             ecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE
Q 047728          156 ISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL  235 (474)
Q Consensus       156 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  235 (474)
                      ..++.|+.|..+| |.++++........                                 ..+...|..+...++-+.|
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---------------------------------i~~~~~I~ql~vl~~~~~l   50 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---------------------------------ILKLSSITQLSVLPELNLL   50 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee---------------------------------EeecceEEEEEEecccCEE
Confidence            3478899999999 88888822211100                                 0133348899999977777


Q ss_pred             EEEECCCcEEEEEcCCcceeeee--------------eecCcceeEEE--ecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728          236 YSASWDKTFKVWRTSDYKCLESV--------------IAHDDAVNSIV--AGFDG-LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       236 ~s~s~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~v~--~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      ++-+ |+.+.++++.........              ......+...+  -...+ ..++......|.+|..........
T Consensus        51 lvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~  129 (275)
T PF00780_consen   51 LVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS  129 (275)
T ss_pred             EEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence            7665 599999998765443311              11123344444  11223 444555556999998875322110


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee------------cceeeEEEEec-CCEE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG------------HKLAILCLVTA-GNLV  365 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~~-~~~l  365 (474)
                        .......-...+..++|.  ++.+++|..++ ..+.|+.++... .+...            ...++..+..+ +.+|
T Consensus       130 --~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L  203 (275)
T PF00780_consen  130 --KLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFL  203 (275)
T ss_pred             --ceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceEE
Confidence              111223334778889988  66777776544 777888754332 12111            11123333333 4555


Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          366 FSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ++-  |..-.+.|... +......+. -......+++...          +|+..+.+ .|.||++.+++
T Consensus       204 l~~--~~~g~fv~~~G-~~~r~~~i~-W~~~p~~~~~~~p----------yli~~~~~-~iEV~~~~~~~  258 (275)
T PF00780_consen  204 LCY--DNIGVFVNKNG-EPSRKSTIQ-WSSAPQSVAYSSP----------YLIAFSSN-SIEVRSLETGE  258 (275)
T ss_pred             EEe--cceEEEEcCCC-CcCcccEEE-cCCchhEEEEECC----------EEEEECCC-EEEEEECcCCc
Confidence            543  33333444433 221111222 1234556666433          66666654 59999999983

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.71  E-value=0.011  Score=54.91  Aligned_cols=227  Identities=15%  Similarity=0.099  Sum_probs=96.0

Q ss_pred             EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEec--CCCeEEEeeC----C-----------------
Q 047728          226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG--FDGLVFTGSA----D-----------------  282 (474)
Q Consensus       226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~~~----d-----------------  282 (474)
                      ..++++.+.++-......|+-.|+++.+....+......+-...|.  .++..+++..    |                 
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~  165 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR  165 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence            4557777777766666789999999987766665555555434443  3343333321    1                 


Q ss_pred             --CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccccceeeeecc---
Q 047728          283 --GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGVLRGHK---  352 (474)
Q Consensus       283 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~---  352 (474)
                        ..|.-.|+.+++       ..........+..+.|+|....+++=+..|     .-++|-+++.......+..+.   
T Consensus       166 p~~~i~~idl~tG~-------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e  238 (386)
T PF14583_consen  166 PHCRIFTIDLKTGE-------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGE  238 (386)
T ss_dssp             --EEEEEEETTT---------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTE
T ss_pred             CCceEEEEECCCCc-------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCc
Confidence              112222333221       233344556778889999554444333322     135565443322112222221   


Q ss_pred             -eeeEEEEecCCEEEEE-----eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--
Q 047728          353 -LAILCLVTAGNLVFSG-----SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK--  424 (474)
Q Consensus       353 -~~v~~~~~~~~~l~sg-----s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--  424 (474)
                       ..---+.++|..|.--     +.+..|.-+|..+++...+...    .+..-+..++|+.        +++-=+.|.  
T Consensus       239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~--------L~vGDG~d~p~  306 (386)
T PF14583_consen  239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGK--------LFVGDGGDAPV  306 (386)
T ss_dssp             EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSS--------EEEEEE-----
T ss_pred             ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCC--------EEEecCCCCCc
Confidence             1112355677655432     2344667778877764333222    2344556667777        444333332  


Q ss_pred             --------------cEEEEEccCCCCCCCCC--cccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          425 --------------SVKMWRVSEQAPPLVST--TQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       425 --------------~i~vw~~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                                    -|.++++..+.......  .....+.+ ...+  ..=||+|||||+.++-.|
T Consensus       307 ~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~-~~q~--~hPhp~FSPDgk~VlF~S  369 (386)
T PF14583_consen  307 DVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDG-DRQV--THPHPSFSPDGKWVLFRS  369 (386)
T ss_dssp             --------------EEEEEETTTTEEEEEEE-------BTT-BSST--T----EE-TTSSEEEEEE
T ss_pred             cccccccceecCCcEEEEeccccCceeeeeeccCcceeecC-CCcc--CCCCCccCCCCCEEEEEC
Confidence                          45566665442110000  00001111 1112  245789999999998654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.70  E-value=0.0023  Score=47.85  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=44.6

Q ss_pred             CEEEEeeCCCcEEEEeCCccccccccCccCEEEEEe-cCCEEEEEeCCCeEEEEecC
Q 047728          121 DLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVI-SNEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~-~~~~l~s~~~dg~i~vwd~~  176 (474)
                      +-|++|++|..||||+-...+..+.... .|+++.. .+.+++.+-.+|+|-+|+-.
T Consensus        16 ~eLlvGs~D~~IRvf~~~e~~~Ei~e~~-~v~~L~~~~~~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGDEIVAEITETD-KVTSLCSLGGGRFAYALANGTVGVYDRS   71 (111)
T ss_pred             ceEEEecCCcEEEEEeCCcEEEEEeccc-ceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence            4899999999999999887777777555 4555555 48899999999999999763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.67  E-value=0.04  Score=49.72  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=96.0

Q ss_pred             CCEEEEEe-----CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728          158 NEKIFSGH-----QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ  232 (474)
Q Consensus       158 ~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  232 (474)
                      +++|++.-     ..|.|-|||...+ ..   ++.                           .|..|--.-..+.+.||+
T Consensus        62 G~~LytTEnd~~~g~G~IgVyd~~~~-~~---ri~---------------------------E~~s~GIGPHel~l~pDG  110 (305)
T PF07433_consen   62 GRLLYTTENDYETGRGVIGVYDAARG-YR---RIG---------------------------EFPSHGIGPHELLLMPDG  110 (305)
T ss_pred             CCEEEEeccccCCCcEEEEEEECcCC-cE---EEe---------------------------EecCCCcChhhEEEcCCC
Confidence            77787764     4578999999832 11   111                           122243344567788888


Q ss_pred             CEEEEEE------------------CCCcEEEEEcCCcceeeeee----ecCcceeEEEecCCCeEEEeeCC-C------
Q 047728          233 NLLYSAS------------------WDKTFKVWRTSDYKCLESVI----AHDDAVNSIVAGFDGLVFTGSAD-G------  283 (474)
Q Consensus       233 ~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~~~~~~~l~~~~~d-g------  283 (474)
                      +.|+++-                  .+-.+.+.|..+|+.+....    .|...+..+++..+|.++.+... |      
T Consensus       111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~  190 (305)
T PF07433_consen  111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAP  190 (305)
T ss_pred             CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccC
Confidence            7777662                  23346667788888887743    37788999999999966555432 2      


Q ss_pred             -cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCccccc
Q 047728          284 -TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSH  344 (474)
Q Consensus       284 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~  344 (474)
                       .|-+++.... .............-...+-+|++++++..+++.+ ..+.+.+||..++..+
T Consensus       191 PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  191 PLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             CeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence             1333332211 0000001111234467899999999998886665 5678999999887654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.67  E-value=0.0095  Score=57.50  Aligned_cols=188  Identities=12%  Similarity=0.065  Sum_probs=100.1

Q ss_pred             EEecCCCCEEEEEECC----------C-cEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728          226 LSMSEDQNLLYSASWD----------K-TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       226 l~~~~~~~~l~s~s~d----------g-~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~  294 (474)
                      ++.+|.|..+|....+          . .|.||+. .|+.+..+.-..+.+.++.|..+..|++...||.+++||+....
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence            3445555555555433          1 4888885 56777776555589999999988888899999999999986221


Q ss_pred             Cceeeeee---eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee-cCccccccee---ee----ec--c--eeeEEEE
Q 047728          295 KGTKHFFS---QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE-RELNLSHGGV---LR----GH--K--LAILCLV  359 (474)
Q Consensus       295 ~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d-~~~~~~~~~~---~~----~~--~--~~v~~~~  359 (474)
                         .....   ......+..+....+..+|-.++  ..++.+.+.. ..........   ..    .+  .  ..+..+.
T Consensus       113 ---~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  113 ---QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             ---eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence               00000   01111112222223333453333  3444444432 2211111000   00    00  0  0112233


Q ss_pred             ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          360 TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       360 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      .+....+....++.+.+.+....+     .+. ..+++..+++||+++        +||.-..+|.+.|....-
T Consensus       188 ~~~~~~i~~~~g~~i~~i~~~~~~-----~i~-~~~~i~~iavSpng~--------~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  188 SDRVVEILLANGETIYIIDENSFK-----QID-SDGPIIKIAVSPNGK--------FIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             cCcceEEEEecCCEEEEEEccccc-----ccc-CCCCeEEEEECCCCC--------EEEEEECCCCEEEEECcc
Confidence            334444444444555534332211     111 246899999999999        888888889988876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.61  E-value=0.018  Score=55.77  Aligned_cols=215  Identities=12%  Similarity=0.072  Sum_probs=100.5

Q ss_pred             EEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEE-ecCCCCcceeeeecccCcc
Q 047728          115 SLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVW-KVSSKDASIHKRVGTLPTF  192 (474)
Q Consensus       115 ~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~  192 (474)
                      +..|+|++++. +.||.-.|+.........   .+.-...+|. .+.+++-...++|.++ ++.... .....       
T Consensus        39 s~npngr~v~V-~g~geY~iyt~~~~r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~-~k~i~-------  106 (443)
T PF04053_consen   39 SHNPNGRFVLV-CGDGEYEIYTALAWRNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV-VKSIK-------  106 (443)
T ss_dssp             EE-TTSSEEEE-EETTEEEEEETTTTEEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T-T-----------
T ss_pred             EECCCCCEEEE-EcCCEEEEEEccCCcccc---cCceeEEEEecCccEEEEECCCeEEEEEcCcccc-ceEEc-------
Confidence            34456888888 457778888732221111   2233345555 5778888888889996 332221 11110       


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF  272 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  272 (474)
                                                ....+..|-.   |.+|...+.+ .|.+||+.+++.+..+...  +|..+.|++
T Consensus       107 --------------------------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~  154 (443)
T PF04053_consen  107 --------------------------LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD  154 (443)
T ss_dssp             ---------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred             --------------------------CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence                                      1112333322   7777776654 7999999999999988643  389999999


Q ss_pred             CC-eEEEeeCCCcEEEEEcccC------CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728          273 DG-LVFTGSADGTVKVWRRELQ------GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG  345 (474)
Q Consensus       273 ~~-~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  345 (474)
                      ++ +++.. .+..+.+++....      ..+... ...........|.+.+|..+  .++-.+.. .++.+  -.+....
T Consensus       155 ~g~~val~-t~~~i~il~~~~~~~~~~~~~g~e~-~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~  227 (443)
T PF04053_consen  155 DGELVALV-TKDSIYILKYNLEAVAAIPEEGVED-AFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGI  227 (443)
T ss_dssp             TSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-GG-GEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEE
T ss_pred             CCCEEEEE-eCCeEEEEEecchhcccccccCchh-ceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcce
Confidence            98 44444 4567788775533      100000 01222222567888888766  33333333 55542  2221110


Q ss_pred             eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          346 GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       346 ~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      -........++...+..+.++....|+.|..+.+.
T Consensus       228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            00112223344445555677777777777766554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.53  E-value=0.12  Score=51.70  Aligned_cols=66  Identities=11%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             CCEEEEeeCCCcEEEEeCC--ccccccccC----ccC-------EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSN----SGL-------VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h----~~~-------V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      +..|+.++.++.|+-.|..  +.+-.+...    ...       -..+++.++.++.++.|+.|.-.|..+++......
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            5666667767777776633  222222110    000       11234557788899999999999999998776544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.0023  Score=60.55  Aligned_cols=142  Identities=16%  Similarity=0.181  Sum_probs=95.4

Q ss_pred             EEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--------eEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728          235 LYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL  306 (474)
Q Consensus       235 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  306 (474)
                      |.++.....|+-.|++.|+.+...+.+.+ |+-+.+.|+.        .-+.|-.+..|.-||.+.+.............
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34555566788899999999999988777 7777788775        34567889999999999665532222222222


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECC
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      .......|.+-..+| +|++|+.+|.|++||. .+......+.+-..+|  +.++.+|++|++.+ +..+.+-++.
T Consensus       428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            233445555555444 6788999999999997 4434434444444444  66677899887665 5566666653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.49  E-value=0.077  Score=48.38  Aligned_cols=246  Identities=13%  Similarity=0.106  Sum_probs=123.5

Q ss_pred             EEcCCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728          117 AAAGDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      ...++.|+.|+++| |.+++.. ........+...|..+..-.  +.|++- .|+.+.+++++.-...........+...
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccc
Confidence            34588999999999 8888862 11111112333388887763  334333 4599999999876543311100000000


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEE--ecCCCCEEEEEECCCcEEEEEcCCc-----ceeeeeeecCccee
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS--MSEDQNLLYSASWDKTFKVWRTSDY-----KCLESVIAHDDAVN  266 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~  266 (474)
                                        ....-......+...+  -...+...+.+....+|.+|.....     +....+.. .+.+.
T Consensus        82 ------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~  142 (275)
T PF00780_consen   82 ------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPS  142 (275)
T ss_pred             ------------------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcE
Confidence                              0000011223344444  1123333344444568998887653     34444433 57788


Q ss_pred             EEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee------eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728          267 SIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ------TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       267 ~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      .++|..+ .++.|.. ....+.|+.+...........      .......++..+... ++.+|++-  |..-.+.|...
T Consensus       143 ~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G  217 (275)
T PF00780_consen  143 SIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNG  217 (275)
T ss_pred             EEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCC
Confidence            9999844 5665554 447778887443311100000      001112233334443 34555543  33333344433


Q ss_pred             ccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC
Q 047728          341 NLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG  392 (474)
Q Consensus       341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  392 (474)
                      .......+. -......+.....+|++...+ .|.||++.+++  .++.+..
T Consensus       218 ~~~r~~~i~-W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~--lvQ~i~~  265 (275)
T PF00780_consen  218 EPSRKSTIQ-WSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGE--LVQTIPL  265 (275)
T ss_pred             CcCcccEEE-cCCchhEEEEECCEEEEECCC-EEEEEECcCCc--EEEEEEC
Confidence            211111221 122344555567788887765 59999999997  3455543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.46  E-value=0.098  Score=48.96  Aligned_cols=187  Identities=12%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             CCEEEEEEC----------CCcEEEEEcCCc----ceeeee--eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC
Q 047728          232 QNLLYSASW----------DKTFKVWRTSDY----KCLESV--IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       232 ~~~l~s~s~----------dg~i~iwd~~~~----~~~~~~--~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      ..+|++|+.          .|.|.++++...    ..+..+  ....++|++++.. ++.+++ +..+.|.+|++.....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~-~~g~~l~v~~l~~~~~  119 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVV-AVGNKLYVYDLDNSKT  119 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEE-EETTEEEEEEEETTSS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEE-eecCEEEEEEccCccc
Confidence            467777652          288999999884    223322  2357899999876 445443 3458999999986551


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc-cccceeee-ecceeeEEEE--ecCCEEEEEeCC
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLR-GHKLAILCLV--TAGNLVFSGSAD  371 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~-~~~~~v~~~~--~~~~~l~sgs~d  371 (474)
                          ............+.++...  ++++++|.....+.++..+.. .......+ .....+++..  .+++.++.+..+
T Consensus       120 ----l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~  193 (321)
T PF03178_consen  120 ----LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD  193 (321)
T ss_dssp             ----EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred             ----chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence                1222223333456666665  559999998888888744332 11211212 2233344443  366799999999


Q ss_pred             CcEEEEECCCC---------ceEEEEeecCCccceEEE---EEeeC--CccccccceEEEEEecCCCcEEEE
Q 047728          372 MSICIWRRKEN---------EHICLSMLTGHSGPVKCL---AVEKD--DESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       372 g~i~iwd~~~~---------~~~~~~~~~~h~~~v~~l---~~~~~--~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      |.+.++.....         .......+. ....|+++   ++.|.  ...  ......++-++.+|.|-+.
T Consensus       194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~--~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  194 GNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSE--SPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS---TTEEEEEEEEETTS-EEEE
T ss_pred             CeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCc--ccccceEEEEecCCEEEEE
Confidence            99999987521         222222332 23457777   44452  110  0012257777789988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.057  Score=51.74  Aligned_cols=195  Identities=18%  Similarity=0.200  Sum_probs=127.2

Q ss_pred             eeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC---CCcEEEEEcccCCCce
Q 047728          223 ISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA---DGTVKVWRRELQGKGT  297 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~---dg~i~iwd~~~~~~~~  297 (474)
                      -..+++++.+..++.. ..++.|.+.|..+.+.......-. ....+++.+++ .+.++..   ++.+.+.|......  
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--  152 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--  152 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--
Confidence            3467788887755544 456899999988877777665433 66788999998 5554444   67788887664432  


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccc-e----eeeecceeeEEEEecCCEEEEEeCC
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHG-G----VLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~-~----~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                          .........+ ..++++|++..+++.. .++.|.++|........ .    ...+.......+.+++++++.....
T Consensus       153 ----~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         153 ----TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             ----EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence                2222222233 8899999999766665 78899999976654331 1    2222333457888899877665544


Q ss_pred             ---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEccCC
Q 047728          372 ---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVSEQ  434 (474)
Q Consensus       372 ---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~~~  434 (474)
                         +.+...|..++.........+-. ....+.+.|++.        .++.. +..+.+.+-|..+.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~--------~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGK--------AAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCC--------EEEEEecCCCeEEEEeCCCC
Confidence               58889998887633221122222 466788999998        55555 34477888777664

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00068  Score=65.25  Aligned_cols=94  Identities=18%  Similarity=0.230  Sum_probs=76.2

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCccee-EEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-SIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      ...|.-+.|+|.-.+||.+..+|.|.+..+. .+.+.++..|...++ +++|.||| .+++|-.||+|++.|.+.+..  
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~--   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR--   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence            3467889999999999999999999999988 788888887777777 99999999 899999999999999987654  


Q ss_pred             eeeeeeeeecccccEEEEEEcC
Q 047728          298 KHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                         .......-...|.++-|.+
T Consensus        97 ---l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 ---LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ---eeccccccccchheeeccc
Confidence               2222333445677777763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.057  Score=49.57  Aligned_cols=217  Identities=11%  Similarity=0.066  Sum_probs=112.6

Q ss_pred             EEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcc-eeeeecccCccceeeeee
Q 047728          122 LLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDAS-IHKRVGTLPTFKDFIKCS  199 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~  199 (474)
                      ++.+--..+.|.-|+.. .....+.........+..+...++.++..| +.+++.+.+... ........          
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~----------  107 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDG----------  107 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCC----------
Confidence            55555566667777654 223333333322333344444344444444 677777554431 11110000          


Q ss_pred             cCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC---------CCcEEEEEcC-CcceeeeeeecCcceeEEE
Q 047728          200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW---------DKTFKVWRTS-DYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~  269 (474)
                                        .-....+.+...|+|.+.++...         -..=.+|.+. .+..+..+..+-..-+.|+
T Consensus       108 ------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla  169 (307)
T COG3386         108 ------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLA  169 (307)
T ss_pred             ------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceE
Confidence                              01134456677777765554333         0111344444 4566666666566678999


Q ss_pred             ecCCC-eEEEe-eCCCcEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-cEEEeecCcccccc
Q 047728          270 AGFDG-LVFTG-SADGTVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-LVNFWERELNLSHG  345 (474)
Q Consensus       270 ~~~~~-~l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~  345 (474)
                      |+||+ .++.+ +..+.|.-|++.. .................+..-.++...+|.+.+++..+| .|.+|+.+ ++...
T Consensus       170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~  248 (307)
T COG3386         170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG  248 (307)
T ss_pred             ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE
Confidence            99999 44444 4458888887762 111111111122223456677788888998886555554 89999988 55554


Q ss_pred             eeeeecceeeEEEEec---CCEEEEEe
Q 047728          346 GVLRGHKLAILCLVTA---GNLVFSGS  369 (474)
Q Consensus       346 ~~~~~~~~~v~~~~~~---~~~l~sgs  369 (474)
                      .+.... ..+.+..+-   .+.|+..+
T Consensus       249 ~i~lP~-~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         249 EIKLPV-KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEECCC-CCCccceEeCCCcCEEEEEe
Confidence            444332 333344332   34444443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.012  Score=56.73  Aligned_cols=191  Identities=13%  Similarity=0.070  Sum_probs=103.1

Q ss_pred             cceeeeeeecCcceeEEEecCCC-eEE-Ee-eCC--CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDG-LVF-TG-SAD--GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      +.....+......+..-.|++++ .++ .. ...  ..+.++|+..+.....       ....+.-..-+|+|||+.|+.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-------~~~~g~~~~P~fspDG~~l~f  254 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-------LNFNGNNGAPAFSPDGSKLAF  254 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-------eccCCccCCccCCCCCCEEEE
Confidence            33344444445566667888888 222 21 222  3588888886654221       113334455689999987765


Q ss_pred             E-cCCCc--EEEeecCcccccceeeee-cceeeEEEEecCCEEEEEe-CCCc--EEEEECCCCceEEEEeecCCccceEE
Q 047728          327 G-SSDGL--VNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGS-ADMS--ICIWRRKENEHICLSMLTGHSGPVKC  399 (474)
Q Consensus       327 ~-~~dg~--i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs-~dg~--i~iwd~~~~~~~~~~~~~~h~~~v~~  399 (474)
                      . ..||.  |.++|+....... +... .....-.++|+|++++-.+ ..|.  |.+++.+..... ..+..+  +.-..
T Consensus       255 ~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~--~~~~~  330 (425)
T COG0823         255 SSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSG--GGNSN  330 (425)
T ss_pred             EECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccC--CCCcC
Confidence            4 45665  6666777665332 2111 1122467888998877655 4454  555566666532 222322  22227


Q ss_pred             EEEeeCCccccccceEEEEEec-CCCc--EEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          400 LAVEKDDESLSREKRWILYSGS-LDKS--VKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       400 l~~~~~~~~~~~~~~~~l~s~s-~Dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      -.|+||+.        +++..+ .+|.  |.+.++.++..       .+.+ .    .+.+.=.|++.+||+.+...
T Consensus       331 p~~SpdG~--------~i~~~~~~~g~~~i~~~~~~~~~~-------~~~l-t----~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         331 PVWSPDGD--------KIVFESSSGGQWDIDKNDLASGGK-------IRIL-T----STYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             ccCCCCCC--------EEEEEeccCCceeeEEeccCCCCc-------EEEc-c----ccccCCCCCcCCCCceEEEe
Confidence            78999998        444444 3455  55555544421       1111 1    12222346888888887654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.12  Score=49.54  Aligned_cols=211  Identities=15%  Similarity=0.132  Sum_probs=135.3

Q ss_pred             CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728          158 NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY  236 (474)
Q Consensus       158 ~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  236 (474)
                      +. ..++...++.|.+.|............+.                                 ....++++++++.++
T Consensus        85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---------------------------------~P~~~~~~~~~~~vY  131 (381)
T COG3391          85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---------------------------------GPVGLAVDPDGKYVY  131 (381)
T ss_pred             CCeEEEecCCCCeEEEEcCcccceeeEeeecc---------------------------------CCceEEECCCCCEEE
Confidence            44 44455556889999966655443322221                                 345789999998888


Q ss_pred             EEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728          237 SASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA  311 (474)
Q Consensus       237 s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (474)
                      .+..   ++++.+.|..+.+.+.....-..+ ..+++.|++ .++ +-..++.|.+.|........  ............
T Consensus       132 V~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~~~~~~  208 (381)
T COG3391         132 VANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLVGVGTG  208 (381)
T ss_pred             EEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccccccCCC
Confidence            7765   689999999999888886554444 889999999 344 44578999999965432210  011112333445


Q ss_pred             EEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeec--ceeeEEEEecCCEEEEEeCC-CcEEEEECCCCceE
Q 047728          312 VTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGH--KLAILCLVTAGNLVFSGSAD-MSICIWRRKENEHI  385 (474)
Q Consensus       312 v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sgs~d-g~i~iwd~~~~~~~  385 (474)
                      ...+.++|++..+++....   +.+...|..+...........  ...-..+.|+|..+.+.... +.+.+-|..+....
T Consensus       209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence            6778999999977766544   488888888765543312211  23447788899988888544 88999998876632


Q ss_pred             EEEeecCC---ccceEEEEEeeCC
Q 047728          386 CLSMLTGH---SGPVKCLAVEKDD  406 (474)
Q Consensus       386 ~~~~~~~h---~~~v~~l~~~~~~  406 (474)
                        ......   ...+..+++.+..
T Consensus       289 --~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         289 --KTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             --eeecccccccccceeccceeec
Confidence              222222   2235566665554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.12  Score=47.59  Aligned_cols=173  Identities=14%  Similarity=0.101  Sum_probs=96.5

Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-----cCcceeEEEecCCCeEEEeeCCC----------cEEE
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-----HDDAVNSIVAGFDGLVFTGSADG----------TVKV  287 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~v~~~~~~~l~~~~~dg----------~i~i  287 (474)
                      +.++..-..+..|+++.  .-+.+++.+++..+..+..     .....+.+.+.|+|.+..++...          .-.+
T Consensus        68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386          68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            34444444455555543  3367777765555333321     12456778889999665555441          1134


Q ss_pred             EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-CcEEEeecCc--ccccc---eeeee-cc--eeeEEE
Q 047728          288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-GLVNFWEREL--NLSHG---GVLRG-HK--LAILCL  358 (474)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i~v~d~~~--~~~~~---~~~~~-~~--~~v~~~  358 (474)
                      |.+.....     .......+-..-+.|+|+||++.|+.+... +.|.-|++..  .....   ..... ..  .--+++
T Consensus       146 yr~~p~g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v  220 (307)
T COG3386         146 YRVDPDGG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV  220 (307)
T ss_pred             EEEcCCCC-----EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence            44432111     122223334456789999999888877654 7788887652  11111   11111 11  112666


Q ss_pred             EecCCEEEEEeCCC-cEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          359 VTAGNLVFSGSADM-SICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       359 ~~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ..+|.+-+++-.+| .|.+|+.+ ++.  +..+.-....+++++|--.
T Consensus       221 DadG~lw~~a~~~g~~v~~~~pd-G~l--~~~i~lP~~~~t~~~FgG~  265 (307)
T COG3386         221 DADGNLWVAAVWGGGRVVRFNPD-GKL--LGEIKLPVKRPTNPAFGGP  265 (307)
T ss_pred             eCCCCEEEecccCCceEEEECCC-CcE--EEEEECCCCCCccceEeCC
Confidence            77788776555554 99999998 663  4444444467888888653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.35  E-value=0.012  Score=56.70  Aligned_cols=159  Identities=18%  Similarity=0.093  Sum_probs=98.0

Q ss_pred             ccCCeeEEEecCCCCEEEEEE---CC-CcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEccc
Q 047728          219 HFDAISSLSMSEDQNLLYSAS---WD-KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~  292 (474)
                      -...+..-+|+|+++.++...   .. ..+.++|+.+++....+. ..+.-..-.|+|||  .+++...||...||-+..
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            334566678888887765442   22 459999999887655543 23344456899999  677778888866664443


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCc--EEEeecCcccccceeeeecceeeEEEEecCCEEEEEe
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGL--VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS  369 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs  369 (474)
                      ....     ...+....+.-+.=.|+|+|+.|+..+. .|.  |.+++.+................-.++++|++++..+
T Consensus       270 ~~~~-----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         270 DGKN-----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             CCCc-----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence            3332     1112233333336689999998876654 444  6666777665433333333344677889999888776


Q ss_pred             C-CCc--EEEEECCCCc
Q 047728          370 A-DMS--ICIWRRKENE  383 (474)
Q Consensus       370 ~-dg~--i~iwd~~~~~  383 (474)
                      . +|.  |.+.|+.++.
T Consensus       345 ~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         345 SSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCceeeEEeccCCCC
Confidence            4 344  6666665554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.34  E-value=0.022  Score=58.40  Aligned_cols=136  Identities=12%  Similarity=0.124  Sum_probs=90.3

Q ss_pred             CCCcEEEEeCC--ccccccccCccC-EEEEEec-------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          128 DSKNIRVWKNQ--REFSGFKSNSGL-VKAIVIS-------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       128 ~dg~v~vwd~~--~~~~~~~~h~~~-V~~i~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      ....|+-.|+.  +.+..+..|... |..++..       +...+.|-.+..+..||.+-........     .      
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-----~------  570 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-----Q------  570 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-----c------
Confidence            34455555643  556666666544 7777653       3456778788889999987532110000     0      


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEE
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF  277 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~  277 (474)
                                      ..........+|++-..+| +||+|+.+|.||+||--..+....+.+-..+|..|..+.||..+
T Consensus       571 ----------------~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwi  633 (794)
T PF08553_consen  571 ----------------SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWI  633 (794)
T ss_pred             ----------------ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEE
Confidence                            0011244567788877665 89999999999999954333344556778999999999999666


Q ss_pred             EeeCCCcEEEEEcc
Q 047728          278 TGSADGTVKVWRRE  291 (474)
Q Consensus       278 ~~~~dg~i~iwd~~  291 (474)
                      .+..+..|.+++..
T Consensus       634 laTc~tyLlLi~t~  647 (794)
T PF08553_consen  634 LATCKTYLLLIDTL  647 (794)
T ss_pred             EEeecceEEEEEEe
Confidence            67778888888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.32  E-value=0.22  Score=49.85  Aligned_cols=175  Identities=11%  Similarity=0.062  Sum_probs=88.9

Q ss_pred             EEcCCEEEEeeCCCcEEEEeCC--cccccccc--Cc--cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCccee
Q 047728          117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKS--NS--GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDASIH  183 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~--h~--~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~  183 (474)
                      +..+..++.++.|+.|.-.|..  +.+-....  +.  ..+. .-...++.++.+..      +|.|.-+|.++++.+..
T Consensus       117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            3445667777778888777732  33222211  11  1121 11223566666643      68999999999987765


Q ss_pred             eeecccCccceeeeee-c--CCCCeEEEeeeccceeeeccCCee-EEEecCCCCEEEEEECC-----C-----------c
Q 047728          184 KRVGTLPTFKDFIKCS-M--KPSNYIEVRRHRNGLWIKHFDAIS-SLSMSEDQNLLYSASWD-----K-----------T  243 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~d-----g-----------~  243 (474)
                      ........  ...... .  ........+.  ...+..-...++ .+++.+...+++.+..+     +           .
T Consensus       197 ~~~~p~~~--~~~~~~~~~~~~~~~~~tw~--~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s  272 (527)
T TIGR03075       197 RYTVPGDM--GYLDKADKPVGGEPGAKTWP--GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSS  272 (527)
T ss_pred             ccCcCCCc--ccccccccccccccccCCCC--CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcccee
Confidence            44321110  000000 0  0000000000  001111112222 34666666666665521     2           5


Q ss_pred             EEEEEcCCcceeeeeeecCccee---------EEEecCCC----eEEEeeCCCcEEEEEcccCCC
Q 047728          244 FKVWRTSDYKCLESVIAHDDAVN---------SIVAGFDG----LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~~~~~~v~---------~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      |.-.|+++|+..-.++.....++         -+....++    .++.+..+|.+.+.|.++++.
T Consensus       273 ~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       273 IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            77889999998877765322222         12222344    577899999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.32  E-value=0.067  Score=51.89  Aligned_cols=185  Identities=14%  Similarity=0.090  Sum_probs=88.4

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      +.-...+|.+. +.+|+-....+|.|+.--+.+....+.. ...+..|..   |.++....++.|.+||+.+...     
T Consensus        69 G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~-----  138 (443)
T PF04053_consen   69 GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKL-----  138 (443)
T ss_dssp             EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--E-----
T ss_pred             CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcce-----
Confidence            34557888884 4577777788999974323333233332 223444433   6444444555899999986542     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---------cc-cceeeeecceeeEEEEecCCEEEEEeC
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN---------LS-HGGVLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                       .....  -.+|..+.|++++.+++..+.+ .+.+++.+..         .. .......-...|.+..|+++.++-.+.
T Consensus       139 -i~~i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~  214 (443)
T PF04053_consen  139 -IRRID--VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTS  214 (443)
T ss_dssp             -EEEES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-T
T ss_pred             -eeEEe--cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcC
Confidence             22222  2238999999999999988765 5666654322         00 111222213455555666664444443


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      . .|+.  +-+++...+..+   ..++.=+...++..        .++....|+.|..+.+..
T Consensus       215 ~-~lkY--l~~Ge~~~i~~l---d~~~yllgy~~~~~--------~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  215 N-HLKY--LVNGETGIIAHL---DKPLYLLGYLPKEN--------RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             T-EEEE--EETTEEEEEEE----SS--EEEEEETTTT--------EEEEE-TT--EEEEE--H
T ss_pred             C-eEEE--EEcCCcceEEEc---CCceEEEEEEccCC--------EEEEEECCCCEEEEEECH
Confidence            3 5555  344543223332   35677777777655        688888899998887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.25  E-value=0.00073  Score=39.79  Aligned_cols=37  Identities=41%  Similarity=0.703  Sum_probs=32.4

Q ss_pred             EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +...+..|...|.++.|.+++.        ++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK--------YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC--------EEEEecCCCeEEEcC
Confidence            3456678889999999999887        899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.05  E-value=0.0019  Score=37.89  Aligned_cols=38  Identities=32%  Similarity=0.554  Sum_probs=32.6

Q ss_pred             cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR  289 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd  289 (474)
                      ++++..+..|...|.++.+.+++ .+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566777888999999999887 899999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.95  E-value=0.3  Score=44.80  Aligned_cols=151  Identities=13%  Similarity=0.092  Sum_probs=88.2

Q ss_pred             CEEEEEECCCcEEEEEcC-Ccceeeeee----ecCcce-eEEEecCC-CeEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728          233 NLLYSASWDKTFKVWRTS-DYKCLESVI----AHDDAV-NSIVAGFD-GLVFTGSADGTVKVWRRELQGKGTKHFFSQTL  305 (474)
Q Consensus       233 ~~l~s~s~dg~i~iwd~~-~~~~~~~~~----~~~~~v-~~v~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (474)
                      ..+.+-|.||.+.-..+. .|+......    ...+++ ..-++... +.++--+.+|.|+--|+........  ..-.+
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~--~~~~~  225 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG--KPWSL  225 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE--EEEES
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc--Ccccc
Confidence            457788889999888887 455542221    111222 12233333 3566678899999888875432111  11111


Q ss_pred             ec--------ccccEEEEEEcCCCCEEEEEcC--------CC--cEEEeecCcccccceeeeecceeeEEEEecCC-EEE
Q 047728          306 LK--------QECAVTALAISPDAAIVYCGSS--------DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVF  366 (474)
Q Consensus       306 ~~--------~~~~v~~l~~~~~~~~l~~~~~--------dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~  366 (474)
                      ..        ..+.-.-+++++..+.|++--.        |+  .|.+||+.+.+.+.++...+....+.++.+.+ +|+
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~  305 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY  305 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred             cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence            00        1233445788876666655321        11  47888999998887777777766677777654 665


Q ss_pred             EEe-CCCcEEEEECCCCceE
Q 047728          367 SGS-ADMSICIWRRKENEHI  385 (474)
Q Consensus       367 sgs-~dg~i~iwd~~~~~~~  385 (474)
                      +.+ .++.+.+||..+++..
T Consensus       306 ~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  306 ALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEETTTTEEEEEETTT--EE
T ss_pred             EEcCCCCeEEEEeCcCCcEE
Confidence            544 5799999999999843

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0044  Score=59.92  Aligned_cols=93  Identities=19%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE-EEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          262 DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       262 ~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      ...+.-+.|+|.- .+|.+..+|.|.+..+.-+ +      .-....+...++ +++|.|||+.|++|-.||+|++.|.+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-R------lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-R------LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccc-e------eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            3457778899987 8999999999988877622 1      233333445555 99999999999999999999999999


Q ss_pred             cccccceeeeecceeeEEEEec
Q 047728          340 LNLSHGGVLRGHKLAILCLVTA  361 (474)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~~~~~  361 (474)
                      ++..+......-...+.+..++
T Consensus        93 ~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   93 KGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCCceeccccccccchheeecc
Confidence            8877655433344445555444

>PHA02713 hypothetical protein; Provisional

Probab=96.93  E-value=0.046  Score=55.16  Aligned_cols=188  Identities=10%  Similarity=0.080  Sum_probs=97.3

Q ss_pred             CCCEEEEEECC------CcEEEEEcCCcceee--eeeecCcceeEEEecCCCeEEEeeCCC-----cEEEEEcccCCCce
Q 047728          231 DQNLLYSASWD------KTFKVWRTSDYKCLE--SVIAHDDAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQGKGT  297 (474)
Q Consensus       231 ~~~~l~s~s~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~  297 (474)
                      ++..++.|+.+      ..+..||..+..-..  .+...... .+++...+...+.|+.++     .+..||.....   
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~---  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK---  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCCe---
Confidence            55666777653      347778877654321  11111111 123333233667777654     37788876432   


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----------------------cEEEeecCcccccc-eeeeecce
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----------------------LVNFWERELNLSHG-GVLRGHKL  353 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----------------------~i~v~d~~~~~~~~-~~~~~~~~  353 (474)
                       ................+++  ++.+.+.|+.++                       .+..||.++..-.. ........
T Consensus       379 -W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~  455 (557)
T PHA02713        379 -WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI  455 (557)
T ss_pred             -EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence             1111111111111222222  577777777653                       46778877653211 11111111


Q ss_pred             eeEEEEecCCEEEEEeCC------CcEEEEECCC-CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--
Q 047728          354 AILCLVTAGNLVFSGSAD------MSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK--  424 (474)
Q Consensus       354 ~v~~~~~~~~~l~sgs~d------g~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--  424 (474)
                      .......++++.+.|+.+      ..+..||..+ .+...+..+.........+.+  ++.        +.+.||.|+  
T Consensus       456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~--------iyv~Gg~~~~~  525 (557)
T PHA02713        456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT--------IMMLHCYESYM  525 (557)
T ss_pred             cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE--------EEEEeeeccee
Confidence            222334567777777654      2467899988 676655555544433333333  455        888999888  


Q ss_pred             cEEEEEccCCC
Q 047728          425 SVKMWRVSEQA  435 (474)
Q Consensus       425 ~i~vw~~~~~~  435 (474)
                      ++..||..+.+
T Consensus       526 ~~e~yd~~~~~  536 (557)
T PHA02713        526 LQDTFNVYTYE  536 (557)
T ss_pred             ehhhcCccccc
Confidence            67777777653

>PHA02713 hypothetical protein; Provisional

Probab=96.86  E-value=0.088  Score=53.17  Aligned_cols=66  Identities=6%  Similarity=-0.052  Sum_probs=41.6

Q ss_pred             CCCEEEEEcCC------CcEEEeecCc-c-cccceeeeecceeeEEEEecCCEEEEEeCCC--cEEEEECCCCceE
Q 047728          320 DAAIVYCGSSD------GLVNFWEREL-N-LSHGGVLRGHKLAILCLVTAGNLVFSGSADM--SICIWRRKENEHI  385 (474)
Q Consensus       320 ~~~~l~~~~~d------g~i~v~d~~~-~-~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~  385 (474)
                      ++++.+.|+.+      ..+..||.++ . ......+.......-....++.+.++|+.|+  .+..||..+.++.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccccccc
Confidence            46666777654      2467899886 3 2222222223333344455788899999888  7888888887754

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.85  E-value=0.42  Score=44.83  Aligned_cols=107  Identities=16%  Similarity=0.133  Sum_probs=55.9

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcce---eeee----eecCcceeEEEecCC----CeEEEeeC-------CC
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC---LESV----IAHDDAVNSIVAGFD----GLVFTGSA-------DG  283 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~v~~~~~----~~l~~~~~-------dg  283 (474)
                      ..+.|+|.|++++++ +...|.|++++ ..+..   +..+    .........++++|+    +.|.+...       ..
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999987666 46699999999 44443   2222    123456788999995    43333322       12


Q ss_pred             --cEEEEEcccCCC--ceeeeeeeeee---cccccEEEEEEcCCCCEEEEEcCC
Q 047728          284 --TVKVWRRELQGK--GTKHFFSQTLL---KQECAVTALAISPDAAIVYCGSSD  330 (474)
Q Consensus       284 --~i~iwd~~~~~~--~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~d  330 (474)
                        .|.-|.......  .....+.....   .....-..|+|.|++.+.++.+..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence              233333332211  11111222222   234456779999999766665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.84  E-value=0.31  Score=43.18  Aligned_cols=200  Identities=9%  Similarity=0.054  Sum_probs=99.7

Q ss_pred             ccCccCEEEEEecC--C-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          145 KSNSGLVKAIVISN--E-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       145 ~~h~~~V~~i~~~~--~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      .+-...+..|.|++  + .+++....+.|...+.+ ++.+....+.                               -.+
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-------------------------------g~~   65 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-------------------------------GFG   65 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-------------------------------S-S
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-------------------------------CCC
Confidence            34444588999972  3 55666677777766654 3433222211                               123


Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc------eeeeee-----ecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK------CLESVI-----AHDDAVNSIVAGFDG-LVFTGSADGTVKVWR  289 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~-----~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd  289 (474)
                      -.-.|++..++.++++--.++.+.++++....      ....+.     .+...+-.++|.+.+ .|+++-...-..+|.
T Consensus        66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~  145 (248)
T PF06977_consen   66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE  145 (248)
T ss_dssp             SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence            46678887777666655568999999883321      111121     234568899999986 777777777777887


Q ss_pred             cccC--CCceeeeeeee---eecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeee---------ccee
Q 047728          290 RELQ--GKGTKHFFSQT---LLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRG---------HKLA  354 (474)
Q Consensus       290 ~~~~--~~~~~~~~~~~---~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---------~~~~  354 (474)
                      +...  ...........   .......+.+++++|. +.+++.......|..+|......-...+..         .+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpE  225 (248)
T PF06977_consen  146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPE  225 (248)
T ss_dssp             EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEE
T ss_pred             EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCcc
Confidence            7641  11110000001   1123345889999995 556666777788888885433211111111         1234


Q ss_pred             eEEEEecCCEEEEEeCCCcEEEE
Q 047728          355 ILCLVTAGNLVFSGSADMSICIW  377 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~dg~i~iw  377 (474)
                      -+++.++|++.++. +-+..++|
T Consensus       226 GIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  226 GIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEEE-TT--EEEEE-TTTEEEEE
T ss_pred             EEEECCCCCEEEEc-CCceEEEe
Confidence            47777777554444 44444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.007  Score=62.19  Aligned_cols=111  Identities=18%  Similarity=0.328  Sum_probs=81.5

Q ss_pred             ccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728          148 SGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS  227 (474)
Q Consensus       148 ~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  227 (474)
                      .+.+.+.+.-+..++.|+..|.+-..|+...-......                               ..-..+|++++
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n-------------------------------e~v~~~Vtsva  137 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQN-------------------------------ERVQGPVTSVA  137 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcC-------------------------------CccCCcceeeE
Confidence            44455556667788888888888888876642211100                               01457899999


Q ss_pred             ecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE---ecCCC-eEEEeeCCCcEEEEEcc
Q 047728          228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV---AGFDG-LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       228 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~---~~~~~-~l~~~~~dg~i~iwd~~  291 (474)
                      |+.+|.+++.|-.+|.|.+||+..++.++.+..|..+.+.+-   +..++ .++++...|.  +|.+.
T Consensus       138 fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  138 FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            999999999999999999999999999999988877766654   33344 7888888886  56543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.66  E-value=0.16  Score=51.21  Aligned_cols=191  Identities=14%  Similarity=0.186  Sum_probs=100.7

Q ss_pred             EEEecCCCCEEEEEECC------CcEEEEEcCCcceeeeeeecCcc-eeEEEecCCC-eEEEeeCCCc-----EEEEEcc
Q 047728          225 SLSMSEDQNLLYSASWD------KTFKVWRTSDYKCLESVIAHDDA-VNSIVAGFDG-LVFTGSADGT-----VKVWRRE  291 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~~-~l~~~~~dg~-----i~iwd~~  291 (474)
                      ++++. ++...++|+.|      .++..||..+.+-...-.-.... -.+++.. +| ..++|+.||.     +-.||.+
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCC
Confidence            34443 45677888888      35677887766533211111111 1122222 45 7888998875     6667765


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEE-cCCCCEEEEEcCCC------cEEEeecCcccccce-eeeecceeeEEEEecCC
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAI-SPDAAIVYCGSSDG------LVNFWERELNLSHGG-VLRGHKLAILCLVTAGN  363 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~~~dg------~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~  363 (474)
                      ...=    ........   ....... .-++.+.++|+.++      .+..||..++..... ....-....-....++.
T Consensus       405 ~~~W----~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~  477 (571)
T KOG4441|consen  405 TNKW----TPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGK  477 (571)
T ss_pred             CCcc----cccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCE
Confidence            4321    11111111   1111211 22677778887554      467788776632211 11111111223445677


Q ss_pred             EEEEEeCCCc-----EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC-----cEEEEEccC
Q 047728          364 LVFSGSADMS-----ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK-----SVKMWRVSE  433 (474)
Q Consensus       364 ~l~sgs~dg~-----i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg-----~i~vw~~~~  433 (474)
                      +.+.|+.|+.     |..||..+.+...+..+......+-.+.+  ++.        +.+.|+.||     +|..||..+
T Consensus       478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~--------ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK--------LYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE--------EEEEecccCccccceeEEcCCCC
Confidence            8888887763     78899998887655444433333333333  333        778888886     466666555


Q ss_pred             C
Q 047728          434 Q  434 (474)
Q Consensus       434 ~  434 (474)
                      .
T Consensus       548 d  548 (571)
T KOG4441|consen  548 D  548 (571)
T ss_pred             C
Confidence            4

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.62  E-value=0.0069  Score=51.27  Aligned_cols=137  Identities=18%  Similarity=0.203  Sum_probs=80.8

Q ss_pred             EEEeeCCCcEEEEeCCcccccc---ccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728          123 LYTGSDSKNIRVWKNQREFSGF---KSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS  199 (474)
Q Consensus       123 l~tgs~dg~v~vwd~~~~~~~~---~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  199 (474)
                      |..-+.||.|+-++..+.....   ..|... ..+.--+..++.|+.+|.|.+|............              
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~--------------   97 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV--------------   97 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhh--------------
Confidence            4445668888888755322211   112222 3333337789999999999999987332211000              


Q ss_pred             cCCCCeEEEeeeccceeeeccCCeeEE-EecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEec-CCCeE
Q 047728          200 MKPSNYIEVRRHRNGLWIKHFDAISSL-SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAG-FDGLV  276 (474)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~-~~~~l  276 (474)
                                       ..-...|.++ .--.++.+..+++.|+.|+.|++.-.+.+.....|. .++...... .+..+
T Consensus        98 -----------------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i  160 (238)
T KOG2444|consen   98 -----------------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFL  160 (238)
T ss_pred             -----------------hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceE
Confidence                             0011222222 222355688899999999999999888877777776 344333333 33355


Q ss_pred             EEe--eCCCcEEEEEcc
Q 047728          277 FTG--SADGTVKVWRRE  291 (474)
Q Consensus       277 ~~~--~~dg~i~iwd~~  291 (474)
                      ..+  +.|..++.|++.
T Consensus       161 ~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  161 KIADTSHDRVLKKWNVE  177 (238)
T ss_pred             Eeeccccchhhhhcchh
Confidence            555  667777777765

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.48  E-value=0.54  Score=47.61  Aligned_cols=149  Identities=13%  Similarity=0.104  Sum_probs=77.0

Q ss_pred             eeEEEecCCCCEEEEEECC------------CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728          223 ISSLSMSEDQNLLYSASWD------------KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR  289 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd  289 (474)
                      .+.-.|+|+|+.|++....            +.+.+.++..++...   .....|..+.|+||| .++... +|.|.+=-
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence            6677889988877766532            233333443333322   235679999999999 444433 57777633


Q ss_pred             cccCCCce-eeeeeeee-ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEE
Q 047728          290 RELQGKGT-KHFFSQTL-LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLV  365 (474)
Q Consensus       290 ~~~~~~~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l  365 (474)
                      +.....+. .......+ ......+..+.|..++.++ ++..++...+|.+.-.-.....+..  ....+.++......+
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~i  553 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTV  553 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceE
Confidence            32222221 11111112 2233446889999998855 5555554445543222111111111  234455565554556


Q ss_pred             EEEeCCCcEEE
Q 047728          366 FSGSADMSICI  376 (474)
Q Consensus       366 ~sgs~dg~i~i  376 (474)
                      +....++.+.+
T Consensus       554 yv~~~~g~~~l  564 (591)
T PRK13616        554 YVTDARAVLQL  564 (591)
T ss_pred             EEEcCCceEEe
Confidence            66666664443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.46  E-value=0.058  Score=51.48  Aligned_cols=109  Identities=12%  Similarity=0.158  Sum_probs=74.8

Q ss_pred             eeEEEecCCCC-------EEEEEECCCcEEEEEcCCcc--eeeeeeec----CcceeEEEecCCCeEEEeeCCCcEEEEE
Q 047728          223 ISSLSMSEDQN-------LLYSASWDKTFKVWRTSDYK--CLESVIAH----DDAVNSIVAGFDGLVFTGSADGTVKVWR  289 (474)
Q Consensus       223 V~~l~~~~~~~-------~l~s~s~dg~i~iwd~~~~~--~~~~~~~~----~~~v~~v~~~~~~~l~~~~~dg~i~iwd  289 (474)
                      |+-+.+.|+.+       .-+.|-.|..|.-||.+-..  .+.....|    .....|.+-..+|.+++|+.+|.||+||
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYd  457 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYD  457 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeeh
Confidence            55556666432       22346678889999987322  22222232    3456778888888999999999999999


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                      .- +..     ....+.+...+|..+..+.+|++|++.+ +..+.+.++
T Consensus       458 ri-~~~-----AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  458 RI-GRR-----AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             hh-hhh-----hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            63 222     3456677888999999999999998654 456666653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.46  E-value=0.9  Score=43.64  Aligned_cols=277  Identities=10%  Similarity=0.055  Sum_probs=135.9

Q ss_pred             CCEEEEeeCCCcEEEEeCCcccc------ccccCccCEEEEEec------CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          120 GDLLYTGSDSKNIRVWKNQREFS------GFKSNSGLVKAIVIS------NEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~~~------~~~~h~~~V~~i~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      .+.|++|+.+|.++||+......      .-..-..+|..+...      ++..++.=.-..+.||.+.......     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~-----  111 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV-----  111 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc-----
Confidence            46999999999999998532111      111234677777653      2234444556678888873322110     


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC----C-CCEEEEEECCCcEEEEEcCCcceeeeeeecC
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE----D-QNLLYSASWDKTFKVWRTSDYKCLESVIAHD  262 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  262 (474)
                                   .......+...-...+.   .....+++-|    . ..+|++-+.||.+.+++-+.......+.. -
T Consensus       112 -------------~~g~~~~L~~~yeh~l~---~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen  112 -------------EHGNQYQLELIYEHSLQ---RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             -------------ccCcEEEEEEEEEEecc---cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence                         00011111111111111   1122233222    2 36788889999999999665443333332 1


Q ss_pred             cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc----------------eeeeeeeeeecccccEEEEE---EcCCCC
Q 047728          263 DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG----------------TKHFFSQTLLKQECAVTALA---ISPDAA  322 (474)
Q Consensus       263 ~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~----------------~~~~~~~~~~~~~~~v~~l~---~~~~~~  322 (474)
                      --.-.+.+.+.. .+++++.+..|..|....-...                .+.........-...+..+.   ++....
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~  254 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES  254 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence            122234555554 8899999999999875321110                00001111111223333333   332333


Q ss_pred             EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE---e----cC---CEEEEEeCCCcEEEEECCCCceEEEEeecC
Q 047728          323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV---T----AG---NLVFSGSADMSICIWRRKENEHICLSMLTG  392 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~---~----~~---~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  392 (474)
                      .+++-++ ..+.+.+..........+   .....|+.   .    .+   ..++.++.++.+.||.-.+-.    ..-..
T Consensus       255 ~IvvLge-r~Lf~l~~~G~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~----WsA~l  326 (418)
T PF14727_consen  255 DIVVLGE-RSLFCLKDNGSLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV----WSAQL  326 (418)
T ss_pred             eEEEEec-ceEEEEcCCCeEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE----EecCC
Confidence            3333322 345555443221111112   22222222   1    22   258889999999999644322    22222


Q ss_pred             CccceEEEEEee--CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          393 HSGPVKCLAVEK--DDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       393 h~~~v~~l~~~~--~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ...+| ++....  +-+.       +|++-+.+|.+.+-=+.+.
T Consensus       327 ~~~PV-al~v~~~~~~~G-------~IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  327 PHVPV-ALSVANFNGLKG-------LIVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             CCCCE-EEEecccCCCCc-------eEEEEcCCCcEEEEEeCCC
Confidence            22233 333322  2122       7999999999999877665

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.45  E-value=0.5  Score=40.53  Aligned_cols=49  Identities=10%  Similarity=0.053  Sum_probs=39.3

Q ss_pred             EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          356 LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       356 ~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      +++..+|++.++.-..++|...|..+++.  +..+.--...|++++|--.+
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~--L~eiklPt~qitsccFgGkn  265 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKI--LLEIKLPTPQITSCCFGGKN  265 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcE--EEEEEcCCCceEEEEecCCC
Confidence            55566889999999999999999999984  44555557889999997553

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.42  E-value=0.54  Score=47.55  Aligned_cols=227  Identities=16%  Similarity=0.220  Sum_probs=112.9

Q ss_pred             CCEEEEeeCCC------cEEEEeCCcc----ccccccCccCEEEEEecCCEEEEEeCC-C-----eEEEEecCCCCccee
Q 047728          120 GDLLYTGSDSK------NIRVWKNQRE----FSGFKSNSGLVKAIVISNEKIFSGHQD-G-----KIRVWKVSSKDASIH  183 (474)
Q Consensus       120 ~~~l~tgs~dg------~v~vwd~~~~----~~~~~~h~~~V~~i~~~~~~l~s~~~d-g-----~i~vwd~~~~~~~~~  183 (474)
                      +.+++.|+.++      .|..+|....    ...+......+..+...+...++|+.| |     ++..||....+... 
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence            55677777763      4667774432    222222222333334446677888888 3     45666666655322 


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc-----EEEEEcCCcceeeee
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT-----FKVWRTSDYKCLESV  258 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~  258 (474)
                        ...+...                         .+.-.+..    -+|.+.++|+.||.     |-.||..+.+--..-
T Consensus       364 --~a~M~~~-------------------------R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va  412 (571)
T KOG4441|consen  364 --VAPMNTK-------------------------RSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA  412 (571)
T ss_pred             --cCCccCc-------------------------cccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccC
Confidence              1111100                         01111111    16778888888864     666776654322111


Q ss_pred             eecC-cceeEEEecCCC-eEEEeeCCC------cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728          259 IAHD-DAVNSIVAGFDG-LVFTGSADG------TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD  330 (474)
Q Consensus       259 ~~~~-~~v~~v~~~~~~-~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  330 (474)
                      .... ..-.+++. -++ ..++|+.++      .+..||..+..=    .............. ++ .-++.+.++|+.|
T Consensus       413 ~m~~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~  485 (571)
T KOG4441|consen  413 PMLTRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFD  485 (571)
T ss_pred             CCCcceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccce-EE-EECCEEEEECCcc
Confidence            1111 11112222 245 677777554      466777654321    11111111111122 22 2257778888877


Q ss_pred             Cc-----EEEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCC-----cEEEEECCCCceE
Q 047728          331 GL-----VNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADM-----SICIWRRKENEHI  385 (474)
Q Consensus       331 g~-----i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg-----~i~iwd~~~~~~~  385 (474)
                      +.     |..||.++....... .......+-+...++...++|+.||     +|..||..+.++.
T Consensus       486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             CCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence            63     677888766433221 2223333344455677888888774     4667777766644

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.42  E-value=0.012  Score=36.79  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      ....|.+++|+|..++||.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999999999999999999998 5544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.41  E-value=0.75  Score=42.14  Aligned_cols=155  Identities=12%  Similarity=0.076  Sum_probs=73.9

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      -...+..+..++++++++++..-..+.-||--...-...-..-...|..+.|.+++.|......|.|+.=+.....  ..
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~  220 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ET  220 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cc
Confidence            3456888888999998888766555567774322222222234678999999999966556688888887621111  00


Q ss_pred             ee-eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--ecceeeEEEEe-cCCEEEEEeCCCcE
Q 047728          299 HF-FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--GHKLAILCLVT-AGNLVFSGSADMSI  374 (474)
Q Consensus       299 ~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~-~~~~l~sgs~dg~i  374 (474)
                      .. .........-.+..++|.+++...++|+.. .+. ...+.++.-.+...  .-......+.+ +.+.-++-+.+|.|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~l  298 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVL  298 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT--EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEE
Confidence            00 011122234458999999998888877654 332 23333322222211  11222333332 34555566678877


Q ss_pred             EEE
Q 047728          375 CIW  377 (474)
Q Consensus       375 ~iw  377 (474)
                      .-|
T Consensus       299 l~~  301 (302)
T PF14870_consen  299 LRY  301 (302)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.37  E-value=0.82  Score=47.73  Aligned_cols=216  Identities=9%  Similarity=0.023  Sum_probs=111.9

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE-E--EecCCCCE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS-L--SMSEDQNL  234 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l--~~~~~~~~  234 (474)
                      ++.|+.++.++.|.-.|..+++.............. ...          ...+....+......... +  .-...+..
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~~~----------~~cRGvay~~~p~~~~~~~~~~~p~~~~~r  262 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-RQH----------QTCRGVSYYDAPAAAAGPAAPAAPADCARR  262 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-ccc----------ccccceEEecCCcccccccccccccccCCE
Confidence            777888888888888888888776655433211000 000          000000000000000000 0  00113568


Q ss_pred             EEEEECCCcEEEEEcCCcceeeeeeecCccee-------------EEEec---CCCeEEEeeC----------CCcEEEE
Q 047728          235 LYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-------------SIVAG---FDGLVFTGSA----------DGTVKVW  288 (474)
Q Consensus       235 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~v~~~---~~~~l~~~~~----------dg~i~iw  288 (474)
                      ++.++.|+.|.-.|.++|+.+..+.. .+.|.             .+.-.   -++.+++|+.          +|.|+-+
T Consensus       263 V~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       263 IILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            88899999999999999998876532 11110             01111   1346666643          6889999


Q ss_pred             EcccCCCceeeeeee-----------eeecccccE-EEEEEcCCCCEEEEEcC------------------CCcEEEeec
Q 047728          289 RRELQGKGTKHFFSQ-----------TLLKQECAV-TALAISPDAAIVYCGSS------------------DGLVNFWER  338 (474)
Q Consensus       289 d~~~~~~~~~~~~~~-----------~~~~~~~~v-~~l~~~~~~~~l~~~~~------------------dg~i~v~d~  338 (474)
                      |.++++.........           ........+ ..++++++..+++.+..                  .+.|.-.|.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            988766433222100           000011111 34566666555555332                  234445566


Q ss_pred             Ccccccceeeeec-c---------eeeEEEEe-cCC---EEEEEeCCCcEEEEECCCCceE
Q 047728          339 ELNLSHGGVLRGH-K---------LAILCLVT-AGN---LVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       339 ~~~~~~~~~~~~~-~---------~~v~~~~~-~~~---~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      ++++..-.....| .         .....+.. +|+   .++.++.+|.+.++|.++++.+
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            6665443332212 1         11233433 453   8999999999999999998743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.32  E-value=0.021  Score=57.66  Aligned_cols=173  Identities=13%  Similarity=0.214  Sum_probs=101.4

Q ss_pred             eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCC-CceeeeeeeeeecccccEEEEEEcC---CCCEEEEEcCCC
Q 047728          258 VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQG-KGTKHFFSQTLLKQECAVTALAISP---DAAIVYCGSSDG  331 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg  331 (474)
                      +++..+.|-.+.|....  .+.  -.-|.+.|||+..-. +................+.-+.|.|   +.-++.++..++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            34555666666665433  222  344678889876422 1122222333334445556667766   667777788888


Q ss_pred             cEEEeecCcccccceeeeeccee-------------eEEEEecCCEEEEEeCCCcEEEEECCC-C--ceEEEEeecCCc-
Q 047728          332 LVNFWERELNLSHGGVLRGHKLA-------------ILCLVTAGNLVFSGSADMSICIWRRKE-N--EHICLSMLTGHS-  394 (474)
Q Consensus       332 ~i~v~d~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~sgs~dg~i~iwd~~~-~--~~~~~~~~~~h~-  394 (474)
                      .|++....+...  .++++|...             +-.+++||..++.+..||.+++|.+.- +  ...|+..++.|+ 
T Consensus       206 ~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  206 EIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             ceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            888866554322  344445433             245789999999999999999997741 1  233566777787 


Q ss_pred             cceEEEEEeeCCccccccceEE-EEEec-CCCcEEEEEccCC
Q 047728          395 GPVKCLAVEKDDESLSREKRWI-LYSGS-LDKSVKMWRVSEQ  434 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~-l~s~s-~Dg~i~vw~~~~~  434 (474)
                      .+-.|.-++.+.......+.|. +++++ ...-+++|.-...
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w  325 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW  325 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence            4444444444333233334443 34443 3456999987665

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.20  E-value=0.13  Score=43.89  Aligned_cols=122  Identities=11%  Similarity=0.122  Sum_probs=76.4

Q ss_pred             CcEEEEeCCccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEe--cCCCCcceeeeecccCccceeeeeecCCCC
Q 047728          130 KNIRVWKNQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWK--VSSKDASIHKRVGTLPTFKDFIKCSMKPSN  204 (474)
Q Consensus       130 g~v~vwd~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (474)
                      |.++.|-....+......-+--+.++|+   ..+.++-+.+-+|.-||  ..++.......+-.                
T Consensus       139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d----------------  202 (310)
T KOG4499|consen  139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD----------------  202 (310)
T ss_pred             cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEE----------------
Confidence            4455555444444444444445667787   23566677788888888  55555432222111                


Q ss_pred             eEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728          205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG  274 (474)
Q Consensus       205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  274 (474)
                         ++....  +  ....--.+++..+|++.+++-..++|...|..+|+.+..++-....|++++|.-.+
T Consensus       203 ---lrk~~~--~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn  265 (310)
T KOG4499|consen  203 ---LRKSQP--F--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN  265 (310)
T ss_pred             ---eccCCC--c--CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence               111000  0  11112234456688888888888999999999999999999999999999998765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.18  E-value=1.2  Score=42.26  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=65.6

Q ss_pred             CcceeEEEecCCCe-EEEe--eCCC---cEEEEEcccCCCceeeeeeeeeecccccEEEEEEc-CCC-CEEEEEcCCCcE
Q 047728          262 DDAVNSIVAGFDGL-VFTG--SADG---TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS-PDA-AIVYCGSSDGLV  333 (474)
Q Consensus       262 ~~~v~~v~~~~~~~-l~~~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~-~~l~~~~~dg~i  333 (474)
                      ...+..+.|.+++. ++..  ..+.   .+.++|...+..  .........+--.......+. +++ .+|.....+|.-
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~--~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~  260 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET--RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYR  260 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC--EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce--eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence            34566777877773 4433  2222   245556554322  111111111111222344444 544 455555577765


Q ss_pred             EE--eecCcccccceeeeecce---eeEEEEecCCEE-EEEeCCC----cEEEEECC-CCceEEEEeecCCccceEEEEE
Q 047728          334 NF--WERELNLSHGGVLRGHKL---AILCLVTAGNLV-FSGSADM----SICIWRRK-ENEHICLSMLTGHSGPVKCLAV  402 (474)
Q Consensus       334 ~v--~d~~~~~~~~~~~~~~~~---~v~~~~~~~~~l-~sgs~dg----~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~  402 (474)
                      +|  ++...+..  ..+.....   .+..+..+++.| +++..++    .|..-++. .+..   ..+....+.-..+.|
T Consensus       261 hly~~~~~~~~~--~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~~~~~~~  335 (353)
T PF00930_consen  261 HLYLYDLDGGKP--RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLTCEDGDHYSASF  335 (353)
T ss_dssp             EEEEEETTSSEE--EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESSTTSSTTEEEEE
T ss_pred             EEEEEcccccce--eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---EeccCCCCCceEEEE
Confidence            55  45554432  22222222   346666665544 4665532    44445556 4543   344433333379999


Q ss_pred             eeCCcc
Q 047728          403 EKDDES  408 (474)
Q Consensus       403 ~~~~~~  408 (474)
                      +|+++.
T Consensus       336 Spdg~y  341 (353)
T PF00930_consen  336 SPDGKY  341 (353)
T ss_dssp             -TTSSE
T ss_pred             CCCCCE
Confidence            999983

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.13  E-value=0.22  Score=44.64  Aligned_cols=152  Identities=15%  Similarity=0.065  Sum_probs=86.8

Q ss_pred             cEEEEEEcCCCCEEEEEc---CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEE-CCCCceEE
Q 047728          311 AVTALAISPDAAIVYCGS---SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWR-RKENEHIC  386 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd-~~~~~~~~  386 (474)
                      .+.+.+++++++.++...   ....++++.....  ......+....--++.+++...+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999999877665   3334555554333  32333444445566777777777767677777774 33333221


Q ss_pred             EE-eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC--CCCCcccccccCCCCCCCccccCCCC
Q 047728          387 LS-MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP--LVSTTQQHPLEGHGVAPNSLPYAPSF  463 (474)
Q Consensus       387 ~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~p~~  463 (474)
                      .. ....-.+.|+.+.++||+....     +++....++.|.|=-+.....-  ................+.++    +|
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA-----~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v----~W  173 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVA-----VVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDV----AW  173 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEE-----EEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceee----ee
Confidence            11 1111122899999999998421     2333345677888776643222  22222222222334567777    67


Q ss_pred             CcCCceeecc
Q 047728          464 SSQGRICQKR  473 (474)
Q Consensus       464 s~Dg~~l~~~  473 (474)
                      .+|+++++-.
T Consensus       174 ~~~~~L~V~~  183 (253)
T PF10647_consen  174 SDDSTLVVLG  183 (253)
T ss_pred             cCCCEEEEEe
Confidence            7778877643

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.90  E-value=1.7  Score=41.51  Aligned_cols=147  Identities=12%  Similarity=0.123  Sum_probs=78.5

Q ss_pred             CCeeEEEecCCCCEEEEEE-----------CCC-cEEEEEcCC--cc--eeeeeeecCcceeEEEecCCCeEEEeeCCCc
Q 047728          221 DAISSLSMSEDQNLLYSAS-----------WDK-TFKVWRTSD--YK--CLESVIAHDDAVNSIVAGFDGLVFTGSADGT  284 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~  284 (474)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+...-.....+++.+++ |+++.....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i   92 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI   92 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence            3566889999998777643           223 677776543  32  223333334456889999898 555555543


Q ss_pred             EEEEEcccCCCc--eeeeeeeeeec----ccccEEEEEEcCCCCEEEEEcCC-------------------CcEEEeecC
Q 047728          285 VKVWRRELQGKG--TKHFFSQTLLK----QECAVTALAISPDAAIVYCGSSD-------------------GLVNFWERE  339 (474)
Q Consensus       285 i~iwd~~~~~~~--~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~d-------------------g~i~v~d~~  339 (474)
                      .++.|.......  ....+...+..    +......++|.|+|.+.++-+..                   |.|.-++.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            344454432211  11122222222    23457789999999876654421                   334445544


Q ss_pred             cccccceeeeeccee-eEEEEecCCEEEEEe
Q 047728          340 LNLSHGGVLRGHKLA-ILCLVTAGNLVFSGS  369 (474)
Q Consensus       340 ~~~~~~~~~~~~~~~-v~~~~~~~~~l~sgs  369 (474)
                      .... ..+..++..+ -+++.++|+++++-.
T Consensus       173 g~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            3321 1222233322 267777787776644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=95.87  E-value=0.5  Score=47.82  Aligned_cols=188  Identities=11%  Similarity=0.079  Sum_probs=87.9

Q ss_pred             CCCEEEEEECCC------cEEEEEcCCcceeeeeeec-CcceeEEEecCCCeEEEeeCCC-----cEEEEEcccCCCcee
Q 047728          231 DQNLLYSASWDK------TFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQGKGTK  298 (474)
Q Consensus       231 ~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~  298 (474)
                      ++..++.|+.++      .+..||..+.+....-... ...-.+++...+..++.|+.++     .+..||.....-  .
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW--R  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce--e
Confidence            455666666432      5778888765542211111 1111222222223667777652     466777653321  1


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCC------CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSD------GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                        ............ +++ .-++++++.|+.+      ..+..||..+..-... ..........+...++.+++.|+.+
T Consensus       372 --~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  447 (534)
T PHA03098        372 --EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS  447 (534)
T ss_pred             --eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence              111111111111 112 2256666777632      3578888876532111 1111111122344466666777643


Q ss_pred             --------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728          372 --------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ  434 (474)
Q Consensus       372 --------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~  434 (474)
                              ..+.+||..+.+...+..+.........+.  -++.        +++.||.+     ..|.+||..+.
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~--------iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNK--------IYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCE--------EEEEcCCcCCcccceeEEEeCCCC
Confidence                    238889998877554332221111111222  2555        66677654     46788887664

>PHA03098 kelch-like protein; Provisional

Probab=95.87  E-value=0.62  Score=47.11  Aligned_cols=155  Identities=13%  Similarity=0.082  Sum_probs=72.6

Q ss_pred             CCCEEEEEECC-----CcEEEEEcCCcceeeeeee-cCcceeEEEecCCCeEEEeeCC------CcEEEEEcccCCCcee
Q 047728          231 DQNLLYSASWD-----KTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDGLVFTGSAD------GTVKVWRRELQGKGTK  298 (474)
Q Consensus       231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~  298 (474)
                      ++.+++.|+.+     ..+..||..+.+-...-.. +...-.+++...+..++.|+.+      ..+..||+.+..=   
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W---  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW---  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee---
Confidence            56667777755     3467788766543221110 1111122233323356666632      3577888764321   


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCC--------cEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEe
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDG--------LVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGS  369 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs  369 (474)
                       ............. ++ ...++.+++.|+.+.        .+.+||..+..-... ..............++.+++.|+
T Consensus       419 -~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG  495 (534)
T PHA03098        419 -SKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGG  495 (534)
T ss_pred             -eecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcC
Confidence             1111111111111 12 222556666666432        378888876532211 01111111122334677777777


Q ss_pred             CC-----CcEEEEECCCCceEEEEeec
Q 047728          370 AD-----MSICIWRRKENEHICLSMLT  391 (474)
Q Consensus       370 ~d-----g~i~iwd~~~~~~~~~~~~~  391 (474)
                      .+     ..+.+||..+.+...+..+.
T Consensus       496 ~~~~~~~~~v~~yd~~~~~W~~~~~~p  522 (534)
T PHA03098        496 DKYEYYINEIEVYDDKTNTWTLFCKFP  522 (534)
T ss_pred             CcCCcccceeEEEeCCCCEEEecCCCc
Confidence            54     47889998887755443333

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.70  E-value=1.2  Score=45.32  Aligned_cols=174  Identities=15%  Similarity=0.112  Sum_probs=92.2

Q ss_pred             CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee------CCCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728          241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT  313 (474)
Q Consensus       241 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  313 (474)
                      +|.+.-.+-..-..+.-..+....+...+++|++ .++...      .|..-.||=....+..     .....  ....+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-----~~lt~--g~~~t  400 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-----VQVLE--GHSLT  400 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-----eeeec--CCCCC
Confidence            6766655433322332222333467788999999 443333      2444445533322221     11111  12377


Q ss_pred             EEEEcCCCCEEEEEcCC------------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE---EE
Q 047728          314 ALAISPDAAIVYCGSSD------------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI---WR  378 (474)
Q Consensus       314 ~l~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i---wd  378 (474)
                      .-.|+|+|..|++....            +.+.+.+++.+....  ........+.+++||..++... ++.|++   -.
T Consensus       401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr  477 (591)
T PRK13616        401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ  477 (591)
T ss_pred             CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence            88999998877766432            233333443332221  1123355577889999888766 577777   44


Q ss_pred             CCCCceEE--EEeec-CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          379 RKENEHIC--LSMLT-GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       379 ~~~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ...+....  ...+. +-...+..+.|..++.        ++ .+..++...+|.+.-
T Consensus       478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~--------L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDS--------LV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             CCCCceeecccEEeecccCCccccceEecCCE--------EE-EEecCCCCceEEEec
Confidence            34444211  01122 2334468899999987        44 445555566676654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.62  E-value=0.036  Score=34.61  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=28.4

Q ss_pred             ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      ...|..++|+|...        +||.+..||.|.+++++
T Consensus        11 ~~~v~~~~w~P~md--------LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD--------LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC--------EEEEEECCCeEEEEECC
Confidence            45699999999999        99999999999999993

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=1.6  Score=38.97  Aligned_cols=202  Identities=13%  Similarity=0.095  Sum_probs=115.2

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      .+-+..+.++  +++.+.+.++.-++|.|+.+......+..  ..+.-.++..+-+ +..++..|.-+.+.|+.......
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn-~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN-YAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC-EEEEeeccCcEEEEECCCCCCce
Confidence            3445667776  45777888888899999987654333321  1244455555422 66666667777788887654421


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce-eeEEEEecCCEEEEEeCCCcEEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL-AILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                         +..........-..++.+  |++-+.+..|+-+.+.|+.....+..+-.-... .+..+++.+++....-.+--+.+
T Consensus       163 ---lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvli  237 (370)
T COG5276         163 ---LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLI  237 (370)
T ss_pred             ---eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEE
Confidence               222222333333556665  667777889999999999877555332222222 55666666666555555666777


Q ss_pred             EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      -|..+.....+.-...-..++..-.|.-.++        +.+....+.-+.+-|+++...+
T Consensus       238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~--------~~Yvadga~gl~~idisnp~sp  290 (370)
T COG5276         238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGE--------YAYVADGAKGLPIIDISNPPSP  290 (370)
T ss_pred             EecCCCCCceEeeccccCCcccccceecccc--------eeeeeccccCceeEeccCCCCC
Confidence            7877665332222222222222212222333        5556666666777777665444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.29  E-value=0.49  Score=44.80  Aligned_cols=120  Identities=13%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             eEEEecCCCCEEEEEE--------------------CCCcEEEEEcCCcceeeeeeecC--cceeEEEecCCC---e-EE
Q 047728          224 SSLSMSEDQNLLYSAS--------------------WDKTFKVWRTSDYKCLESVIAHD--DAVNSIVAGFDG---L-VF  277 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~v~~~~~~---~-l~  277 (474)
                      .++-|.|..+.+++..                    ...++.+||+.+.+.++++....  ..+..|.|..+.   . ++
T Consensus       184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv  263 (461)
T PF05694_consen  184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV  263 (461)
T ss_dssp             --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred             CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence            4555666666666653                    24679999999999999987543  235566666543   2 33


Q ss_pred             EeeCCCcEEEEEcccCCCceeeeeeeeee-----------------cccccEEEEEEcCCCCEEEEEc-CCCcEEEeecC
Q 047728          278 TGSADGTVKVWRRELQGKGTKHFFSQTLL-----------------KQECAVTALAISPDAAIVYCGS-SDGLVNFWERE  339 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~  339 (474)
                      .+.-..+|..|-...... ..........                 .-..-|+.|.++.|.++|++.+ .+|.|+.||+.
T Consensus       264 g~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  264 GCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            333344444443321111 1100111110                 0134589999999999988765 58999999998


Q ss_pred             ccccc
Q 047728          340 LNLSH  344 (474)
Q Consensus       340 ~~~~~  344 (474)
                      .....
T Consensus       343 DP~~P  347 (461)
T PF05694_consen  343 DPFNP  347 (461)
T ss_dssp             STTS-
T ss_pred             CCCCC
Confidence            76443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.28  E-value=2  Score=38.05  Aligned_cols=191  Identities=10%  Similarity=0.085  Sum_probs=119.4

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .-..++-.|||..-+++...+.|--.|-.+++....-.+.......|...||+ .-++-+.. -|.-.|.++...   ..
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---t~  138 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---TR  138 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---EE
Confidence            34567778899888999888889889999998776655666667788888998 33332222 444445433221   11


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCC---------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSD---------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      +...............|++.|++-+++...         +.|++|+..         .+....-+|..++|..-++.-.+
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---------qG~gpyGi~atpdGsvwyaslag  209 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP---------QGGGPYGICATPDGSVWYASLAG  209 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC---------CCCCCcceEECCCCcEEEEeccc
Confidence            223344456678889999999988887532         233344332         23333457888888888887777


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.|-..|...+....+-.-.........+--+|.+.        +-+|-...+.+..+|-..
T Consensus       210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~--------~wittwg~g~l~rfdPs~  263 (353)
T COG4257         210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR--------AWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cceEEcccccCCcceecCCCcccccccccccCccCc--------EEEeccCCceeeEeCccc
Confidence            788777776664322222223233345555566666        666666666666666544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.24  E-value=3.2  Score=40.34  Aligned_cols=199  Identities=13%  Similarity=0.090  Sum_probs=101.5

Q ss_pred             CeeEEEecCCCCEEEEE-ECCC----cEEEEEcCCcceeeeeeecCcceeEEEecCCC-e-EEEeeCC----------Cc
Q 047728          222 AISSLSMSEDQNLLYSA-SWDK----TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L-VFTGSAD----------GT  284 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~~~~~d----------g~  284 (474)
                      .+....++|++++++.+ +..|    .|+++|+.+++.+....... ....+.|.+++ . +.+...+          ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467889999988855 3333    49999999997765432211 12239999997 4 4443332          12


Q ss_pred             EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCcc---cccceeeee-cceeeE
Q 047728          285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELN---LSHGGVLRG-HKLAIL  356 (474)
Q Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~---~~~~~~~~~-~~~~v~  356 (474)
                      |+.|.+.+.....  .++-...........+..++++++|+.....    ..+.+.|+...   ......+.. ......
T Consensus       204 v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  204 VYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             EEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            6666664432211  1111111112226788899999987764332    34777777764   112222222 222223


Q ss_pred             EEEecCCEEEEEe----CCCcEEEEECCCCce-EEEEeecCCcc--ceEEEEEeeCCccccccceEEEEEecCCC--cEE
Q 047728          357 CLVTAGNLVFSGS----ADMSICIWRRKENEH-ICLSMLTGHSG--PVKCLAVEKDDESLSREKRWILYSGSLDK--SVK  427 (474)
Q Consensus       357 ~~~~~~~~l~sgs----~dg~i~iwd~~~~~~-~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--~i~  427 (474)
                      .+...+..++.-+    ..+.|.-.++..... .....+..+..  .+..+....+ .        +++.--.++  .|+
T Consensus       282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~--------Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-Y--------LVLSYRENGSSRLR  352 (414)
T ss_dssp             EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-E--------EEEEEEETTEEEEE
T ss_pred             EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-E--------EEEEEEECCccEEE
Confidence            3333355443332    236677777766542 01123444444  3445544332 1        555555555  477


Q ss_pred             EEEcc
Q 047728          428 MWRVS  432 (474)
Q Consensus       428 vw~~~  432 (474)
                      ++++.
T Consensus       353 v~~~~  357 (414)
T PF02897_consen  353 VYDLD  357 (414)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            88887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.20  E-value=0.69  Score=45.25  Aligned_cols=170  Identities=15%  Similarity=0.225  Sum_probs=97.8

Q ss_pred             cceeEEEecCCC-eEEEee--CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC----CCEEEEEcCCCcEEE
Q 047728          263 DAVNSIVAGFDG-LVFTGS--ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD----AAIVYCGSSDGLVNF  335 (474)
Q Consensus       263 ~~v~~v~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~dg~i~v  335 (474)
                      .++..++|.... .+++.-  .+|.+++=|             ....+.-..|..++|.|-    ...|++.-....|.+
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd-------------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtV   86 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD-------------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTV   86 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC-------------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEE
Confidence            467888887433 344332  233333322             233445566999999994    346666778889999


Q ss_pred             eecCccccc-ceeeeec------ceee----EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          336 WERELNLSH-GGVLRGH------KLAI----LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       336 ~d~~~~~~~-~~~~~~~------~~~v----~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      |-+...... .+.+...      ..++    .-|+|....|++-.....-.++++..........+ .-.+-|.|.+|.+
T Consensus        87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~  165 (671)
T PF15390_consen   87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK  165 (671)
T ss_pred             EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence            987522110 1111111      1111    34566677777777666656677764433223334 4567899999999


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      ||..+      ++|.| ..=.-+|||-....                  ...+.|+|.|.-+|-++.
T Consensus       166 DG~RL------VVAvG-SsLHSyiWd~~qKt------------------L~~CsfcPVFdv~~~Ics  207 (671)
T PF15390_consen  166 DGQRL------VVAVG-SSLHSYIWDSAQKT------------------LHRCSFCPVFDVGGYICS  207 (671)
T ss_pred             cCCEE------EEEeC-CeEEEEEecCchhh------------------hhhCCcceeecCCCceEE
Confidence            99842      33444 34456788754431                  234567777777776654

>PHA02790 Kelch-like protein; Provisional

Probab=95.16  E-value=1.6  Score=43.36  Aligned_cols=183  Identities=13%  Similarity=0.109  Sum_probs=88.1

Q ss_pred             CCCEEEEEECCC-----cEEEEEcCCcceee--eeeecCcceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCceeee
Q 047728          231 DQNLLYSASWDK-----TFKVWRTSDYKCLE--SVIAHDDAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKGTKHF  300 (474)
Q Consensus       231 ~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~~  300 (474)
                      ++.++++|+.++     .+..||..+.+...  .+...... .+++. -++ ..++|+.++  .+..||.....    ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~----W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP-ANNKLYVVGGLPNPTSVERWFHGDAA----WV  344 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE-ECCEEEEECCcCCCCceEEEECCCCe----EE
Confidence            345566776543     46678877654322  12111111 12222 245 666776543  47777754221    11


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADMSICI  376 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg~i~i  376 (474)
                      ....+.........+  .-++++.+.|+.++   .+..||.++..-.... .............++.+.+.|   |.+.+
T Consensus       345 ~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~  419 (480)
T PHA02790        345 NMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEF  419 (480)
T ss_pred             ECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEE
Confidence            112221111111122  22577777777653   4667887655322110 111111122334566666666   35788


Q ss_pred             EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728          377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ  434 (474)
Q Consensus       377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~  434 (474)
                      ||..+++...+..+....... +++ .-+++        +.+.||.+     ..|..||..+.
T Consensus       420 ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~--------IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        420 YCESSNTWTLIDDPIYPRDNP-ELI-IVDNK--------LLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ecCCCCcEeEcCCCCCCcccc-EEE-EECCE--------EEEECCcCCCcccceEEEEECCCC
Confidence            999888765444443222222 222 23555        77777754     34667776654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=0.14  Score=53.24  Aligned_cols=102  Identities=19%  Similarity=0.311  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCcEEEeecCccccc--ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728          320 DAAIVYCGSSDGLVNFWERELNLSH--GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV  397 (474)
Q Consensus       320 ~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v  397 (474)
                      .+..++.|++.|.+...|.......  ...........++++.+|..++.|-.+|.|.+||+..++.  +..+..|..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCcc
Confidence            4557888999999999988775432  1122223344566667899999999999999999998773  45666666666


Q ss_pred             EEEEEe---eCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          398 KCLAVE---KDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       398 ~~l~~~---~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +++-+.   .++.        .++++..-|.  +|++.-
T Consensus       176 t~vi~v~~t~~nS--------~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNS--------KLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             ceEEEEEEeCCCc--------EEEEccCCCc--eEEEEe
Confidence            665443   3343        6888877776  676543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=0.25  Score=51.79  Aligned_cols=137  Identities=12%  Similarity=-0.004  Sum_probs=85.9

Q ss_pred             CCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceee-----eeee------cCcceeEEEecCCC--eEEEeeCCCcE
Q 047728          221 DAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLE-----SVIA------HDDAVNSIVAGFDG--LVFTGSADGTV  285 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~-----~~~~------~~~~v~~v~~~~~~--~l~~~~~dg~i  285 (474)
                      -+|..+...+|+...++..  .+-.|..||+++...-.     -+..      ......++.|.|.-  ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            3566666677766554433  34478889987543211     1111      22345677788875  67888899999


Q ss_pred             EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc--cccceeeeecceeeEEEEecCC
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLRGHKLAILCLVTAGN  363 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~v~~~~~~~~  363 (474)
                      ++..+.....      ...........++++|+|.|+.+++|...|++..|.....  ..+..........|+|+.|-+.
T Consensus       181 ~V~~~~~~~~------~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  181 RVKSTKQLAQ------NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhhhhhh------hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence            9987764332      1111334567899999999999999999999999976543  1111111112456777777443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.93  E-value=2.6  Score=37.70  Aligned_cols=164  Identities=12%  Similarity=0.050  Sum_probs=104.9

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      -...|.++.|+|+.+.|++......-.++=..+|+.+.++.-. -.....|.+..++ ++++--.++.+.++.+..+...
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            4455999999999999999988888888877889988887532 2234567777777 4445555778888876654321


Q ss_pred             ee----eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc--eeeeecc----eee---EEEEe---
Q 047728          297 TK----HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG--GVLRGHK----LAI---LCLVT---  360 (474)
Q Consensus       297 ~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~----~~v---~~~~~---  360 (474)
                      ..    ..........+.....++|+|....|+++-+-.-+.||.........  .....+.    ..+   ..+.+   
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~  243 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI  243 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence            11    11122222336678899999999988888888778887665332110  1111111    112   22233   


Q ss_pred             cCCEEEEEeCCCcEEEEECCCC
Q 047728          361 AGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      .+.+|+-+.+++.+.-.|....
T Consensus       244 ~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         244 TNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCcEEEEecCCceEEEEecCCC
Confidence            3667777778888888887654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=1.1  Score=42.29  Aligned_cols=137  Identities=11%  Similarity=0.038  Sum_probs=85.3

Q ss_pred             eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728          266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG  345 (474)
Q Consensus       266 ~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  345 (474)
                      +.+.|...+..+.+...|.+.=|-......   ..+.......+++|.++.|++|.+.|++--.+..|.+++........
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            345555444555555666677776553332   11233334456799999999999999999999999999874332222


Q ss_pred             e---eeeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          346 G---VLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       346 ~---~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      .   ..+.....+..|.|. ..-+|.-. +.-+.+|-+..... .+...+.|...|+-..|.++..
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pekr-slRlVks~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETA  166 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhhh-hhhhhhhcccCccEEEEccccc
Confidence            2   222233446666663 34444444 33467776654332 2455667888899999999877

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.74  E-value=2  Score=43.46  Aligned_cols=118  Identities=14%  Similarity=0.105  Sum_probs=72.6

Q ss_pred             eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe----cCCEEEEEeCCCcEEEEEC
Q 047728          304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT----AGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~sgs~dg~i~iwd~  379 (474)
                      .+...-..+.-+.-+.-++..++-+....+.|||.+...............|..+.+    +++.+++.+-.+.|.+|.-
T Consensus        24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            333334445555555555555555556679999998775433333344556666554    7889999888999999864


Q ss_pred             C-----CC----ceEEEEeecCCc-cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          380 K-----EN----EHICLSMLTGHS-GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       380 ~-----~~----~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      .     ..    ..+....+..|+ .+|.+..|.++|.         |+.|+ ++.+.|++-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~---------LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT---------LVVGS-GNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe---------EEEEe-CCEEEEECC
Confidence            2     11    111122234455 6899999999996         44443 346777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.61  E-value=4.1  Score=38.40  Aligned_cols=180  Identities=10%  Similarity=0.089  Sum_probs=86.4

Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC----Cc-EEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD----GT-VKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d----g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      ..|.-.|+.+|+....+. -...+..+.++|.. .+++-+..    .. -|||-++..+......  .. ......+..=
T Consensus       168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~~-~~~~e~~gHE  243 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--HR-RMEGESVGHE  243 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S----TTEEEEEE
T ss_pred             ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--ec-CCCCcccccc
Confidence            446667888877654443 46677888999987 44433333    22 3788777555432221  11 1223445566


Q ss_pred             EEcCCCCEEEEEc-----CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC----------------cE
Q 047728          316 AISPDAAIVYCGS-----SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM----------------SI  374 (474)
Q Consensus       316 ~~~~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg----------------~i  374 (474)
                      -|.|+|..|.--+     .+..|.-+|+.+.... .........-.-.+++|++++-=+.|.                -|
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i  322 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI  322 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-EEEEE-SEEEEEE-TTSSEEEEEE-------------------EE
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-EEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence            7889988665422     2335666777766432 111111122233345677776544332                46


Q ss_pred             EEEECCCCceEEEEee-------cCCcc-ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          375 CIWRRKENEHICLSML-------TGHSG-PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~-------~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +++++..++...+...       .++.. .=-...|+||++.       +|+++...|...||-+.-
T Consensus       323 ~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~-------VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  323 YLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW-------VLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             EEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE-------EEEEE-TTSS-EEEEEE-
T ss_pred             EEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE-------EEEECCCCCCccEEEEeC
Confidence            6788877664333221       11111 1245789999885       888999999988886643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.46  E-value=1.9  Score=43.60  Aligned_cols=115  Identities=12%  Similarity=0.086  Sum_probs=69.1

Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-ecCcceeEEEecC--CC-eEEEeeCCCcEEEEEc-----ccC
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSIVAGF--DG-LVFTGSADGTVKVWRR-----ELQ  293 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~--~~-~l~~~~~dg~i~iwd~-----~~~  293 (474)
                      ..-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|..  ++ .+++.+....|.+|--     ...
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3334444444444444455679999998876443322 3478899998864  55 7777788888888842     111


Q ss_pred             CCceeeeeeeeeecc-cccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          294 GKGTKHFFSQTLLKQ-ECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      ..............+ ..+|.+..|.++|..++.+  ++.+.|+|-.
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            111111111222233 3678999999999877654  3568888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.37  E-value=0.0095  Score=60.07  Aligned_cols=119  Identities=13%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             CCcEEEEeCCccc---cccccCccCEEEEEec-C--CEEEEEeCCCeEEEEecCCC--CcceeeeecccCccceeeeeec
Q 047728          129 SKNIRVWKNQREF---SGFKSNSGLVKAIVIS-N--EKIFSGHQDGKIRVWKVSSK--DASIHKRVGTLPTFKDFIKCSM  200 (474)
Q Consensus       129 dg~v~vwd~~~~~---~~~~~h~~~V~~i~~~-~--~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~  200 (474)
                      .+-|++-+.....   ...++..+.|-.+.|. .  ..+.  -.-|.+.||+++--  +......+...           
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~-----------  176 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPI-----------  176 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeec-----------
Confidence            3446776644332   3456667777777775 1  1222  34467889998752  22211111110           


Q ss_pred             CCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728          201 KPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG  274 (474)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  274 (474)
                                .+.+.   .-.-|...-|.++.-++..+-.++.|++....+... ..+..|...+..+++...|
T Consensus       177 ----------~p~gs---~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  177 ----------TPYGS---DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             ----------CcCCC---CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence                      00000   012233333334666777777888988877655333 4455688888877766555

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.36  E-value=3.5  Score=36.64  Aligned_cols=183  Identities=15%  Similarity=0.067  Sum_probs=103.3

Q ss_pred             eeEEEecCCCCEEEEEECCC--cEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceee
Q 047728          223 ISSLSMSEDQNLLYSASWDK--TFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      ...+.|..++.++-+.+.-|  .|+.+|+.+++......-.. -.-..++...+......=.++...+||..+.+.    
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~----  122 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK----  122 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE----
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE----
Confidence            45778877777777887666  68999999998776654322 122344555454555556788899999875432    


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee-ecceeeE---EEEe-cCCEEEEEeCCCcE
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR-GHKLAIL---CLVT-AGNLVFSGSADMSI  374 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~---~~~~-~~~~l~sgs~dg~i  374 (474)
                        ...+ .....=+.++  .++..|+.......++++|..+......+.. ....++.   .+-. +|...|=.-....|
T Consensus       123 --~~~~-~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I  197 (264)
T PF05096_consen  123 --IGTF-PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRI  197 (264)
T ss_dssp             --EEEE-E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEE
T ss_pred             --EEEE-ecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeE
Confidence              1111 1123445555  4567777777778899999876544332221 1222222   2222 45555555566677


Q ss_pred             EEEECCCCceEEEEeecC----------C---ccceEEEEEeeCCccccccceEEEEEec
Q 047728          375 CIWRRKENEHICLSMLTG----------H---SGPVKCLAVEKDDESLSREKRWILYSGS  421 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~----------h---~~~v~~l~~~~~~~~~~~~~~~~l~s~s  421 (474)
                      ...|..+++......+.+          +   ..-.+.||+.|....       +++||-
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-------l~vTGK  250 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-------LFVTGK  250 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-------EEEEET
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-------EEEEeC
Confidence            788888887432221110          1   345789999988764       677774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.12  E-value=4.7  Score=41.34  Aligned_cols=112  Identities=12%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             eeEEEecC--CCCEEEEEECCCcEEEEEcCC-------c----c---------eeeeeeecCcceeEEEec--CCC-eEE
Q 047728          223 ISSLSMSE--DQNLLYSASWDKTFKVWRTSD-------Y----K---------CLESVIAHDDAVNSIVAG--FDG-LVF  277 (474)
Q Consensus       223 V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~v~~~--~~~-~l~  277 (474)
                      |+-|....  +...|+.|.+||.|.+|.+++       .    +         +...+. -...++.++++  ... +||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            44444433  567899999999999997631       0    0         111122 24578899987  555 777


Q ss_pred             EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC---C---EEEEEcCCCcEEEeec
Q 047728          278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA---A---IVYCGSSDGLVNFWER  338 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~---~l~~~~~dg~i~v~d~  338 (474)
                      +++....|.||-+.......   .......+...|.+|+|-++.   .   .|++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~---~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERF---YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEecccccc---ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888765431111   111122366779999998743   2   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.08  E-value=9.1  Score=40.27  Aligned_cols=202  Identities=8%  Similarity=-0.016  Sum_probs=105.6

Q ss_pred             CCEEEEEECCCcEEEEEcCCcceeeeeeecCcc--------eeEEEec-----------------CCCeEEEeeCCCcEE
Q 047728          232 QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA--------VNSIVAG-----------------FDGLVFTGSADGTVK  286 (474)
Q Consensus       232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~v~~~-----------------~~~~l~~~~~dg~i~  286 (474)
                      +..|+.++.++.|.-.|..+|+.+-.+......        .+.+.+.                 .++.++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888899999999999988776542211        1122221                 122788899999999


Q ss_pred             EEEcccCCCceeee------eeeeeecccccEEEEEEcC--CCCEEEEEcC----------CCcEEEeecCcccccceee
Q 047728          287 VWRRELQGKGTKHF------FSQTLLKQECAVTALAISP--DAAIVYCGSS----------DGLVNFWERELNLSHGGVL  348 (474)
Q Consensus       287 iwd~~~~~~~~~~~------~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~  348 (474)
                      -.|.++++......      ...........-..+.-.|  .+..+++|+.          +|.|+-+|.++++..-...
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            99987765421110      0000000000001112222  2345555642          6889999998887654433


Q ss_pred             eecc----------------e---eeEEEEecCCEEEEEeC------------------CCcEEEEECCCCceEEEEeec
Q 047728          349 RGHK----------------L---AILCLVTAGNLVFSGSA------------------DMSICIWRRKENEHICLSMLT  391 (474)
Q Consensus       349 ~~~~----------------~---~v~~~~~~~~~l~sgs~------------------dg~i~iwd~~~~~~~~~~~~~  391 (474)
                      .+..                .   ...++.+...+++.+..                  .+.|.-.|.++++..-.....
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            2110                0   11233333334443221                  244555666666643222222


Q ss_pred             CCccc-------eEEEEEee-CCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728          392 GHSGP-------VKCLAVEK-DDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL  438 (474)
Q Consensus       392 ~h~~~-------v~~l~~~~-~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~  438 (474)
                      .|.-.       ..-+.+.. +++     .+..++.++.+|.+.+.|-.++++..
T Consensus       434 ~hD~WD~D~~~~p~L~d~~~~~G~-----~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       434 HHDLWDMDVPAQPSLVDLPDADGT-----TVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             CCccccccccCCceEEeeecCCCc-----EeeEEEEECCCCEEEEEECCCCCEEe
Confidence            22210       11111111 221     22379999999999999998886543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=4.4  Score=36.32  Aligned_cols=275  Identities=12%  Similarity=0.114  Sum_probs=152.8

Q ss_pred             ecCcEEEEEEcCCEEEEeeCCCcEEEEeCCcc----ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceee
Q 047728          109 EEGHIYSLAAAGDLLYTGSDSKNIRVWKNQRE----FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHK  184 (474)
Q Consensus       109 h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  184 (474)
                      -++-+..+.+.+++.+.+..+.-++|.|...+    +..+-.-.+--.++..+|++...+..|.-+.+.|+.........
T Consensus        85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la  164 (370)
T COG5276          85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence            34556778888999999998888999995532    22222223566778888999999996666888898876543322


Q ss_pred             eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee--eecC
Q 047728          185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV--IAHD  262 (474)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~  262 (474)
                      .....                             ....-..++.+  |++-+.+..|+-+.+.|+........+  ....
T Consensus       165 grya~-----------------------------~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g  213 (370)
T COG5276         165 GRYAL-----------------------------PGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG  213 (370)
T ss_pred             eeecc-----------------------------CCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC
Confidence            21111                             22223455554  678888889999999999765432222  1123


Q ss_pred             cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          263 DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       263 ~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      ..+..+..+++..+++- .+--+.+-|........  .+-.........++  .+.-.+++.+....+.-+.+-|+.+..
T Consensus       214 ~g~~sv~vsdnr~y~vv-y~egvlivd~s~~ssp~--~~gsyet~~p~~~s--~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         214 PGTYSVSVSDNRAYLVV-YDEGVLIVDVSGPSSPT--VFGSYETSNPVSIS--TVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             CceEEEEecCCeeEEEE-cccceEEEecCCCCCce--EeeccccCCccccc--ceecccceeeeeccccCceeEeccCCC
Confidence            36777877766533333 33445555655333211  11111111111222  223346666667777777777776543


Q ss_pred             ccceeeeec----ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728          343 SHGGVLRGH----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY  418 (474)
Q Consensus       343 ~~~~~~~~~----~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~  418 (474)
                      ..  ++..+    ......+...+.++..+..+ ...+-+....+.  .....+....+.+.+.+-+.+        ++.
T Consensus       289 sp--fl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s~--m~~~~g~~ti~~s~~v~~~~q--------~~y  355 (370)
T COG5276         289 SP--FLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPSM--MDKRPGRPTIGQSCDVSVDTQ--------IIY  355 (370)
T ss_pred             CC--chhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChhh--cccccCcceEeeecceEEEee--------EEE
Confidence            22  11111    11223444456666666554 444555543321  112222223344444444555        788


Q ss_pred             EecCCCcEEEEEcc
Q 047728          419 SGSLDKSVKMWRVS  432 (474)
Q Consensus       419 s~s~Dg~i~vw~~~  432 (474)
                      +...++-+.||+..
T Consensus       356 ~~d~~~gl~i~~~~  369 (370)
T COG5276         356 STDYNGGLSIIEYL  369 (370)
T ss_pred             EeecCCCEEEEEec
Confidence            88889999999863

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.95  E-value=8.2  Score=39.29  Aligned_cols=49  Identities=16%  Similarity=0.295  Sum_probs=37.8

Q ss_pred             cEEEEe-CCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCC
Q 047728          131 NIRVWK-NQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKD  179 (474)
Q Consensus       131 ~v~vwd-~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~  179 (474)
                      .|+|++ .++.+.......+.+..+.|+ ...|+....||++++|++-...
T Consensus        65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF  115 (829)
T ss_pred             eEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence            377777 445565555555588899999 6789999999999999987654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.93  E-value=3.6  Score=36.64  Aligned_cols=259  Identities=14%  Similarity=0.116  Sum_probs=129.4

Q ss_pred             EcCC-EEEEeeCCCcEEEE-eCCccccccccCccCEEEEEecCCEEEEEeCCCe-EEEEecCCCCcceeeeecccCccce
Q 047728          118 AAGD-LLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGK-IRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       118 ~~~~-~l~tgs~dg~v~vw-d~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      .+|. .+++.+.+|.+.-= .+...-..+.-|...-.+       ++.+-.-|+ ..++|.+..+......         
T Consensus        45 ~dgs~g~a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ra-------vafARrPGtf~~vfD~~~~~~pv~~~---------  108 (366)
T COG3490          45 RDGSFGAATLSEAGKIVFATALPARGHGIAFHPALPRA-------VAFARRPGTFAMVFDPNGAQEPVTLV---------  108 (366)
T ss_pred             cCCceeEEEEccCCceeeeeecccccCCeecCCCCcce-------EEEEecCCceEEEECCCCCcCcEEEe---------
Confidence            3455 46667777765432 122222222223333333       333444443 3567777765543221         


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC-----CcEEEEEcCC-cceeeeeeecCcceeEE
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD-----KTFKVWRTSD-YKCLESVIAHDDAVNSI  268 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~-~~~~~~~~~~~~~v~~v  268 (474)
                                     ..+...|.+|.      .|+|||.+|+..-.|     |.|-|||.+. .+.+..+..|.-....+
T Consensus       109 ---------------s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev  167 (366)
T COG3490         109 ---------------SQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEV  167 (366)
T ss_pred             ---------------cccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCccee
Confidence                           12223455664      589999999876543     7799999874 34566777888778889


Q ss_pred             EecCCCeEEEeeCCCcEEEE--------------------EcccCCCceeeeeeeeee--cccccEEEEEEcCCCCEEEE
Q 047728          269 VAGFDGLVFTGSADGTVKVW--------------------RRELQGKGTKHFFSQTLL--KQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~iw--------------------d~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~  326 (474)
                      .+.+||.+++... |-|..-                    |..++....    +.++.  .+.-.|..++..+++..++.
T Consensus       168 ~lm~DGrtlvvan-GGIethpdfgR~~lNldsMePSlvlld~atG~lie----kh~Lp~~l~~lSiRHld~g~dgtvwfg  242 (366)
T COG3490         168 TLMADGRTLVVAN-GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE----KHTLPASLRQLSIRHLDIGRDGTVWFG  242 (366)
T ss_pred             EEecCCcEEEEeC-CceecccccCccccchhhcCccEEEEeccccchhh----hccCchhhhhcceeeeeeCCCCcEEEE
Confidence            9999993333222 222222                    222111111    11111  34456888888888877665


Q ss_pred             EcCCCcEEEe----e-cCcccccceeee--------ecceeeEEEEecCCEEE-EEeCCCcEEEEECCCCceEEEEeecC
Q 047728          327 GSSDGLVNFW----E-RELNLSHGGVLR--------GHKLAILCLVTAGNLVF-SGSADMSICIWRRKENEHICLSMLTG  392 (474)
Q Consensus       327 ~~~dg~i~v~----d-~~~~~~~~~~~~--------~~~~~v~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~  392 (474)
                      +-..|.-.=+    - ...++.+..+..        .+-...++..-+..+++ +.=..+...+||..++.......+..
T Consensus       243 cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d  322 (366)
T COG3490         243 CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD  322 (366)
T ss_pred             EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence            4333211000    0 000111100000        11111233333344444 44456678899999998443222221


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                          +..++-  ...        -++..+.+|.|.++.-.
T Consensus       323 ----aaGva~--~~~--------gf~vssg~G~~~~~s~~  348 (366)
T COG3490         323 ----AAGVAA--AKG--------GFAVSSGQGRIIFYSRA  348 (366)
T ss_pred             ----ccccee--ccC--------ceEEecCCceEEecccc
Confidence                222333  222        35566678888887433

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.91  E-value=1  Score=47.58  Aligned_cols=145  Identities=11%  Similarity=-0.040  Sum_probs=86.3

Q ss_pred             cceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeee-----eeeeeecccccEEEEEEcCCC-CEEEEEcCCCcE
Q 047728          263 DAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHF-----FSQTLLKQECAVTALAISPDA-AIVYCGSSDGLV  333 (474)
Q Consensus       263 ~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i  333 (474)
                      -++..+...+|.   .++..+.+-.|..||++.-.......     ..........-..++.|+|.- ...++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            355666666776   33334445578999987543221111     011122233445677888843 345667788889


Q ss_pred             EEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCc
Q 047728          334 NFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDE  407 (474)
Q Consensus       334 ~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~  407 (474)
                      ++..+......... ........++|++.|+.++.|-..|++.-|...-.....+..... ....|.+|+|.....
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEeccee
Confidence            88876544332222 334455668888899999999999999998765432111111111 146799999987765

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.89  E-value=4.1  Score=40.19  Aligned_cols=119  Identities=14%  Similarity=0.134  Sum_probs=72.5

Q ss_pred             eeccCCeeEEEecCC----CCEEEEEECCCcEEEEEcC-----Ccceeeeeeec-Cc----ceeEEEecCCC-eEEEeeC
Q 047728          217 IKHFDAISSLSMSED----QNLLYSASWDKTFKVWRTS-----DYKCLESVIAH-DD----AVNSIVAGFDG-LVFTGSA  281 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~-~~----~v~~v~~~~~~-~l~~~~~  281 (474)
                      .|...-|..+.|.|-    ...|++......|.+|-+.     +.+.+.....+ ..    -...+.|+|.. .|++-..
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            346667999999983    3356666778899999875     22322222111 11    22456799988 4444444


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCc
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWEREL  340 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~  340 (474)
                      ...-.+++++....     ....-....+.|.|.+|.+||+.|+++- ..=.-++||-..
T Consensus       133 ~dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  133 RDVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            44444555554332     1233345677899999999999877653 333467898543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.87  E-value=9.9  Score=39.96  Aligned_cols=240  Identities=9%  Similarity=0.029  Sum_probs=117.8

Q ss_pred             cEEEEeCCccccccccCccCEEEEEe-cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEe
Q 047728          131 NIRVWKNQREFSGFKSNSGLVKAIVI-SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR  209 (474)
Q Consensus       131 ~v~vwd~~~~~~~~~~h~~~V~~i~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (474)
                      .||+++.......+..-.+.....++ +...++.++.++.+...+++.........                        
T Consensus       471 ~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~------------------------  526 (1096)
T KOG1897|consen  471 SIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH------------------------  526 (1096)
T ss_pred             cEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee------------------------
Confidence            36776654344444433333333333 34577777777777776766554211100                        


Q ss_pred             eeccceeeeccCCeeEEEecCC---CC---EEEEEECCCcEEEEEcC-Ccceeeee--ee--cCcceeEEEecCCC-eEE
Q 047728          210 RHRNGLWIKHFDAISSLSMSED---QN---LLYSASWDKTFKVWRTS-DYKCLESV--IA--HDDAVNSIVAGFDG-LVF  277 (474)
Q Consensus       210 ~~~~~~~~~h~~~V~~l~~~~~---~~---~l~s~s~dg~i~iwd~~-~~~~~~~~--~~--~~~~v~~v~~~~~~-~l~  277 (474)
                             ..-...|.|+.++|-   .+   +++.|.++..+.+.-.. +...+...  ..  -...|....+-.|. +|+
T Consensus       527 -------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLl  599 (1096)
T KOG1897|consen  527 -------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLL  599 (1096)
T ss_pred             -------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEE
Confidence                   114567999999973   23   78889888877665432 22222211  11  12233334444444 899


Q ss_pred             EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE
Q 047728          278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC  357 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~  357 (474)
                      ++..||.+..|-+....-..  .......-...++.--.|+..++.-+.+..|.-..+|..+........-...-..+..
T Consensus       600 valgdG~l~~fv~d~~tg~l--sd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~  677 (1096)
T KOG1897|consen  600 VALGDGALLYFVLDINTGQL--SDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCP  677 (1096)
T ss_pred             EEcCCceEEEEEEEcccceE--ccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcc
Confidence            99999999887665332110  0011111223344444565554444444555555555544332221111111112222


Q ss_pred             EEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          358 LVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       358 ~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ++.+  ...|+++. .+.+++.-++.-+...+.++.-+ .....+++.+.
T Consensus       678 f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~  725 (1096)
T KOG1897|consen  678 FNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQES  725 (1096)
T ss_pred             cccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEeccc
Confidence            3322  34455544 45677776655443334444333 34566666653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.73  E-value=0.024  Score=53.52  Aligned_cols=139  Identities=13%  Similarity=0.151  Sum_probs=99.6

Q ss_pred             EcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728          118 AAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       118 ~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      +.+.-++.++.+..|..||.......-..-++....++|+  ++ .++.+...+.+.+|++.+........-+       
T Consensus        44 ~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg-------  116 (615)
T KOG2247|consen   44 PEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG-------  116 (615)
T ss_pred             cCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-------
Confidence            4455578888888899998655544444445566677787  33 5666778889999999876432211100       


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG  274 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  274 (474)
                                             .|....  +.|++....++.+...+.+.|++..+.+.+...-.|...+.++++.+.+
T Consensus       117 -----------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  117 -----------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             -----------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence                                   022222  6788888888889899999999988877777666689999999999999


Q ss_pred             eEEEeeCCCcEEEE
Q 047728          275 LVFTGSADGTVKVW  288 (474)
Q Consensus       275 ~l~~~~~dg~i~iw  288 (474)
                      +.+.++.|..+.+-
T Consensus       172 ~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  172 YVILCDCDNTLSVT  185 (615)
T ss_pred             eeeecCcHHHHHHh
Confidence            88888888766544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.62  E-value=7.5  Score=37.78  Aligned_cols=200  Identities=13%  Similarity=0.092  Sum_probs=95.8

Q ss_pred             EEEecCCCCEEEEEECCC-----------cEEEEEcCCccee--eeeeecCcc--eeEEEecCCC-eEE-EeeCC---Cc
Q 047728          225 SLSMSEDQNLLYSASWDK-----------TFKVWRTSDYKCL--ESVIAHDDA--VNSIVAGFDG-LVF-TGSAD---GT  284 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg-----------~i~iwd~~~~~~~--~~~~~~~~~--v~~v~~~~~~-~l~-~~~~d---g~  284 (474)
                      .+.|.++++.|+....+.           .|+.|.+.+...-  ..+......  ...+..++++ .++ .....   ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            389999988777665433           3788888765432  333333333  4577888888 333 33333   34


Q ss_pred             EEEEEcccCCCceeeeeeeeeecccccEE-EEEEcCCCCEEEEEc---CCCcEEEeecCcccc--cceeeeecce--eeE
Q 047728          285 VKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAISPDAAIVYCGS---SDGLVNFWERELNLS--HGGVLRGHKL--AIL  356 (474)
Q Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~~~--~v~  356 (474)
                      +.+.|+...... .. ....+......+. .+... .+.+++...   ..+.|...++.....  ....+..+..  .+.
T Consensus       254 v~~~d~~~~~~~-~~-~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~  330 (414)
T PF02897_consen  254 VYLLDLDDGGSP-DA-KPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE  330 (414)
T ss_dssp             EEEEECCCTTTS-S--SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred             EEEEeccccCCC-cC-CcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence            666676643100 00 1122222222333 33333 443444332   235666677766542  1223444433  566


Q ss_pred             EEEecCCEEEEEe-CCC--cEEEEECC-CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC--CCcEEEEE
Q 047728          357 CLVTAGNLVFSGS-ADM--SICIWRRK-ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL--DKSVKMWR  430 (474)
Q Consensus       357 ~~~~~~~~l~sgs-~dg--~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~--Dg~i~vw~  430 (474)
                      .+...+++|+... .++  .|+++++. +.... ...+.. .+.|..+...++...      .++...|.  -++|..||
T Consensus       331 ~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~-~~~~p~-~g~v~~~~~~~~~~~------~~~~~ss~~~P~~~y~~d  402 (414)
T PF02897_consen  331 DVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR-EIPLPE-AGSVSGVSGDFDSDE------LRFSYSSFTTPPTVYRYD  402 (414)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETT-TEEEE-EEESSS-SSEEEEEES-TT-SE------EEEEEEETTEEEEEEEEE
T ss_pred             EEEEECCEEEEEEEECCccEEEEEECCCCcEEe-eecCCc-ceEEeccCCCCCCCE------EEEEEeCCCCCCEEEEEE
Confidence            6776666655544 443  57888888 44322 222222 344555544444432      12333332  34677777


Q ss_pred             ccCCC
Q 047728          431 VSEQA  435 (474)
Q Consensus       431 ~~~~~  435 (474)
                      +.+++
T Consensus       403 ~~t~~  407 (414)
T PF02897_consen  403 LATGE  407 (414)
T ss_dssp             TTTTC
T ss_pred             CCCCC
Confidence            77764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.61  E-value=7.2  Score=37.55  Aligned_cols=78  Identities=13%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe----cC----------------C-EE
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT----AG----------------N-LV  365 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~----------------~-~l  365 (474)
                      .....+.+++.+|.+++.++...-|.|.++|+.+...+ +..++....-+.|-.    ..                . ++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-hhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            34456899999999999999888899999999887554 455555544333321    11                1 23


Q ss_pred             EEEeCCCcEEEEECCCCceE
Q 047728          366 FSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~~~~  385 (474)
                      +-+-.-|.|.||.++.+..+
T Consensus       384 IyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             EEeccCCeEEEEecCCCCEE
Confidence            33446788999999888744

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=93.50  E-value=8.4  Score=37.94  Aligned_cols=266  Identities=16%  Similarity=0.150  Sum_probs=125.7

Q ss_pred             cCcEEEEEEc-CCEEEEeeCCCcEEEEeCCc--ccccccc-CccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceee
Q 047728          110 EGHIYSLAAA-GDLLYTGSDSKNIRVWKNQR--EFSGFKS-NSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHK  184 (474)
Q Consensus       110 ~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~--~~~~~~~-h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~  184 (474)
                      ...|.++.++ ...|..|+.|| +..||..+  .+..-.. ...+|..+..+ ...|..|+.+| |.+.+.+........
T Consensus       164 d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~  241 (671)
T COG3292         164 DTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWG  241 (671)
T ss_pred             CccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccC
Confidence            3457788887 55788888888 45555332  1221111 12556666666 77899999998 777776652221100


Q ss_pred             eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce-eeeeeec--
Q 047728          185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC-LESVIAH--  261 (474)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~--  261 (474)
                      .  .+                             ....|..+.-..+| .+-.|+.+|..+. ....... +...+.|  
T Consensus       242 ~--~l-----------------------------p~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~  288 (671)
T COG3292         242 P--ML-----------------------------PSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLG  288 (671)
T ss_pred             C--CC-----------------------------cchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCc
Confidence            0  00                             12223333322233 4556666664432 3332222 2222222  


Q ss_pred             CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcC--CCCEEEEEcCCCcEEEeec
Q 047728          262 DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISP--DAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       262 ~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~  338 (474)
                      -..|..+-...+|.+-+++.+|.+++-+-.-..       ....... ...+..++..|  .+..+-...+-|.+.+-+-
T Consensus       289 ~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~-------ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~  361 (671)
T COG3292         289 VSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKR-------MAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANG  361 (671)
T ss_pred             cccccceeeccCCCEeeeccCceEEEecchhhh-------eeeeecCCCchhhhhccCchhcccceeeccccceEEEecC
Confidence            245666666667788888888888775432110       0001111 01111111111  1111111112222222222


Q ss_pred             Ccccccceee--eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee-cCCccceEEEEEeeCCccccccceE
Q 047728          339 ELNLSHGGVL--RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML-TGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       339 ~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      .++.......  ++.....+++.. +..+..|+...-+..|+.++.-.. .... ..-.++|..+.=.|+++        
T Consensus       362 stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~av-lde~agl~ss~V~aived~dns--------  431 (671)
T COG3292         362 STGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAV-LDEDAGLPSSEVSAIVEDPDNS--------  431 (671)
T ss_pred             CCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccc-cccccCCcccceeeeeecCCCC--------
Confidence            2222221111  122222233333 556666776655666766552111 1111 12346788888888886        


Q ss_pred             EEEEecCCCcEEE
Q 047728          416 ILYSGSLDKSVKM  428 (474)
Q Consensus       416 ~l~s~s~Dg~i~v  428 (474)
                       |..|+.+|.++.
T Consensus       432 -LWIGTs~Glvk~  443 (671)
T COG3292         432 -LWIGTSGGLVKR  443 (671)
T ss_pred             -EEEeccCCeEec
Confidence             778888886553

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.45  E-value=0.38  Score=29.15  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=27.1

Q ss_pred             ccEEEEEEcCCC---CEEEEEcCCCcEEEeecCcccc
Q 047728          310 CAVTALAISPDA---AIVYCGSSDGLVNFWERELNLS  343 (474)
Q Consensus       310 ~~v~~l~~~~~~---~~l~~~~~dg~i~v~d~~~~~~  343 (474)
                      +.+.++.|+|+.   .+|+.+-.-|.|.++|+++...
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~   37 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM   37 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence            368899999844   4888888889999999996443

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.08  E-value=4.5  Score=42.08  Aligned_cols=27  Identities=15%  Similarity=0.116  Sum_probs=21.4

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      .|..|.++++|++|+..|..| |.|..+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            688999999999999988766 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=93.04  E-value=2.1  Score=40.18  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      ++.+..-+..+.|-+|+..+++...........                            ....-.-+.|.+...+++.
T Consensus       235 ~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~d----------------------------sag~~~kL~w~ng~~~li~  286 (465)
T KOG2714|consen  235 GTQLVALSSVGKIGVWHAVTQQAQDVQPISSYD----------------------------SAGSFLKLGWLNGSNLLID  286 (465)
T ss_pred             hhhhhhccccccccccchhhhceeeeeeccCcc----------------------------ccCChhhhccccCceeEEE
Confidence            455666677788999998887443222222110                            1222334455543333332


Q ss_pred             E-------ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728          238 A-------SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC  310 (474)
Q Consensus       238 ~-------s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (474)
                      .       ..++.|++||.++..            +...|.   .++.++..+.+++-+...............+..|..
T Consensus       287 ~~~fp~~~kdN~~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~  351 (465)
T KOG2714|consen  287 SQKFPLRMKDNDLIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGS  351 (465)
T ss_pred             EeeccccccCCceEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCC
Confidence            2       356788999988755            112232   456677777788777554433333334445555554


Q ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          311 AVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      +..         ++=.+...+.+++|......
T Consensus       352 ~L~---------~idv~~~~~~~~~~~~tr~r  374 (465)
T KOG2714|consen  352 PLG---------LIDVCSDGGHVRVWNSTRFR  374 (465)
T ss_pred             Ccc---------eeehhhhCCcceEEeecccc
Confidence            421         23334455678888876543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.89  E-value=9  Score=36.60  Aligned_cols=146  Identities=18%  Similarity=0.126  Sum_probs=76.5

Q ss_pred             CCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee--eeec
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ--TLLK  307 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~  307 (474)
                      +|+ |+.++.++.+..+|.++++.+....... -.+..-....++.++.++.++.+...|..++..........  ....
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~  189 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI  189 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence            554 8888899999999998999888876655 11222223334556666577887777766544321111110  1111


Q ss_pred             ccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeeecceee-----------EEEEecCCEEEEEeCCCcE
Q 047728          308 QECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRGHKLAI-----------LCLVTAGNLVFSGSADMSI  374 (474)
Q Consensus       308 ~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~l~sgs~dg~i  374 (474)
                      ...++      .....++.+..  ++.+.-+|.+++.........+....           -.+. .+.-++.++.++.+
T Consensus       190 ~~~~~------~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~  262 (370)
T COG1520         190 YGSPA------IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKL  262 (370)
T ss_pred             ccCce------eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEE-ECCcEEEEecCCeE
Confidence            11111      12334444444  55566666665544333211111111           0111 13334667777878


Q ss_pred             EEEECCCCce
Q 047728          375 CIWRRKENEH  384 (474)
Q Consensus       375 ~iwd~~~~~~  384 (474)
                      ...|..+++.
T Consensus       263 ~~l~~~~G~~  272 (370)
T COG1520         263 LCLDADTGEL  272 (370)
T ss_pred             EEEEcCCCce
Confidence            8888888874

>PLN02153 epithiospecifier protein

Probab=92.72  E-value=9  Score=36.13  Aligned_cols=55  Identities=7%  Similarity=-0.052  Sum_probs=29.7

Q ss_pred             CcEEEeecCcccccceee----eecceeeEEEEecCCEEEEEeCC--------------CcEEEEECCCCceE
Q 047728          331 GLVNFWERELNLSHGGVL----RGHKLAILCLVTAGNLVFSGSAD--------------MSICIWRRKENEHI  385 (474)
Q Consensus       331 g~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sgs~d--------------g~i~iwd~~~~~~~  385 (474)
                      ..+.+||+.+..-.....    ........+...++.+++.|+..              +.+..||..+.+..
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~  289 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE  289 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence            458888887653221110    11112223344567777777742              25778888777644

>PHA02790 Kelch-like protein; Provisional

Probab=92.57  E-value=8.9  Score=38.16  Aligned_cols=143  Identities=9%  Similarity=0.070  Sum_probs=67.8

Q ss_pred             CCCEEEEEECC--CcEEEEEcCCcceee--eeeecCcceeEEEecCCC-eEEEeeCCC---cEEEEEcccCCCceeeeee
Q 047728          231 DQNLLYSASWD--KTFKVWRTSDYKCLE--SVIAHDDAVNSIVAGFDG-LVFTGSADG---TVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       231 ~~~~l~s~s~d--g~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~  302 (474)
                      ++...+.|+.+  ..+..||..+.+-..  .+.. ...-.+++.. ++ ..+.|+.++   .+..||.+...    ....
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~-~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~----W~~~  391 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK-PRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQ----WQFG  391 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC-CCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCE----EEeC
Confidence            56666677653  357778876543221  1211 1111122322 45 666676553   46677765321    1111


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC-----CcEEE
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD-----MSICI  376 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d-----g~i~i  376 (474)
                      .......... +++ .-++.+.+.|   |.+.+||.++..-... .........-+...++++.+.|+.+     ..+..
T Consensus       392 ~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        392 PSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             CCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence            1111111111 121 2245556655   3577888876532211 1111122223344577788888754     35778


Q ss_pred             EECCCCce
Q 047728          377 WRRKENEH  384 (474)
Q Consensus       377 wd~~~~~~  384 (474)
                      ||..+++.
T Consensus       467 Yd~~~~~W  474 (480)
T PHA02790        467 YNNRTYSW  474 (480)
T ss_pred             EECCCCeE
Confidence            88877664

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.52  E-value=0.7  Score=28.04  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=25.8

Q ss_pred             CCeeEEEecCCC---CEEEEEECCCcEEEEEcCC
Q 047728          221 DAISSLSMSEDQ---NLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       221 ~~V~~l~~~~~~---~~l~s~s~dg~i~iwd~~~  251 (474)
                      ++|.++.|+|+.   .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999843   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.44  E-value=16  Score=38.23  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=27.9

Q ss_pred             ccCCeeEEEecCC---CCEEEEEECCCcEEEEEcCCcc
Q 047728          219 HFDAISSLSMSED---QNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       219 h~~~V~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      +...|..+.|+|.   +..|+.=+.|+++++||+....
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            3446778899984   5889899999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.23  E-value=11  Score=36.09  Aligned_cols=194  Identities=13%  Similarity=0.139  Sum_probs=86.7

Q ss_pred             CCCEEEEEE-CCCcEEEEEcCC----cceeeeeee---cC----cceeEEEecCCC-eEEEe--eCC----CcEEEEEcc
Q 047728          231 DQNLLYSAS-WDKTFKVWRTSD----YKCLESVIA---HD----DAVNSIVAGFDG-LVFTG--SAD----GTVKVWRRE  291 (474)
Q Consensus       231 ~~~~l~s~s-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~v~~~~~~-~l~~~--~~d----g~i~iwd~~  291 (474)
                      +.++|+..+ ..+.|+|+|+.+    .+..+.+..   +.    .....+...|+| .++++  ..+    |-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456676666 778999999973    334444432   11    223344556777 55553  222    346666654


Q ss_pred             cCCCceeeeeeeeee---cccccEEEEEEcCCCCEEEEEcC--------------------CCcEEEeecCcccccceee
Q 047728          292 LQGKGTKHFFSQTLL---KQECAVTALAISPDAAIVYCGSS--------------------DGLVNFWERELNLSHGGVL  348 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~--------------------dg~i~v~d~~~~~~~~~~~  348 (474)
                      +...      .....   .....-..+-+.|..+.+++..-                    ..++.+||+.+.+..+.+-
T Consensus       166 tf~v------~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id  239 (461)
T PF05694_consen  166 TFEV------KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID  239 (461)
T ss_dssp             T--E------EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred             cccc------cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence            3221      11111   11233556777888787777532                    3579999999887776655


Q ss_pred             eeccee-eEEEEe----cCCEEEEEe-CCCcEEEEEC-CCCceEE--EEeecCC-----------------ccceEEEEE
Q 047728          349 RGHKLA-ILCLVT----AGNLVFSGS-ADMSICIWRR-KENEHIC--LSMLTGH-----------------SGPVKCLAV  402 (474)
Q Consensus       349 ~~~~~~-v~~~~~----~~~~l~sgs-~dg~i~iwd~-~~~~~~~--~~~~~~h-----------------~~~v~~l~~  402 (474)
                      .+.... .+.+.+    +..+-++|+ -..+|..|-. ..++...  +..+..-                 ..-|++|.+
T Consensus       240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            554332 334433    334433333 3444544433 4443322  1222111                 234799999


Q ss_pred             eeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      +.|++.       +.+++=.+|.|+.||++....+
T Consensus       320 SlDDrf-------LYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  320 SLDDRF-------LYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             -TTS-E-------EEEEETTTTEEEEEE-SSTTS-
T ss_pred             ccCCCE-------EEEEcccCCcEEEEecCCCCCC
Confidence            999883       4556668999999999987555

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.93  E-value=5.3  Score=43.35  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=43.4

Q ss_pred             ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728          308 QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       308 ~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      +..++.+..+......+. +...+.+..|+.............+...    ..++..++++..||.+.+||...++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence            344455555444444333 4445666666655443333232222222    77899999999999999999988753

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.92  E-value=5  Score=41.16  Aligned_cols=120  Identities=12%  Similarity=0.090  Sum_probs=73.5

Q ss_pred             cEEEEEEcC--CCCEEEEEcCCCcEEEeecCccc--------------------ccceeeeecceeeEEEE--ecCCEEE
Q 047728          311 AVTALAISP--DAAIVYCGSSDGLVNFWERELNL--------------------SHGGVLRGHKLAILCLV--TAGNLVF  366 (474)
Q Consensus       311 ~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~--------------------~~~~~~~~~~~~v~~~~--~~~~~l~  366 (474)
                      .|+.|.+..  +...|+++..||.|.+|..+.-.                    .......+...+-+++.  ...++||
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            355555444  56688999999999999642110                    00111112333345554  4477888


Q ss_pred             EEeCCCcEEEEECCCC-ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          367 SGSADMSICIWRRKEN-EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +++....|.||-.... +......-..|...|-+|+|.++....  .+...|++++-.|.+.+|++.
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~--~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP--NGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCC--ccceEEEEEeccCcEEEEEEE
Confidence            8888888888866432 111111112356679999999886421  111478889999999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.89  E-value=3.7  Score=39.62  Aligned_cols=140  Identities=14%  Similarity=0.142  Sum_probs=85.1

Q ss_pred             CCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--------eEEEeeCCCcEEEEEcccCCCceeeee
Q 047728          231 DQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--------LVFTGSADGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       231 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~~~~  301 (474)
                      +..+|+ .|+....++-.|++.|+.+.....|..-  -+.+.|..        .-++|-++..|.-.|.+..+....   
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~---  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK---  552 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee---
Confidence            334443 4455566777899999999999887765  46677653        355677777777777775553111   


Q ss_pred             eeeeecccccEEEEEEcC----CCCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEEEeCCCcEE
Q 047728          302 SQTLLKQECAVTALAISP----DAAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFSGSADMSIC  375 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~sgs~dg~i~  375 (474)
                         .......++.-.|+.    ...++++++..|.|++||.-..... ..+.+  ....-+.++.+|+++++.+ ...+.
T Consensus       553 ---v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK-talP~lG~aIk~idvta~Gk~ilaTC-k~yll  627 (776)
T COG5167         553 ---VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK-TALPGLGDAIKHIDVTANGKHILATC-KNYLL  627 (776)
T ss_pred             ---eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhh-hcCcccccceeeeEeecCCcEEEEee-cceEE
Confidence               111122222223332    4568999999999999996433222 22222  2233356677888877666 44677


Q ss_pred             EEECC
Q 047728          376 IWRRK  380 (474)
Q Consensus       376 iwd~~  380 (474)
                      +-|+.
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            77764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.86  E-value=1  Score=39.30  Aligned_cols=64  Identities=11%  Similarity=0.166  Sum_probs=47.2

Q ss_pred             ecCCCCEEEEEECCCcEEEEEcCCcceeeee-------e-------ecCcceeEEEecCCCeEEEeeCCCcEEEEEcc
Q 047728          228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESV-------I-------AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRE  291 (474)
Q Consensus       228 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~  291 (474)
                      +..++++|++.+.+|.+++||+.+++.+..-       .       .....|..+.+..+|..++.-.+|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3446789999999999999999988765432       1       24467788888888844444566888888865

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.81  E-value=7.2  Score=37.16  Aligned_cols=171  Identities=11%  Similarity=0.102  Sum_probs=95.3

Q ss_pred             eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEE-EEEEcCCCCEEEEEcCCCcEE
Q 047728          257 SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVT-ALAISPDAAIVYCGSSDGLVN  334 (474)
Q Consensus       257 ~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~-~l~~~~~~~~l~~~~~dg~i~  334 (474)
                      .+......|..+-..||+..+..-...++.++++......... ......+ ....|+ .+..-..+.-+++++.||.|.
T Consensus       215 ~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rk-l~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs  293 (733)
T COG4590         215 LLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRK-LVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS  293 (733)
T ss_pred             hcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhh-hhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence            3444456677888899993222223378888887654332110 0000000 001122 122233566788899999988


Q ss_pred             Ee-ecCcccc-cceee---eecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          335 FW-ERELNLS-HGGVL---RGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       335 v~-d~~~~~~-~~~~~---~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      .| |.+.... .....   +-....+-.+.++  .+-+++-+..|++.++.....+......   --..+.-++++|.+.
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~~~Sp~~~  370 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcceeeeCcccc
Confidence            76 5543322 11111   1122334444443  4567778888999888765554322211   223567789999988


Q ss_pred             cccccceEEEEEecCCCcEEEEEccCCCCCCCC
Q 047728          408 SLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS  440 (474)
Q Consensus       408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~  440 (474)
                              +|++- +.|.|+++.+++..+....
T Consensus       371 --------~Ll~e-~~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         371 --------YLLSE-DQGKIRLAQLENRNPEISW  394 (733)
T ss_pred             --------hheee-cCCceEEEEecCCCCCccH
Confidence                    66664 4578999999987665443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.77  E-value=20  Score=37.93  Aligned_cols=157  Identities=10%  Similarity=-0.000  Sum_probs=82.7

Q ss_pred             cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-
Q 047728          243 TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-  320 (474)
Q Consensus       243 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-  320 (474)
                      .|++++-.  .....+.... .++....+.+. .++.++.++.+...++.....     ........+..|.|+.++|- 
T Consensus       471 ~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-----~e~~~~~~e~evaCLDisp~~  542 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGGL-----REVSHKEFEYEVACLDISPLG  542 (1096)
T ss_pred             cEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccce-----eeeeeheecceeEEEecccCC
Confidence            36666643  2333333322 33333333344 777788888888777765431     12233344677999999983 


Q ss_pred             --CC---EEEEEcCCCcEEEeecC-ccccccee-ee----ecceeeEEEEecCCEEEEEeCCCcEEEEECC--CCceEEE
Q 047728          321 --AA---IVYCGSSDGLVNFWERE-LNLSHGGV-LR----GHKLAILCLVTAGNLVFSGSADMSICIWRRK--ENEHICL  387 (474)
Q Consensus       321 --~~---~l~~~~~dg~i~v~d~~-~~~~~~~~-~~----~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~--~~~~~~~  387 (474)
                        .+   ++++|..+..+.+.-.. ........ +.    +...-..++--+..+|.++..||.+.-|-+.  +++..-.
T Consensus       543 d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~  622 (1096)
T KOG1897|consen  543 DAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR  622 (1096)
T ss_pred             CCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc
Confidence              22   78888877665543221 11111111 11    1112224455567899999999999877554  3332111


Q ss_pred             EeecCCccceEEEEEeeCCc
Q 047728          388 SMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       388 ~~~~~h~~~v~~l~~~~~~~  407 (474)
                      ....--..|+.=-.|+....
T Consensus       623 Kk~~lGt~P~~Lr~f~sk~~  642 (1096)
T KOG1897|consen  623 KKVTLGTQPISLRTFSSKSR  642 (1096)
T ss_pred             cccccCCCCcEEEEEeeCCc
Confidence            11122344555555655544

>PLN02193 nitrile-specifier protein

Probab=91.77  E-value=15  Score=36.50  Aligned_cols=69  Identities=6%  Similarity=-0.028  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCC----CcEEEeecCcccccceee----eecceeeEEEEecCCEEEEEeCC--------------CcEEEE
Q 047728          320 DAAIVYCGSSD----GLVNFWERELNLSHGGVL----RGHKLAILCLVTAGNLVFSGSAD--------------MSICIW  377 (474)
Q Consensus       320 ~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sgs~d--------------g~i~iw  377 (474)
                      ++++++.++.+    ..+.+||+.+..-.....    ........+...++++++.|+.+              ..+.+|
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~  407 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL  407 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence            56677777655    458889987653221110    01111223344567777777753              247889


Q ss_pred             ECCCCceEEEE
Q 047728          378 RRKENEHICLS  388 (474)
Q Consensus       378 d~~~~~~~~~~  388 (474)
                      |..+.+...+.
T Consensus       408 D~~t~~W~~~~  418 (470)
T PLN02193        408 DTETLQWERLD  418 (470)
T ss_pred             EcCcCEEEEcc
Confidence            99888765443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.75  E-value=1.8  Score=41.57  Aligned_cols=78  Identities=14%  Similarity=0.056  Sum_probs=53.6

Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE----EEecC-------------C-C--eEE
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS----IVAGF-------------D-G--LVF  277 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~----v~~~~-------------~-~--~l~  277 (474)
                      .....+.+|+.+|++++.++...=|.|.++|+.++..++.+++-.+.-..    ..-..             . .  +++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            34456889999999988888777799999999999888877764332111    11000             1 1  355


Q ss_pred             EeeCCCcEEEEEcccCCC
Q 047728          278 TGSADGTVKVWRRELQGK  295 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~~~~  295 (474)
                      -+-.-|.|.||.++.+.+
T Consensus       385 yaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             EeccCCeEEEEecCCCCE
Confidence            566788899999876543

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=91.70  E-value=16  Score=36.70  Aligned_cols=248  Identities=9%  Similarity=0.095  Sum_probs=114.8

Q ss_pred             CCEEEEeeCCCcEEEEeCCccc----cccccC-ccCEEEEEec-CC--EEEEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728          120 GDLLYTGSDSKNIRVWKNQREF----SGFKSN-SGLVKAIVIS-NE--KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT  191 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~~----~~~~~h-~~~V~~i~~~-~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  191 (474)
                      ++.++.+.++|.+........-    ...-+. .....++.+- ++  +|+.|+.-|.=.++.+..........+     
T Consensus       222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-----  296 (504)
T PF10433_consen  222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-----  296 (504)
T ss_dssp             SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred             CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-----
Confidence            6688889999988877533211    111111 3334455554 55  899998877666666653322221111     


Q ss_pred             cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC----CC------EEEEEE---CCCcEEEEEcCCcceee--
Q 047728          192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED----QN------LLYSAS---WDKTFKVWRTSDYKCLE--  256 (474)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~----~~------~l~s~s---~dg~i~iwd~~~~~~~~--  256 (474)
                                                ..-++|.++++.+.    ..      .|++++   .+|.+++..-  |-...  
T Consensus       297 --------------------------~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~  348 (504)
T PF10433_consen  297 --------------------------PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGL  348 (504)
T ss_dssp             ------------------------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--
T ss_pred             --------------------------cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceee
Confidence                                      14457777777531    12      566664   5678888742  22222  


Q ss_pred             e--eeec--CcceeEEEecCC-C-eEEEeeCCCcEEEEEccc-CCCcee-eeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          257 S--VIAH--DDAVNSIVAGFD-G-LVFTGSADGTVKVWRREL-QGKGTK-HFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       257 ~--~~~~--~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      .  ....  -..++.+..... + +++.... ..-+++.+.. ...... ......+......+.+-.+.  +..++=.+
T Consensus       349 ~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt  425 (504)
T PF10433_consen  349 ELASSELPGVTGIWTLKLSSSDHSYLVLSFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT  425 (504)
T ss_dssp             EEEEEEESTEEEEEEE-SSSSSBSEEEEEES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE
T ss_pred             eeeccCCCCceEEEEeeecCCCceEEEEEcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe
Confidence            1  1111  233444444331 2 4554444 4445555531 000000 00000112222223333332  34444444


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec---CCccceEEEEEee
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT---GHSGPVKCLAVEK  404 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~  404 (474)
                      .. .|++.+.................+.+.+.++.+++.+..++.+.++.+............   .....|.|+...|
T Consensus       426 ~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  426 PK-GIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SS-EEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             cC-eEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            33 377777665544433333455667777778888888888999999998776532111111   1456788887765

...

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.68  E-value=1.5  Score=38.30  Aligned_cols=71  Identities=10%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE----e-ec-------CCccceEEEEEeeCCccccccceEEEEEec
Q 047728          354 AILCLVTAGNLVFSGSADMSICIWRRKENEHICLS----M-LT-------GHSGPVKCLAVEKDDESLSREKRWILYSGS  421 (474)
Q Consensus       354 ~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~----~-~~-------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s  421 (474)
                      .+..+..++++|++-+.+|.+++||+.+.+.....    . +.       .....|..+.+..+|.        -|++-+
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--------PiV~ls   85 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--------PIVTLS   85 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--------EEEEEe
Confidence            45557788999999999999999999987632111    0 11       3556788899988887        455544


Q ss_pred             CCCcEEEEEccC
Q 047728          422 LDKSVKMWRVSE  433 (474)
Q Consensus       422 ~Dg~i~vw~~~~  433 (474)
                       +|..+.|+..-
T Consensus        86 -ng~~y~y~~~L   96 (219)
T PF07569_consen   86 -NGDSYSYSPDL   96 (219)
T ss_pred             -CCCEEEecccc
Confidence             57788887654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.34  E-value=13  Score=35.17  Aligned_cols=198  Identities=14%  Similarity=0.182  Sum_probs=105.9

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEec----CCC---eEEEeeC-C---CcEEEEEcccCCCcee
Q 047728          230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG----FDG---LVFTGSA-D---GTVKVWRRELQGKGTK  298 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~----~~~---~l~~~~~-d---g~i~iwd~~~~~~~~~  298 (474)
                      |...+|+....++-+.+||+. |+.+..+.  .+.++.+...    -.+   -|++++. +   ..|++|.+........
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            456788888888899999985 55566553  2334433321    123   2444443 2   4699998864221110


Q ss_pred             eee--eeeeecccccEEEEEEc--C-CCC-EEEEEcCCCcEEEeecCcc---cc----cceeeeecceeeEEEEecCCEE
Q 047728          299 HFF--SQTLLKQECAVTALAIS--P-DAA-IVYCGSSDGLVNFWERELN---LS----HGGVLRGHKLAILCLVTAGNLV  365 (474)
Q Consensus       299 ~~~--~~~~~~~~~~v~~l~~~--~-~~~-~l~~~~~dg~i~v~d~~~~---~~----~~~~~~~~~~~v~~~~~~~~~l  365 (474)
                      ...  ...+......+..+|+-  + ++. ++++...+|.+..|.+...   ..    +..+.......-+.+.....+|
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL  222 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence            000  00111222346777764  3 344 6666788899988877532   11    1111112222233344456799


Q ss_pred             EEEeCCCcEEEEECCCC---ceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          366 FSGSADMSICIWRRKEN---EHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~---~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.|-++--|.-|+.+..   ....+....+  ....|-.|++.....    ...++|+|.-.+++..||+....
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~----g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD----GKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC----C-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC----CCeEEEEEcCCCCeEEEEecCCC
Confidence            99999988888887622   2222333322  456788888876432    23457888888999999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.19  E-value=5.5  Score=38.67  Aligned_cols=26  Identities=4%  Similarity=-0.071  Sum_probs=21.4

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEE
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVW  247 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iw  247 (474)
                      .|..+..++.|..++-.+.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            57788889999999999999966654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.10  E-value=7.7  Score=37.04  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=68.9

Q ss_pred             ceeEEEecCCCeEEEeeC------------CC-cEEEEEcccC-CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC
Q 047728          264 AVNSIVAGFDGLVFTGSA------------DG-TVKVWRRELQ-GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS  329 (474)
Q Consensus       264 ~v~~v~~~~~~~l~~~~~------------dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  329 (474)
                      ....|+|.++|.|+++..            .+ .|.+++-... ++..+   ...+...-.....+++.+++  |+++..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~---~~vfa~~l~~p~Gi~~~~~G--lyV~~~   89 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK---SNVFAEELSMVTGLAVAVGG--VYVATP   89 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce---eEEeecCCCCccceeEecCC--EEEeCC
Confidence            456788888885555532            23 5666653321 21111   11222223456889999888  444555


Q ss_pred             CCcEEEeecCccc-------ccceeee------ecceeeEEEEecCCEEEEEeCC-------------------CcEEEE
Q 047728          330 DGLVNFWERELNL-------SHGGVLR------GHKLAILCLVTAGNLVFSGSAD-------------------MSICIW  377 (474)
Q Consensus       330 dg~i~v~d~~~~~-------~~~~~~~------~~~~~v~~~~~~~~~l~sgs~d-------------------g~i~iw  377 (474)
                      ....++.|.....       .+...+.      .|...-+.+.++|.+.++-+..                   |.|.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            4433344543211       1111111      2334457777888776654421                   445556


Q ss_pred             ECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          378 RRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       378 d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      +..+.+..  ..-.++ .....++|++++.
T Consensus       170 ~pdg~~~e--~~a~G~-rnp~Gl~~d~~G~  196 (367)
T TIGR02604       170 NPDGGKLR--VVAHGF-QNPYGHSVDSWGD  196 (367)
T ss_pred             ecCCCeEE--EEecCc-CCCccceECCCCC
Confidence            66555422  112232 3457899999987

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.48  E-value=6.2  Score=42.85  Aligned_cols=31  Identities=19%  Similarity=0.286  Sum_probs=26.0

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      .....++|+|..++++.++.+|.|+++-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3456789999999999999999999996543

>PRK13684 Ycf48-like protein; Provisional

Probab=90.23  E-value=16  Score=34.28  Aligned_cols=154  Identities=9%  Similarity=-0.022  Sum_probs=77.1

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEE-EcCCcceeeee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVW-RTSDYKCLESV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      ...+.++.+.+++.+++++ ..|.+..- | ..++.-..+ ..-...++++.+.+++.++..+..|.+++=..+.+.. .
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s-W  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES-W  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCc-c
Confidence            3467889999987665554 45655432 2 122222222 2234678889999888555556677765321221111 1


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--eecceeeEEEE-ecCCEEEEEeCCCcE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL--RGHKLAILCLV-TAGNLVFSGSADMSI  374 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~-~~~~~l~sgs~dg~i  374 (474)
                      .. ...........+..+.+.+++..+++ +.+|.+.. ....+..-....  ..-......+. .+++..+..+..|.|
T Consensus       249 ~~-~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i  325 (334)
T PRK13684        249 SK-PIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL  325 (334)
T ss_pred             cc-ccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence            10 00110112345788999998776654 45665543 333332221111  11111222222 244555666678888


Q ss_pred             EEEEC
Q 047728          375 CIWRR  379 (474)
Q Consensus       375 ~iwd~  379 (474)
                      .-|+-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            77753

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.89  E-value=14  Score=33.09  Aligned_cols=101  Identities=15%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             eeEEEecCCC--eEEEeeCCCc-EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEe
Q 047728          265 VNSIVAGFDG--LVFTGSADGT-VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFW  336 (474)
Q Consensus       265 v~~v~~~~~~--~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~  336 (474)
                      -..|+++|..  -++.+-.-|+ ..++|..........    .........-.-.|+|||.+|++.-.|     |.|-||
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~----~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL----VSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE----ecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence            3456667665  3444444444 567777654431111    001111112234699999999976443     679999


Q ss_pred             ecCcccccceeeeecceee--EEEEecCCEEEEEe
Q 047728          337 ERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGS  369 (474)
Q Consensus       337 d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs  369 (474)
                      |.+........+..|...-  +.+..||+.++.+.
T Consensus       146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            9987766655555554333  66778999888764

>PRK10115 protease 2; Provisional

Probab=89.74  E-value=29  Score=36.38  Aligned_cols=194  Identities=9%  Similarity=0.019  Sum_probs=96.1

Q ss_pred             CeeEEEecCCCCEEEEEEC-----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCC-----CcEEEEE
Q 047728          222 AISSLSMSEDQNLLYSASW-----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSAD-----GTVKVWR  289 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~d-----g~i~iwd  289 (474)
                      .+..+.++|++++|+.+..     ...|++.|+.+++.+.......  -..++|.+|+ .| ++...+     ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999998876532     3458889998886433222111  1458999887 44 443322     2455566


Q ss_pred             cccCCCceeeeeeeeeecccccEE-EEEEcCCCCEEEEEcC---CCcEEEeecCcccccceeeeecc-eeeEEEEecCCE
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVT-ALAISPDAAIVYCGSS---DGLVNFWERELNLSHGGVLRGHK-LAILCLVTAGNL  364 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~  364 (474)
                      +.+.......    .+........ .+..+.++++++..+.   ++.+.+|+..........+..+. .....+...+..
T Consensus       206 lgt~~~~d~l----v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (686)
T PRK10115        206 IGTPASQDEL----VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHR  281 (686)
T ss_pred             CCCChhHCeE----EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCE
Confidence            6544221111    1111112222 3333447776655443   35688888532211111111111 111222222333


Q ss_pred             EEEEeCC----CcEEEEECC-CCceEEEEeecCC-c-cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          365 VFSGSAD----MSICIWRRK-ENEHICLSMLTGH-S-GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       365 l~sgs~d----g~i~iwd~~-~~~~~~~~~~~~h-~-~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ++.-+..    ..|...++. .++.   ..+..+ . ..|..+.+..+ .        ++++...+|.-+++-+..
T Consensus       282 ly~~tn~~~~~~~l~~~~~~~~~~~---~~l~~~~~~~~i~~~~~~~~-~--------l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        282 FYLRSNRHGKNFGLYRTRVRDEQQW---EELIPPRENIMLEGFTLFTD-W--------LVVEERQRGLTSLRQINR  345 (686)
T ss_pred             EEEEEcCCCCCceEEEecCCCcccC---eEEECCCCCCEEEEEEEECC-E--------EEEEEEeCCEEEEEEEcC
Confidence            3333322    234444444 2221   223333 2 36778888733 3        778888888877776653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.68  E-value=2.1  Score=40.58  Aligned_cols=162  Identities=12%  Similarity=0.073  Sum_probs=95.4

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee-ee-eecCc----cee-EEEecCCC-eEEEeeCCCcEEEE-E
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE-SV-IAHDD----AVN-SIVAGFDG-LVFTGSADGTVKVW-R  289 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~-~~~~~----~v~-~v~~~~~~-~l~~~~~dg~i~iw-d  289 (474)
                      -...|..+-..||++.++.-+. .++.++++.+..... .+ ....+    .|+ .+.....+ .++++..||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            4456778888999999988765 778888876533211 11 11111    122 11112234 68889999999887 5


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS  369 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs  369 (474)
                      .+.... ........+.-....+..+.-..+.+-+++-+..|++.++.....+...............+++.+.++++-.
T Consensus       298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~  376 (733)
T COG4590         298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED  376 (733)
T ss_pred             eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence            554332 1111122222223344444433455667778888888887654443332222233556788999999888654


Q ss_pred             CCCcEEEEECCCCc
Q 047728          370 ADMSICIWRRKENE  383 (474)
Q Consensus       370 ~dg~i~iwd~~~~~  383 (474)
                       .|.|+++.+++..
T Consensus       377 -~gki~~~~l~Nr~  389 (733)
T COG4590         377 -QGKIRLAQLENRN  389 (733)
T ss_pred             -CCceEEEEecCCC
Confidence             5789999887765

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=89.24  E-value=34  Score=36.56  Aligned_cols=175  Identities=17%  Similarity=0.123  Sum_probs=99.1

Q ss_pred             EEEEEcCCcceeeeeeecCc----ceeEEEecCCC---eEEEee-----------CCCcEEEEEcccCCCceeeeeeeee
Q 047728          244 FKVWRTSDYKCLESVIAHDD----AVNSIVAGFDG---LVFTGS-----------ADGTVKVWRRELQGKGTKHFFSQTL  305 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~~~~~----~v~~v~~~~~~---~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~  305 (474)
                      |++.|..+++.+..+....+    .+.++.|+...   .++++.           .+|.++.|++-..+.  +.. ....
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--~le-llh~  931 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--KLE-LLHK  931 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc--eee-eeec
Confidence            67777766665554432222    34455555443   233332           245577776654333  110 1111


Q ss_pred             ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec-ceeeEEEEecCCEEEEEeCCCcEEEE--ECCCC
Q 047728          306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH-KLAILCLVTAGNLVFSGSADMSICIW--RRKEN  382 (474)
Q Consensus       306 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sgs~dg~i~iw--d~~~~  382 (474)
                      ..-.+.|  .++.|-..++++| ....+++||+...+.+.+....+ ...|..+...+..+++|...-.+.++  +...+
T Consensus       932 T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen  932 TEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred             cCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCC
Confidence            1222333  4556655566644 56789999998776554443333 56678888889999999877666654  44444


Q ss_pred             ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.. +..-..-...|+++.+-..+.         +|.+..=|.+.+-++...
T Consensus      1009 ~l~-~fadD~~pR~Vt~~~~lD~~t---------vagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1009 QLI-VFADDPVPRHVTALELLDYDT---------VAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             eEE-EEeCCCccceeeEEEEecCCc---------eeeccccCcEEEEECCCc
Confidence            422 222222334678887776664         777777777777766543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.02  E-value=3.1  Score=34.82  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=31.5

Q ss_pred             cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..|..++|+|.|-  ..+++.+|++...++.|.||.-...
T Consensus        86 ~~vv~~aWSP~Gl--~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGL--GPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCC--CCCCceEEEEEcCCCeEEEEecCCC
Confidence            3799999999874  3556779999999999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.60  E-value=19  Score=32.77  Aligned_cols=209  Identities=12%  Similarity=0.092  Sum_probs=114.2

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcC------Cc-ceeeeeee-----cCcceeEEEecCCC-------------eE
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTS------DY-KCLESVIA-----HDDAVNSIVAGFDG-------------LV  276 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~v~~~~~~-------------~l  276 (474)
                      .-+.|+++|.+.+-++....+...+||..      .. .++.++..     .....+.+.|+...             .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35789999998888888888999999986      12 22333321     12356666665321             46


Q ss_pred             EEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcC--CCCEEEEE-cCCCcEEEeecCcccccc-eeeeec
Q 047728          277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISP--DAAIVYCG-SSDGLVNFWERELNLSHG-GVLRGH  351 (474)
Q Consensus       277 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~--~~~~l~~~-~~dg~i~v~d~~~~~~~~-~~~~~~  351 (474)
                      +.+++||+|.-|................-.. ....-..+++..  .+.+|+.+ -..++|.+||-.-..... .-+..-
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            8889999999998543322100001111111 122334566654  35555554 567899999865332110 000000


Q ss_pred             -----ce--ee--------EEEE---ecCCEEEEEeCCCcEEEEECCCCceEEEEee--cCCccceEEEEEeeCCccccc
Q 047728          352 -----KL--AI--------LCLV---TAGNLVFSGSADMSICIWRRKENEHICLSML--TGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       352 -----~~--~v--------~~~~---~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~  411 (474)
                           -.  .|        +.+.   ++...=+.|..-|.|-+||....-   +..+  .+.-..-+.|+..|..-.  .
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l---~~r~as~g~LNaPWG~a~APa~FG--~  258 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL---LRRVASSGRLNAPWGLAIAPESFG--S  258 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcE---EEEeccCCcccCCceeeeChhhhC--C
Confidence                 00  00        0111   112222334445789999987543   3333  344455677887664210  1


Q ss_pred             cceEEEEEecCCCcEEEEEccCCC
Q 047728          412 EKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      -...+|+---.||+|..+|..++.
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCc
Confidence            111177777789999999988764

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=15  Score=35.18  Aligned_cols=104  Identities=11%  Similarity=0.091  Sum_probs=67.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee----eeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL----ESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~  294 (474)
                      ..++|.++.|++|.+.|++--.+++|.+++....+..    .+.+.....|...+|.....++.....| +-+|-.....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh
Confidence            5669999999999999999999999999987433222    2223334457888888665555444433 4555433222


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      .     .......+...|.-..|.++.+.++.++
T Consensus       144 r-----slRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  144 R-----SLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             h-----hhhhhhhcccCccEEEEccccceEeeec
Confidence            2     1334455666777788888777554443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.39  E-value=3.8  Score=38.42  Aligned_cols=107  Identities=16%  Similarity=0.098  Sum_probs=58.1

Q ss_pred             ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceee-eeeeeeecccccEEEEEEcCC---CCEEEEEcCC---------
Q 047728          264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH-FFSQTLLKQECAVTALAISPD---AAIVYCGSSD---------  330 (474)
Q Consensus       264 ~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~d---------  330 (474)
                      ..+.|+|.|++.++++...|.|++++.. +...... ...............++++|+   ..+|++....         
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            3578999999977778889999999832 1110111 111223445678899999994   3444443331         


Q ss_pred             CcEEEeecCcc-------ccccee-----eeecceeeEEEEecCCEEEEEeCC
Q 047728          331 GLVNFWERELN-------LSHGGV-----LRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       331 g~i~v~d~~~~-------~~~~~~-----~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ..|.-|.....       +.+...     ...|....+.|.++|.+.++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            13333433322       111111     124777778899999766665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.30  E-value=23  Score=36.28  Aligned_cols=151  Identities=10%  Similarity=-0.021  Sum_probs=75.3

Q ss_pred             ecCcEEEEEEc-CCEEEEeeCCCcEEEEeCCcccccc-----ccCccCEEEEEecCCEEEEEeCCCeEEE-EecCCCCcc
Q 047728          109 EEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQREFSGF-----KSNSGLVKAIVISNEKIFSGHQDGKIRV-WKVSSKDAS  181 (474)
Q Consensus       109 h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~~~~~-----~~h~~~V~~i~~~~~~l~s~~~dg~i~v-wd~~~~~~~  181 (474)
                      ..+.+..+.|+ ..-|+.-..+|+++||+.-.+....     ......|..+.+..+-++.-..+|.+.+ -++......
T Consensus        82 ~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~  161 (829)
T KOG2280|consen   82 KHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLR  161 (829)
T ss_pred             cCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhh
Confidence            44578899998 6678888999999999855333222     2222233333333233333333443333 233221111


Q ss_pred             eeeeecccCccceeeeeecCCCCeEEEee--------------ec--cceeeeccCCeeEEEecCCCCEEEEEECCCcEE
Q 047728          182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRR--------------HR--NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFK  245 (474)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  245 (474)
                      ....+...........+.-.+.....+..              ..  ...+..-...+..+.++|+.++|+--..+|.|.
T Consensus       162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~  241 (829)
T KOG2280|consen  162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIW  241 (829)
T ss_pred             hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEE
Confidence            11111111111111111111111000000              00  001111234577888999999999999999999


Q ss_pred             EEEcCCcceeeeee
Q 047728          246 VWRTSDYKCLESVI  259 (474)
Q Consensus       246 iwd~~~~~~~~~~~  259 (474)
                      +-+....++...+.
T Consensus       242 ~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  242 VVSIDLSQILCEFN  255 (829)
T ss_pred             EEecchhhhhhccC
Confidence            99887766666554

>PRK13684 Ycf48-like protein; Provisional

Probab=88.27  E-value=23  Score=33.32  Aligned_cols=152  Identities=10%  Similarity=0.087  Sum_probs=78.9

Q ss_pred             CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728          262 DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       262 ~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                      ...+.++.+.+++.++..+..|.+..- .+....  .  ...........++.+.+.++++.++++ ..|.+.+=..+.+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~--t--W~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT--A--WTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC--e--EEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence            456788899998866666666755431 111111  1  111222345678999999998877765 5576653223333


Q ss_pred             cccceeeee---cceeeE--EEEecCCEEEEEeCCCcEEEEECCCCce-EEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          342 LSHGGVLRG---HKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       342 ~~~~~~~~~---~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      ..-.....+   ....+.  .+.+++.. +.++.+|.|.. ....++. ..+.....-....+.+.|..++.        
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~--------  315 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK--------  315 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc--------
Confidence            221111111   111233  34445554 44555776553 3444332 11111122234578888887766        


Q ss_pred             EEEEecCCCcEEEEE
Q 047728          416 ILYSGSLDKSVKMWR  430 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~  430 (474)
                      .+ ..+..|.|-.|+
T Consensus       316 ~~-~~G~~G~il~~~  329 (334)
T PRK13684        316 GF-VLGQRGVLLRYV  329 (334)
T ss_pred             eE-EECCCceEEEec
Confidence            44 456678887765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.16  E-value=20  Score=32.43  Aligned_cols=162  Identities=11%  Similarity=0.067  Sum_probs=91.0

Q ss_pred             ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       260 ~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                      +-...+.++.|+|+. .|++......-.++= ...+.....    .....-.....+.+..+++++++--.++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-t~~Gdlirt----iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL-TKEGDLIRT----IPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEE-ecCCceEEE----ecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            334559999999998 666666555554542 222221111    11112334556777778888887777888888765


Q ss_pred             Ccccccceee----------e-ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCc-eEEEEeecCCc-------cceEE
Q 047728          339 ELNLSHGGVL----------R-GHKLAILCLVTAGNLVFSGSADMSICIWRRKENE-HICLSMLTGHS-------GPVKC  399 (474)
Q Consensus       339 ~~~~~~~~~~----------~-~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~~~h~-------~~v~~  399 (474)
                      ..........          + ...-.-+++.+....|+.+-+-.-+.||.+.... .........+.       ..|.+
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            5432111110          1 1112236777778888888888888888775332 11111111221       24667


Q ss_pred             EEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.|.+....       +|+-+.+++.+.-.+...
T Consensus       238 l~~~~~~~~-------LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         238 LEFNAITNS-------LLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ceecCCCCc-------EEEEecCCceEEEEecCC
Confidence            777765553       666666777666666543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.77  E-value=22  Score=32.67  Aligned_cols=152  Identities=12%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             ecCcceeEEEecCCCeEEEeeCCCcE-EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          260 AHDDAVNSIVAGFDGLVFTGSADGTV-KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       260 ~~~~~v~~v~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                      .-...+..+.-.+++.+++.+..|.+ .-||.-...      -..........|..+.|.|++.+.+++ ..|.|++=+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc------ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            34567888888899955555555554 567643111      122333356789999999998876655 8888888762


Q ss_pred             -Cccccccee---eeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceE-EEEeecCCccceEEEEEeeCCccccc
Q 047728          339 -ELNLSHGGV---LRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHI-CLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       339 -~~~~~~~~~---~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                       .........   .......++.+.+  ++...++| ..|.+ +...+.++.- .......-...+..+.|..+.+    
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~----  288 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK----  288 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE----
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc----
Confidence             211111110   1112223455554  44555544 45544 3444444421 1111223345688999987765    


Q ss_pred             cceEEEEEecCCCcEEEE
Q 047728          412 EKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw  429 (474)
                          -++ -+.+|.|--|
T Consensus       289 ----gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  289 ----GFV-LGQDGVLLRY  301 (302)
T ss_dssp             ----EEE-E-STTEEEEE
T ss_pred             ----eEE-ECCCcEEEEe
Confidence                344 4567876554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.70  E-value=9.5  Score=41.41  Aligned_cols=79  Identities=19%  Similarity=0.231  Sum_probs=55.2

Q ss_pred             ecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc-------eee------------eeeeeeecccccEEEEEEcCC
Q 047728          260 AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG-------TKH------------FFSQTLLKQECAVTALAISPD  320 (474)
Q Consensus       260 ~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~------------~~~~~~~~~~~~v~~l~~~~~  320 (474)
                      ...-.|+++....+|.++.++.||  .+|.+......       .+.            .+......+..+|..++++..
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            345678899988888888888888  55554321110       000            011111255779999999999


Q ss_pred             CCEEEEEcCCCcEEEeecCc
Q 047728          321 AAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       321 ~~~l~~~~~dg~i~v~d~~~  340 (474)
                      .+.+++-++.|.|.+||+..
T Consensus       254 R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cceeeeeccCceEEEEEccC
Confidence            99999999999999999876

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.54  E-value=24  Score=32.86  Aligned_cols=23  Identities=9%  Similarity=0.013  Sum_probs=15.2

Q ss_pred             CCCCEEEEEcCCC----cEEEeecCcc
Q 047728          319 PDAAIVYCGSSDG----LVNFWERELN  341 (474)
Q Consensus       319 ~~~~~l~~~~~dg----~i~v~d~~~~  341 (474)
                      .++++.+.|+.++    .+.+||.++.
T Consensus       170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       170 LQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             ECCEEEEEcCCCCccccceEEEecCCC
Confidence            3567777777654    2567887765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.27  E-value=14  Score=35.99  Aligned_cols=32  Identities=22%  Similarity=0.468  Sum_probs=24.9

Q ss_pred             cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..|..++..+..+        +|++...+|.|++|++..+
T Consensus       190 ~~I~~v~~d~~r~--------~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRR--------LLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTT--------EEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcC--------EEEEEeCCCcEEEEEEeCC
Confidence            3488888888877        8999999999999999863

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.06  E-value=3.9  Score=24.36  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=27.5

Q ss_pred             CCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEe
Q 047728          230 EDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVA  270 (474)
Q Consensus       230 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~  270 (474)
                      |++++|+++. .+++|.++|..+++.+..+... .....+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            4677676655 5789999999998888877653 33344443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.03  E-value=13  Score=29.20  Aligned_cols=107  Identities=11%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             EEecCCCCEEEEEECCCcEEEEEcCCc--------ceeeeeeecCcceeEEEecC---CC--eEEEeeCCCcEEEEEccc
Q 047728          226 LSMSEDQNLLYSASWDKTFKVWRTSDY--------KCLESVIAHDDAVNSIVAGF---DG--LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       226 l~~~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~v~~~~---~~--~l~~~~~dg~i~iwd~~~  292 (474)
                      -.|......|++++.-+.|.|++....        ..+..+. -...|++++..+   +.  -++.-+....|..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence            355566668888999999999986533        2333343 366788886443   22  334444567789999875


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcC----CCCEEEEEcCCCcEEEeecCcc
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISP----DAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                      ...       ...+.-...|.++.+-.    ...+++ .+.+..|.-||.+..
T Consensus        83 N~d-------~Fyke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   83 NSD-------LFYKEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGN  127 (136)
T ss_pred             Cch-------hhhhhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCc
Confidence            432       22233345677776643    233333 334455666665543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.69  E-value=7.3  Score=42.23  Aligned_cols=166  Identities=16%  Similarity=0.253  Sum_probs=87.4

Q ss_pred             ECCCcEEEEEcCCcceeeeeeecCcceeEEEec-CC-C-------eEEEeeCCCcEEEEEcccCCCceee-ee--eeeee
Q 047728          239 SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG-FD-G-------LVFTGSADGTVKVWRRELQGKGTKH-FF--SQTLL  306 (474)
Q Consensus       239 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-~~-~-------~l~~~~~dg~i~iwd~~~~~~~~~~-~~--~~~~~  306 (474)
                      +-|+.+.+|+.+++.....+.+-...|..+..- |. |       .++.-..--.|.++-+......... .+  .....
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            458899999999987777777766666665432 21 1       3444444555666544322111100 00  11222


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC  386 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~  386 (474)
                      .....|.++....+|+.+++| .||  .+|.+.....-. . .+......|++        .+.-..+.=|        .
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~g-W-f~~rc~Kiclt--------~s~ls~lvPs--------~  234 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDG-W-FGSRCRKICLT--------KSVLSSLVPS--------L  234 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCc-h-hhcccccccCc--------hhHHHHhhhh--------h
Confidence            335568888877788877755 455  444432111100 0 00001111111        1000000000        0


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ......+..+|..++......        ++++-+..|+|++|++..
T Consensus       235 ~~~~~~~~dpI~qi~ID~SR~--------IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDNSRN--------ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEeccccc--------eeeeeccCceEEEEEccC
Confidence            111135677899999887776        899999999999999987

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=86.65  E-value=31  Score=33.08  Aligned_cols=16  Identities=6%  Similarity=0.221  Sum_probs=10.2

Q ss_pred             EEEEecCCEEEEEeCC
Q 047728          356 LCLVTAGNLVFSGSAD  371 (474)
Q Consensus       356 ~~~~~~~~~l~sgs~d  371 (474)
                      .++..++++++.|+..
T Consensus       338 ~av~~~~~iyv~GG~~  353 (376)
T PRK14131        338 VSVSWNNGVLLIGGET  353 (376)
T ss_pred             EEEEeCCEEEEEcCCC
Confidence            3555667777777753

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.45  E-value=4.7  Score=40.96  Aligned_cols=37  Identities=30%  Similarity=0.684  Sum_probs=28.3

Q ss_pred             CeeEEEecC----CCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          222 AISSLSMSE----DQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       222 ~V~~l~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      .+..+++..    +..+|++.+.|+++|+||+.+++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            445555555    6789999999999999999999996655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.36  E-value=23  Score=31.37  Aligned_cols=138  Identities=16%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC-C--CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728          244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-D--GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      -.+||+.+.+....-....-...+-.+.+|| ++.+|+. +  ..+++++......................-.....-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            3568887765432211112222333567888 6666654 2  3478887543111111111111133444555666778


Q ss_pred             CCCEEEEEcCCCc-EEEeecCcc-cccce--ee-------eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728          320 DAAIVYCGSSDGL-VNFWERELN-LSHGG--VL-------RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       320 ~~~~l~~~~~dg~-i~v~d~~~~-~~~~~--~~-------~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ||+.|+.|+.... ..+|..... .....  .+       ...--+.+-+.|+|++++.+..+  -.|||..+.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~  200 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNT  200 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCe
Confidence            9999999988753 344543221 11111  11       11223457778899999988865  4566887765

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.07  E-value=0.1  Score=49.39  Aligned_cols=141  Identities=11%  Similarity=0.065  Sum_probs=89.5

Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .....|-+.+.-++.++.+..|..||- .++.+..+. ..+....++|..++  .++.+-..+.+.+||+......    
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq----  110 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ----  110 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH----
Confidence            334567777767888888999999984 344444332 24455667787777  5667778899999998754321    


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCC
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADM  372 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg  372 (474)
                        +...+....-.-+.|++....++.+...|.+.+|+..+.+... ....|...++++... .++.+.++.|.
T Consensus       111 --qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~RRgtq~av~lEd~vil~dcd~  180 (615)
T KOG2247|consen  111 --QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQRRGTQIAVTLEDYVILCDCDN  180 (615)
T ss_pred             --HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hhcccccceeEEEecccceeeecCcHH
Confidence              1111111122227888888899999999999999987665432 222266666666554 44555555443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=85.84  E-value=25  Score=31.39  Aligned_cols=114  Identities=9%  Similarity=-0.027  Sum_probs=65.1

Q ss_pred             cceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          263 DAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       263 ~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      .....+.+..++ ++-+.+.-|  .|+.+|+.+++......+     ....--..++.. +++.....-.++...+||..
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-----PPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE------TTT--EEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-----CccccceeEEEE-CCEEEEEEecCCeEEEEccc
Confidence            345677786677 556666666  588888886553222111     111122233333 33444445678899999998


Q ss_pred             cccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728          340 LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      +-+....+.....+  ..+..+++.|+.......|+++|..+.+.
T Consensus       119 tl~~~~~~~y~~EG--WGLt~dg~~Li~SDGS~~L~~~dP~~f~~  161 (264)
T PF05096_consen  119 TLKKIGTFPYPGEG--WGLTSDGKRLIMSDGSSRLYFLDPETFKE  161 (264)
T ss_dssp             TTEEEEEEE-SSS----EEEECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred             cceEEEEEecCCcc--eEEEcCCCEEEEECCccceEEECCcccce
Confidence            76655444333333  44447888888888888999999877653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.74  E-value=31  Score=32.21  Aligned_cols=67  Identities=13%  Similarity=0.151  Sum_probs=37.3

Q ss_pred             CCCEEEEEcC-----CCcEEEeecCcccccce-eeee-cceeeEEEEecCCEEEEEeCCC----cEEEEECCCCceEE
Q 047728          320 DAAIVYCGSS-----DGLVNFWERELNLSHGG-VLRG-HKLAILCLVTAGNLVFSGSADM----SICIWRRKENEHIC  386 (474)
Q Consensus       320 ~~~~l~~~~~-----dg~i~v~d~~~~~~~~~-~~~~-~~~~v~~~~~~~~~l~sgs~dg----~i~iwd~~~~~~~~  386 (474)
                      ++++.+.|+.     ...+..||+.+..-... .+.. ......+...++++.+.|+.++    .+.+||..+.+...
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~  200 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK  200 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence            4566666664     23578888876532211 0111 1122233455677777787654    35688988876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=85.36  E-value=37  Score=32.87  Aligned_cols=146  Identities=18%  Similarity=0.252  Sum_probs=80.9

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC----CCC
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE----DQN  233 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~  233 (474)
                      .+.|++|+..|.++||+............-+                            ..-..+|..+..-.    ...
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE----------------------------~~l~~PILqv~~G~F~s~~~~   88 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE----------------------------TQLKDPILQVECGKFVSGSED   88 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEE----------------------------EecCCcEEEEEeccccCCCCc
Confidence            4689999999999999985543221100000                            01234555554432    122


Q ss_pred             EEEEEECCCcEEEEEcCC--cc-------eeeeeeecC--cceeEEEecCCC------eEEEeeCCCcEEEEEcccCCCc
Q 047728          234 LLYSASWDKTFKVWRTSD--YK-------CLESVIAHD--DAVNSIVAGFDG------LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       234 ~l~s~s~dg~i~iwd~~~--~~-------~~~~~~~~~--~~v~~v~~~~~~------~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      ..++.-.-..+.||.+..  +.       .+..+..|.  .....+++.+-|      .+.+-+-||.+.+|+-+...  
T Consensus        89 ~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--  166 (418)
T PF14727_consen   89 LQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--  166 (418)
T ss_pred             ceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--
Confidence            223334456677776621  11       222333333  223333333221      78889999999999865221  


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                          + .......--.-.+++.+....|++++.+..+..|..
T Consensus       167 ----f-~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  167 ----F-SRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ----E-EEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence                1 111112223345788888889999999989998864

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.82  E-value=17  Score=28.55  Aligned_cols=107  Identities=18%  Similarity=0.133  Sum_probs=60.0

Q ss_pred             eEEEeeCCCcEEEEEcccCCCcee-eeeeeeeecccccEEEEEEcC-----CCCEEEEEcCCCcEEEeecCcccccceee
Q 047728          275 LVFTGSADGTVKVWRRELQGKGTK-HFFSQTLLKQECAVTALAISP-----DAAIVYCGSSDGLVNFWERELNLSHGGVL  348 (474)
Q Consensus       275 ~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  348 (474)
                      .|++++.-|+|.|++......... ......+..-...|++|+-.+     +...|+.|+. ..+..||+..+..+....
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke   90 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE   90 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence            788888899999998764332111 111223334455677776544     3456666654 579999998775543322


Q ss_pred             eecceeeEEEE---e-cCCEEEEEeCCCcEEEEECCCCc
Q 047728          349 RGHKLAILCLV---T-AGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       349 ~~~~~~v~~~~---~-~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      .......+.+-   . ...++++|+ +..|.-||.+..+
T Consensus        91 ~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e  128 (136)
T PF14781_consen   91 VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNE  128 (136)
T ss_pred             CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcE
Confidence            22222222221   1 234444444 6677778777655

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.73  E-value=16  Score=35.61  Aligned_cols=139  Identities=14%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-------EEEEEcCCCcEEEeecCccccccee
Q 047728          275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-------IVYCGSSDGLVNFWERELNLSHGGV  347 (474)
Q Consensus       275 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~~~~~dg~i~v~d~~~~~~~~~~  347 (474)
                      .+..|.....++--|++.+..      ......+...  -+.|.|..+       .-++|-++..|.-.|.+-.......
T Consensus       482 i~~dg~~~~kLykmDIErGkv------veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKV------VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             EEecCCCcccceeeeccccee------eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            444556666666666665432      2333333332  456666321       2233555666666665533211111


Q ss_pred             ee-----ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728          348 LR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       348 ~~-----~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      ..     +.............++++++..|.|++||.-..+  ....+.+....|..+....+|..       +|+||  
T Consensus       554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~-------ilaTC--  622 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKH-------ILATC--  622 (776)
T ss_pred             eeehhccccccccccccccCceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcE-------EEEee--
Confidence            10     1111112223357799999999999999986554  34466777889999999999983       56665  


Q ss_pred             CCcEEEEEcc
Q 047728          423 DKSVKMWRVS  432 (474)
Q Consensus       423 Dg~i~vw~~~  432 (474)
                      ...+.+-|+.
T Consensus       623 k~yllL~d~~  632 (776)
T COG5167         623 KNYLLLTDVP  632 (776)
T ss_pred             cceEEEEecc
Confidence            3456666654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.85  E-value=31  Score=33.76  Aligned_cols=110  Identities=14%  Similarity=0.145  Sum_probs=62.0

Q ss_pred             CcceeEEEecCCCeEEEeeC-CCcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCC------CEEEEEc-----
Q 047728          262 DDAVNSIVAGFDGLVFTGSA-DGTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDA------AIVYCGS-----  328 (474)
Q Consensus       262 ~~~v~~v~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~------~~l~~~~-----  328 (474)
                      -...+.|+|.|++.+++.-. .|.|++++...........+..... ........|+++|+-      .+|++..     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            44568999999996666666 6999999754322111111111111 246778999999874      3455442     


Q ss_pred             -----CCCcEEEeecCcc----cccceee------eecceeeEEEEecCCEEEEEeCC
Q 047728          329 -----SDGLVNFWERELN----LSHGGVL------RGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       329 -----~dg~i~v~d~~~~----~~~~~~~------~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                           ....|.-|.+...    .....++      ..|...-+.|.++|.+.++.+..
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1233444544311    0011111      24667778899999876655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.36  E-value=42  Score=31.91  Aligned_cols=139  Identities=17%  Similarity=0.260  Sum_probs=79.4

Q ss_pred             CcEEEEEcC--Ccceeeeeee-------cCcceeEEEec--C-CC--eEEEeeCCCcEEEEEcccCCCce-eeeeeeeee
Q 047728          242 KTFKVWRTS--DYKCLESVIA-------HDDAVNSIVAG--F-DG--LVFTGSADGTVKVWRRELQGKGT-KHFFSQTLL  306 (474)
Q Consensus       242 g~i~iwd~~--~~~~~~~~~~-------~~~~v~~v~~~--~-~~--~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~  306 (474)
                      .+|++|.+.  ++. +..+..       ....++.+|.-  + ++  ++++...+|.+..|.+....... ...+.+.+ 
T Consensus       127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-  204 (381)
T PF02333_consen  127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-  204 (381)
T ss_dssp             -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-
T ss_pred             CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-
Confidence            468888764  332 222221       12345667653  3 34  77788899999999987544432 22233333 


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-ceee---ee--c--ceeeEEEEe--cC-CEEEEEe-CCCcE
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-GGVL---RG--H--KLAILCLVT--AG-NLVFSGS-ADMSI  374 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~---~~--~--~~~v~~~~~--~~-~~l~sgs-~dg~i  374 (474)
                      .-...+..+..+.....|+.+-++.-|.-|+.+..... ...+   .+  .  ...-+++-.  ++ .||++.+ .+++.
T Consensus       205 ~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  205 KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            34557999999999999999999988888887633211 1111   11  1  112244433  33 3555444 67899


Q ss_pred             EEEECCCC
Q 047728          375 CIWRRKEN  382 (474)
Q Consensus       375 ~iwd~~~~  382 (474)
                      .||+.+..
T Consensus       285 ~Vy~r~~~  292 (381)
T PF02333_consen  285 AVYDREGP  292 (381)
T ss_dssp             EEEESSTT
T ss_pred             EEEecCCC
Confidence            99999754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=83.04  E-value=34  Score=30.61  Aligned_cols=111  Identities=20%  Similarity=0.105  Sum_probs=66.6

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEE-cCCcceee-eeeec--CcceeEEEecCCC-eEEEe---eCCCcEEEEEcccC
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWR-TSDYKCLE-SVIAH--DDAVNSIVAGFDG-LVFTG---SADGTVKVWRRELQ  293 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~-~~~~~--~~~v~~v~~~~~~-~l~~~---~~dg~i~iwd~~~~  293 (474)
                      .+..-.|.+++...+....+...+++. ..+++... .+...  ...|..+.++||| .++..   ..++.|.+=-+...
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            566778888877766666666667663 23332221 12111  1289999999999 44333   34577777766544


Q ss_pred             CCceeee---eeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          294 GKGTKHF---FSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       294 ~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      .......   ...........+..++|.+++.+++.+...+.
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence            4331111   12222233568999999999988877766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13613 lipoprotein LpqB; Provisional

Probab=82.64  E-value=46  Score=34.06  Aligned_cols=148  Identities=17%  Similarity=0.155  Sum_probs=76.2

Q ss_pred             cEEEEEEcCCCCEEEEEcCCC-cEEEeecCcccc----cceeeeecceeeEEEEecCCEEEEEeC--CC--cEEEEECCC
Q 047728          311 AVTALAISPDAAIVYCGSSDG-LVNFWERELNLS----HGGVLRGHKLAILCLVTAGNLVFSGSA--DM--SICIWRRKE  381 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~l~sgs~--dg--~i~iwd~~~  381 (474)
                      .+.+.+.++++..++....++ .+++..+..+..    ....+.+....--+|..++ .+.+...  ++  .+++..- .
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~  441 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D  441 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence            678899999999888877666 455544332222    1123333333334444445 4555422  22  2555543 4


Q ss_pred             CceEEEEeecCCcc-ceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728          382 NEHICLSMLTGHSG-PVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY  459 (474)
Q Consensus       382 ~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  459 (474)
                      ++...+... ...+ .|..+.+++|+-..      .++.. ...+.|.|=-+.....-.........+..--..+.++  
T Consensus       442 G~~~~V~~~-~l~g~~I~~lrvSrDG~Rv------Avv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~--  512 (599)
T PRK13613        442 GEPVEVRTP-ELDGHRVVAVRVARDGVRV------ALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDM--  512 (599)
T ss_pred             CcEEEeecc-ccCCCEeEEEEECCCccEE------EEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCcccee--
Confidence            443322222 2333 79999999999732      22222 2335666666554322211111222222222236777  


Q ss_pred             CCCCCcCCceee
Q 047728          460 APSFSSQGRICQ  471 (474)
Q Consensus       460 ~p~~s~Dg~~l~  471 (474)
                        +|..|+++++
T Consensus       513 --~W~~~~sL~V  522 (599)
T PRK13613        513 --SWAGDSQLVV  522 (599)
T ss_pred             --EEcCCCEEEE
Confidence              6777888877

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=81.77  E-value=86  Score=34.34  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=89.3

Q ss_pred             eEEEeeC---------CCcEEEEEccc----CC-Cceeeeeee-eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          275 LVFTGSA---------DGTVKVWRREL----QG-KGTKHFFSQ-TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       275 ~l~~~~~---------dg~i~iwd~~~----~~-~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      ++++|..         -|.+.|+|+-.    ++ ...+..+.. ......+.|..++= -+|.++.  +....|.+|+++
T Consensus      1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~l~~--~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGHLLS--SQGQKIIVRKLD 1124 (1366)
T ss_pred             eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccEEEE--ccCcEEEEEEec
Confidence            6776653         48899999643    11 112222222 22334566665553 2454443  344578999984


Q ss_pred             c-ccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec--CCccceEEEEEeeCCccccccceEE
Q 047728          340 L-NLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT--GHSGPVKCLAVEKDDESLSREKRWI  416 (474)
Q Consensus       340 ~-~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~  416 (474)
                      . ......-+..-...+.++..-.++|+.|..-..|.+.-....... +..+.  ...-.+.++.|--++..+      .
T Consensus      1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~r-lsL~srd~~~l~v~s~EFLVdg~~L------~ 1197 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYR-LSLLSRDFEPLNVYSTEFLVDGSNL------S 1197 (1366)
T ss_pred             cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceE-EEEeecCCchhhceeeeeEEcCCee------E
Confidence            3 333333333344445555556889999988788877666543221 22221  222357888888888755      8


Q ss_pred             EEEecCCCcEEEEEccCCC
Q 047728          417 LYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       417 l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ++.+..|+.|+++-.....
T Consensus      1198 flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1198 FLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred             EEEEcCCCcEEEEEeCCCC
Confidence            9999999999999876543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.63  E-value=14  Score=30.81  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=25.4

Q ss_pred             ccEEEEEEcCCC------CEEEEEcCCCcEEEeecCc
Q 047728          310 CAVTALAISPDA------AIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       310 ~~v~~l~~~~~~------~~l~~~~~dg~i~v~d~~~  340 (474)
                      ..+..++|+|.|      -+|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            379999999943      3788899999999997654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=81.34  E-value=1.1e+02  Score=35.07  Aligned_cols=293  Identities=16%  Similarity=0.234  Sum_probs=136.7

Q ss_pred             EEEcCCE-EEEeeCCCcEEEEeCCcccc----------ccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceee
Q 047728          116 LAAAGDL-LYTGSDSKNIRVWKNQREFS----------GFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHK  184 (474)
Q Consensus       116 ~~~~~~~-l~tgs~dg~v~vwd~~~~~~----------~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  184 (474)
                      ++++|.. +.++.+...+.+|+......          .+.+......+|.++++.|+++..+|.++.=++...+... .
T Consensus       445 v~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~drLFvADseGkLYsa~l~~~~~~~-~  523 (1774)
T PF11725_consen  445 VAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSNDRLFVADSEGKLYSADLPAAQDNE-P  523 (1774)
T ss_pred             ccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCCeEEEEeCCCCEEecccccccCCC-c
Confidence            3444665 66777777779997543311          1222334677888889999999999988877766543210 0


Q ss_pred             eecccCccc-eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CC-cE-EEEEcCCcceeeeeee
Q 047728          185 RVGTLPTFK-DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DK-TF-KVWRTSDYKCLESVIA  260 (474)
Q Consensus       185 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg-~i-~iwd~~~~~~~~~~~~  260 (474)
                      .+...+... ......+...      ..-.+.+.+..+.+.++.=+..|..-.+.-. ++ .+ -=|++..--.+..-.+
T Consensus       524 ~l~~~p~~~~~~~~~~~G~~------~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~G  597 (1774)
T PF11725_consen  524 KLKLMPEPAYQLLGSALGGD------HKVTGFISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRG  597 (1774)
T ss_pred             ceEecccccccccccccccc------ceeeccccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeEeeccCC
Confidence            000000000 0000000000      0000111122222333322222211111111 00 00 0144433222211111


Q ss_pred             cC-----cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee----------eeeeeecccccEEEEEEcCCCCEEE
Q 047728          261 HD-----DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF----------FSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       261 ~~-----~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      -.     .+-..+.+...|.+  |-.||.|..||-....-.....          -...+.-.++.|..+.+++...-++
T Consensus       598 L~~~~~p~~~~~ldl~r~G~v--~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~  675 (1774)
T PF11725_consen  598 LPKPPAPAPHEILDLGRAGLV--GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIA  675 (1774)
T ss_pred             CCCCCCCChHHhhccccccce--eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccc
Confidence            11     11122333444433  4457999999865322100000          0111222356677777777655554


Q ss_pred             EEcCCCcEEEeecCcccccceeeeec-ceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728          326 CGSSDGLVNFWERELNLSHGGVLRGH-KLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE  403 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~  403 (474)
                      -+.. ..+.+=-.++.......+.+- ...+.+|.. +++.+++....|.+.... ..+.+. .....+-.+.|..+++.
T Consensus       676 ~g~~-~~~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~-~l~~~gl~G~ik~l~lD  752 (1774)
T PF11725_consen  676 HGDN-NVFALPQRRNKVELGDALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPV-PLSRPGLSGEIKDLALD  752 (1774)
T ss_pred             cCCC-cccccccccCCCCCCccccCCCcCcceeEEEEcCCceEEeccCCcccccc-CCCCCc-cCCCCCCCcchhheeec
Confidence            4322 222222222222222222222 233445543 677888889999999998 555543 22344567899999999


Q ss_pred             eCCccccccceEEEEEecCCCcEEEE
Q 047728          404 KDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      .+..         |+.-..+|.++--
T Consensus       753 ~~~n---------L~Alt~~G~Lf~~  769 (1774)
T PF11725_consen  753 EKQN---------LYALTSTGELFRL  769 (1774)
T ss_pred             cccc---------eeEecCCCceeec
Confidence            8876         6666677866543

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.29  E-value=11  Score=38.25  Aligned_cols=69  Identities=17%  Similarity=0.270  Sum_probs=41.0

Q ss_pred             ecCCEEEEEeCCCcEEEEECCC----CceEEEEeecCC--------------------ccceEEEEEee----CCccccc
Q 047728          360 TAGNLVFSGSADMSICIWRRKE----NEHICLSMLTGH--------------------SGPVKCLAVEK----DDESLSR  411 (474)
Q Consensus       360 ~~~~~l~sgs~dg~i~iwd~~~----~~~~~~~~~~~h--------------------~~~v~~l~~~~----~~~~~~~  411 (474)
                      .+...++.+..||.+.......    +.......+..+                    .+.+..++++.    +..    
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  231 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT----  231 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT----
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC----
Confidence            3777888888999988887764    211111111111                    23455566655    444    


Q ss_pred             cceEEEEEecCCCcEEEEEccCCCC
Q 047728          412 EKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                          +|++.+.|+.+|+|++.++..
T Consensus       232 ----~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  232 ----FLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             ----EEEEEETTSEEEEEETTTTCE
T ss_pred             ----EEEEEeCCCeEEEEECCCCeE
Confidence                899999999999999998855

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.23  E-value=20  Score=35.06  Aligned_cols=31  Identities=23%  Similarity=0.538  Sum_probs=25.3

Q ss_pred             ccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728          310 CAVTALAISPDAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      ..|..++..+..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999999889999999999999999964

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	474
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-17
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-06
2h9l_A	329	Wdr5delta23 Length = 329		2e-12
2h9l_A	329	Wdr5delta23 Length = 329		1e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-11
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-10
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		9e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		6e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		7e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 162/376 (43%), Gaps = 45/376 (11%)
Query: 102 LIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVIS- 157
           L+ +L      ++ +A +  G  + + SD K +++W +N +       +S  V+ +  S 
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 158 -NEKIFSGHQDGKIRVWKVSSK---DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR-HR 212
             + I S   D  +++W  + +     + H        F+   +     S+   V+  +R
Sbjct: 232 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 213 NGLWIK----HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
           NG  ++    H  ++  ++ S D   + SAS DKT K+W   + + L+++  H  +V  +
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGV 350
Query: 269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG 327
               DG  + + S D TVK+W R  Q         QTL     +V  +A SPD   +   
Sbjct: 351 AFSPDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASA 403
Query: 328 SSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHI 385
           S D  V  W R   L     L GH  ++  +        + S S D ++ +W R      
Sbjct: 404 SDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--- 458
Query: 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            L  LTGHS  V+ +A   D ++++        S S DK+VK+W  + Q   L+ T    
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIA--------SASDDKTVKLWNRNGQ---LLQT---- 503
Query: 446 PLEGHGVAPNSLPYAP 461
            L GH  +   + ++P
Sbjct: 504 -LTGHSSSVRGVAFSP 518

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 109/246 (44%), Gaps = 32/246 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
           H  ++  ++ S D   + SAS DKT K+W   + + L+++  H  +V  +    DG  + 
Sbjct: 15  HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
           + S D TVK+W R  Q         QTL     +V  +A SPD   +   S D  V  W 
Sbjct: 74  SASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 338 RELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
           R   L     L GH  ++  +     G  + S S D ++ +W R       L  LTGHS 
Sbjct: 127 RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSS 181
Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455
            V  +A   D ++++        S S DK+VK+W  + Q   L+ T     L GH  +  
Sbjct: 182 SVWGVAFSPDGQTIA--------SASDDKTVKLWNRNGQ---LLQT-----LTGHSSSVR 225
Query: 456 SLPYAP 461
            + ++P
Sbjct: 226 GVAFSP 231

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 182 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 235
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 236 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 284

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 88  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 145
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 146 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 200 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 253
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 254 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 302

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 150
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 151 FDESVRIWDV 160

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 81  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 138
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 139 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 193 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 246
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 247 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 295

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 143
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 144 FDESVRIWDV 153

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 143
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 144 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 198 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 251
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 252 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 300

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 148
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 149 FDESVRIWDV 158

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 281

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 130 FDESVRIWDV 139

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 281

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 130 FDESVRIWDV 139

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 182 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 235
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 236 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 284

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 132
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 133 FDESVRIWDV 142

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 182 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 235
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 236 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 284

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 132
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 133 FDESVRIWDV 142

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 176 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 229
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 230 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 278

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 126
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 127 FDESVRIWDV 136

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 65  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 122
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 123 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 177 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 230
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 231 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 279

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 127
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 128 FDESVRIWDV 137

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 69  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 126
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 127 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 181 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 234
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 235 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 283

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 131
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 132 FDESVRIWDV 141

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 176 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 229
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 230 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 278

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 126
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 127 FDESVRIWDV 136

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 60  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 117
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 118 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 172 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 225
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 226 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 274

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 122
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 123 FDESVRIWDV 132

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 281

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 130 FDESVRIWDV 139

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 63  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 120
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +  GK  K     TL      V+A+  + D +++   S DGL   
Sbjct: 121 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 175 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 228
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 229 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 277

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 125
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 126 FDESVRIWDV 135

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 83/199 (41%), Gaps = 22/199 (11%)
Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL 292
           N + S S D T KVW     KCL +++ H   V S     D ++ +GS D T+KVW  E 
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE- 187
Query: 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK 352
            G+     +  T        T   +      V  GS D  +  W+ E       VL GH 
Sbjct: 188 TGECIHTLYGHT-------STVRCMHLHEKRVVSGSRDATLRVWDIETGQCL-HVLMGHV 239
Query: 353 LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSRE 412
            A+ C+   G  V SG+ D  + +W        CL  L GH+  V  L  +         
Sbjct: 240 AAVRCVQYDGRRVVSGAYDFMVKVW--DPETETCLHTLQGHTNRVYSLQFDGIH------ 291
Query: 413 KRWILYSGSLDKSVKMWRV 431
               + SGSLD S+++W V
Sbjct: 292 ----VVSGSLDTSIRVWDV 306

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +           +TL      V+A+  + D +++   S DGL   
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D ++ +W   + +  CL  
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNMVYIWNL--QTKEIVQKLQGH 281

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 130 FDESVRIWDV 139

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
           H   IS ++ S D NLL SAS DKT K+W  S  KCL+++  H + V      F+    L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
           + +GS D +V++W  +           +TL      V+A+  + D +++   S DGL   
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           W+     + G  L+         ++ +     G  + + + D  + +W   + +  CL  
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
            TGH     C+     + S++  K WI+ SGS D  V +W +  Q   +V   Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNMVYIWNL--QTKEIVQKLQGH 281

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
           TL     AV+++  SP+   +   S+D L+  W    +      + GHKL I  +   + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
            NL+ S S D ++ IW     +  CL  L GHS  V C                ++ SGS
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
            D+SV++W V
Sbjct: 130 FDESVRIWDV 139

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 53/287 (18%)
Query: 151 VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR 210
           V  +   ++KI SG +D  I++W                              N +E +R
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWD----------------------------KNTLECKR 167
Query: 211 HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA 270
              G    H  ++  L +  D+ ++ + S D T +VW  +  + L ++I H +AV  +  
Sbjct: 168 ILTG----HTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 271 GFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD 330
             +G++ T S D ++ VW        T     + L+    AV    +  D   +   S D
Sbjct: 222 N-NGMMVTCSKDRSIAVWD---MASPTDITLRRVLVGHRAAVNV--VDFDDKYIVSASGD 275
Query: 331 GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
             +  W           L GHK  I CL     LV SGS+D +I +W  +     CL +L
Sbjct: 276 RTIKVWNTS-TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--CLRVL 332
Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437
            GH   V+C+  +         KR  + SG+ D  +K+W +     P
Sbjct: 333 EGHEELVRCIRFDN--------KR--IVSGAYDGKIKVWDLVAALDP 369

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 43/251 (17%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
           H  ++ +    ED  ++  A  DK  +V+ + + K L  +  HD  V ++     G++ +
Sbjct: 120 HMTSVITCLQFEDNYVITGAD-DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC--GSSDGLVNFW 336
           GS D TV+VW  +++     H F          V  L I     I Y   GS D  ++ W
Sbjct: 179 GSTDRTVRVW--DIKKGCCTHVFE----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 337 ER----------------------ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSI 374
           +                       E N    GVLRGH  ++  +   GN+V SGS D ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Query: 375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434
            +W   + +  CL +L+GH+  +     + +       KR I  S S+D ++++W +  +
Sbjct: 293 IVWDVAQMK--CLYILSGHTDRIYSTIYDHE------RKRCI--SASMDTTIRIWDL--E 340
Query: 435 APPLVSTTQQH 445
              L+ T Q H
Sbjct: 341 NGELMYTLQGH 351

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 42/239 (17%)
Query: 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRR 290
           + N + + + DK  +V+ + + K L  +  HD  V ++     G++ +GS D TV+VW  
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW-- 188
Query: 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC--GSSDGLVNFWER---------- 338
           +++     H F          V  L I     I Y   GS D  ++ W+           
Sbjct: 189 DIKKGCCTHVFE----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 339 ------------ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC 386
                       E N    GVLRGH  ++  +   GN+V SGS D ++ +W   + +  C
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXK--C 302
Query: 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
           L +L+GH+  +     + +       KR I  S S D ++++W +  +   L  T Q H
Sbjct: 303 LYILSGHTDRIYSTIYDHE------RKRCI--SASXDTTIRIWDL--ENGELXYTLQGH 351

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 50/274 (18%)
Query: 101 VLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWK----------NQREFSGFKSN 147
           VL G++      + ++A      D++ + S  K+I +WK           QR  +G   +
Sbjct: 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG---H 429
Query: 148 SGLVKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY 205
           S  V+ +V+S++  F  SG  DG++R+W +++   S  + VG     KD +  +    N 
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTRRFVGHT---KDVLSVAFSLDNR 485
Query: 206 IEVRRHRN---GLWIK--------------HFDAISSLSMSED--QNLLYSASWDKTFKV 246
             V   R+    LW                H D +S +  S +  Q  + SASWDKT KV
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL 305
           W  S+ K   ++  H   V+++    DG L  +G  DG V +W      +G K +     
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL---AEGKKLYS---- 598
Query: 306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
           L+    + AL  SP+   + C +++  +  W+ E
Sbjct: 599 LEANSVIHALCFSPNRYWL-CAATEHGIKIWDLE 631

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 39/236 (16%)
Query: 115 SLAAAGDLLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVISNEKIFSGHQDGK 169
           S+   GD + + S  K I++W+ Q     + F+G +    +V+        I S   D  
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQT 257
Query: 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKC-SMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228
           +RVW V++K+         L   +  ++C S  P +               + +IS  + 
Sbjct: 258 VRVWVVATKECK-----AELREHRHVVECISWAPES--------------SYSSISEATG 298
Query: 229 SEDQN------LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA 281
           SE +        L S S DKT K+W  S   CL +++ HD+ V  ++    G  + + + 
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
           D T++VW  + + K       +TL   E  VT+L     A  V  GS D  V  WE
Sbjct: 359 DKTLRVW--DYKNKRC----MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 43/262 (16%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
           H D++  +S      LL S S D T K+W    ++C+ ++  HD  V+S+    +G  + 
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
           + S D T+K+W  E+Q      +  +T       V  +  + D  ++   S+D  V  W 
Sbjct: 209 SASRDKTIKMW--EVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 338 RELNLSHGGVLRGHKLAILCLVTA----------------------GNLVFSGSADMSIC 375
                     LR H+  + C+  A                      G  + SGS D +I 
Sbjct: 263 VATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435
           +W       +CL  L GH   V+ +      +         + S + DK++++W    + 
Sbjct: 322 MWDVSTG--MCLMTLVGHDNWVRGVLFHSGGK--------FILSCADDKTLRVWDYKNKR 371
Query: 436 PPLVSTTQQH---PLEGHGVAP 454
                   +H    L+ H  AP
Sbjct: 372 CMKTLNAHEHFVTSLDFHKTAP 393

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
           + S  QDGK+ +W     D+    +V  +P    ++  C+  PS NY+            
Sbjct: 70  LLSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
                     V R   G    H   +S     +D N + ++S D T  +W     +   +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
              H   V S+    D  +F +G+ D + K+W         +    QT    E  + A+ 
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
             P+      GS D     ++       +  SH  ++ G  +  +    +G L+ +G  D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
            +  +W   + +     +L GH   V CL V  D  +++        +GS D  +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
           + S  QDGK+ +W     D+    +V  +P    ++  C+  PS NY+            
Sbjct: 70  LLSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
                     V R   G    H   +S     +D N + ++S D T  +W     +   +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
              H   V S+    D  +F +G+ D + K+W         +    QT    E  + A+ 
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
             P+      GS D     ++       +  SH  ++ G  +  +    +G L+ +G  D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
            +  +W   + +     +L GH   V CL V  D  +++        +GS D  +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
           + S  QDGK+ +W     D+    +V  +P    ++  C+  PS NY+            
Sbjct: 70  LVSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
                     V R   G    H   +S     +D N + ++S D T  +W     +   +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
              H   V S+    D  +F +G+ D + K+W         +    QT    E  + A+ 
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
             P+      GS D     ++       +  SH  ++ G  +  +    +G L+ +G  D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
            +  +W   + +     +L GH   V CL V  D  +++        +GS D  +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
           + S  QDGK+ +W     D+    +V  +P    ++  C+  PS NY+            
Sbjct: 70  LVSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
                     V R   G    H   +S     +D N + ++S D T  +W     +   +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
              H   V S+    D  +F +G+ D + K+W         +    QT    E  + A+ 
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
             P+      GS D     ++       +  SH  ++ G  +  +    +G L+ +G  D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
            +  +W   + +     +L GH   V CL V  D  +++        +GS D  +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 53/296 (17%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
           + S  QDGK+ +W     D+    +V  +P    ++  C+  PS NY+            
Sbjct: 81  LVSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 135
Query: 207 -------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI 259
                   VR  R      H   +S     +D N + ++S D T  +W     +   +  
Sbjct: 136 NLKTREGNVRVSRE--LAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 260 AHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS 318
            H   V S+    D  +F +G+ D + K+W         +    QT    E  + A+   
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAICFF 246
Query: 319 PDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMS 373
           P+      GS D     ++       +  SH  ++ G  +  +    +G L+ +G  D +
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 304
Query: 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
             +W   + +     +L GH   V CL V  D  +++        +GS D  +K+W
Sbjct: 305 CNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 350

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 42/268 (15%)
Query: 102 LIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWKNQREFSGF-------KSNSGLV 151
           L G+L    G +  +A      D++ + S  K I +WK  R+ + +       + +S  V
Sbjct: 7   LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 152 KAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR 209
             +VIS++  F  SG  DG +R+W +++   +  + VG     KD +  +    N   V 
Sbjct: 67  SDVVISSDGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHT---KDVLSVAFSSDNRQIVS 122
Query: 210 RHRNG---LW------------IKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDY 252
             R+    LW              H + +S +  S + +  ++ S  WDK  KVW  ++ 
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311
           K   + I H   +N++    DG L  +G  DG   +W    +G   KH ++   L     
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-EG---KHLYT---LDGGDI 235
Query: 312 VTALAISPDAAIVYCGSSDGLVNFWERE 339
           + AL  SP+   + C ++   +  W+ E
Sbjct: 236 INALCFSPNRYWL-CAATGPSIKIWDLE 262

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 185 RVGTLPTFKDFI------------KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232
           ++ T P F D I            K +   +NY   +R   G    H   +S + +S D 
Sbjct: 20  QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG----HSHFVSDVVISSDG 75
Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE 291
               S SWD T ++W  +        + H   V S+    D   + +GS D T+K+W   
Sbjct: 76  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT- 134
Query: 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVL 348
               G   +  Q     E  V+ +  SP+++   IV CG  D LV  W    NL++  + 
Sbjct: 135 ---LGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGW-DKLVKVW----NLANCKLK 185
Query: 349 RGH-----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHI 385
             H      L  + +   G+L  SG  D    +W   E +H+
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 133/332 (40%), Gaps = 89/332 (26%)
Query: 120 GDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAI--VISNEKIFSGHQDGKIRVWKV 175
           G  L TG++ + IR+W  +N++     + +   + ++    S +K+ SG  D  +R+W +
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNL 234
                    R G         +CS+  S  IE             D ++++++S  D   
Sbjct: 195 ---------RTG---------QCSLTLS--IE-------------DGVTTVAVSPGDGKY 221
Query: 235 LYSASWDKTFKVWRTSDYKCL-------ESVIAHDDAVNSIVAGFDGL-VFTGSADGTVK 286
           + + S D+  +VW +     +       ES   H D+V S+V   DG  V +GS D +VK
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG 346
           +W   LQ    K   S+T     C VT +                               
Sbjct: 282 LW--NLQNANNKS-DSKTPNSGTCEVTYI------------------------------- 307
Query: 347 VLRGHKLAILCLVTAGN--LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404
              GHK  +L + T  N   + SGS D  +  W +K      L ML GH   V  +AV  
Sbjct: 308 ---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAV-A 361
Query: 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436
           +  SL  E   +  +GS D   ++W+  + AP
Sbjct: 362 NGSSLGPEYN-VFATGSGDCKARIWKYKKIAP 392

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 46/226 (20%)
Query: 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265
           I+V  H++   + H   +  +  S D   L +   +KT +V+R SD   L + ++ D A 
Sbjct: 53  IDVELHKS---LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAA 107
Query: 266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325
           N                            K  ++  + +    +  + ++  SPD   + 
Sbjct: 108 N----------------------------KDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139
Query: 326 CGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENE 383
            G+ D L+  W+ E N     +L+GH+  I  L    +G+ + SGS D ++ IW  +  +
Sbjct: 140 TGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
             C   L+   G V  +AV   D          + +GSLD++V++W
Sbjct: 199 --CSLTLSIEDG-VTTVAVSPGDGKY-------IAAGSLDRAVRVW 234

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 42/269 (15%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWKNQREFSGF-------KSNSGL 150
            L G+L    G +  +A      D++ + S  K I +WK  R+ + +       + +S  
Sbjct: 29  TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           V  +VIS++  F  SG  DG +R+W +++   +  + VG     KD +  +    N   V
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHT---KDVLSVAFSSDNRQIV 144
Query: 209 RRHRNG---LW------------IKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSD 251
              R+    LW              H + +S +  S + +  ++ S  WDK  KVW  ++
Sbjct: 145 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310
            K   + I H   +N++    DG L  +G  DG   +W    +G   KH ++   L    
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-EG---KHLYT---LDGGD 257
Query: 311 AVTALAISPDAAIVYCGSSDGLVNFWERE 339
            + AL  SP+   + C ++   +  W+ E
Sbjct: 258 IINALCFSPNRYWL-CAATGPSIKIWDLE 285

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 185 RVGTLPTFKDFI------------KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232
           ++ T P F D I            K +   +NY   +R   G    H   +S + +S D 
Sbjct: 43  QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG----HSHFVSDVVISSDG 98
Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE 291
               S SWD T ++W  +        + H   V S+    D   + +GS D T+K+W   
Sbjct: 99  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT- 157
Query: 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVL 348
               G   +  Q     E  V+ +  SP+++   IV CG  D LV  W    NL++  + 
Sbjct: 158 ---LGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCGW-DKLVKVW----NLANCKLK 208
Query: 349 RGH-----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHI 385
             H      L  + +   G+L  SG  D    +W   E +H+
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 50/260 (19%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
           H   +S +++S + N   SASWD + ++W   + +C    + H   V S+    D   + 
Sbjct: 66  HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
           +G  D  ++VW   ++G+   H  S+       +    + S DA ++  G  D LV  W+
Sbjct: 126 SGGRDNALRVW--NVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 338 RELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENE--------- 383
               L+ G +   L+GH   +  +  +  G+L  S   D    +W   + E         
Sbjct: 183 ----LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 384 ---HICLS-----MLTGHSGPVKCLAVEKDD--ESLSREKR-------------W----- 415
               IC S     M       ++   +E  D    L+ E +             W     
Sbjct: 239 PINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298
Query: 416 ILYSGSLDKSVKMWRVSEQA 435
            LYSG  D  +++W VSE A
Sbjct: 299 TLYSGYTDNVIRVWGVSENA 318

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 25/173 (14%)
Query: 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV--NSIVAGFDG 274
           I H   + SLS  +   ++ S SWDKT KVW+      + ++ AH+ +V    +V+  + 
Sbjct: 101 IGHQGNVCSLSFQD--GVVISGSWDKTAKVWKEG--SLVYNLQAHNASVWDAKVVSFSEN 156
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
              T SAD T+K+W+ +   K  K F           V  LA+  D   + C S+DGL+ 
Sbjct: 157 KFLTASADKTIKLWQND---KVIKTFSG----IHNDVVRHLAVVDDGHFISC-SNDGLIK 208
Query: 335 FWERELNLSHGGVLR---GHKLAILC--LVTAGNLVFSGSADMSICIWRRKEN 382
                ++   G VLR   GH+  + C  L+  G++V  G  D ++ IW  KEN
Sbjct: 209 L----VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIW-SKEN 255

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 233 NLLYSASWDKTFKVWRTS-DYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVW 288
            LL S   D+  ++W T  D    +SV++  H   V  +     G  + + S D T  +W
Sbjct: 29  TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 289 RRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWE--RELNLSHG 345
           +     K    F   T L+  E  V ++A +P   ++   S D  V  WE   E      
Sbjct: 89  K-----KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 346 GVLRGHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403
            VL  H   +  +V   +  L+ S S D ++ ++R +E++ +C + L GH   V  LA +
Sbjct: 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 404 KDDESLSREKRWILYSGSLDKSVKMWR 430
              + L+        S S D++V++WR
Sbjct: 204 PSGQRLA--------SCSDDRTVRIWR 222

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 315 LAISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLRGHKLAI--LCLVTAGNLVFSGSA 370
           LA +P   ++     D  +  W  E +  +    +  GH+  +  +     GN + S S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
           D + CIW++ +++  C++ L GH   VK +A              +L + S DKSV +W 
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--------LLATCSRDKSVWVWE 133
Query: 431 VSEQ 434
           V E+
Sbjct: 134 VDEE 137

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 128/316 (40%), Gaps = 47/316 (14%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
           VL G+L    G + SLA +    +LL + S  K +  WK   + ++F      FK +S +
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           V+   ++ +  +  S   D  +R+W V++ +   ++R     +    +    K S  I  
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGET--YQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 209 RRHR-----------------NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251
            R +                 +  W+     + +    +D   + SA  DK  K W  + 
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310
           ++     I H+  +N++ A  DG L+ +   DG + +W   L  K   +    TL  Q+ 
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW--NLAAKKAXY----TLSAQD- 238
Query: 311 AVTALAISPDAAIVYCGSSDGLVNF------WERELNLSHGGVLRGHKLAILCLVTA--G 362
            V +LA SP+   +   ++ G+  F         +L     G  +  +   + L  +  G
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 363 NLVFSGSADMSICIWR 378
             +F+G  D  I +W+
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
           VL G+L    G + SLA +    +LL + S  K +  WK   + ++F      FK +S +
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           V+   ++ +  +  S   D  +R+W V++ +           T++ F+            
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
                     H   + S+ + +  +++ S S DKT KVW T   +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
                  A  D + + +   D  VK W         +       +     +  L  SPD 
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
            ++     DG +  W
Sbjct: 209 TLIASAGKDGEIMLW 223

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
           H   +   +++ D     SASWDKT ++W  +  +  +  + H   V S+ +     ++ 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
           +GS D T+KVW  + Q          TLL     V+ + + P      D+  +    +D 
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
           +V  W    NL+   +     GH   I  L  +  G L+ S   D  I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
           VL G+L    G + SLA +    +LL + S  K +  WK   + ++F      FK +S +
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           V+   ++ +  +  S   D  +R+W V++ +           T++ F+            
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
                     H   + S+ + +  +++ S S DKT KVW T   +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
                  A  D + + +   D  VK W         +       +     +  L  SPD 
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
            ++     DG +  W
Sbjct: 209 TLIASAGKDGEIMLW 223

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
           H   +   +++ D     SASWDKT ++W  +  +  +  + H   V S+ +     ++ 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
           +GS D T+KVW  + Q          TLL     V+ + + P      D+  +    +D 
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
           +V  W    NL+   +     GH   I  L  +  G L+ S   D  I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
           VL G+L    G + SLA +    +LL + S  K +  WK   + ++F      FK +S +
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           V+   ++ +  +  S   D  +R+W V++ +           T++ F+            
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
                     H   + S+ + +  +++ S S DKT KVW T   +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
                  A  D + + +   D  VK W         +       +     +  L  SPD 
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
            ++     DG +  W
Sbjct: 209 TLIASAGKDGEIMLW 223

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
           H   +   +++ D     SASWDKT ++W  +  +  +  + H   V S+ +     ++ 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
           +GS D T+KVW  + Q          TLL     V+ + + P      D+  +    +D 
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
           +V  W    NL+   +     GH   I  L  +  G L+ S   D  I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
           VL G+L    G + SLA +    +LL + S  K +  WK   + ++F      FK +S +
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           V+   ++ +  +  S   D  +R+W V++ +           T++ F+            
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
                     H   + S+ + +  +++ S S DKT KVW T   +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
                  A  D + + +   D  VK W         +       +     +  L  SPD 
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
            ++     DG +  W
Sbjct: 209 TLIASAGKDGEIMLW 223

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
           H   +   +++ D     SASWDKT ++W  +  +  +  + H   V S+ +     ++ 
Sbjct: 64  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
           +GS D T+KVW  + Q          TLL     V+ + + P      D+  +    +D 
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
           +V  W    NL+   +     GH   I  L  +  G L+ S   D  I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
           VL G+L    G + SLA +    +LL + S  K +  WK   + ++F      FK +S +
Sbjct: 2   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
           V+   ++ +  +  S   D  +R+W V++ +           T++ F+            
Sbjct: 62  VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 99
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
                     H   + S+ + +  +++ S S DKT KVW T   +CL +++ H+D V+ +
Sbjct: 100 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 148
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
                  A  D + + +   D  VK W         +       +     +  L  SPD 
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 202
Query: 322 AIVYCGSSDGLVNFW 336
            ++     DG +  W
Sbjct: 203 TLIASAGKDGEIMLW 217

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
           H   +   +++ D     SASWDKT ++W  +  +  +  + H   V S+ +     ++ 
Sbjct: 58  HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
           +GS D T+KVW  + Q          TLL     V+ + + P      D+  +    +D 
Sbjct: 118 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
           +V  W    NL+   +     GH   I  L  +  G L+ S   D  I +W
Sbjct: 171 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 232 QNLLYSASWDKTFKVW--RTSDYKCLESV--IAHDDAVNSIVAG-FDGLVFTGSADGTVK 286
           Q +L + S D+  K+   +  D+  ++ +   AH  A+ S+       L+  GS D TV 
Sbjct: 24  QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83
Query: 287 VWRRELQGKGTKHFFSQTLLK----QECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342
           +W +E     T   F   LL      E  V  +A S D   +   S D  V  WE + + 
Sbjct: 84  IWAKEESADRT---FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140
Query: 343 SHG---GVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397
                  VL+ H   +  ++   +  L+ S S D ++ IW+  +++  C+++L GH G V
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200
Query: 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
                +K  E + R     L SGS D +V++W+
Sbjct: 201 WSSDFDK-TEGVFR-----LCSGSDDSTVRVWK 227

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
           V SGS D+++ +W   EN         GH   V C+A    D S          SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQH 445
           +VK+W + +  P    TT Q 
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQE 184

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
           V SGS D+++ +W   EN         GH   V C+A    D S          SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQH 445
           +VK+W + +  P    TT Q 
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQE 184

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 121/332 (36%), Gaps = 85/332 (25%)
Query: 120  GDLLYTGSDSKNIRVWKNQREFSG------------FKSNSGLVKAI-VISNEKIFSGHQ 166
            G    T SD + IRVW+ ++                F+ N  +V A+  I   ++ +G +
Sbjct: 901  GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG-K 959
Query: 167  DGKIRVW---KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223
             G+I      +VS    S H            IK    P+N    R   +G  + H  A+
Sbjct: 960  TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----RVFSSG--VGHKKAV 1013
Query: 224  SSLSMSEDQNLLYSASWDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA 281
              +  + D   L S+S D   +VW  +T DY  L+   AH + V       D  + + S 
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLLSWSF 1070
Query: 282  DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341
            DGTVKVW   + G+  + F        +  V + AIS DA      S+D     W  +L 
Sbjct: 1071 DGTVKVWNV-ITGRIERDFTCH-----QGTVLSCAISSDATKFSSTSADKTAKIWSFDL- 1123
Query: 342  LSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA 401
            LS                                           L  L GH+G V+C A
Sbjct: 1124 LSP------------------------------------------LHELKGHNGCVRCSA 1141
Query: 402  VEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
               D          +L +G  +  +++W VS+
Sbjct: 1142 FSLDG--------ILLATGDDNGEIRIWNVSD 1165

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 121/332 (36%), Gaps = 85/332 (25%)
Query: 120  GDLLYTGSDSKNIRVWKNQREFSG------------FKSNSGLVKAI-VISNEKIFSGHQ 166
            G    T SD + IRVW+ ++                F+ N  +V A+  I   ++ +G +
Sbjct: 894  GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG-K 952
Query: 167  DGKIRVW---KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223
             G+I      +VS    S H            IK    P+N    R   +G  + H  A+
Sbjct: 953  TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----RVFSSG--VGHKKAV 1006
Query: 224  SSLSMSEDQNLLYSASWDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA 281
              +  + D   L S+S D   +VW  +T DY  L+   AH + V       D  + + S 
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLLSWSF 1063
Query: 282  DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341
            DGTVKVW   + G+  + F        +  V + AIS DA      S+D     W  +L 
Sbjct: 1064 DGTVKVWNV-ITGRIERDFTCH-----QGTVLSCAISSDATKFSSTSADKTAKIWSFDL- 1116
Query: 342  LSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA 401
            LS                                           L  L GH+G V+C A
Sbjct: 1117 LSP------------------------------------------LHELKGHNGCVRCSA 1134
Query: 402  VEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
               D          +L +G  +  +++W VS+
Sbjct: 1135 FSLDG--------ILLATGDDNGEIRIWNVSD 1158

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
           V SGS D+++ +W   EN         GH   V C+A    D S          SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQ 444
           +VK+W + +  P    TT Q
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQ 183

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
           V SGS D+++ +W   EN         GH   V C+A    D S          SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQ 444
           +VK+W + +  P    TT Q
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQ 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	474
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.6
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.35
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.3
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.23
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.19
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.18
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.17
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.16
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.14
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.0
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.88
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.8
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.79
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.77
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.75
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.73
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.65
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.58
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.52
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.47
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.46
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.38
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.36
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.3
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.25
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.24
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.2
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.18
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.11
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.09
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.02
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.01
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.97
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.93
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.9
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.88
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.87
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.77
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.75
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.74
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.71
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.71
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.65
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.64
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.62
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.59
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.58
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.57
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.51
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.5
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.5
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.4
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.36
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.35
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.22
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.19
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.09
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.07
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.99
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.98
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.95
3ott_A	758	Two-component system sensor histidine kinase; beta	96.89
3ott_A	758	Two-component system sensor histidine kinase; beta	96.87
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.85
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.82
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.79
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.63
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.39
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.34
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.3
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.15
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.12
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.08
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.77
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.49
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	95.48
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.47
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.09
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.94
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.91
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.63
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.57
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.47
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.07
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	91.0
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	90.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.41
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	89.78
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	88.22
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.33
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.22
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	82.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	82.38
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	81.89
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	81.38

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-44  Score=368.25  Aligned_cols=385  Identities=16%  Similarity=0.188  Sum_probs=277.2

Q ss_pred             CCCCCCCCCCCcCccCCCCCCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----ccccc
Q 047728           71 SSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGF  144 (474)
Q Consensus        71 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~  144 (474)
                      .+..++++|................+.........+.+|.+.|++++|+  |++||+|+.||+|+|||...    ....+
T Consensus        20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~   99 (611)
T 1nr0_A           20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI   99 (611)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred             ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence            3444566776654443221111122333345677889999999998876  88999999999999999642    23467


Q ss_pred             ccCccCEEEEEec--CCEEEEEeCC----CeEEEEecCCCCcce------eeeecccCccce-eeeeecCCCCeEEEeee
Q 047728          145 KSNSGLVKAIVIS--NEKIFSGHQD----GKIRVWKVSSKDASI------HKRVGTLPTFKD-FIKCSMKPSNYIEVRRH  211 (474)
Q Consensus       145 ~~h~~~V~~i~~~--~~~l~s~~~d----g~i~vwd~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  211 (474)
                      .+|.+.|.+++|+  +++|++++.+    +.|++||........      ...+...+.... ++.+..  ...+.++..
T Consensus       100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~--D~~v~lwd~  177 (611)
T 1nr0_A          100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD--DNTVAIFEG  177 (611)
T ss_dssp             ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET--TSCEEEEET
T ss_pred             cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeC--CCeEEEEEC
Confidence            7899999999998  6688888765    478888754321111      111111122111 222222  222333332


Q ss_pred             c----cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-------ecCcceeEEEecCCC-eEEEe
Q 047728          212 R----NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-------AHDDAVNSIVAGFDG-LVFTG  279 (474)
Q Consensus       212 ~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~-~l~~~  279 (474)
                      .    ...+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.       +|.+.|.+++|+|++ +|+++
T Consensus       178 ~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  257 (611)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence            2    24567899999999999999999999999999999999999888874       799999999999999 89999


Q ss_pred             eCCCcEEEEEcccCCCceee-------------------------------------eeeeeeecccccEEEEEEcCCCC
Q 047728          280 SADGTVKVWRRELQGKGTKH-------------------------------------FFSQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       280 ~~dg~i~iwd~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~l~~~~~~~  322 (474)
                      +.|++|++||++........                                     .....+.+|...|++++|+|+++
T Consensus       258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence            99999999998754321100                                     01234567899999999999999


Q ss_pred             EEEEEcCCCcEEEeecCcccccceeee-----------------------------------------------------
Q 047728          323 IVYCGSSDGLVNFWERELNLSHGGVLR-----------------------------------------------------  349 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~-----------------------------------------------------  349 (474)
                      +|++++.|+.|++||+.++........                                                     
T Consensus       338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  417 (611)
T 1nr0_A          338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL  417 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence            999999999999999875432110000                                                     


Q ss_pred             ------------------------------ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEE
Q 047728          350 ------------------------------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKC  399 (474)
Q Consensus       350 ------------------------------~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~  399 (474)
                                                    ......++++|++++|++|+.|++|++||+.++....... .+|...|++
T Consensus       418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~  496 (611)
T 1nr0_A          418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS  496 (611)
T ss_dssp             EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE
T ss_pred             EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE
Confidence                                          0112345677899999999999999999998775433444 679999999


Q ss_pred             EEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ++|+|+++        +|++++.|++|++|++.+.....    ......+|...|.++    +|||||++|+++|
T Consensus       497 v~fspdg~--------~las~s~d~~v~~w~~~~~~~~~----~~~~~~~H~~~V~~v----~fspdg~~lasgs  555 (611)
T 1nr0_A          497 VAFSNNGA--------FLVATDQSRKVIPYSVANNFELA----HTNSWTFHTAKVACV----SWSPDNVRLATGS  555 (611)
T ss_dssp             EEECTTSS--------EEEEEETTSCEEEEEGGGTTEES----CCCCCCCCSSCEEEE----EECTTSSEEEEEE
T ss_pred             EEECCCCC--------EEEEEcCCCCEEEEEcCCCCcee----eeeeeeecccceeEE----EECCCCCEEEEEE
Confidence            99999999        99999999999999998732110    111234588999998    7888999998864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-44  Score=346.88  Aligned_cols=281  Identities=22%  Similarity=0.399  Sum_probs=248.5

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~  176 (474)
                      ...+.+|.+.|++++|+  +.+|++|+.||+|+|||..  +....+.+|.+.|.+++|+  +++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45688999999999987  7899999999999999954  5677889999999999998  6799999999999999998


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE  256 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  256 (474)
                      +.+...                                .+.+|...|.+++|+|++++|++|+.|++|++||++++.++.
T Consensus       181 ~~~~~~--------------------------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~  228 (410)
T 1vyh_C          181 GFECIR--------------------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK  228 (410)
T ss_dssp             SSCEEE--------------------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceeE--------------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            765431                                234599999999999999999999999999999999999999


Q ss_pred             eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC---------------
Q 047728          257 SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD---------------  320 (474)
Q Consensus       257 ~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------------  320 (474)
                      .+.+|...|.++.+++++ .+++|+.|+.|++||++...      ....+..|...|.+++|+|+               
T Consensus       229 ~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------eeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence            999999999999999999 89999999999999997654      34567789999999999996               


Q ss_pred             -----CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC
Q 047728          321 -----AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH  393 (474)
Q Consensus       321 -----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h  393 (474)
                           +.+|++|+.|+.|++||++++... ..+.+|...+.+  +++++++|++|+.|+.|++||+.+++  ++..+.+|
T Consensus       303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~--~~~~~~~h  379 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTLNAH  379 (410)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC--CCEEEECC
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCC
Confidence                 678999999999999999987655 456678877754  55679999999999999999998877  46788899


Q ss_pred             ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      ...|++++|+|++.        +|++|+.||+|++|+++
T Consensus       380 ~~~v~~l~~~~~~~--------~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          380 EHFVTSLDFHKTAP--------YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SSCEEEEEECSSSS--------CEEEEETTSEEEEEC--
T ss_pred             CCcEEEEEEcCCCC--------EEEEEeCCCcEEEEeCC
Confidence            99999999999998        89999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6e-44  Score=333.86  Aligned_cols=285  Identities=19%  Similarity=0.261  Sum_probs=249.3

Q ss_pred             cceeeeeeeeecCcEEEEEEc------CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec--CCEEEEEeC
Q 047728           99 PNVLIGSLVREEGHIYSLAAA------GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS--NEKIFSGHQ  166 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~------~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~--~~~l~s~~~  166 (474)
                      ...+++.+.+|++.|++++++      +++|+||+.|++|+||+...    ....+.+|...|.+++++  +..+++++.
T Consensus        21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~  100 (321)
T 3ow8_A           21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL  100 (321)
T ss_dssp             CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence            356667888999999999985      56999999999999999542    234578999999999998  568999999


Q ss_pred             CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728          167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      |++|++||+.+++...                                .+..|...+.+++|+|++++|++++.|+.|++
T Consensus       101 D~~i~lWd~~~~~~~~--------------------------------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i  148 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIK--------------------------------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI  148 (321)
T ss_dssp             TSEEEEEETTTTEEEE--------------------------------EEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred             CCcEEEEECCCCCEEE--------------------------------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence            9999999998875432                                22337778999999999999999999999999


Q ss_pred             EEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      ||+++++....+..|...|.+++|+|++ +|++|+.||.|++||++...      ....+..|...|.+++|+|++++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~spd~~~l~  222 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK------LLHTLEGHAMPIRSLTFSPDSQLLV  222 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCCCEEEECTTSCEEE
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------EEEEEcccCCceeEEEEcCCCCEEE
Confidence            9999999999999999999999999999 99999999999999997543      3556778999999999999999999


Q ss_pred             EEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728          326 CGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE  403 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~  403 (474)
                      +++.|+.|++||++..... ..+.+|...+.+  +++++.+|++|+.|+.|++||+.+++  ++..+.+|...|.+++|+
T Consensus       223 s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s  299 (321)
T 3ow8_A          223 TASDDGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT--CVHTFFDHQDQVWGVKYN  299 (321)
T ss_dssp             EECTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEC
T ss_pred             EEcCCCeEEEEECCCccee-EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE--EEEEEcCCCCcEEEEEEC
Confidence            9999999999999877554 566778877755  55689999999999999999999887  577889999999999999


Q ss_pred             eCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          404 KDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      |++.        +|++++.||.|+|||+.
T Consensus       300 ~~g~--------~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          300 GNGS--------KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTSS--------EEEEEETTCCEEEEECC
T ss_pred             CCCC--------EEEEEeCCCeEEEEeCC
Confidence            9998        89999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.5e-43  Score=330.39  Aligned_cols=286  Identities=19%  Similarity=0.330  Sum_probs=245.7

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      .....+|.+|.+.|++++++  +++|++|+.||+|+|||..  +.+..+..|...|.+++|+  +++|++|+.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567899999999999986  7899999999999999954  5667788899999999998  6799999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      ++.+.+......                            ..+.+|...|.++.|++++ .+++++.|++|++||+++++
T Consensus       125 ~~~~~~~~~~~~----------------------------~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~  175 (340)
T 1got_B          125 NLKTREGNVRVS----------------------------RELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             ETTTCSBSCEEE----------------------------EEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE
T ss_pred             ECccCCCcceeE----------------------------EEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc
Confidence            998764321110                            1345699999999999876 58999999999999999999


Q ss_pred             eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      ++..+.+|...|.+++|+|++ .+++|+.|+.|++||++...      ....+..|...|.+++|+|++++|++++.|+.
T Consensus       176 ~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence            999999999999999999999 89999999999999998654      35567789999999999999999999999999


Q ss_pred             EEEeecCcccccceeee-ec--ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728          333 VNFWERELNLSHGGVLR-GH--KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~-~~--~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  409 (474)
                      |++||++.......... .+  ....+++++++++|++|+.|+.|++||+.+.+  .+..+.+|.++|.+++|+|++.  
T Consensus       250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~s~dg~--  325 (340)
T 1got_B          250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGM--  325 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSS--
T ss_pred             EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc--EeeEeecCCCcEEEEEEcCCCC--
Confidence            99999987655432221 11  23346677889999999999999999998877  4678899999999999999998  


Q ss_pred             cccceEEEEEecCCCcEEEEE
Q 047728          410 SREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                            +|++|+.|+.|+|||
T Consensus       326 ------~l~s~s~D~~i~iWd  340 (340)
T 1got_B          326 ------AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------CEEEEETTSCEEEEC
T ss_pred             ------EEEEEcCCccEEecC
Confidence                  899999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-43  Score=333.37  Aligned_cols=284  Identities=20%  Similarity=0.217  Sum_probs=229.3

Q ss_pred             eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-----c--------cccccccCccCEEEEEec-CCEEEEEeCCCeEE
Q 047728          108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-----R--------EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIR  171 (474)
Q Consensus       108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-----~--------~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~  171 (474)
                      .|+..|.+++|+  |++|++++ |+++++||..     .        .......|...|.+++|+ ++.|++|+.||+|+
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~  106 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVE  106 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEE
Confidence            467779988876  88998887 7788888621     0        111223456789999998 67899999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      |||+++++.......                            .+.+|.+.|++++|+|++++|++|+.|++|++||+++
T Consensus       107 lWd~~~~~~~~~~~~----------------------------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B          107 LWELDENETLIVSKF----------------------------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EEEECTTSSCEEEEE----------------------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEeccCCCceeEeec----------------------------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999998876533221                            2346999999999999999999999999999999999


Q ss_pred             cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEc
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGS  328 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~  328 (474)
                      ++++..+.+|...|.+++|++++  +|++++.|+.|++||++......    ......+...+.+++|+| ++++|++|+
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS----QIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE----ECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee----eeecceeeccceeeeecCCCCcceEEec
Confidence            99999999999999999999987  78999999999999998665311    112234566799999999 567889999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeEEEE--ecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      .|+.|++||++++..+ ..+.+|...|.++.  +++ ++|++|+.|++|+|||+.+++   +..+.+|.+.|++++|+|+
T Consensus       235 ~dg~v~~wd~~~~~~~-~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~  310 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCV-LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPL  310 (344)
T ss_dssp             TTSEEEEEESCC--CC-EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEEEEEECSS
T ss_pred             cCCcEEEEECCCCcEE-EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCC
Confidence            9999999999987655 56678888776554  566 689999999999999999886   3467899999999999999


Q ss_pred             CccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          406 DESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      +..       +|++++.|++|++|++.+..
T Consensus       311 ~~~-------llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          311 NHS-------LLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             STT-------EEEEEETTSCEEEEECCC--
T ss_pred             CCe-------EEEEEcCCCeEEEEECCCCC
Confidence            864       78899999999999998753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.1e-42  Score=325.40  Aligned_cols=287  Identities=19%  Similarity=0.288  Sum_probs=245.5

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      ...+.|.+|.+.|++++++  +++|++|+.||+|+|||..  +....+..|...|.+++|+  +..|++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            5677899999999999987  7899999999999999943  4566677888999999998  77999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +.........                          .....+.+|...|.+++|+|++..|++++.|++|++||++++++
T Consensus       135 ~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~  188 (354)
T 2pbi_B          135 LTFDKNENMA--------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL  188 (354)
T ss_dssp             CCCCTTCCSG--------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             Eecccccccc--------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence            8764321100                          01123456999999999999999999999999999999999999


Q ss_pred             eeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728          255 LESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG  331 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  331 (474)
                      +..+.+|...|.++.++|+  + .|++|+.||.|++||++...      ....+..|...|.+++|+|++.+|++++.|+
T Consensus       189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  262 (354)
T 2pbi_B          189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSDDA  262 (354)
T ss_dssp             EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence            9999999999999999874  4 89999999999999998654      3556778999999999999999999999999


Q ss_pred             cEEEeecCcccccceeeeec----ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          332 LVNFWERELNLSHGGVLRGH----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       332 ~i~v~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      .|++||++...... .+..+    ....+++++++.+|++|+.|+.|++||+.+++  .+..+.+|.+.|++++|+|++.
T Consensus       263 ~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          263 TCRLYDLRADREVA-IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS--RVSILFGHENRVSTLRVSPDGT  339 (354)
T ss_dssp             CEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSS
T ss_pred             eEEEEECCCCcEEE-EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc--eEEEEECCCCcEEEEEECCCCC
Confidence            99999998765432 22222    23456777899999999999999999998887  4677889999999999999999


Q ss_pred             cccccceEEEEEecCCCcEEEEE
Q 047728          408 SLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       408 ~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                              +|++|+.|++|+||+
T Consensus       340 --------~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          340 --------AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             --------CEEEEETTSEEEEEC
T ss_pred             --------EEEEEcCCCCEEecC
Confidence                    899999999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.7e-42  Score=319.48  Aligned_cols=268  Identities=21%  Similarity=0.287  Sum_probs=229.5

Q ss_pred             cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ....+.+|.+.|.+++|+  +.+|++++.||+|++||+.++....                                .+.
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------------------~~~   52 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------------------SIQ   52 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--------------------------------Eee
Confidence            345678899999999998  6689999999999999998765432                                234


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      .|..+|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ +|++|+.|++|++||++.... 
T Consensus        53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-  131 (304)
T 2ynn_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-  131 (304)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-
T ss_pred             ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-
Confidence            488999999999999999999999999999999999999999999999999999999 999999999999999986532 


Q ss_pred             eeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEe--cCCEEEEEeCC
Q 047728          297 TKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVT--AGNLVFSGSAD  371 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~--~~~~l~sgs~d  371 (474)
                          ....+.+|...|.+++|+| ++.+|++|+.|+.|++||++..........+|...+  +++.+  ++.+|++|+.|
T Consensus       132 ----~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D  207 (304)
T 2ynn_A          132 ----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (304)
T ss_dssp             ----EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred             ----hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence                3456778999999999999 678999999999999999987766555555555545  44444  67899999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG  451 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  451 (474)
                      ++|++||+++++  ++..+.+|...|.+++|+|++.        +|++|+.||+|++||+.+.       .....+..|.
T Consensus       208 ~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~--------~l~s~s~Dg~i~iWd~~~~-------~~~~~~~~~~  270 (304)
T 2ynn_A          208 LTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP--------IIISGSEDGTLKIWNSSTY-------KVEKTLNVGL  270 (304)
T ss_dssp             SEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS--------EEEEEETTSCEEEEETTTC-------CEEEEECCSS
T ss_pred             CeEEEEeCCCCc--cceeeCCCCCCEEEEEECCCCC--------EEEEEcCCCeEEEEECCCC-------ceeeeccCCC
Confidence            999999999887  6788999999999999999998        9999999999999999887       4566777788


Q ss_pred             CCCCccccCC
Q 047728          452 VAPNSLPYAP  461 (474)
Q Consensus       452 ~~v~~l~~~p  461 (474)
                      ..+.+++|+|
T Consensus       271 ~~~~~~~~~~  280 (304)
T 2ynn_A          271 ERSWCIATHP  280 (304)
T ss_dssp             SSEEEEEECT
T ss_pred             ccEEEEEECC
Confidence            8888884443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-41  Score=319.90  Aligned_cols=298  Identities=19%  Similarity=0.286  Sum_probs=230.8

Q ss_pred             cceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCCc----ccccc-cc-CccCEEEEEec--CCEEEEEeCCCeE
Q 047728           99 PNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQR----EFSGF-KS-NSGLVKAIVIS--NEKIFSGHQDGKI  170 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~----~~~~~-~~-h~~~V~~i~~~--~~~l~s~~~dg~i  170 (474)
                      ...++..|.+|++.|+++++++++|++|+.|++|++||...    ....+ .. |...|.+++|+  +++|++|+.|++|
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            34678899999999999999988999999999999999653    23333 34 99999999998  6799999999999


Q ss_pred             EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728          171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~  250 (474)
                      ++|++.........                         ......+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus        83 ~iw~~~~~~~~~~~-------------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           83 SIWAKEESADRTFE-------------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             EEEEC-------CC-------------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             EEEEcccCcCcccc-------------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            99998643210000                         00012356799999999999999999999999999999994


Q ss_pred             C----cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC--CCE
Q 047728          251 D----YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD--AAI  323 (474)
Q Consensus       251 ~----~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~  323 (474)
                      .    .+++..+.+|...|.+++|+|++ +|++++.|++|++||.+...    ......+.+|...|.+++|+|+  +.+
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeE
Confidence            3    25677888999999999999999 99999999999999986431    1245667789999999999998  779


Q ss_pred             EEEEcCCCcEEEeecCcccc-------cceeee-ecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEE-EeecCC
Q 047728          324 VYCGSSDGLVNFWERELNLS-------HGGVLR-GHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICL-SMLTGH  393 (474)
Q Consensus       324 l~~~~~dg~i~v~d~~~~~~-------~~~~~~-~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~~~h  393 (474)
                      |++++.|++|++||++....       ....+. .|...+.++.+. +.+|++++.||.|+|||..+++.... ....+|
T Consensus       214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            99999999999999875421       112222 377778777663 56899999999999999987753223 334678


Q ss_pred             cc-ceEEEEEee--CCccccccceEEEEEecCCCcEEEEEccC
Q 047728          394 SG-PVKCLAVEK--DDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       394 ~~-~v~~l~~~~--~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      .. .|.+++|+|  ++.        +|++|+.||+|+||++..
T Consensus       294 ~~~~v~~v~~~~~~~~~--------~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINVVKWLELNGKT--------ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEC-----C--------CEEEEETTSEEEEEEC--
T ss_pred             ccceEEEEEEecCCCce--------EEEEecCCCcEEEEEecc
Confidence            87 899999999  566        899999999999999865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=321.43  Aligned_cols=297  Identities=23%  Similarity=0.326  Sum_probs=237.6

Q ss_pred             ceeeeeeeeecC-cEEEEEEc--CCEEEEeeCCCcEEEEeCCcc-----ccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728          100 NVLIGSLVREEG-HIYSLAAA--GDLLYTGSDSKNIRVWKNQRE-----FSGFKSNSGLVKAIVIS--NEKIFSGHQDGK  169 (474)
Q Consensus       100 ~~~~~~l~~h~~-~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~-----~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~  169 (474)
                      ..++.++.+|.+ .|++++|+  |++||+|+.|++|+|||....     .....+|...|.+++|+  +++|++|+.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            467889999988 89998876  889999999999999985432     12336899999999998  679999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      |++|++..+.....                              ..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus        85 v~iw~~~~~~~~~~------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           85 TCIWKKNQDDFECV------------------------------TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             EEEEEECCC-EEEE------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEEccCCCeEEE------------------------------EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence            99999876643211                              134569999999999999999999999999999999


Q ss_pred             CCcc---eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          250 SDYK---CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       250 ~~~~---~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      .++.   ++..+..|...|.+++|+|++ +|++++.|+.|++||.+...    ......+.+|...|.+++|+|++++|+
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l~  210 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRLA  210 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEEE
Confidence            8763   456778899999999999999 99999999999999987432    223456778999999999999999999


Q ss_pred             EEcCCCcEEEeecCcccccc--------------eeee-ecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCce----
Q 047728          326 CGSSDGLVNFWERELNLSHG--------------GVLR-GHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEH----  384 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~--------------~~~~-~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~----  384 (474)
                      +++.|+.|++||........              ..+. .|...+.+  +++++..|++++.|+.|++|+......    
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  290 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP  290 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence            99999999999964321110              1111 25555644  456789999999999999999865421    


Q ss_pred             ---EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          385 ---ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       385 ---~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                         .......+|...|++++|+|++..       +|++|+.||+|++|++.+++.+
T Consensus       291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~-------~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          291 TFSLTAHLHQAHSQDVNCVAWNPKEPG-------LLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             CEEEEEEETTSSSSCEEEEEECSSSTT-------EEEEEETTSCEEEEEECC----
T ss_pred             eEEEEeeecccccCcEeEeEEeCCCce-------EEEEcCCCCcEEEEEecCCCCc
Confidence               112334689999999999998743       8999999999999999887543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-41  Score=318.16  Aligned_cols=286  Identities=21%  Similarity=0.387  Sum_probs=241.4

Q ss_pred             cceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC-------ccccccccCccCEEEEEec--CCEEEEEeC
Q 047728           99 PNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ-------REFSGFKSNSGLVKAIVIS--NEKIFSGHQ  166 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~-------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~  166 (474)
                      ...+..+|.+|++.|++++++   +++|++|+.|++|++|+..       ..+..+.+|...|.+++|+  +.+|++|+.
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            356778999999999999986   4799999999999999853       2356788999999999998  679999999


Q ss_pred             CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728          167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      |++|++||+.+++...                                .+.+|...|.+++|+|++.+|++|+.|++|++
T Consensus        86 D~~v~~wd~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v  133 (319)
T 3frx_A           86 DKTLRLWDVATGETYQ--------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKV  133 (319)
T ss_dssp             TSEEEEEETTTTEEEE--------------------------------EEECCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCEEEEEECCCCCeeE--------------------------------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            9999999998875432                                34569999999999999999999999999999


Q ss_pred             EEcCCcceeeeeeecCcceeEEEecCC------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728          247 WRTSDYKCLESVIAHDDAVNSIVAGFD------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       247 wd~~~~~~~~~~~~~~~~v~~v~~~~~------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      ||++ ++++..+.+|...|.++.+.|.      + .+++++.|+.|++||++...      ....+.+|...|.+++|+|
T Consensus       134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~h~~~v~~~~~sp  206 (319)
T 3frx_A          134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASP  206 (319)
T ss_dssp             EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE------EEEEECCCCSCEEEEEECT
T ss_pred             EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch------hheeecCCCCcEEEEEEcC
Confidence            9986 5677888899999999999984      3 79999999999999997543      3456678999999999999


Q ss_pred             CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee--------c
Q 047728          320 DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML--------T  391 (474)
Q Consensus       320 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--------~  391 (474)
                      ++++|++++.|+.|++||+.+...............++++|++.+|++++.+ .+++|++.....  +..+        .
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~--~~~~~~~~~~~~~  283 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL--VDDLRPEFAGYSK  283 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEE--EEEECCCCTTCCG
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee--eeccCcccccccc
Confidence            9999999999999999999987665444333344557778899999988755 599999987652  2333        2


Q ss_pred             CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .|...+.+++|+|+++        +|++|+.||.|+||++.+.
T Consensus       284 ~~~~~v~~~~~spdg~--------~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          284 AAEPHAVSLAWSADGQ--------TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             GGCCCEEEEEECTTSS--------EEEEEETTSCEEEEEEEEC
T ss_pred             CcCcceeEEEECCCCC--------EEEEeecCceEEEEEEeec
Confidence            3567899999999999        9999999999999999764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-42  Score=332.26  Aligned_cols=296  Identities=21%  Similarity=0.347  Sum_probs=246.9

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV  172 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v  172 (474)
                      ...+.++|.+|.+.|++++|+  +++|++|+.||+|+|||..  +....+..|...|.+++|+  +++|++|+.|+.|++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            346778899999999999986  7899999999999999954  5667788999999999998  779999999999999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCC
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~  251 (474)
                      |++.........    .                     .....+.+|...|.++.|.|+ +..|++|+.|++|++||+.+
T Consensus       135 w~~~~~~~~~~~----~---------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~  189 (380)
T 3iz6_a          135 FNLSSQADRDGN----M---------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT  189 (380)
T ss_dssp             EECCCCSSCCCS----S---------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT
T ss_pred             EECCCCccccCC----c---------------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC
Confidence            999764321000    0                     011245679999999999996 56799999999999999999


Q ss_pred             cceeeee-----eecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728          252 YKCLESV-----IAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV  324 (474)
Q Consensus       252 ~~~~~~~-----~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  324 (474)
                      ++.+..+     .+|...|.++.+++ ++ .+++|+.|+.|++||++....     ....+.+|...|.+++|+|++++|
T Consensus       190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l  264 (380)
T 3iz6_a          190 GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRF  264 (380)
T ss_dssp             CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEE
T ss_pred             CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeE
Confidence            9988777     57889999999987 44 999999999999999975433     345677899999999999999999


Q ss_pred             EEEcCCCcEEEeecCcccccceeeee------c--ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee----cC
Q 047728          325 YCGSSDGLVNFWERELNLSHGGVLRG------H--KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML----TG  392 (474)
Q Consensus       325 ~~~~~dg~i~v~d~~~~~~~~~~~~~------~--~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----~~  392 (474)
                      ++++.|++|++||++++.........      +  ....+++++++++|++|+.||.|++||+..++.  +..+    .+
T Consensus       265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~  342 (380)
T 3iz6_a          265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM--VLNLGTLQNS  342 (380)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE--EEEECCSCSS
T ss_pred             EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce--EEEEecccCC
Confidence            99999999999999987654322211      1  134578888999999999999999999988773  3344    68


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |.+.|++++|+|++.        +|++|+.|++|+||++...
T Consensus       343 h~~~v~~l~~s~dg~--------~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          343 HEGRISCLGLSSDGS--------ALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CCCCCCEEEECSSSS--------EEEEECTTSCEEEEECCSS
T ss_pred             CCCceEEEEECCCCC--------EEEEeeCCCCEEEEecCCC
Confidence            999999999999999        9999999999999999765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-41  Score=313.88  Aligned_cols=286  Identities=19%  Similarity=0.239  Sum_probs=241.6

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      .+.+++.+|.+.|++++|+  +++|++|+.||+|++||..  ..+..+..|...|.++.|.  +++|++|+.|++|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            4567899999999999987  8899999999999999965  4567788999999999997  77999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-c
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-K  253 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~  253 (474)
                      +.+++...                                .+.+|...|.+++|+|++++|++|+.|++|++||++++ .
T Consensus        84 ~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~  131 (304)
T 2ynn_A           84 YNTGEKVV--------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (304)
T ss_dssp             TTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred             CCCCcEEE--------------------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence            99876532                                34559999999999999999999999999999999877 4


Q ss_pred             eeeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcC
Q 047728          254 CLESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSS  329 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~  329 (474)
                      ....+.+|...|.+++|+|+ + .|++|+.|+.|++||++....     .......+...+..++|.|  ++.+|++++.
T Consensus       132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            55678899999999999994 4 899999999999999975543     1223345667899999987  7789999999


Q ss_pred             CCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          330 DGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       330 dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      |+.|++||++++... ..+.+|...+.  +++|++.+|++|+.||+|++||+.+.+  ++..+..|...+.+++|+|++.
T Consensus       207 D~~i~iWd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~  283 (304)
T 2ynn_A          207 DLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGR  283 (304)
T ss_dssp             TSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC--EEEEECCSSSSEEEEEECTTCG
T ss_pred             CCeEEEEeCCCCccc-eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--eeeeccCCCccEEEEEECCCCC
Confidence            999999999987654 56677877774  556789999999999999999999887  5678889999999999999875


Q ss_pred             cccccceEEEEEecCCCcEEEEEccC
Q 047728          408 SLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ..      ++++|+.|| +.+|++..
T Consensus       284 ~~------~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          284 KN------YIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             GG------CEEEEETTE-EEEEECC-
T ss_pred             ce------EEEEecCCc-eEEEEecc
Confidence            32      577777665 77888765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-41  Score=346.47  Aligned_cols=356  Identities=20%  Similarity=0.233  Sum_probs=266.7

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccc-------cCccCEEEEEec--CCEEEEE
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFK-------SNSGLVKAIVIS--NEKIFSG  164 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~-------~h~~~V~~i~~~--~~~l~s~  164 (474)
                      .+..++..+.+|++.|++++|+  |++|++|+.|++|++||..  +....+.       +|.+.|.+++|+  +++|+++
T Consensus       178 ~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  257 (611)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence            4556778899999999999986  8899999999999999954  3444442       799999999998  6799999


Q ss_pred             eCCCeEEEEecCCCCcceeeeecccCc---------cceeeeeecCCCCeEEEeeec----cceeeeccCCeeEEEecCC
Q 047728          165 HQDGKIRVWKVSSKDASIHKRVGTLPT---------FKDFIKCSMKPSNYIEVRRHR----NGLWIKHFDAISSLSMSED  231 (474)
Q Consensus       165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~~~~  231 (474)
                      +.|++|++||+.+++............         ...++....  ...+.++...    ...+.+|...|++++|+|+
T Consensus       258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd  335 (611)
T 1nr0_A          258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA--NGFINFVNPELGSIDQVRYGHNKAITALSSSAD  335 (611)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET--TCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC--CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence            999999999999876654333211000         011111111  1122222221    2345689999999999999


Q ss_pred             CCEEEEEECCCcEEEEEcCCcceeeee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee-----------e
Q 047728          232 QNLLYSASWDKTFKVWRTSDYKCLESV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK-----------H  299 (474)
Q Consensus       232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~  299 (474)
                      +++|++++.|++|++||+.++++...+ ..|...|.++++++++.+++++.|+.+++|++........           .
T Consensus       336 g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~  415 (611)
T 1nr0_A          336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL  415 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence            999999999999999999998887665 5789999999999888999999999999999764321100           0


Q ss_pred             ee-----------------------eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee-
Q 047728          300 FF-----------------------SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI-  355 (474)
Q Consensus       300 ~~-----------------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v-  355 (474)
                      ..                       ......+...+.+++|+|++++|++|+.|+.|++||+...........+|...+ 
T Consensus       416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~  495 (611)
T 1nr0_A          416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT  495 (611)
T ss_dssp             EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred             EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceE
Confidence            00                       000112456789999999999999999999999999976532211225676666 


Q ss_pred             -EEEEecCCEEEEEeCCCcEEEEECCC-CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          356 -LCLVTAGNLVFSGSADMSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       356 -~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                       ++|+|++++|++++.|++|++||+.+ ++......+.+|...|++++|+|+++        +|++|+.|++|+||++..
T Consensus       496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~--------~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV--------RLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTC
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC--------EEEEEECCCcEEEEECCC
Confidence             55667899999999999999999987 44211112345999999999999999        999999999999999987


Q ss_pred             CCCCCCCCcccccccCC-CCCCCccccCCCCCcCCceeecc
Q 047728          434 QAPPLVSTTQQHPLEGH-GVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       434 ~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      +...     ....+.+| ...|.++    +|+|||+ |+++
T Consensus       568 ~~~~-----~~~~~~~h~~~~v~~v----~fs~d~~-l~s~  598 (611)
T 1nr0_A          568 PSDH-----PIIIKGAHAMSSVNSV----IWLNETT-IVSA  598 (611)
T ss_dssp             TTSC-----CEEETTSSTTSCEEEE----EEEETTE-EEEE
T ss_pred             cccc-----cchhhccCcccCeeEE----EEcCCCE-EEEe
Confidence            6321     11346688 7888888    6678898 5554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-41  Score=323.35  Aligned_cols=284  Identities=20%  Similarity=0.237  Sum_probs=228.7

Q ss_pred             eeecCcEEEEEEc--CCEEEEeeC------CCcEEEEeCCc------cccccccCccCEEEEEec-CCEEEEEeCCCeEE
Q 047728          107 VREEGHIYSLAAA--GDLLYTGSD------SKNIRVWKNQR------EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIR  171 (474)
Q Consensus       107 ~~h~~~i~~~~~~--~~~l~tgs~------dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~  171 (474)
                      ..|++.|++++|+  |++||+|+.      |+.|++|+...      .......|...|.+++|+ ++.+++++.||+|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~  118 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE  118 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence            4699999998876  899999997      77899997442      223345788999999998 56888999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      |||+.+++.......                            ...+|...|++++|+|++++|++|+.|++|++||+++
T Consensus       119 lWd~~~~~~~~~~~~----------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B          119 LWEILEKESLLVNKF----------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             EC--------CCCCE----------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EeeccccceeEEEee----------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999988764322111                            1235999999999999999999999999999999999


Q ss_pred             cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-CCEEEEEc
Q 047728          252 YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGS  328 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~  328 (474)
                      ++++..+.+|...|++++|++++  .+++++.|+.|++||++......    ......+...+.+++|+|+ +.+|++|+
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT----RIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC----BCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee----eeeeccccccccchhhhhcccceEEEee
Confidence            99999999999999999999987  78999999999999998654311    2233456778999999996 57899999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeEEEE--ecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee-
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK-  404 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-  404 (474)
                      .|+.|++||++++... ..+.+|...+.++.  +++ ++|++|+.|++|+|||+++++.  + ...+|.+.|++|+|+| 
T Consensus       247 ~d~~i~~wd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--~-~~~~H~~~V~~vafsP~  322 (357)
T 4g56_B          247 ETGNVSLVNIKNPDSA-QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV--F-RDLSHRDFVTGVAWSPL  322 (357)
T ss_dssp             SSSCEEEEESSCGGGC-EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--E-EECCCSSCEEEEEECSS
T ss_pred             cccceeEEECCCCcEe-EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--e-EECCCCCCEEEEEEeCC
Confidence            9999999999987654 55667877776554  555 6899999999999999998873  3 4458999999999998 


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ++.        +|++++.||+|++|++...
T Consensus       323 d~~--------~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          323 DHS--------KFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             STT--------EEEEEETTSCEEEEECC--
T ss_pred             CCC--------EEEEEcCCCeEEEEECCCC
Confidence            677        8999999999999999765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.8e-41  Score=319.20  Aligned_cols=286  Identities=20%  Similarity=0.309  Sum_probs=234.3

Q ss_pred             ceeeeeeeeecCcEEEEEE--------cCCEEEEeeCCCcEEEEeCCc---------cccccccCccCEEEEEec--CCE
Q 047728          100 NVLIGSLVREEGHIYSLAA--------AGDLLYTGSDSKNIRVWKNQR---------EFSGFKSNSGLVKAIVIS--NEK  160 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~--------~~~~l~tgs~dg~v~vwd~~~---------~~~~~~~h~~~V~~i~~~--~~~  160 (474)
                      ..+...|.+|++.|+++++        ++++|++|+.|++|++||...         ....+.+|...|.+++|+  +.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            4567889999999999988        578999999999999999542         345678999999999998  679


Q ss_pred             EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728          161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW  240 (474)
Q Consensus       161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  240 (474)
                      |++|+.|++|++||+.+++...                                .+.+|...|.+++|+|++++|++++.
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~--------------------------------~~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYK--------------------------------RFVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEE--------------------------------EEECCCSCEEEEEECSSTTEEEEEET
T ss_pred             EEEEcCCCcEEEEECCCCcEEE--------------------------------EEcCCCCcEEEEEECCCCCEEEEEcC
Confidence            9999999999999998875432                                34569999999999999999999999


Q ss_pred             CCcEEEEEcCCcceeeeee---ecCcceeEEEecCCC-----------eEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728          241 DKTFKVWRTSDYKCLESVI---AHDDAVNSIVAGFDG-----------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL  306 (474)
Q Consensus       241 dg~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  306 (474)
                      |++|++||+.. .......   .|...|.+++|+|++           .+++++.|+.|++||...  .     ....+.
T Consensus       139 d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~-----~~~~~~  210 (343)
T 2xzm_R          139 EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--Q-----IRYTFK  210 (343)
T ss_dssp             TSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--E-----EEEEEE
T ss_pred             CCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--c-----eeEEEc
Confidence            99999999974 3333333   688899999999874           799999999999999432  1     345667


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee-eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL-RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      .|...|.+++|+|++++|++++.|+.|++||+.........+ .++....+++++++.+++++ .|+.|++||+.+.+..
T Consensus       211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred             CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence            899999999999999999999999999999995443333333 34455567777888887655 5888999999876543


Q ss_pred             EEEeec-----------CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          386 CLSMLT-----------GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       386 ~~~~~~-----------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .+..+.           +|...|.+++|+|++.        +|++|+.||.|++|++.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--------~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK--------KLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC--------CEEEEETTSEEEEEEEEEE
T ss_pred             ceEEeecCcchhhhhhcCCCCceEEEEECCCCC--------eEEEecCCceEEEEEEEcc
Confidence            222333           6888999999999999        8999999999999999765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.5e-41  Score=313.44  Aligned_cols=286  Identities=23%  Similarity=0.403  Sum_probs=245.3

Q ss_pred             cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV  172 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v  172 (474)
                      ...+..++.+|.+.|++++++  +++|++|+.||.|++|+..  +....+.+|...|.+++|+  +++|++++.||.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            346778899999999999987  7899999999999999954  5567788999999999998  679999999999999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      ||+.+++...                                .+.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus        92 wd~~~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  139 (312)
T 4ery_A           92 WDVSSGKCLK--------------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG  139 (312)
T ss_dssp             EETTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EECCCCcEEE--------------------------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            9998875432                                23459999999999999999999999999999999999


Q ss_pred             ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728          253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG  331 (474)
Q Consensus       253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  331 (474)
                      +++..+..|..+|.+++|+|++ .+++++.||.|++||++....     .......+...+..++|+|++++|++++.|+
T Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            9999999999999999999998 899999999999999986542     2222345667899999999999999999999


Q ss_pred             cEEEeecCcccccceeeeecceee----EEEE-ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          332 LVNFWERELNLSHGGVLRGHKLAI----LCLV-TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       332 ~i~v~d~~~~~~~~~~~~~~~~~v----~~~~-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      .|++||++++... ..+.+|....    ..+. +++.+|++|+.||.|++||+.+++  .+..+.+|...|.+++|+|++
T Consensus       215 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~  291 (312)
T 4ery_A          215 TLKLWDYSKGKCL-KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTE  291 (312)
T ss_dssp             EEEEEETTTTEEE-EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--EEEEECCCSSCEEEEEECSSS
T ss_pred             eEEEEECCCCcEE-EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--hhhhhhccCCcEEEEeecCcC
Confidence            9999999887654 3344454322    2333 468899999999999999999887  567889999999999999999


Q ss_pred             ccccccceEEEEEec--CCCcEEEEEcc
Q 047728          407 ESLSREKRWILYSGS--LDKSVKMWRVS  432 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s--~Dg~i~vw~~~  432 (474)
                      .        +|++++  .|++|++|+..
T Consensus       292 ~--------~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          292 N--------IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             S--------EEEEEECTTTCCEEEEECC
T ss_pred             C--------ceEEEEccCCccEEEecCC
Confidence            8        888886  69999999964

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=316.23  Aligned_cols=274  Identities=23%  Similarity=0.309  Sum_probs=237.8

Q ss_pred             cccccCccCEEEEEec------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccce
Q 047728          142 SGFKSNSGLVKAIVIS------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGL  215 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (474)
                      ...++|.+.|.+++|+      +++|++|+.|++|+||++........                              ..
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~------------------------------~~   75 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ------------------------------WS   75 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE------------------------------EE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee------------------------------ee
Confidence            3557899999999996      35899999999999999976543211                              12


Q ss_pred             eeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728          216 WIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       216 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~  294 (474)
                      +.+|...|.+++|++++.++++++.|++|++||+.+++++..+..|...+.+++|+|++ .|++++.||.|++||++...
T Consensus        76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~  155 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK  155 (321)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred             eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence            45699999999999999999999999999999999999999999999999999999999 99999999999999998654


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCC
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADM  372 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg  372 (474)
                      .      ...+..+...|.+++|+|++++|++++.|+.|++||++++... ..+.+|...+  +++++++++|++|+.|+
T Consensus       156 ~------~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          156 K------EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL-HTLEGHAMPIRSLTFSPDSQLLVTASDDG  228 (321)
T ss_dssp             E------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred             e------eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-EEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence            3      4456677888999999999999999999999999999887654 4556777665  56667899999999999


Q ss_pred             cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728          373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV  452 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  452 (474)
                      .|++||++..+  ....+.+|...|.+++|+|++.        +|++++.|++|++||+.++       .+...+.+|..
T Consensus       229 ~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~--------~l~s~s~D~~v~iwd~~~~-------~~~~~~~~h~~  291 (321)
T 3ow8_A          229 YIKIYDVQHAN--LAGTLSGHASWVLNVAFCPDDT--------HFVSSSSDKSVKVWDVGTR-------TCVHTFFDHQD  291 (321)
T ss_dssp             CEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTT-------EEEEEECCCSS
T ss_pred             eEEEEECCCcc--eeEEEcCCCCceEEEEECCCCC--------EEEEEeCCCcEEEEeCCCC-------EEEEEEcCCCC
Confidence            99999999887  4678899999999999999999        9999999999999999876       56677888999


Q ss_pred             CCCccccCCCCCcCCceeecc
Q 047728          453 APNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       453 ~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .|.++    +|+|||++|+++
T Consensus       292 ~v~~v----~~s~~g~~l~s~  308 (321)
T 3ow8_A          292 QVWGV----KYNGNGSKIVSV  308 (321)
T ss_dssp             CEEEE----EECTTSSEEEEE
T ss_pred             cEEEE----EECCCCCEEEEE
Confidence            99998    667788888765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-41  Score=327.99  Aligned_cols=282  Identities=23%  Similarity=0.400  Sum_probs=244.4

Q ss_pred             EEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEe
Q 047728          133 RVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR  209 (474)
Q Consensus       133 ~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (474)
                      ..|... .....+.+|.+.|++++|+  +.+|++|+.||+|++||+.+++...                           
T Consensus        92 ~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---------------------------  144 (410)
T 1vyh_C           92 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---------------------------  144 (410)
T ss_dssp             CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---------------------------
T ss_pred             cccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------------
Confidence            345432 3356678999999999998  5799999999999999999876532                           


Q ss_pred             eeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEE
Q 047728          210 RHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVW  288 (474)
Q Consensus       210 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iw  288 (474)
                           .+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|+.|++|
T Consensus       145 -----~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w  219 (410)
T 1vyh_C          145 -----TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW  219 (410)
T ss_dssp             -----EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             -----EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence                 345699999999999999999999999999999999999999999999999999999998 89999999999999


Q ss_pred             EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--c-----
Q 047728          289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--A-----  361 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~-----  361 (474)
                      |++.+.      ....+.+|...|.+++++|++.+|++++.|+.|++||+++.... ..+.+|...+.++.+  +     
T Consensus       220 d~~~~~------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~  292 (410)
T 1vyh_C          220 EVQTGY------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSS  292 (410)
T ss_dssp             ETTTCC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGG
T ss_pred             ECCCCc------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-eEecCCCceEEEEEEcCcccccc
Confidence            998654      35567789999999999999999999999999999999877554 455677777766654  2     


Q ss_pred             ---------------CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728          362 ---------------GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV  426 (474)
Q Consensus       362 ---------------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i  426 (474)
                                     +.+|++|+.|+.|++||+++++  ++..+.+|...|++++|+|++.        +|++|+.||.|
T Consensus       293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~--------~l~s~s~D~~i  362 (410)
T 1vyh_C          293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGK--------FILSCADDKTL  362 (410)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS--------CEEEEETTTEE
T ss_pred             hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCC--------EEEEEeCCCeE
Confidence                           5699999999999999999887  5678889999999999999999        89999999999


Q ss_pred             EEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       427 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ++||+.++       .+...+.+|...|.++    +|+||+.+++++|
T Consensus       363 ~vwd~~~~-------~~~~~~~~h~~~v~~l----~~~~~~~~l~sgs  399 (410)
T 1vyh_C          363 RVWDYKNK-------RCMKTLNAHEHFVTSL----DFHKTAPYVVTGS  399 (410)
T ss_dssp             EEECCTTS-------CCCEEEECCSSCEEEE----EECSSSSCEEEEE
T ss_pred             EEEECCCC-------ceEEEEcCCCCcEEEE----EEcCCCCEEEEEe
Confidence            99999776       4556778999999999    5677788887764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-41  Score=341.31  Aligned_cols=309  Identities=27%  Similarity=0.453  Sum_probs=265.2

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      .+++..+.+|...|.++++.  +++|++++.|+.|++|+.. +.+..+.+|...|.+++|+  ++.|++++.|++|++|+
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~  331 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  331 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            45677889999999998876  7899999999999999954 5567788999999999998  66999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +......                                 .+.+|...|.+++|+|++++|++++.|+.|++||. +++.
T Consensus       332 ~~~~~~~---------------------------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~  377 (577)
T 2ymu_A          332 RNGQHLQ---------------------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL  377 (577)
T ss_dssp             TTSCEEE---------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCE
T ss_pred             CCCCeeE---------------------------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCE
Confidence            8654321                                 23448899999999999999999999999999995 6788


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      +..+..|...|.+++|+|++ .|++++.|+.|++||...  .     ....+..|...|++++|+|++++|++++.|+.|
T Consensus       378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~-----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--Q-----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--C-----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--C-----EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence            88999999999999999999 899999999999999542  1     356677899999999999999999999999999


Q ss_pred             EEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728          334 NFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      ++||....  ....+.+|...+.  ++++++++|++++.|+.|++||.. ++  ++..+.+|...|++++|+|+++    
T Consensus       451 ~~w~~~~~--~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~--~~~~~~~h~~~v~~l~~s~dg~----  521 (577)
T 2ymu_A          451 KLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSPDGQ----  521 (577)
T ss_dssp             EEEETTSC--EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC--EEEEEECCSSCEEEEEECTTSS----
T ss_pred             EEEECCCC--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC--EEEEEeCCCCCEEEEEEcCCCC----
Confidence            99997543  3345667777764  556789999999999999999964 44  4678899999999999999999    


Q ss_pred             cceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          412 EKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                          +|++++.||.|+|||.. +       .....+.+|...|+++    +|+|||++|+++|
T Consensus       522 ----~l~s~~~dg~v~lwd~~-~-------~~~~~~~~h~~~v~~~----~fs~dg~~l~s~~  568 (577)
T 2ymu_A          522 ----TIASASDDKTVKLWNRN-G-------QLLQTLTGHSSSVWGV----AFSPDGQTIASAS  568 (577)
T ss_dssp             ----CEEEEETTSEEEEECTT-S-------CEEEEEECCSSCEEEE----EECTTSSCEEEEE
T ss_pred             ----EEEEEECcCEEEEEeCC-C-------CEEEEEcCCCCCEEEE----EEcCCCCEEEEEe
Confidence                89999999999999963 3       4566788999999999    6788999998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4e-40  Score=310.83  Aligned_cols=278  Identities=17%  Similarity=0.291  Sum_probs=235.4

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      +....+.+|.+.|.+++|+  +++|++|+.||+|++||+.+++...                                .+
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--------------------------------~~   93 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--------------------------------AI   93 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--------------------------------EE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--------------------------------Ee
Confidence            3456688999999999998  6699999999999999998776432                                22


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEccc
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL  292 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~  292 (474)
                      ..|...|.+++|+|++++|++|+.|+.|++||+.+.    +....+.+|...|.++.|.+++.+++++.|+.|++||++.
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~  173 (340)
T 1got_B           94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence            348889999999999999999999999999999875    3556778899999999999999999999999999999975


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeC
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSA  370 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~  370 (474)
                      ..      ....+.+|...|.+++|+|++++|++++.|+.|++||++++... ..+.+|...+  ++++|++++|++|+.
T Consensus       174 ~~------~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          174 GQ------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             TE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             Cc------EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE-EEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence            43      34566789999999999999999999999999999999887554 4566777666  455678999999999


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH  450 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~  450 (474)
                      ||.|++||++..+.........+...|++++|+|++.        +|++|+.||.|++||+.+.       .....+.+|
T Consensus       247 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~l~~g~~d~~i~vwd~~~~-------~~~~~~~~h  311 (340)
T 1got_B          247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR--------LLLAGYDDFNCNVWDALKA-------DRAGVLAGH  311 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTC-------CEEEEEECC
T ss_pred             CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC--------EEEEECCCCeEEEEEcccC-------cEeeEeecC
Confidence            9999999999887443333334456899999999999        9999999999999999876       455678899


Q ss_pred             CCCCCccccCCCCCcCCceeeccC
Q 047728          451 GVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       451 ~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ...|.++    +|+|||++++++|
T Consensus       312 ~~~v~~~----~~s~dg~~l~s~s  331 (340)
T 1got_B          312 DNRVSCL----GVTDDGMAVATGS  331 (340)
T ss_dssp             SSCEEEE----EECTTSSCEEEEE
T ss_pred             CCcEEEE----EEcCCCCEEEEEc
Confidence            9999999    6788999888764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-39  Score=318.10  Aligned_cols=311  Identities=25%  Similarity=0.409  Sum_probs=260.7

Q ss_pred             eeeeeeeecCc-EEEEEEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCC
Q 047728          102 LIGSLVREEGH-IYSLAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       102 ~~~~l~~h~~~-i~~~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      ....+.+|.+. +.|+++++++|++|+.||+|++||.  .+.+..+.+|...|.++.++++.|++|+.||+|++||+.++
T Consensus       110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence            34578899886 6899999999999999999999995  46677888999999999999999999999999999999887


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      +...                                .+.+|...|.+++|+  ++.|++|+.|+.|++||+.+++.+..+
T Consensus       190 ~~~~--------------------------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          190 ECIH--------------------------------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             EEEE--------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             cEEE--------------------------------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            5432                                234599999999995  568999999999999999999999999


Q ss_pred             eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          259 IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       259 ~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                      ..|...|.++.+. ...+++++.||.|++||++...      ....+..|...|.+++|  ++.++++++.|+.|++||+
T Consensus       236 ~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~  306 (445)
T 2ovr_B          236 MGHVAAVRCVQYD-GRRVVSGAYDFMVKVWDPETET------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV  306 (445)
T ss_dssp             ECCSSCEEEEEEC-SSCEEEEETTSCEEEEEGGGTE------EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET
T ss_pred             cCCcccEEEEEEC-CCEEEEEcCCCEEEEEECCCCc------EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC
Confidence            9999999999992 3399999999999999998643      35566788999999999  7899999999999999999


Q ss_pred             CcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC---CccceEEEEEeeCCccccccceE
Q 047728          339 ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG---HSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      +++... ..+.+|...+.++.++++++++|+.||.|++||+++++  ++..+..   |..+|++++|++  .        
T Consensus       307 ~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~--~--------  373 (445)
T 2ovr_B          307 ETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFNK--N--------  373 (445)
T ss_dssp             TTCCEE-EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEECS--S--------
T ss_pred             CCCCEE-EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEECC--C--------
Confidence            987655 45678888999999999999999999999999999887  4556665   889999999964  4        


Q ss_pred             EEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          416 ILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      +|++|+.||.|++||+.+++.....  ......+|...|.++    +|+|||.+++.++
T Consensus       374 ~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~----~~s~~~~~la~~~  426 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLKTGEFIRNL--VTLESGGSGGVVWRI----RASNTKLVCAVGS  426 (445)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEE--EECTTGGGTCEEEEE----EECSSEEEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCceeeee--eccccCCCCceEEEE----EecCCEEEEEEcc
Confidence            8999999999999999987432110  001114566777777    6677888877653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.6e-39  Score=301.34  Aligned_cols=290  Identities=22%  Similarity=0.379  Sum_probs=235.0

Q ss_pred             cceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-------cccccccCccCEEEEEec--CCEEEEEeC
Q 047728           99 PNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNSGLVKAIVIS--NEKIFSGHQ  166 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~~~V~~i~~~--~~~l~s~~~  166 (474)
                      ...+.++|.+|++.|++++++   +++|+||+.||+|+|||...       ....+.+|...|.+++|+  +++|++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            346778899999999999986   57999999999999999542       345678999999999998  679999999


Q ss_pred             CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728          167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      |+.|++|+.........                                ...+...+..+.+++++.+|++++.|+.+++
T Consensus       107 d~~i~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~  154 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRR--------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL  154 (340)
T ss_dssp             TSEEEEEETTTTEEEEE--------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             cccceEEeecccceeee--------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence            99999999987654321                                2236778889999999999999999999999


Q ss_pred             EEcCCcce-eeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728          247 WRTSDYKC-LESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       247 wd~~~~~~-~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  322 (474)
                      ||+..... ...+..|...+..+++++++   .+++++.|+.|++||++...      ....+..|...|++++|+|+++
T Consensus       155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~------~~~~~~~h~~~v~~~~~s~~~~  228 (340)
T 4aow_A          155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK------LKTNHIGHTGYLNTVTVSPDGS  228 (340)
T ss_dssp             ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSS
T ss_pred             EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc------eeeEecCCCCcEEEEEECCCCC
Confidence            99876544 34456789999999998876   68899999999999998543      3556678999999999999999


Q ss_pred             EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE-------EEeecCCcc
Q 047728          323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC-------LSMLTGHSG  395 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-------~~~~~~h~~  395 (474)
                      +|++++.|+.|++||+++...............+++++++. +++++.|+.|++||+++.....       .....+|..
T Consensus       229 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~  307 (340)
T 4aow_A          229 LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP  307 (340)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred             EEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence            99999999999999999876664443333344455556554 5566679999999998775321       122357889


Q ss_pred             ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      .|++++|+|+++        +|++|+.||.|+|||++++.
T Consensus       308 ~v~~l~~s~dg~--------~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          308 QCTSLAWSADGQ--------TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CEEEEEECTTSS--------EEEEEETTSCEEEEEEEC--
T ss_pred             CEEEEEECCCCC--------EEEEEeCCCEEEEEeCCCcC
Confidence            999999999999        99999999999999999873

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-38  Score=306.05  Aligned_cols=286  Identities=23%  Similarity=0.376  Sum_probs=227.9

Q ss_pred             eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCc------------------cCEEEEEec--CCE
Q 047728          105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNS------------------GLVKAIVIS--NEK  160 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~------------------~~V~~i~~~--~~~  160 (474)
                      ...+|.+.|.+++|+  |++||+|+ ++.++||+..  +.+..+..|.                  ..|.+++|+  +++
T Consensus        59 ~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           59 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             EecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            344799999998886  88999987 6899999854  3333343332                  349999998  679


Q ss_pred             EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728          161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW  240 (474)
Q Consensus       161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  240 (474)
                      |++|+.|++|++||+.+++..                                ..+.+|...|.+++|+|++++|++++.
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~  185 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIV--------------------------------MILQGHEQDIYSLDYFPSGDKLVSGSG  185 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEE--------------------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEcCCCeEEEEECCCCcEE--------------------------------EEEccCCCCEEEEEEcCCCCEEEEecC
Confidence            999999999999999876532                                134569999999999999999999999


Q ss_pred             CCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeee-eeeeeecccccEEEEEE
Q 047728          241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHF-FSQTLLKQECAVTALAI  317 (474)
Q Consensus       241 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~  317 (474)
                      |++|++||++++++...+. +...+.+++++| ++ ++++|+.|+.|++||++......... ......+|...|.+++|
T Consensus       186 d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  264 (393)
T 1erj_A          186 DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  264 (393)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             CCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence            9999999999998887775 567899999999 66 89999999999999987644211100 01122578899999999


Q ss_pred             cCCCCEEEEEcCCCcEEEeecCcccc-----------cceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCce
Q 047728          318 SPDAAIVYCGSSDGLVNFWERELNLS-----------HGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       318 ~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      +|++++|++++.|+.|++||++....           ....+.+|...+.++  ++++.+|++|+.|+.|++||+.+++ 
T Consensus       265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~-  343 (393)
T 1erj_A          265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-  343 (393)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe-
Confidence            99999999999999999999876422           123455777766554  5679999999999999999999887 


Q ss_pred             EEEEeecCCccceEEEEEee------CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          385 ICLSMLTGHSGPVKCLAVEK------DDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       385 ~~~~~~~~h~~~v~~l~~~~------~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                       ++..+.+|...|.+++|++      ++.        +|++|+.||+|+||++...
T Consensus       344 -~~~~l~~h~~~v~~v~~~~~~~~~p~~~--------~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          344 -PLLMLQGHRNSVISVAVANGSSLGPEYN--------VFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             -EEEEEECCSSCEEEEEECSSCTTCTTCE--------EEEEEETTSEEEEEEEEEC
T ss_pred             -EEEEECCCCCCEEEEEecCCcCcCCCCC--------EEEEECCCCcEEECccccc
Confidence             4678899999999999987      455        8999999999999999764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.3e-39  Score=323.81  Aligned_cols=309  Identities=26%  Similarity=0.451  Sum_probs=263.2

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      ...+..+.+|.+.|.+++++  +++|++++.|+.|++||.. +.+..+.+|...|.+++|.  +..|++++.|+.|++|+
T Consensus       211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~  290 (577)
T 2ymu_A          211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN  290 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence            45677889999999999886  7899999999999999954 5677788999999999998  66999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      ......                                 ..+.+|...|.+++|+|++++|++++.|+.|++||... +.
T Consensus       291 ~~~~~~---------------------------------~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~  336 (577)
T 2ymu_A          291 RNGQLL---------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QH  336 (577)
T ss_dssp             TTSCEE---------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE
T ss_pred             CCCcEE---------------------------------EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-Ce
Confidence            654211                                 12345999999999999999999999999999999754 55


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      +..+..|...|.+++++|++ .+++++.|+.|++||...  .     ....+..|...|.+++|+|++++|++++.|+.|
T Consensus       337 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~-----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v  409 (577)
T 2ymu_A          337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--Q-----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  409 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--C-----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--C-----EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEE
Confidence            67788899999999999999 899999999999999642  1     355677899999999999999999999999999


Q ss_pred             EEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728          334 NFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      ++||....  ....+.+|...+.  ++++++++|++++.|+.|++||....   .+..+.+|...|++++|+|+++    
T Consensus       410 ~~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd~~----  480 (577)
T 2ymu_A          410 KLWNRNGQ--LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQ----  480 (577)
T ss_dssp             EEECTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC---EEEEEECCSSCEEEEEECTTSC----
T ss_pred             EEEeCCCC--EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCCCC----
Confidence            99996533  3355667877775  45678999999999999999997543   4678889999999999999999    


Q ss_pred             cceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          412 EKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                          +|++++.|+.|++|+.. +       .....+.+|...|+++    +|+|||++|++++
T Consensus       481 ----~las~~~d~~i~iw~~~-~-------~~~~~~~~h~~~v~~l----~~s~dg~~l~s~~  527 (577)
T 2ymu_A          481 ----TIASASDDKTVKLWNRN-G-------QLLQTLTGHSSSVRGV----AFSPDGQTIASAS  527 (577)
T ss_dssp             ----EEEEEETTSEEEEEETT-S-------CEEEEEECCSSCEEEE----EECTTSSCEEEEE
T ss_pred             ----EEEEEeCCCEEEEEcCC-C-------CEEEEEeCCCCCEEEE----EEcCCCCEEEEEE
Confidence                99999999999999963 3       4566788999999999    6788999988753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-38  Score=302.01  Aligned_cols=278  Identities=17%  Similarity=0.242  Sum_probs=233.2

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      +....+.+|.+.|.+++|+  +.+|++|+.||+|++||..+++...                                .+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--------------------------------~~  102 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--------------------------------AV  102 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------------------------EE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--------------------------------EE
Confidence            3455678999999999998  6799999999999999988765432                                12


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc------ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY------KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR  289 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd  289 (474)
                      ..|...|.+++|+|++.+|++|+.|+.+++|++...      .....+..|...|.++.|++++ .|++++.|++|++||
T Consensus       103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd  182 (354)
T 2pbi_B          103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD  182 (354)
T ss_dssp             ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence            337788999999999999999999999999998643      3456677899999999999998 899999999999999


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEE
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLV  365 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l  365 (474)
                      ++...      ....+.+|...|.+++|+|  ++++|++|+.|+.|++||++++... ..+.+|...+.+  ++|++++|
T Consensus       183 ~~~~~------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l  255 (354)
T 2pbi_B          183 VESGQ------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV-QAFETHESDVNSVRYYPSGDAF  255 (354)
T ss_dssp             TTTCC------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCe------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE-EEecCCCCCeEEEEEeCCCCEE
Confidence            98654      3566778999999999988  5789999999999999999987654 456678777755  45689999


Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccc
Q 047728          366 FSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH  445 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~  445 (474)
                      ++|+.|++|++||++..+.........+...+.+++|+|++.        +|++|+.|+.|++||+.++       ....
T Consensus       256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--------~l~~g~~d~~i~vwd~~~~-------~~~~  320 (354)
T 2pbi_B          256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR--------LLFAGYNDYTINVWDVLKG-------SRVS  320 (354)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTC-------SEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC--------EEEEEECCCcEEEEECCCC-------ceEE
Confidence            999999999999999887443333334456799999999999        9999999999999999876       3456


Q ss_pred             cccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          446 PLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       446 ~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      .+.+|...|.++    +|+|||++|+++|
T Consensus       321 ~l~~h~~~v~~l----~~spdg~~l~sgs  345 (354)
T 2pbi_B          321 ILFGHENRVSTL----RVSPDGTAFCSGS  345 (354)
T ss_dssp             EECCCSSCEEEE----EECTTSSCEEEEE
T ss_pred             EEECCCCcEEEE----EECCCCCEEEEEc
Confidence            678999999999    6788999998864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=313.82  Aligned_cols=283  Identities=14%  Similarity=0.231  Sum_probs=229.8

Q ss_pred             CcEEEEEEc--CC-EEEEe----------eCCCcEEEEeCCcc----ccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728          111 GHIYSLAAA--GD-LLYTG----------SDSKNIRVWKNQRE----FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR  171 (474)
Q Consensus       111 ~~i~~~~~~--~~-~l~tg----------s~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~  171 (474)
                      ..|.+++++  ++ +|++|          +.||.|+|||....    ......|...|.+++|+  +++|++++.||.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            346666655  55 99999          89999999996532    22234588999999998  67999999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~  250 (474)
                      +|++........ .                           ...+.+|...|.+++|+|+ +++|++++.|+.|++||+.
T Consensus        93 vw~~~~~~~~~~-~---------------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           93 LYSTNEANNAIN-S---------------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             EECCSSTTSCCC-E---------------------------EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             Eeeccccccccc-c---------------------------hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            999987321100 0                           0133459999999999998 8999999999999999999


Q ss_pred             Ccc------eeee---eeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc------cccEE
Q 047728          251 DYK------CLES---VIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ------ECAVT  313 (474)
Q Consensus       251 ~~~------~~~~---~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~  313 (474)
                      +++      ....   +..|...|.+++|+|+ + .+++++.||.|++||++....      ...+..+      ...|.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE------VIHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE------EEEECCCCCSSCCCCCEE
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc------ceEEeccccccccCCceE
Confidence            876      3333   3678999999999999 4 899999999999999986432      2233333      78899


Q ss_pred             EEEEcCCC-CEEEEEcCCC---cEEEeecCcccccceeee-ecceeeEEEE--e-cCCEEEEEeCCCcEEEEECCCCceE
Q 047728          314 ALAISPDA-AIVYCGSSDG---LVNFWERELNLSHGGVLR-GHKLAILCLV--T-AGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       314 ~l~~~~~~-~~l~~~~~dg---~i~v~d~~~~~~~~~~~~-~~~~~v~~~~--~-~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      +++|+|++ .+|++++.|+   .|++||+++.......+. +|...+.++.  + ++++|++++.|+.|++||+++++  
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~--  296 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE--  296 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC--
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc--
Confidence            99999987 6899999998   999999998755555666 7887776655  5 78999999999999999999887  


Q ss_pred             EEEeecCCccceEEEEEeeCC-ccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          386 CLSMLTGHSGPVKCLAVEKDD-ESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       386 ~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      .+..+.+|...|.+++|+|++ .        +|++++.|+.|++|++......
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~--------~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPD--------LFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTT--------EEEECCSSSEEEEEESCCCCCS
T ss_pred             cceeecCCCCceEEEEECCCCCC--------EEEEEecCCcEEEEEccCCCCC
Confidence            567888999999999999998 6        8999999999999999887544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-38  Score=308.42  Aligned_cols=314  Identities=16%  Similarity=0.223  Sum_probs=253.3

Q ss_pred             eeeeecCcEEEEEEc--CC-EEEEeeCCCcEEEEeC----Ccc--------cccccc----------CccCEEEEEec--
Q 047728          105 SLVREEGHIYSLAAA--GD-LLYTGSDSKNIRVWKN----QRE--------FSGFKS----------NSGLVKAIVIS--  157 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~--~~-~l~tgs~dg~v~vwd~----~~~--------~~~~~~----------h~~~V~~i~~~--  157 (474)
                      ....|.+.|++++++  ++ +|++|+.||.|++|+.    ...        ...+..          |...|.+++|+  
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            344566899999887  77 9999999999999998    432        222222          68899999998  


Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      +++|++++.||.|++|+. +++..                                ..+.+|...|.+++|+|++++|++
T Consensus       120 ~~~l~~~~~dg~i~i~~~-~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~l~~  166 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWNK-TGALL--------------------------------NVLNFHRAPIVSVKWNKDGTHIIS  166 (425)
T ss_dssp             SSEEEEEETTSCEEEEET-TSCEE--------------------------------EEECCCCSCEEEEEECTTSSEEEE
T ss_pred             CCEEEEEeCCCeEEEEeC-CCCee--------------------------------eeccCCCccEEEEEECCCCCEEEE
Confidence            679999999999999993 32221                                123448999999999999999999


Q ss_pred             EECCCcEEEEEcCCcceeeeeeecCcc---------------eeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          238 ASWDKTFKVWRTSDYKCLESVIAHDDA---------------VNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      ++.|+.|++||+.+++.+..+..+...               +.++.|++++.+++++.||.|++||++....      .
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~------~  240 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP------T  240 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC------S
T ss_pred             EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce------e
Confidence            999999999999999999988887776               9999999999999999999999999986543      4


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECC
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      ..+..|...|.+++|+|++++|++++.|+.|++||++..... ..+..|...+.++  ++++ ++++++.|+.|++||+.
T Consensus       241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~  318 (425)
T 1r5m_A          241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK  318 (425)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS-EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred             eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc-eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence            455678899999999999999999999999999999887554 4455676666554  5566 99999999999999999


Q ss_pred             CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC-------------Ccccccc
Q 047728          381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS-------------TTQQHPL  447 (474)
Q Consensus       381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~-------------~~~~~~~  447 (474)
                      +++  .+..+..|...|.+++|+|++.        +|++++.||.|++|++.+.......             ......+
T Consensus       319 ~~~--~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (425)
T 1r5m_A          319 QNT--LLALSIVDGVPIFAGRISQDGQ--------KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY  388 (425)
T ss_dssp             TTE--EEEEEECTTCCEEEEEECTTSS--------EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE
T ss_pred             CCc--EeEecccCCccEEEEEEcCCCC--------EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh
Confidence            887  4667888999999999999998        9999999999999999876411110             1155677


Q ss_pred             cCCCC--CCCccccCCCCCcCCceeecc
Q 047728          448 EGHGV--APNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       448 ~~~~~--~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .+|..  .|.++    +|+|||++|+++
T Consensus       389 ~~~~~~~~v~~~----~~s~~~~~l~~~  412 (425)
T 1r5m_A          389 QSSQDNDYIFDL----SWNCAGNKISVA  412 (425)
T ss_dssp             CCTTCCCCEEEE----EECTTSSEEEEE
T ss_pred             cCcccCCceEEE----EccCCCceEEEE
Confidence            78866  88888    677888888654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-37  Score=295.27  Aligned_cols=289  Identities=15%  Similarity=0.246  Sum_probs=248.3

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR  171 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~  171 (474)
                      -.......|.+|++.|.+++++  +++|++|+.||.|++||..  +.+..+.+|...|.+++|+  +++|++++.||.|+
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            3445667799999999999986  8899999999999999944  5677888999999999998  67999999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC-----CcEEE
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD-----KTFKV  246 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~i  246 (474)
                      +||+.+++.....                                 .+...|.+++|+|++++|++++.+     +.|++
T Consensus       100 iwd~~~~~~~~~~---------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~  146 (369)
T 3zwl_B          100 LWDVSNGQCVATW---------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI  146 (369)
T ss_dssp             EEETTTCCEEEEE---------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred             EEECCCCcEEEEe---------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence            9999987654322                                 177789999999999999999999     99999


Q ss_pred             EEcCCcc-----------eeeeeeecCc--ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728          247 WRTSDYK-----------CLESVIAHDD--AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV  312 (474)
Q Consensus       247 wd~~~~~-----------~~~~~~~~~~--~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  312 (474)
                      ||+....           .+..+..|..  .+.+++|+|++ .+++++.||.|++||++....     ....+..|...|
T Consensus       147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v  221 (369)
T 3zwl_B          147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-----YVDSIDLHEKSI  221 (369)
T ss_dssp             EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-----EEEEEECCSSCE
T ss_pred             EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-----eEEEEecCCCce
Confidence            9997654           3344555655  89999999999 899999999999999986332     356667789999


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC--------------cEEEEE
Q 047728          313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM--------------SICIWR  378 (474)
Q Consensus       313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg--------------~i~iwd  378 (474)
                      .+++|+|++++|++++.|+.|++||+++...............++++++++++++++.++              .+++||
T Consensus       222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred             eEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            999999999999999999999999999887665555444555677888999999999988              899999


Q ss_pred             CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..+++  .+..+.+|...|++++|+|+++        +|++++.||.|++|++..+
T Consensus       302 ~~~~~--~~~~~~~~~~~v~~~~~s~~~~--------~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          302 KIFEE--EIGRVQGHFGPLNTVAISPQGT--------SYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             TTTCC--EEEEEECCSSCEEEEEECTTSS--------EEEEEETTSEEEEEEECHH
T ss_pred             cCCCc--chhheecccCcEEEEEECCCCC--------EEEEEcCCCeEEEEECccc
Confidence            99887  5678889999999999999999        9999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.7e-39  Score=310.28  Aligned_cols=315  Identities=15%  Similarity=0.176  Sum_probs=244.2

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCCcc--ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQRE--FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      .++++++++|++|+.||.|++||....  ...+..| ..+....++  +++|++++.||.|++||+.+++...       
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------  133 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE-------  133 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-------
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-------
Confidence            356777999999999999999996633  3344444 333333444  7799999999999999998664321       


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  269 (474)
                                               .+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++
T Consensus       134 -------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          134 -------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA  188 (420)
T ss_dssp             -------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred             -------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence                                     2235999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc---------------------ccEEEEEEcCCCCEEEEE
Q 047728          270 AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE---------------------CAVTALAISPDAAIVYCG  327 (474)
Q Consensus       270 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------------~~v~~l~~~~~~~~l~~~  327 (474)
                      |+|++ .|++++.|+.|++||++......   .......+.                     ..+.+++|+|++++|+++
T Consensus       189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (420)
T 3vl1_A          189 IIDRGRNVLSASLDGTIRLWECGTGTTIH---TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG  265 (420)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEEEE---EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred             EcCCCCEEEEEcCCCcEEEeECCCCceeE---EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence            99999 89999999999999997543211   111111233                     344455567899999999


Q ss_pred             cCCCcEEEeecCcccccceeeeecceeeEEE--EecCC-EEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEe
Q 047728          328 SSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGN-LVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVE  403 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~  403 (474)
                      +.||.|++||+++..........|...+.++  ++++. +|++|+.||.|++||+++++.. +..+.. |...|.++.+ 
T Consensus       266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~-  343 (420)
T 3vl1_A          266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP-VGEFLINEGTPINNVYF-  343 (420)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-SEEEEESTTSCEEEEEE-
T ss_pred             cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-hhhhhccCCCCceEEEe-
Confidence            9999999999998877766666677666555  45677 9999999999999999987542 344554 6778888855 


Q ss_pred             eCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC--CcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS--TTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      +++.        +|++++.|+.|++|++.....+...  ......+.+|...+.+++|+|..+.||++++.++
T Consensus       344 ~~~~--------~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          344 AAGA--------LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             ETTE--------EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             CCCC--------EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            5777        8999999999999999875433221  1233346678899999988888887887888764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-38  Score=298.54  Aligned_cols=290  Identities=20%  Similarity=0.288  Sum_probs=230.2

Q ss_pred             cccccccCcc-CEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          140 EFSGFKSNSG-LVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       140 ~~~~~~~h~~-~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      .+..+.+|.. .|.+++|+  +++|++|+.|++|+||++..+.......                             ..
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~-----------------------------~~   57 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-----------------------------LS   57 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE-----------------------------EC
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee-----------------------------ec
Confidence            3456778987 89999998  6799999999999999998764321111                             12


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc--ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY--KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      .+|...|.+++|+|++++|++|+.|++|++||+.++  +++..+.+|...|.+++|+|++ +|++++.|+.|++||++..
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            359999999999999999999999999999999876  4677888999999999999999 9999999999999999754


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-cceeeeecceeeEE--EEecCCEEEEEeC
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-HGGVLRGHKLAILC--LVTAGNLVFSGSA  370 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~--~~~~~~~l~sgs~  370 (474)
                      ..   ......+..|...|.+++|+|++++|++++.|+.|++||.+.... ....+.+|...|.+  +++++++|++|+.
T Consensus       138 ~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          138 DE---YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             SC---EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CC---eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            32   223456678899999999999999999999999999999876542 23456778877755  5567999999999


Q ss_pred             CCcEEEEECCCC-------------ceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          371 DMSICIWRRKEN-------------EHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       371 dg~i~iwd~~~~-------------~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      |++|+|||....             ...++..+.+ |...|.+++|+|++.        .|++++.|+.|++|++.....
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--------~l~s~~~d~~i~vw~~~~~~~  286 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG--------ALATACGDDAIRVFQEDPNSD  286 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC--------CEEEEETTSCEEEEEECTTSC
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC--------EEEEEeCCCeEEEEEeCCCCC
Confidence            999999996321             1123445554 889999999999998        899999999999999976543


Q ss_pred             CCCCC--cccccccCCCCCCCccccCCCCCcCC-ceeecc
Q 047728          437 PLVST--TQQHPLEGHGVAPNSLPYAPSFSSQG-RICQKR  473 (474)
Q Consensus       437 ~~~~~--~~~~~~~~~~~~v~~l~~~p~~s~Dg-~~l~~~  473 (474)
                      +....  ...+...+|...|++++|    +||+ .+++++
T Consensus       287 ~~~~~~~~~~~~~~~h~~~V~~v~~----~p~~~~~laS~  322 (345)
T 3fm0_A          287 PQQPTFSLTAHLHQAHSQDVNCVAW----NPKEPGLLASC  322 (345)
T ss_dssp             TTSCCEEEEEEETTSSSSCEEEEEE----CSSSTTEEEEE
T ss_pred             cceeeEEEEeeecccccCcEeEeEE----eCCCceEEEEc
Confidence            32111  122345689999999954    5555 366654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.8e-38  Score=307.40  Aligned_cols=301  Identities=20%  Similarity=0.267  Sum_probs=252.1

Q ss_pred             eeeeeeeeecCc-EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecC
Q 047728          101 VLIGSLVREEGH-IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       101 ~~~~~l~~h~~~-i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~  176 (474)
                      .....+.+|.+. +.++.+++++|++|+.||+|++||..  +.+..+.+|.+.|.+++|+ ++.|++|+.||+|++||++
T Consensus       112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred             cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence            345678899887 68899999999999999999999954  5677788999999999998 4599999999999999998


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec--CCCCEEEEEECCCcEEEEEcCCcce
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS--EDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +++...                                .+.+|...|.+++|+  +++.+|++|+.|++|++||+.++..
T Consensus       192 ~~~~~~--------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~  239 (464)
T 3v7d_B          192 KGCCTH--------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  239 (464)
T ss_dssp             TTEEEE--------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred             CCcEEE--------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence            875432                                234599999999998  5778999999999999999987653


Q ss_pred             -----------------------eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728          255 -----------------------LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC  310 (474)
Q Consensus       255 -----------------------~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (474)
                                             +..+.+|...|.++.  +++ .+++++.||.|++||++...      ....+..|..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~  311 (464)
T 3v7d_B          240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMK------CLYILSGHTD  311 (464)
T ss_dssp             C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTE------EEEEECCCSS
T ss_pred             cccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCc------EEEEecCCCC
Confidence                                   445677888888874  445 99999999999999997543      3556678999


Q ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728          311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML  390 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  390 (474)
                      .|.+++|+|++++|++++.|+.|++||++++... ..+.+|...+.++.+++++|++|+.||.|++||+.+....  ...
T Consensus       312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~  388 (464)
T 3v7d_B          312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELM-YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK--FSY  388 (464)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE--EEE
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee--eee
Confidence            9999999999999999999999999999887654 5667899999999999999999999999999999987633  222


Q ss_pred             cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728          391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA  460 (474)
Q Consensus       391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  460 (474)
                       .|...+..++|++++.        +|++|+ ||.|++||+.+++..      ...+..|...|.+++|+
T Consensus       389 -~~~~~~~~~~~~~~~~--------~l~~~~-dg~i~iwd~~~g~~~------~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          389 -HHTNLSAITTFYVSDN--------ILVSGS-ENQFNIYNLRSGKLV------HANILKDADQIWSVNFK  442 (464)
T ss_dssp             -ECTTCCCEEEEEECSS--------EEEEEE-TTEEEEEETTTCCEE------ESCTTTTCSEEEEEEEE
T ss_pred             -cCCCCccEEEEEeCCC--------EEEEec-CCeEEEEECCCCcEE------ehhhccCCCcEEEEEec
Confidence             3667888999999998        899988 899999999987422      11255678888888664

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.8e-38  Score=324.35  Aligned_cols=283  Identities=24%  Similarity=0.390  Sum_probs=232.7

Q ss_pred             eeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-------cccccccCccCEEEEEec--CCEEEEEeCCC
Q 047728          101 VLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDG  168 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg  168 (474)
                      .+.+.+.+|++.|++++++   +++|+||+.||+|++|+...       ....+.+|...|.+++|+  +++|++|+.||
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4556799999999999986   46999999999999998643       235678999999999998  67999999999


Q ss_pred             eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728          169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR  248 (474)
Q Consensus       169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd  248 (474)
                      +|+|||+.++....                                .+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus       453 ~v~vwd~~~~~~~~--------------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          453 ELRLWDLAAGVSTR--------------------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEEEETTTTEEEE--------------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEEEEECCCCccee--------------------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            99999998765431                                3456999999999999999999999999999999


Q ss_pred             cCCcceeeee---eecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728          249 TSDYKCLESV---IAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       249 ~~~~~~~~~~---~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  322 (474)
                      +.........   .+|...|.+++|+|++   .+++++.|+.|++||++...      ....+..|...|++++|+|+++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~  574 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------LRSTLAGHTGYVSTVAVSPDGS  574 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc------EEEEEcCCCCCEEEEEEeCCCC
Confidence            8654333222   4688899999999986   79999999999999998543      3566778999999999999999


Q ss_pred             EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC---------
Q 047728          323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH---------  393 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h---------  393 (474)
                      +|++++.|+.|++||++++..+...........+++++++.+|++++ |+.|+|||+++++..  ..+..+         
T Consensus       575 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~  651 (694)
T 3dm0_A          575 LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV--EDLKVDLKAEAEKAD  651 (694)
T ss_dssp             EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE--EEECCCCC-------
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh--hhhcccccccccccc
Confidence            99999999999999999887654443333445577778888887766 566999999988733  333221         


Q ss_pred             ----------ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          394 ----------SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       394 ----------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                                ...+++++|+|+++        +|++|+.||+|+||++.
T Consensus       652 ~~~~~~~~~~~~~~~~l~~spdg~--------~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          652 NSGPAATKRKVIYCTSLNWSADGS--------TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ---------CCCCEEEEEECTTSS--------EEEEEETTSEEEEEEC-
T ss_pred             ccccccCCceeEEeeeEEEcCCCC--------EEEEEcCCCeEEEEecc
Confidence                      12478999999999        99999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.4e-38  Score=293.95  Aligned_cols=274  Identities=24%  Similarity=0.380  Sum_probs=230.4

Q ss_pred             ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ...+.+|...|.+++|+  +++|++++.||.|++|++.+++...                                .+.+
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------------------~~~~   63 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------------------------------TISG   63 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------------EECC
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--------------------------------hhcc
Confidence            45678899999999998  6799999999999999998765432                                2345


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      |...|.+++|+|++++|++++.|+.|++||+++++++..+..|...|.++.|+|++ .+++++.|+.|++||++...   
T Consensus        64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---  140 (312)
T 4ery_A           64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---  140 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---
T ss_pred             CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE---
Confidence            99999999999999999999999999999999999999999999999999999998 99999999999999998654   


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSIC  375 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~  375 (474)
                         ....+..|...|.+++|+|++++|++++.|+.|++||++++.........+...+  +++++++++|++++.|+.|+
T Consensus       141 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          141 ---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             ---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ---EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence               3456677889999999999999999999999999999998766655544444444  66778899999999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEE--EEEe-eCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKC--LAVE-KDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV  452 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~--l~~~-~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  452 (474)
                      +||+.+++  ++..+.+|...+.+  ..++ +++.        +|++|+.||.|++||+.++       .....+.+|..
T Consensus       218 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~  280 (312)
T 4ery_A          218 LWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGK--------WIVSGSEDNLVYIWNLQTK-------EIVQKLQGHTD  280 (312)
T ss_dssp             EEETTTTE--EEEEECSSCCSSSCCCEEEECSSSC--------EEEECCTTSCEEEEETTTC-------CEEEEECCCSS
T ss_pred             EEECCCCc--EEEEEEecCCceEEEEEEEEeCCCc--------EEEEECCCCEEEEEECCCc-------hhhhhhhccCC
Confidence            99999887  46677777765433  3344 4555        8999999999999999876       45667889999


Q ss_pred             CCCccccCCCCCcCCceeecc
Q 047728          453 APNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       453 ~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .|.++    +|+|++++++++
T Consensus       281 ~v~~~----~~~p~~~~l~s~  297 (312)
T 4ery_A          281 VVIST----ACHPTENIIASA  297 (312)
T ss_dssp             CEEEE----EECSSSSEEEEE
T ss_pred             cEEEE----eecCcCCceEEE
Confidence            99988    455667766653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.1e-39  Score=306.98  Aligned_cols=293  Identities=18%  Similarity=0.228  Sum_probs=233.6

Q ss_pred             EEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEE
Q 047728          132 IRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIE  207 (474)
Q Consensus       132 v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (474)
                      +..|+..  .....+.+|.+.|.+++|+  +++|++|+.||+|++||+.+++...                         
T Consensus        48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-------------------------  102 (380)
T 3iz6_a           48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-------------------------  102 (380)
T ss_dssp             CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-------------------------
T ss_pred             ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-------------------------
Confidence            3445533  3456788999999999998  6799999999999999998775432                         


Q ss_pred             EeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-------eeeeeeecCcceeEEEecCCC--eEEE
Q 047728          208 VRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-------CLESVIAHDDAVNSIVAGFDG--LVFT  278 (474)
Q Consensus       208 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~v~~~~~~--~l~~  278 (474)
                             .+..|...|.+++|+|++++|++|+.|+.|++||+.+..       ....+.+|.+.|.++.|.|++  .|++
T Consensus       103 -------~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s  175 (380)
T 3iz6_a          103 -------AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT  175 (380)
T ss_dssp             -------EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE
T ss_pred             -------EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE
Confidence                   234589999999999999999999999999999987532       345678899999999999975  7999


Q ss_pred             eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--
Q 047728          279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--  355 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--  355 (474)
                      |+.|++|++||++.+.... ........+|...|.+++|++ ++++|++|+.|+.|++||++........+.+|...|  
T Consensus       176 ~s~D~~i~~wd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~  254 (380)
T 3iz6_a          176 GSGDQTCVLWDVTTGQRIS-IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS  254 (380)
T ss_dssp             ECTTSCEEEECTTTCCEEE-EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred             ECCCCcEEEEEcCCCcEEE-EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence            9999999999998654311 011112257888999999987 889999999999999999986655556777888777  


Q ss_pred             EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-------ccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728          356 LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-------SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       356 ~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                      ++++|++++|++|+.|++|++||+++++.  +..+..+       ...|++++|+|++.        +|++|+.||.|++
T Consensus       255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~l~~g~~dg~i~v  324 (380)
T 3iz6_a          255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGR--------LLFAGYSNGDCYV  324 (380)
T ss_dssp             EEECTTSSEEEEECSSSCEEEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSS--------EEEEECTTSCEEE
T ss_pred             EEEecCCCeEEEEcCCCeEEEEECCCCcE--EEEecccccccccccCceEEEEECCCCC--------EEEEEECCCCEEE
Confidence            45566899999999999999999998874  3444333       23589999999999        9999999999999


Q ss_pred             EEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          429 WRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ||+..++...   .......+|...|+++    +|+|||++|+++|
T Consensus       325 wd~~~~~~~~---~~~~~~~~h~~~v~~l----~~s~dg~~l~sgs  363 (380)
T 3iz6_a          325 WDTLLAEMVL---NLGTLQNSHEGRISCL----GLSSDGSALCTGS  363 (380)
T ss_dssp             EETTTCCEEE---EECCSCSSCCCCCCEE----EECSSSSEEEEEC
T ss_pred             EECCCCceEE---EEecccCCCCCceEEE----EECCCCCEEEEee
Confidence            9998763221   1112236799999999    7788999998875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8e-38  Score=301.41  Aligned_cols=291  Identities=15%  Similarity=0.198  Sum_probs=240.0

Q ss_pred             ceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--c------cccccccCccCEEEEEec------C---CEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--R------EFSGFKSNSGLVKAIVIS------N---EKIF  162 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~------~~~~~~~h~~~V~~i~~~------~---~~l~  162 (474)
                      ......+.+|++.|+++++++++|++|+.||.|++||..  +      ....+..|...|.+++|+      +   ++|+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            345677889999999999999999999999999999954  2      466778999999999997      3   6899


Q ss_pred             EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec-----cCCeeEEEec----CCCC
Q 047728          163 SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH-----FDAISSLSMS----EDQN  233 (474)
Q Consensus       163 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~~----~~~~  233 (474)
                      +++.||.|++|++.+++.......                           ..+..|     ...|.+++|+    |+++
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  138 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIF---------------------------EKLDLLDSDMKKHSFWALKWGASNDRLLS  138 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEE---------------------------EEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred             EEcCCCCEEEEEccCCcccccccc---------------------------eeecccccccCCCcEEEEEEeeccCCCCc
Confidence            999999999999988764211101                           122335     5899999999    9999


Q ss_pred             E-EEEEECCCcEEEEEcCC------cceee-----eeee-------cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728          234 L-LYSASWDKTFKVWRTSD------YKCLE-----SVIA-------HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       234 ~-l~s~s~dg~i~iwd~~~------~~~~~-----~~~~-------~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~  294 (474)
                      + |++++.|+.|++||+.+      ++.+.     .+.+       |...|.+++|+|++.+++++.||.|++||++...
T Consensus       139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  218 (397)
T 1sq9_A          139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR  218 (397)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE
T ss_pred             eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCc
Confidence            9 99999999999999998      77776     7744       8899999999999888899999999999998543


Q ss_pred             Cceeeeeeeeeec---c---cccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeee-------------cc
Q 047728          295 KGTKHFFSQTLLK---Q---ECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRG-------------HK  352 (474)
Q Consensus       295 ~~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~-------------~~  352 (474)
                            ....+..   |   ...|.+++|+|++++|++++.|   +.|++||+++..... .+..             |.
T Consensus       219 ------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          219 ------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             ------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBS
T ss_pred             ------eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-eeccCcccccccccccccC
Confidence                  2444555   7   8899999999999999999999   999999998876553 4444             77


Q ss_pred             eeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeec------CC---------------ccceEEEEEeeCC---
Q 047728          353 LAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLT------GH---------------SGPVKCLAVEKDD---  406 (474)
Q Consensus       353 ~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~---  406 (474)
                      ..+.+  +++++++|++++.||.|++||+.+++  ++..+.      +|               ..+|++++|+|++   
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            66655  45679999999999999999999887  456676      77               9999999999998   


Q ss_pred             -------ccccccceEEEEEecCCCcEEEEEccCC
Q 047728          407 -------ESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       407 -------~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                             .        +|++++.||.|++|++.++
T Consensus       370 ~~~~~~~~--------~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          370 GMGADLNE--------SLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             STTCTTSC--------EEEEEETTTEEEEEEEEC-
T ss_pred             cccccccc--------eEEEecCCCcEEEEEcCCC
Confidence                   5        8999999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.7e-37  Score=287.78  Aligned_cols=281  Identities=18%  Similarity=0.289  Sum_probs=235.0

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-----cccccc--cCccCEEEEEec--CCEEEEEeCCCe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-----EFSGFK--SNSGLVKAIVIS--NEKIFSGHQDGK  169 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-----~~~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~  169 (474)
                      .......+|.+.|.+++++  +++|++++ ||.|++||...     .+..+.  .|...|.+++|+  +++|++++.||.
T Consensus        42 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  120 (337)
T 1gxr_A           42 ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            3444455899999999886  78999999 99999999653     222222  789999999998  668999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      |++||+.+++.....                              .+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus       121 i~~~d~~~~~~~~~~------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKA------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             EEEEECCCC--EEEE------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEECCCCCcceee------------------------------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            999999887532211                              23448889999999999999999999999999999


Q ss_pred             CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      ++++.+..+..|...|.+++|+|++ .+++++.||.|++||++....       .....+...+.+++|+|++++|++++
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-------LQQHDFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-------EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-------EeeecCCCceEEEEECCCCCEEEEEc
Confidence            9999999999999999999999999 999999999999999985432       22235678899999999999999999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      .++.|++||++.....  ....|...+.  ++++++++|++++.||.|++||+.+++..   ....|...|.+++|+|++
T Consensus       244 ~~~~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          244 ESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---FQSKESSSVLSCDISVDD  318 (337)
T ss_dssp             TTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECSSCEEEEEECTTS
T ss_pred             CCCcEEEEECCCCCeE--EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE---EEecCCCcEEEEEECCCC
Confidence            9999999999887543  4456666664  45567999999999999999999988743   334588899999999999


Q ss_pred             ccccccceEEEEEecCCCcEEEEEcc
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +        +|++++.||.|++|++.
T Consensus       319 ~--------~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          319 K--------YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             C--------EEEEEETTSCEEEEEEE
T ss_pred             C--------EEEEecCCCeEEEEEEe
Confidence            9        99999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-38  Score=294.21  Aligned_cols=290  Identities=20%  Similarity=0.271  Sum_probs=218.5

Q ss_pred             cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          140 EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      .+..+.+|.+.|.+++|++++|++|+.|++|++|++..+.........                            ..+|
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~----------------------------~~~h   57 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLD----------------------------ETAH   57 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEEC----------------------------TTCC
T ss_pred             cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEe----------------------------cCCc
Confidence            456678999999999999889999999999999999865322111100                            0128


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcc
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~  291 (474)
                      ...|.+++|+|++++|++|+.|++|++||+..       .+++..+.+|...|.+++|+|++ +|++|+.|+.|++||++
T Consensus        58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999999999999853       35677788999999999999999 99999999999999995


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-ccceeeeecceeeEEEEe--c--CCEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-SHGGVLRGHKLAILCLVT--A--GNLVF  366 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~--~--~~~l~  366 (474)
                      ....  .......+..|...|.+++|+|++.+|++++.|+.|++||..... .....+.+|...|.++.+  +  +.+|+
T Consensus       138 ~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          138 ESGE--EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             TTCC--CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             CCCC--CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            3321  112345677899999999999999999999999999999987542 334567788888866654  4  56899


Q ss_pred             EEeCCCcEEEEECCCCc------eEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728          367 SGSADMSICIWRRKENE------HICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV  439 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~~------~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~  439 (474)
                      +|+.|++|++||+....      ..+...+.. |...|.+++|++++         +|++++.||.|+||++.++...  
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---------~l~s~~~dg~v~iw~~~~~~~~--  284 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG---------LIASVGADGVLAVYEEVDGEWK--  284 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS---------CEEEEETTSCEEEEEEETTEEE--
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC---------EEEEEeCCCEEEEEEcCCCceE--
Confidence            99999999999986531      123445554 99999999999654         5999999999999998765210  


Q ss_pred             CCcccccccCCCC-CCCccccCCCCCcCCceeeccC
Q 047728          440 STTQQHPLEGHGV-APNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       440 ~~~~~~~~~~~~~-~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                        .......+|.. .|++++|+|.  .|+++|+++|
T Consensus       285 --~~~~~~~~h~~~~v~~v~~~~~--~~~~~las~s  316 (330)
T 2hes_X          285 --VFAKRALCHGVYEINVVKWLEL--NGKTILATGG  316 (330)
T ss_dssp             --EEEEESCTTTTSCEEEEEEC-------CCEEEEE
T ss_pred             --EEeccccccccceEEEEEEecC--CCceEEEEec
Confidence              11223356776 7888855432  1677777653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-38  Score=301.29  Aligned_cols=295  Identities=15%  Similarity=0.173  Sum_probs=210.5

Q ss_pred             CEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeC------CCeEEEEecCCCCcceeeeecccCcc
Q 047728          121 DLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQ------DGKIRVWKVSSKDASIHKRVGTLPTF  192 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~  192 (474)
                      ++++.++.+.....|+...  .....|...|.+++|+  |.+|++|+.      |+.|++|+..++.......       
T Consensus        17 ~~~~~~~g~~~~~~w~~p~--~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~-------   87 (357)
T 4g56_B           17 NLYFQSNGSSKGSAWGRPV--TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC-------   87 (357)
T ss_dssp             -------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC-------
T ss_pred             ceEEecCCCccccccCCCC--CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe-------
Confidence            3445555567788998542  2345799999999998  779999997      7789999887764321111       


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee----eeecCcceeEE
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES----VIAHDDAVNSI  268 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~v~~v  268 (474)
                                           ....+|...|.+++|+|++. +++++.||+|++||+.+++....    ..+|...|.++
T Consensus        88 ---------------------~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v  145 (357)
T 4g56_B           88 ---------------------TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL  145 (357)
T ss_dssp             ---------------------SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred             ---------------------cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence                                 12345899999999999875 56788999999999988775432    34789999999


Q ss_pred             EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccce
Q 047728          269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGG  346 (474)
Q Consensus       269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~  346 (474)
                      +|+|++ +|++|+.|+.|++||++.+.      ....+..|...|++++|++++. ++++++.|+.|++||++++.....
T Consensus       146 ~~spdg~~l~sgs~dg~v~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~  219 (357)
T 4g56_B          146 SVFSDGTQAVSGGKDFSVKVWDLSQKA------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR  219 (357)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCc------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence            999999 89999999999999998543      3566778999999999999874 788999999999999988765543


Q ss_pred             ee-eecceeeEEE--Eec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728          347 VL-RGHKLAILCL--VTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       347 ~~-~~~~~~v~~~--~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      .. ..+...+.++  +|+ +.+|++|+.|+.|++||+++++  ++..+.+|...|++++|+|++..       +|++|+.
T Consensus       220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~-------~lasgs~  290 (357)
T 4g56_B          220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVHSQNITGLAYSYHSSP-------FLASISE  290 (357)
T ss_dssp             CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEECCCSSCEEEEEECSSSSC-------CEEEEET
T ss_pred             eeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEeccceeEEEEEEcCCCCC-------EEEEEeC
Confidence            32 3444555554  455 6789999999999999999887  45678899999999999998753       7999999


Q ss_pred             CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCc-CCceeecc
Q 047728          423 DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSS-QGRICQKR  473 (474)
Q Consensus       423 Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~-Dg~~l~~~  473 (474)
                      |++|+|||+.+++       ... ..+|...|++++|    +| |+++|+++
T Consensus       291 D~~i~iwd~~~~~-------~~~-~~~H~~~V~~vaf----sP~d~~~l~s~  330 (357)
T 4g56_B          291 DCTVAVLDADFSE-------VFR-DLSHRDFVTGVAW----SPLDHSKFTTV  330 (357)
T ss_dssp             TSCEEEECTTSCE-------EEE-ECCCSSCEEEEEE----CSSSTTEEEEE
T ss_pred             CCEEEEEECCCCc-------EeE-ECCCCCCEEEEEE----eCCCCCEEEEE
Confidence            9999999998762       222 3479999999954    54 67777765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.1e-38  Score=292.23  Aligned_cols=283  Identities=20%  Similarity=0.308  Sum_probs=225.2

Q ss_pred             ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ...+.+|.+.|.+++|+   +++|++|+.|++|++|++.........                           ....+.
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~---------------------------~~~~~~   62 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV---------------------------PVRSFK   62 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE---------------------------EEEEEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc---------------------------cceEEe
Confidence            34678999999999997   368999999999999998754322111                           112456


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+++|+.|++|++||++..   
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---  139 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---  139 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence            799999999999999999999999999999999999999999999999999999998 9999999999999998632   


Q ss_pred             eeeeeeeeeecccccEEEEEEcCC------CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEE
Q 047728          297 TKHFFSQTLLKQECAVTALAISPD------AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSG  368 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  368 (474)
                          ....+.+|...|.+++|.|.      +..|++++.|+.|++||++..... ..+.+|...+.+  ++|++++|++|
T Consensus       140 ----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          140 ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             ----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE-EEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             ----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-eeecCCCCcEEEEEEcCCCCEEEEE
Confidence                35567789999999999995      448999999999999999876543 455678777754  56689999999


Q ss_pred             eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCc-ccccc
Q 047728          369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTT-QQHPL  447 (474)
Q Consensus       369 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~-~~~~~  447 (474)
                      +.||.|++||+.+++  ++..+.. ...|.+++|+|++.        +|++++.+ .|++|++........... .....
T Consensus       215 ~~dg~i~iwd~~~~~--~~~~~~~-~~~v~~~~~sp~~~--------~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~  282 (319)
T 3frx_A          215 GKDGEIMLWNLAAKK--AMYTLSA-QDEVFSLAFSPNRY--------WLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYS  282 (319)
T ss_dssp             ETTCEEEEEETTTTE--EEEEEEC-CSCEEEEEECSSSS--------EEEEEETT-EEEEEEETTEEEEEEECCCCTTCC
T ss_pred             eCCCeEEEEECCCCc--EEEEecC-CCcEEEEEEcCCCC--------EEEEEcCC-CcEEEEeCcCeeeeccCccccccc
Confidence            999999999999887  3455554 46899999999998        78887755 599999876422111000 11111


Q ss_pred             cCCCCCCCccccCCCCCcCCceeeccC
Q 047728          448 EGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       448 ~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ..|...+.++    +|||||++|+++|
T Consensus       283 ~~~~~~v~~~----~~spdg~~l~sg~  305 (319)
T 3frx_A          283 KAAEPHAVSL----AWSADGQTLFAGY  305 (319)
T ss_dssp             GGGCCCEEEE----EECTTSSEEEEEE
T ss_pred             cCcCcceeEE----EECCCCCEEEEee
Confidence            2344455666    7899999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.9e-37  Score=294.05  Aligned_cols=288  Identities=14%  Similarity=0.118  Sum_probs=231.4

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--C-CEEEEeeCCCcEEEEeCC--cccccc--ccCccCEEEEEecC---CEEEEEeCC
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--G-DLLYTGSDSKNIRVWKNQ--REFSGF--KSNSGLVKAIVISN---EKIFSGHQD  167 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~-~~l~tgs~dg~v~vwd~~--~~~~~~--~~h~~~V~~i~~~~---~~l~s~~~d  167 (474)
                      .+..+...+.+|.+.|++++++  + ++|++|+.||.|+|||..  +....+  .+|...|.+++|++   ++|++++.|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            3456778899999999999987  5 799999999999999965  333333  36999999999974   689999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW  247 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw  247 (474)
                      +.|++||+....... ..                             ...+|...|.+++|+|++++|++++.|+.|++|
T Consensus       141 ~~i~iwd~~~~~~~~-~~-----------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          141 GATTLRDFSGSVIQV-FA-----------------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             TEEEEEETTSCEEEE-EE-----------------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCceEE-Ee-----------------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            999999998532211 10                             011256889999999999999999999999999


Q ss_pred             EcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEE
Q 047728          248 RTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIV  324 (474)
Q Consensus       248 d~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l  324 (474)
                      |+ +++.+..+..|...|.+++|+|++  .+++++.|+.|++||++.......  ... ...|...|.+++|+| ++.+|
T Consensus       191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~-~~~~~~~v~~~~~s~~~~~~l  266 (383)
T 3ei3_B          191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS--YIA-EMPHEKPVNAAYFNPTDSTKL  266 (383)
T ss_dssp             ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC--EEE-EEECSSCEEEEEECTTTSCEE
T ss_pred             EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc--eEE-EecCCCceEEEEEcCCCCCEE
Confidence            99 578889999999999999999998  799999999999999987432111  122 226889999999999 99999


Q ss_pred             EEEcCCCcEEEeecCcccccceeeeecc-------e------------eeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728          325 YCGSSDGLVNFWERELNLSHGGVLRGHK-------L------------AILCLVTAGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       325 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~-------~------------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      ++++.|+.|++||+++....... .+|.       .            ..+++++++++  +|+.|+.|++||+.+++. 
T Consensus       267 ~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~-  342 (383)
T 3ei3_B          267 LTTDQRNEIRVYSSYDWSKPDQI-IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL-  342 (383)
T ss_dssp             EEEESSSEEEEEETTBTTSCSEE-EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-
T ss_pred             EEEcCCCcEEEEECCCCcccccc-ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce-
Confidence            99999999999999887655333 2221       1            11444556666  778999999999998884 


Q ss_pred             EEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          386 CLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       386 ~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                       +..+.+  |...+.+++|+|++.        +|++|+ |+.|+||++++
T Consensus       343 -~~~l~~~~~~~~~~~~~~s~~g~--------~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          343 -VHQLRDPNAAGIISLNKFSPTGD--------VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             -EEEECBTTBCSCCCEEEECTTSS--------EEEEEE-TTEEEEEECC-
T ss_pred             -eeeecCCCCCceEEEEEEecCcc--------EEEEec-CCcEEEEecCC
Confidence             556655  567888889999999        899997 99999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-37  Score=293.67  Aligned_cols=289  Identities=18%  Similarity=0.280  Sum_probs=221.4

Q ss_pred             cccccccCccCEEEEEe--------cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeee
Q 047728          140 EFSGFKSNSGLVKAIVI--------SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRH  211 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~--------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (474)
                      ....+.+|.+.|++++|        ++.+|++|+.|++|++||+...+......                         .
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~-------------------------~   67 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG-------------------------I   67 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-------------------------E
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-------------------------c
Confidence            34568899999999999        35699999999999999997654211000                         0


Q ss_pred             ccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEc
Q 047728          212 RNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRR  290 (474)
Q Consensus       212 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~  290 (474)
                      ....+.+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...|.+++|+|++ .|++++.|+.|++||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            112456799999999999999999999999999999999999999999999999999999999 9999999999999998


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCC----------CEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--E
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDA----------AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--L  358 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~  358 (474)
                      ....    .........|...|.+++|+|++          .+|++++.|+.|++||...  .....+.+|...+.+  +
T Consensus       148 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          148 LGEC----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             SSCE----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEE
T ss_pred             cCCc----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEE
Confidence            6211    11122233688899999999986          7999999999999999543  233456678777754  5


Q ss_pred             EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728          359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL  438 (474)
Q Consensus       359 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~  438 (474)
                      ++++++|++|+.|+.|++||+...... ...+ .+...|.+++|+|++.        +|++ +.|+.|++|++.+.....
T Consensus       222 s~~g~~l~sgs~dg~v~iwd~~~~~~~-~~~~-~~~~~v~~v~~sp~~~--------~la~-~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          222 SPNGKYIATGGKDKKLLIWDILNLTYP-QREF-DAGSTINQIAFNPKLQ--------WVAV-GTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             CTTSSEEEEEETTCEEEEEESSCCSSC-SEEE-ECSSCEEEEEECSSSC--------EEEE-EESSCEEEEESSSCCSCS
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccc-ceee-cCCCcEEEEEECCCCC--------EEEE-ECCCCEEEEEeCCCCCCc
Confidence            568999999999999999999543321 2223 2456799999999987        6654 568889999998764332


Q ss_pred             C--CC----cccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          439 V--ST----TQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       439 ~--~~----~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      .  ..    .......+|...+.++    +|+|||++|++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~~----~~sp~g~~l~sg~  328 (343)
T 2xzm_R          291 VCTIEAEPITKAEGQKGKNPQCTSL----AWNALGKKLFAGF  328 (343)
T ss_dssp             EEECCCCSGGGBTTBCCSCCCEEEE----EECSSSCCEEEEE
T ss_pred             eEEeecCcchhhhhhcCCCCceEEE----EECCCCCeEEEec
Confidence            1  00    0111233677778888    6777888887753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.3e-38  Score=296.46  Aligned_cols=289  Identities=17%  Similarity=0.168  Sum_probs=212.0

Q ss_pred             EEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEee
Q 047728          133 RVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR  210 (474)
Q Consensus       133 ~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (474)
                      +.|+....  ....|...|.+++|+  |.+|++++ |+++++||........   ....+.                  .
T Consensus        17 r~w~~~~~--~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~---~~~~~~------------------~   72 (344)
T 4gqb_B           17 REWNLPPN--APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD---PCAAPN------------------E   72 (344)
T ss_dssp             ------CC--SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS---GGGTTC------------------G
T ss_pred             cccCCCCC--CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc---ccccCC------------------c
Confidence            56664322  123467789999998  55677666 7788988742110000   000000                  0


Q ss_pred             eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee----eecCcceeEEEecCCC-eEEEeeCCCcE
Q 047728          211 HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV----IAHDDAVNSIVAGFDG-LVFTGSADGTV  285 (474)
Q Consensus       211 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~~v~~v~~~~~~-~l~~~~~dg~i  285 (474)
                      ........|...|.+++|+|++ .|++|+.||+|+|||+.+++.+..+    .+|.+.|++++|+|++ +|++|+.|++|
T Consensus        73 ~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i  151 (344)
T 4gqb_B           73 GFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI  151 (344)
T ss_dssp             GGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence            0001223477889999999985 7889999999999999998765543    4799999999999999 99999999999


Q ss_pred             EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcccccceee-eecceee--EEEEe-
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGVL-RGHKLAI--LCLVT-  360 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~v--~~~~~-  360 (474)
                      ++||++.+.      ....+.+|...|.+++|++++ .+|++++.|+.|++||++++.....+. ..+...+  +++++ 
T Consensus       152 ~iwd~~~~~------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          152 KVWDLAQQV------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             EEEETTTTE------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred             EEEECCCCc------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence            999998643      456778899999999999987 578999999999999999876654432 2333334  45555 


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC
Q 047728          361 AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS  440 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~  440 (474)
                      ++++|++|+.||.|+|||+++++  ++..+.+|...|++++|+|++..       +|++|+.|++|+|||+.+++     
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~-------~lasgs~D~~i~vwd~~~~~-----  291 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVP-------FLASLSEDCSLAVLDSSLSE-----  291 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSC-------CEEEEETTSCEEEECTTCCE-----
T ss_pred             CCcceEEeccCCcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCe-------EEEEEeCCCeEEEEECCCCc-----
Confidence            46789999999999999999887  56788999999999999999843       79999999999999998762     


Q ss_pred             CcccccccCCCCCCCccccCCCCCcCCc-eeecc
Q 047728          441 TTQQHPLEGHGVAPNSLPYAPSFSSQGR-ICQKR  473 (474)
Q Consensus       441 ~~~~~~~~~~~~~v~~l~~~p~~s~Dg~-~l~~~  473 (474)
                         ...+.+|...|+++    +|+|||+ +++++
T Consensus       292 ---~~~~~~H~~~V~~v----~~sp~~~~llas~  318 (344)
T 4gqb_B          292 ---LFRSQAHRDFVRDA----TWSPLNHSLLTTV  318 (344)
T ss_dssp             ---EEEECCCSSCEEEE----EECSSSTTEEEEE
T ss_pred             ---EEEEcCCCCCEEEE----EEeCCCCeEEEEE
Confidence               23467899999999    5566665 44443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.5e-37  Score=289.68  Aligned_cols=308  Identities=16%  Similarity=0.176  Sum_probs=247.1

Q ss_pred             ecCcEEEEEE--cCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcce
Q 047728          109 EEGHIYSLAA--AGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       109 h~~~i~~~~~--~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~  182 (474)
                      |.+.|.++++  +|++++++..++.+.+|....  .......|...|.+++|+  +++|++++ ||.|++|++.++....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            3455666555  589999998888877776443  233345799999999998  56888888 9999999998765332


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc--eeeeeee
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK--CLESVIA  260 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~  260 (474)
                      .....                           ...+|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..
T Consensus        87 ~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  139 (337)
T 1gxr_A           87 PVSQL---------------------------DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             CSEEE---------------------------ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             eeecc---------------------------cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence            11100                           011488999999999999999999999999999999877  5667788


Q ss_pred             cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      |...|.+++|+|++ .+++++.||.|++||++...      ....+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus       140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  213 (337)
T 1gxr_A          140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc------eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence            99999999999998 89999999999999997543      345566788999999999999999999999999999999


Q ss_pred             cccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728          340 LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS  419 (474)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s  419 (474)
                      +...............+++++++++|++++.|+.|++||+.+.+   ...+..|...|.+++|+|+++        +|++
T Consensus       214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--------~l~~  282 (337)
T 1gxr_A          214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGK--------WFVS  282 (337)
T ss_dssp             TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSS--------EEEE
T ss_pred             CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCC--------EEEE
Confidence            87665444333334446667789999999999999999999887   346788999999999999999        9999


Q ss_pred             ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          420 GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       420 ~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      ++.||.|++|++.++...        ....|...+.++    +|+|||++++++
T Consensus       283 ~~~dg~i~~~~~~~~~~~--------~~~~~~~~v~~~----~~s~~~~~l~~~  324 (337)
T 1gxr_A          283 TGKDNLLNAWRTPYGASI--------FQSKESSSVLSC----DISVDDKYIVTG  324 (337)
T ss_dssp             EETTSEEEEEETTTCCEE--------EEEECSSCEEEE----EECTTSCEEEEE
T ss_pred             ecCCCcEEEEECCCCeEE--------EEecCCCcEEEE----EECCCCCEEEEe
Confidence            999999999999887422        223467778887    667788887764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.9e-38  Score=304.94  Aligned_cols=290  Identities=15%  Similarity=0.147  Sum_probs=223.5

Q ss_pred             eeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec---CCEEEEEeCCCeE
Q 047728          101 VLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKI  170 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i  170 (474)
                      .+.....+|...|+|++|+   +++||+|+.||+|+|||...    ....+.+|.+.|++|+|+   +++|++|+.||+|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            4455677899999999996   56999999999999999542    234567899999999997   5699999999999


Q ss_pred             EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728          171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~  250 (474)
                      ++||+++.........                              ..+...+.+++|+|++.+|++|+.||.|++||++
T Consensus       190 ~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~  239 (435)
T 4e54_B          190 RLQDFKGNILRVFASS------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD  239 (435)
T ss_dssp             EEEETTSCEEEEEECC------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred             EEeeccCCceeEEecc------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence            9999976533211100                              1145568899999999999999999999999986


Q ss_pred             CcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          251 DYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                       ++.+..+.+|...|.+++|+|++  ++++++.|+.|++||++......   .......|...|++++|+|++++|++++
T Consensus       240 -~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          240 -GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             -SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS---CCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             -cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc---eEEEeeeccccccceeECCCCCeeEEEc
Confidence             46677888999999999999987  78899999999999998654321   1233457889999999999999999999


Q ss_pred             CCCcEEEeecCcccccceeeeecce--------eeEEEEecCCEEEEEe------------CCCcEEEEECCCCceEEEE
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKL--------AILCLVTAGNLVFSGS------------ADMSICIWRRKENEHICLS  388 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~--------~v~~~~~~~~~l~sgs------------~dg~i~iwd~~~~~~~~~~  388 (474)
                      .|+.|++||+++....... ..|..        ...++.+++.+++++.            .++.|++||..+++.. ..
T Consensus       316 ~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~-~~  393 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGL-IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM-CQ  393 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEE-CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE-EE
T ss_pred             CCCEEEEEECCCCccceEE-ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE-EE
Confidence            9999999999876544322 12211        1133445555555543            3468999999988743 22


Q ss_pred             eecCCccceEEE-EEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          389 MLTGHSGPVKCL-AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       389 ~~~~h~~~v~~l-~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ...+|...|.++ +|+|++.        +|++|+ |+.|+||++++++
T Consensus       394 l~~~~~~~v~s~~~fspdg~--------~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          394 LYDPESSGISSLNEFNPMGD--------TLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             ECCSSCCCCCCEEEECTTSS--------CEEEEC-SSEEEECCCC---
T ss_pred             EeCCCCCcEEEEEEECCCCC--------EEEEEc-CCcEEEEECCcCe
Confidence            345788889887 6999998        888876 8899999998874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-37  Score=295.67  Aligned_cols=292  Identities=24%  Similarity=0.347  Sum_probs=228.2

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      .|...|.+++|+  +++|++|+ ++.+++|++.+++............        ..+.      .........+...|
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~--------~~~~------~~~~~~~~~~~~~v  126 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN--------KDPE------NLNTSSSPSSDLYI  126 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------CCCCBE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc--------cccc------cccccccCCCceeE
Confidence            599999999998  66888876 6889999999876543221110000        0000      00000111244569


Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      .+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .|++++.|+.|++||++....       
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-------  199 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-------  199 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-------
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-------
Confidence            999999999999999999999999999999999999999999999999999 999999999999999975432       


Q ss_pred             eeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccccccee------eeecceeeEE--EEecCCEEEEEeCCCc
Q 047728          303 QTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGV------LRGHKLAILC--LVTAGNLVFSGSADMS  373 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~~~~~~~v~~--~~~~~~~l~sgs~dg~  373 (474)
                      .....+...+.+++|+| ++++|++++.|+.|++||++++......      ..+|...+.+  +++++++|++|+.|+.
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            12233567899999999 8999999999999999999877554332      1456666655  5568999999999999


Q ss_pred             EEEEECCCCc----------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcc
Q 047728          374 ICIWRRKENE----------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQ  443 (474)
Q Consensus       374 i~iwd~~~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~  443 (474)
                      |++||++...          ..+...+.+|...|.+++|+|++.        +|++|+.|+.|++||+.++       ..
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------~l~sgs~D~~v~iwd~~~~-------~~  344 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--------YILSGSKDRGVLFWDKKSG-------NP  344 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGC--------EEEEEETTSEEEEEETTTC-------CE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC--------EEEEEeCCCeEEEEECCCC-------eE
Confidence            9999997542          123557789999999999999998        9999999999999999887       45


Q ss_pred             cccccCCCCCCCccccCC--CCCcCCceeeccC
Q 047728          444 QHPLEGHGVAPNSLPYAP--SFSSQGRICQKRS  474 (474)
Q Consensus       444 ~~~~~~~~~~v~~l~~~p--~~s~Dg~~l~~~s  474 (474)
                      ...+.+|...|.+++|++  .|+||+.+++++|
T Consensus       345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs  377 (393)
T 1erj_A          345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  377 (393)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             EEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence            567889999999999988  5889999998864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.9e-37  Score=292.16  Aligned_cols=287  Identities=16%  Similarity=0.199  Sum_probs=229.3

Q ss_pred             eeeeeecCcEEEEEEc------CCEEEEeeCCCcEEEEeCC--cccccccc-----CccCEEEEEecC------CEEEEE
Q 047728          104 GSLVREEGHIYSLAAA------GDLLYTGSDSKNIRVWKNQ--REFSGFKS-----NSGLVKAIVISN------EKIFSG  164 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~------~~~l~tgs~dg~v~vwd~~--~~~~~~~~-----h~~~V~~i~~~~------~~l~s~  164 (474)
                      ....+|.+.|++++++      ..++++++.++.|++||..  +.+..+..     |...|.+++|+.      .+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            3455899999999998      3456666667799999955  33333432     668899999983      389999


Q ss_pred             eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCc
Q 047728          165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKT  243 (474)
Q Consensus       165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~  243 (474)
                      +.||.|++||+.+++...                                .+.+|...|.+++|+| ++.+|++++.|+.
T Consensus        92 ~~dg~i~v~d~~~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~  139 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIK--------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHA  139 (366)
T ss_dssp             ETTCEEEEECTTTCCEEE--------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             cCCCEEEEEEchhceEee--------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999998875432                                2345999999999999 9999999999999


Q ss_pred             EEEEEcCCcceeeee---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee---------------------
Q 047728          244 FKVWRTSDYKCLESV---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK---------------------  298 (474)
Q Consensus       244 i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~---------------------  298 (474)
                      |++||+++++.+..+   ..|...|.+++|+|++ .|++++.||.|++||++.......                     
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999998888   6899999999999998 999999999999999875321100                     


Q ss_pred             -eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-------------cceeeeecceee--EEEEec-
Q 047728          299 -HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-------------HGGVLRGHKLAI--LCLVTA-  361 (474)
Q Consensus       299 -~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------------~~~~~~~~~~~v--~~~~~~-  361 (474)
                       .........|...|.+++|+  +++|++++.|+.|++||+++...             ....+..|...+  ++++++ 
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  297 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF  297 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred             ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence             00112223488999999999  77999999999999999877643             123334455444  566778 


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCceE--EEEeecCC--ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          362 -GNLVFSGSADMSICIWRRKENEHI--CLSMLTGH--SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       362 -~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                       +++|++|+.||.|++||+.+++..  ....+.+|  ...|++++|+|+++        +|++++.||.|++||+.
T Consensus       298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS--------ILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS--------EEEEEETTSEEEEEEC-
T ss_pred             CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC--------eEEEEeCCCEEEEEEec
Confidence             999999999999999999887521  34567777  79999999999999        99999999999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.4e-36  Score=293.95  Aligned_cols=285  Identities=21%  Similarity=0.428  Sum_probs=247.6

Q ss_pred             CCCcceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEE
Q 047728           96 GFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVW  173 (474)
Q Consensus        96 ~~~~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vw  173 (474)
                      +......+..+.+|.+.|+++++++++|++|+.||+|++||..  +.+..+.+|...|.++.++++.|++|+.||.|++|
T Consensus       145 d~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~w  224 (445)
T 2ovr_B          145 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW  224 (445)
T ss_dssp             ETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEE
Confidence            4445677888999999999999999999999999999999954  56777889999999999999999999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      |+.+++...                                .+.+|...|.+++|  ++++|++|+.|+.|++||+++++
T Consensus       225 d~~~~~~~~--------------------------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~  270 (445)
T 2ovr_B          225 DIETGQCLH--------------------------------VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET  270 (445)
T ss_dssp             ESSSCCEEE--------------------------------EEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE
T ss_pred             ECCCCcEEE--------------------------------EEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc
Confidence            998875432                                23458999999999  67899999999999999999999


Q ss_pred             eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      ++..+..|...|.++.+  ++ .+++++.|+.|++||++...      ....+..|...+.++.++  ++++++++.||.
T Consensus       271 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~  340 (445)
T 2ovr_B          271 CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELK--DNILVSGNADST  340 (445)
T ss_dssp             EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred             EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCe
Confidence            99999999999999999  44 99999999999999998654      345667788889888874  679999999999


Q ss_pred             EEEeecCcccccceeee--ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee-----cCCccceEEEEEeeC
Q 047728          333 VNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML-----TGHSGPVKCLAVEKD  405 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~~~~  405 (474)
                      |++||++++........  .|...+.++.+++++|++|+.||.|++||+.+++.  +..+     ..|.+.|++++|+|+
T Consensus       341 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCC
Confidence            99999988765533322  37888999999999999999999999999998874  3444     478899999999999


Q ss_pred             CccccccceEEEEEecCCCc----EEEEEccCC
Q 047728          406 DESLSREKRWILYSGSLDKS----VKMWRVSEQ  434 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~Dg~----i~vw~~~~~  434 (474)
                      +.        +|++|+.||+    |.|||+...
T Consensus       419 ~~--------~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          419 KL--------VCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EE--------EEEEECSSSSSCCEEEEEECCCC
T ss_pred             EE--------EEEEcccCCCCccEEEEEECCCC
Confidence            98        9999999998    999999764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-37  Score=322.13  Aligned_cols=204  Identities=11%  Similarity=0.038  Sum_probs=163.0

Q ss_pred             eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcccc-ccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCC
Q 047728          104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFS-GFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKD  179 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~-~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~  179 (474)
                      ....+|.+.|++++|+  +++||+|+.||+|+||+...... ....|...|.+++|+ +++|++++.|++|++||+.+++
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc
Confidence            3456899999999987  88999999999999999654322 223478899999998 6689999999999999999876


Q ss_pred             cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee----
Q 047728          180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL----  255 (474)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----  255 (474)
                      .....                                 .|...|++++|+|++++|++|+.||+|++||++++++.    
T Consensus        91 ~~~~~---------------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           91 VLTTV---------------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             EEEEE---------------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             EEEEE---------------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            43211                                 16678999999999999999999999999999988754    


Q ss_pred             -------eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeee------------eeeecccccEEE
Q 047728          256 -------ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFS------------QTLLKQECAVTA  314 (474)
Q Consensus       256 -------~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~v~~  314 (474)
                             ..+.+|...|.+++|+|++  .+++|+.||.| +||++...........            .....|...|.+
T Consensus       138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~  216 (902)
T 2oaj_A          138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ  216 (902)
T ss_dssp             CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred             ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence                   2345688999999999974  89999999999 9999854321100000            001223578999


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728          315 LAISPDAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       315 l~~~~~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                      ++|+|++++|++++.|+.|++||++++
T Consensus       217 v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          217 SLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            999999999999999999999998543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.7e-37  Score=298.04  Aligned_cols=277  Identities=24%  Similarity=0.443  Sum_probs=234.2

Q ss_pred             eeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCccee
Q 047728          106 LVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       106 l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  183 (474)
                      ..+|...|+|+++++++|++|+.||.|++||..  +....+.+|.+.|.++.+++++|++|+.||+|++||+.+++... 
T Consensus       129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~-  207 (435)
T 1p22_A          129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN-  207 (435)
T ss_dssp             CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE-
T ss_pred             ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE-
Confidence            345667799999999999999999999999954  56777889999999999999999999999999999999876432 


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee---eeeee
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL---ESVIA  260 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~  260 (474)
                                                     .+.+|...|.+++|++  ..|++|+.|+.|++||+.+++..   ..+.+
T Consensus       208 -------------------------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  254 (435)
T 1p22_A          208 -------------------------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVG  254 (435)
T ss_dssp             -------------------------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             -------------------------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecC
Confidence                                           2345899999999974  59999999999999999987765   66778


Q ss_pred             cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728          261 HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       261 ~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      |...|.++.+. ...+++|+.||.|++||++...      ....+..|...|.+++++  +.++++|+.||.|++||+++
T Consensus       255 ~~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          255 HRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCE------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             CSSCEEEEEEE-TTEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeC-CCEEEEEeCCCeEEEEECCcCc------EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC
Confidence            99999999993 3399999999999999998654      355667889999999994  68999999999999999998


Q ss_pred             ccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce-------EEEEeecCCccceEEEEEeeCCccccccc
Q 047728          341 NLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH-------ICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      +... ..+.+|...+.++.+++++|++|+.||.|++||+.++..       .++..+.+|.+.|++++|  ++.      
T Consensus       326 ~~~~-~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~------  396 (435)
T 1p22_A          326 GACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF------  396 (435)
T ss_dssp             CCEE-EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS------
T ss_pred             CCEE-EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC------
Confidence            7654 566789999999999999999999999999999865431       146788899999999999  566      


Q ss_pred             eEEEEEecCCCcEEEEEccCCCC
Q 047728          414 RWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                        +|++++.||.|++||+.+...
T Consensus       397 --~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          397 --QIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             --CEEECCSSSEEEEEC------
T ss_pred             --EEEEEeCCCEEEEEECCCCCC
Confidence              799999999999999987643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-36  Score=309.77  Aligned_cols=377  Identities=12%  Similarity=0.106  Sum_probs=261.1

Q ss_pred             CCCCCCCCCCCCcCccCCCCCCCCCCCCCcc----eeeeeeeeecCc-EEEEEE----cCCEEEEeeCCCcEEEEeCC--
Q 047728           70 DSSSPFSKSPWSTHHVSVPTPSNNDDGFSPN----VLIGSLVREEGH-IYSLAA----AGDLLYTGSDSKNIRVWKNQ--  138 (474)
Q Consensus        70 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~h~~~-i~~~~~----~~~~l~tgs~dg~v~vwd~~--  138 (474)
                      ..+..++++|.....................    ..+..+.+|.+. |.++++    ++++|++|+.||.|++||..  
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~   98 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   98 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence            4455666677665443322221222222333    677889999999 999887    45899999999999999974  


Q ss_pred             --------ccccccccCccCEEEEEec--CCEEEEEeCC----CeEEEEecCCCCcceeee--------ecccCccc-ee
Q 047728          139 --------REFSGFKSNSGLVKAIVIS--NEKIFSGHQD----GKIRVWKVSSKDASIHKR--------VGTLPTFK-DF  195 (474)
Q Consensus       139 --------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d----g~i~vwd~~~~~~~~~~~--------~~~~~~~~-~~  195 (474)
                              +....+..|...|.+++|+  +++|++++.+    +.|++||.  ++......        +...+... .+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~~~~~~v~~~~~~~~~~~~l  176 (615)
T 1pgu_A           99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVSGHSQRINACHLKQSRPMRS  176 (615)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceeeecCCccEEEEEECCCCCcEE
Confidence                    4456677899999999998  6689999887    68888883  22221111        00111111 11


Q ss_pred             eeeecCCCCeEEEeeecc----ceeeeccC---CeeEEEecCC-CCEEEEEECCCcEEEEEcCCcceeeee-e---ecCc
Q 047728          196 IKCSMKPSNYIEVRRHRN----GLWIKHFD---AISSLSMSED-QNLLYSASWDKTFKVWRTSDYKCLESV-I---AHDD  263 (474)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~----~~~~~h~~---~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~-~---~~~~  263 (474)
                      +...  ....+.++....    ..+.+|..   .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ .   .|..
T Consensus       177 ~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  254 (615)
T 1pgu_A          177 MTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  254 (615)
T ss_dssp             EEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             EEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence            1111  122333333222    34567888   9999999999 999999999999999999999999998 6   8999


Q ss_pred             ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee---------------------------------------eeeee
Q 047728          264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK---------------------------------------HFFSQ  303 (474)
Q Consensus       264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------------~~~~~  303 (474)
                      .|.+++|+ ++ .+++++.|+.|++||++.......                                       .....
T Consensus       255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  333 (615)
T 1pgu_A          255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK  333 (615)
T ss_dssp             CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred             ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence            99999999 77 999999999999999874321100                                       01112


Q ss_pred             eeecccc---------------------------------cEEEEEEcCCCCEEEEEcCCCcEEEeecC-----------
Q 047728          304 TLLKQEC---------------------------------AVTALAISPDAAIVYCGSSDGLVNFWERE-----------  339 (474)
Q Consensus       304 ~~~~~~~---------------------------------~v~~l~~~~~~~~l~~~~~dg~i~v~d~~-----------  339 (474)
                      .+..|..                                 .|.+++| +++..|++++.|+.|++||+.           
T Consensus       334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  412 (615)
T 1pgu_A          334 TISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVA  412 (615)
T ss_dssp             EECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEE
T ss_pred             EEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEE
Confidence            2223333                                 3444444 224555555555555555543           


Q ss_pred             ---------------------------------------------------------------cccccceeeeecceeeE
Q 047728          340 ---------------------------------------------------------------LNLSHGGVLRGHKLAIL  356 (474)
Q Consensus       340 ---------------------------------------------------------------~~~~~~~~~~~~~~~v~  356 (474)
                                                                                     ........+..|...+.
T Consensus       413 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~  492 (615)
T 1pgu_A          413 SANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS  492 (615)
T ss_dssp             EECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred             EEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceE
Confidence                                                                           22111122334555554


Q ss_pred             --EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEee----------CCccccccceEEEEEecCC
Q 047728          357 --CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEK----------DDESLSREKRWILYSGSLD  423 (474)
Q Consensus       357 --~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~----------~~~~~~~~~~~~l~s~s~D  423 (474)
                        ++++++++|++|+.||.|++||+.+++  .+..+.+ |...|++++|+|          ++.        +|++++.|
T Consensus       493 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~--------~l~~~~~d  562 (615)
T 1pgu_A          493 YISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKGANEEEIEED--------LVATGSLD  562 (615)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCCCSSCEEEEEECCCC------CCSCC--------EEEEEETT
T ss_pred             EEEECCCCCEEEEcCCCCeEEEeeCCCCc--ceeEeecCCCCceeEEEEcCccccccccccCCC--------EEEEEcCC
Confidence              455689999999999999999999887  4567777 999999999999          888        99999999


Q ss_pred             CcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          424 KSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       424 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      |.|++|++.++.      .....+.+|...|+++    +|+|||+ |+++
T Consensus       563 g~i~iw~~~~~~------~~~~~~~~h~~~v~~l----~~s~~~~-l~s~  601 (615)
T 1pgu_A          563 TNIFIYSVKRPM------KIIKALNAHKDGVNNL----LWETPST-LVSS  601 (615)
T ss_dssp             SCEEEEESSCTT------CCEEETTSSTTCEEEE----EEEETTE-EEEE
T ss_pred             CcEEEEECCCCc------eechhhhcCccceEEE----EEcCCCC-eEEe
Confidence            999999998763      3455678899999999    6788898 6654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-36  Score=288.26  Aligned_cols=289  Identities=13%  Similarity=0.135  Sum_probs=232.9

Q ss_pred             eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728          106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus       106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~  177 (474)
                      +..|++.|++++++  +++|++|+.||.|++||...    .+..+.+|...|.+++|+  +++|++++.||.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            44588999999886  78999999999999999542    677788999999999998  77999999999999999987


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce---
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC---  254 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---  254 (474)
                      ++.....                              .+..|...|.+++|+|++++|++++.|+.|++||+..++.   
T Consensus        84 ~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  133 (372)
T 1k8k_C           84 RTWKPTL------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV  133 (372)
T ss_dssp             TEEEEEE------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred             CeeeeeE------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence            6532221                              1234888999999999999999999999999999988763   


Q ss_pred             eee-eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc------------eeeeeeeeeecccccEEEEEEcCC
Q 047728          255 LES-VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG------------TKHFFSQTLLKQECAVTALAISPD  320 (474)
Q Consensus       255 ~~~-~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~~  320 (474)
                      ... ...|...|.+++|+|++ .+++++.||.|++||++.....            ........+..|...|.+++|+|+
T Consensus       134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (372)
T 1k8k_C          134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  213 (372)
T ss_dssp             EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence            223 35678999999999998 8999999999999997522100            011234556688899999999999


Q ss_pred             CCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCC--CceEEE---------
Q 047728          321 AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKE--NEHICL---------  387 (474)
Q Consensus       321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~--~~~~~~---------  387 (474)
                      +++|++++.|+.|++||+++.... ..+..|...+  +++++++.+|++| .|+.|++|++..  ++..++         
T Consensus       214 ~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~  291 (372)
T 1k8k_C          214 GSRVAWVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS  291 (372)
T ss_dssp             SSEEEEEETTTEEEEEEGGGTTEE-EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred             CCEEEEEeCCCEEEEEECCCCcee-EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc
Confidence            999999999999999999887655 4455666555  5566788888877 899999999987  431111         


Q ss_pred             ---------------------------Eee-cCCccceEEEEEee-CC---ccccccceEEEEEecCCCcEEEEEccCC
Q 047728          388 ---------------------------SML-TGHSGPVKCLAVEK-DD---ESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       388 ---------------------------~~~-~~h~~~v~~l~~~~-~~---~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                                                 ..+ .+|..+|++++|.+ ++   .        +|++|+.||.|++|++.+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~--------~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS--------QFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS--------EEEEEETTSEEEEEEHHHH
T ss_pred             hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee--------eEEEecCCCceEEEEecCh
Confidence                                       223 48999999999775 44   6        8999999999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=274.95  Aligned_cols=285  Identities=20%  Similarity=0.306  Sum_probs=239.3

Q ss_pred             CCcceeeeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728           97 FSPNVLIGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR  171 (474)
Q Consensus        97 ~~~~~~~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~  171 (474)
                      +.+.+++..+.+|.+.|.++++. +++|++|+.||.|++||..  +....+..|...|.+++|+  +++|++++.||.|+
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            45568889999999999998864 8899999999999999954  4566778899999999998  67999999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      +|++........                             ...+.+|...|.+++|  ++++|++++.|+.|++||  .
T Consensus        85 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~  131 (313)
T 3odt_A           85 GVPLFATSGEDP-----------------------------LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E  131 (313)
T ss_dssp             EEETTCCTTSCC------------------------------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T
T ss_pred             EEEeeecCCCCc-----------------------------ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C
Confidence            999977542211                             1233459999999999  577999999999999999  6


Q ss_pred             cceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCCCEEEEEc
Q 047728          252 YKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       252 ~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      ++.+..+..|...+.++.+.+ ++ .+++++.||.|++||...        ....... +...+.+++|+|++. +++++
T Consensus       132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~  202 (313)
T 3odt_A          132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCS  202 (313)
T ss_dssp             TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred             CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEcc
Confidence            788888899999999999988 55 999999999999999432        2333444 888999999999998 88999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      .|+.|++||++++... ..+.+|...+.++.+  ++ .|++++.||.|++||+.+++  .+..+..|...|.+++|+|++
T Consensus       203 ~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~  278 (313)
T 3odt_A          203 NDGLIKLVDMHTGDVL-RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS--LKQVITLPAISIWSVDCMSNG  278 (313)
T ss_dssp             TTSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC--EEEEEECSSSCEEEEEECTTS
T ss_pred             CCCeEEEEECCchhhh-hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc--eeEEEeccCceEEEEEEccCC
Confidence            9999999999987654 455678777766654  56 69999999999999999887  567788899999999999999


Q ss_pred             ccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      .         +++++.||.|++|++.++..
T Consensus       279 ~---------~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          279 D---------IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             C---------EEEEETTSCEEEEESCGGGC
T ss_pred             C---------EEEEeCCCcEEEEeCCCCce
Confidence            7         55689999999999988643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=286.08  Aligned_cols=289  Identities=14%  Similarity=0.216  Sum_probs=231.5

Q ss_pred             cceeeeeeeeecCcEEEEEEc--C-CEEEEeeC---CCcEEEEeCCcc--c-cccccCccCEEEEEecC-----CEEEEE
Q 047728           99 PNVLIGSLVREEGHIYSLAAA--G-DLLYTGSD---SKNIRVWKNQRE--F-SGFKSNSGLVKAIVISN-----EKIFSG  164 (474)
Q Consensus        99 ~~~~~~~l~~h~~~i~~~~~~--~-~~l~tgs~---dg~v~vwd~~~~--~-~~~~~h~~~V~~i~~~~-----~~l~s~  164 (474)
                      |......+.+|.+.|.+++++  + .++++|+.   ||.|+|||....  . .....|...|.+++|++     ++|+++
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            445555678899999999987  4 36667776   999999996532  2 22337899999999982     789999


Q ss_pred             eCCCeEEEEecCCCC-cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE------ecCCCCEEEE
Q 047728          165 HQDGKIRVWKVSSKD-ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS------MSEDQNLLYS  237 (474)
Q Consensus       165 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~------~~~~~~~l~s  237 (474)
                      +.||.|++||+.+++ ..                                ..+.+|...|.+++      |+|++++|++
T Consensus        87 ~~dg~i~iwd~~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~  134 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPV--------------------------------YSVKGHKEIINAIDGIGGLGIGEGAPEIVT  134 (357)
T ss_dssp             ETTSCEEEECTTSCSSCS--------------------------------EEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred             cCCCeEEEEeCCCCCccE--------------------------------EEEEecccceEEEeeccccccCCCccEEEE
Confidence            999999999999876 22                                12345999999995      5678999999


Q ss_pred             EECCCcEEEEEcCCcc-eeeeeeecCc----ceeEEE----ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec
Q 047728          238 ASWDKTFKVWRTSDYK-CLESVIAHDD----AVNSIV----AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK  307 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~v~----~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  307 (474)
                      ++.|+.|++||+++++ .+..+..|..    .+.+++    |++++ .+++++.||.|++||++...       ......
T Consensus       135 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~  207 (357)
T 3i2n_A          135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------LRWETN  207 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-------EEEEEE
T ss_pred             EeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-------eeeecC
Confidence            9999999999999887 6777766554    788888    67788 89999999999999998543       233466


Q ss_pred             ccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccceee----eecceeeEEE--EecCC-EEEEEeCCCcEEEE
Q 047728          308 QECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHGGVL----RGHKLAILCL--VTAGN-LVFSGSADMSICIW  377 (474)
Q Consensus       308 ~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~~v~~~--~~~~~-~l~sgs~dg~i~iw  377 (474)
                      +...|.+++|+|   ++.+|++++.||.|++||+++........    .+|...+.++  ++++. +|++|+.||.|++|
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            788999999999   99999999999999999998775543332    3677777554  55666 89999999999999


Q ss_pred             ECCCCce-----------------EEEEeecCCccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccCC
Q 047728          378 RRKENEH-----------------ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       378 d~~~~~~-----------------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~~  434 (474)
                      |++....                 ..+..+.+|..+|++++|+|+++        +|+ +++.||.|++|++.+.
T Consensus       288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR--------GLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST--------TEEEEEETTSEEEEEEECC-
T ss_pred             ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC--------eEEEEecCCCcEEEEECCCc
Confidence            9975432                 35678889999999999999998        676 8999999999999865

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.3e-36  Score=285.08  Aligned_cols=285  Identities=14%  Similarity=0.119  Sum_probs=216.9

Q ss_pred             CcEEEEEEc--CCEEEEeeCCC-------cEEEEeCCcc------------ccccccCccCEEEEEecCCEEEEEe----
Q 047728          111 GHIYSLAAA--GDLLYTGSDSK-------NIRVWKNQRE------------FSGFKSNSGLVKAIVISNEKIFSGH----  165 (474)
Q Consensus       111 ~~i~~~~~~--~~~l~tgs~dg-------~v~vwd~~~~------------~~~~~~h~~~V~~i~~~~~~l~s~~----  165 (474)
                      -+|+|++|.  +++|++|+.+.       .|++|+....            ...+..|...|.+++++++.+++|.    
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~   94 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS   94 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence            379998875  88999987543       5999985421            1235678889999999998888775    


Q ss_pred             -------CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728          166 -------QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA  238 (474)
Q Consensus       166 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  238 (474)
                             .|+.+|+|++............                       ........+...+.+++|+|||++++++
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~fSpDg~~la~a  151 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------------VDFDASTNADDYTKLVYISREGTVAAIA  151 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------------ECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred             cEEEEecCCCcEEEEEecCCCceEEEeee-----------------------eceeecCCcccCEEEEEEcCCCCEEEEE
Confidence                   4677888888765433211100                       0001122356678999999999998765


Q ss_pred             E--CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          239 S--WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       239 s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      +  .|++|+|||+++++++..+. |...|.+++|+|++ ++++++ ++.+++|+...+..    ........|...|.++
T Consensus       152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~v  225 (365)
T 4h5i_A          152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC----IARKTDFDKNWSLSKI  225 (365)
T ss_dssp             ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE----EEEECCCCTTEEEEEE
T ss_pred             ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc----eeeeecCCCCCCEEEE
Confidence            5  78999999999999988885 77889999999999 666666 55667776654332    1233455688899999


Q ss_pred             EEcCCCCEEEEEcCCC----cEEEeecCccccc---ceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728          316 AISPDAAIVYCGSSDG----LVNFWERELNLSH---GGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHIC  386 (474)
Q Consensus       316 ~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~---~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~  386 (474)
                      +|+|+++++++++.|+    .+++|++......   ...+.+|...|  ++++|+|++|++|+.|++|+|||+++++  +
T Consensus       226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--~  303 (365)
T 4h5i_A          226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS--M  303 (365)
T ss_dssp             EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--E
T ss_pred             EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc--E
Confidence            9999999999998887    5788887655322   23345666666  4567799999999999999999999987  4


Q ss_pred             EEe-ecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          387 LSM-LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       387 ~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.. +.+|..+|++|+|+||++        +|+|||.|++|+||++...
T Consensus       304 ~~~~~~gH~~~V~~v~fSpdg~--------~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          304 SKIFKQAHSFAITEVTISPDST--------YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSSSSCEEEEEECTTSC--------EEEEEETTSEEEEEECCTT
T ss_pred             EEEecCcccCCEEEEEECCCCC--------EEEEEeCCCeEEEEEcCCC
Confidence            444 578999999999999999        9999999999999999754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-35  Score=287.26  Aligned_cols=284  Identities=19%  Similarity=0.251  Sum_probs=233.3

Q ss_pred             eeeeecCc--EEEEEEcCCEEEEeeCCCcEEEEeCC--cccccccc-CccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728          105 SLVREEGH--IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKS-NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus       105 ~l~~h~~~--i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~-h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~  177 (474)
                      ...+|...  +.+++++++.+++++.||.|++||..  +....+.. |...|.+++|+  +++|++|+.||.|++||+.+
T Consensus        86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence            33455544  66788988888999999999999954  33334443 88999999998  67999999999999999988


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceee
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLE  256 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~  256 (474)
                      ++...                                .+.+|...|.+++|  ++++|++++.|+.|++||++ ....+.
T Consensus       166 ~~~~~--------------------------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~  211 (401)
T 4aez_A          166 QTKLR--------------------------------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG  211 (401)
T ss_dssp             CCEEE--------------------------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CeEEE--------------------------------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee
Confidence            75432                                23359999999999  45799999999999999998 567788


Q ss_pred             eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEc--CCCc
Q 047728          257 SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGS--SDGL  332 (474)
Q Consensus       257 ~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~--~dg~  332 (474)
                      .+..|...|.+++|+|++ .|++++.|+.|++||++...      ....+..|...|.+++|+|++ .++++++  .|+.
T Consensus       212 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence            889999999999999998 99999999999999998643      345566789999999999966 5666654  7999


Q ss_pred             EEEeecCcccccceeeeecceeeEEEEecCCEEEE--EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728          333 VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFS--GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  410 (474)
                      |++||++++..............++++++++++++  |+.||.|++||+.+++......+.+|...|.+++|+|++.   
T Consensus       286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~---  362 (401)
T 4aez_A          286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR---  362 (401)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSS---
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCC---
Confidence            99999998876654443344455667778999999  4489999999999887666677889999999999999999   


Q ss_pred             ccceEEEEEecCCCcEEEEEccCCCC
Q 047728          411 REKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                           +|++++.||.|++|++.+++.
T Consensus       363 -----~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          363 -----ILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             -----EEEEECTTSEEEEEECCC---
T ss_pred             -----EEEEEeCCCcEEEEECCCCcc
Confidence                 999999999999999988753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=296.15  Aligned_cols=292  Identities=17%  Similarity=0.276  Sum_probs=224.9

Q ss_pred             ceeeeee-eeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc---c--c-cccc-cCccCEEEEEec--CCEEEEEeC
Q 047728          100 NVLIGSL-VREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR---E--F-SGFK-SNSGLVKAIVIS--NEKIFSGHQ  166 (474)
Q Consensus       100 ~~~~~~l-~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~---~--~-~~~~-~h~~~V~~i~~~--~~~l~s~~~  166 (474)
                      ..++.++ .+|.+.|++++++   +++|++|+.||+|+|||...   .  . ..+. .|...|.+++|+  +++|++++.
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            4677788 8899999998875   57999999999999998543   1  1 1222 599999999998  579999999


Q ss_pred             CCeEEEEecC---CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee--ccCCeeEEE--ecCCCCEEEEEE
Q 047728          167 DGKIRVWKVS---SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK--HFDAISSLS--MSEDQNLLYSAS  239 (474)
Q Consensus       167 dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~--~~~~~~~l~s~s  239 (474)
                      ||.|++||++   .++..........                      ....+..  +...+.++.  +++++.+|++++
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~~~~i----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLNCECI----------------------RKINLKNFGKNEYAVRMRAFVNEEKSLLVALT  189 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEEEEEE----------------------EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCEEEEEEeccccCCceeecccccee----------------------EEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence            9999999995   3333221111000                      0001111  566788887  568899999999


Q ss_pred             CCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-ecccccEEEE
Q 047728          240 WDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LKQECAVTAL  315 (474)
Q Consensus       240 ~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l  315 (474)
                      .|+.|++||+++++++..+..  |...|.+++|+|++ .|++|+.||.|++||++...      ....+ ..+...|.++
T Consensus       190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV------LIRSWSFGDHAPITHV  263 (437)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE------EEEEEBCTTCEEEEEE
T ss_pred             CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc------EEEEEecCCCCceEEE
Confidence            999999999999999999988  89999999999999 89999999999999998533      23333 2677899999


Q ss_pred             EEcC----CCCEEEEEcCCCcEEEeecCcccccceee-----------------------ee--cceee--EEEEecCCE
Q 047728          316 AISP----DAAIVYCGSSDGLVNFWERELNLSHGGVL-----------------------RG--HKLAI--LCLVTAGNL  364 (474)
Q Consensus       316 ~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----------------------~~--~~~~v--~~~~~~~~~  364 (474)
                      +|+|    ++.+|++++.|+.|++||++++.......                       .+  |...+  ++++ ++++
T Consensus       264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~  342 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI  342 (437)
T ss_dssp             EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred             EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence            6665    67799999999999999998775433222                       11  44444  4455 6789


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeec-------------------------------------CCccceEEEEEeeC--
Q 047728          365 VFSGSADMSICIWRRKENEHICLSMLT-------------------------------------GHSGPVKCLAVEKD--  405 (474)
Q Consensus       365 l~sgs~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~h~~~v~~l~~~~~--  405 (474)
                      |++|+.|+.|++||+.+++..  ..+.                                     .|...|++++|.++  
T Consensus       343 l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          343 LLTDEATSSIVMFSLNELSSS--KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEGGGTEEEEEETTCGGGC--EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             EEecCCCCeEEEEECCCcccc--eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            999999999999999887632  2222                                     28999999999998  


Q ss_pred             CccccccceEEEEEecCCCcEEEEE
Q 047728          406 DESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      +.        +|++|+.||.|+||+
T Consensus       421 ~~--------~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TP--------LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SE--------EEEEEETTSCEEEEC
T ss_pred             ce--------EEEEEcCCceEEEeC
Confidence            55        899999999999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=298.56  Aligned_cols=291  Identities=14%  Similarity=0.156  Sum_probs=237.1

Q ss_pred             eeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec---CCEEEEEeCCCeEEEEec
Q 047728          107 VREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKV  175 (474)
Q Consensus       107 ~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~  175 (474)
                      ..|.+.|.+++++  +++|++|+.||.|++||...      ....+..|...|.+++|+   +++|++++.||.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            3588899999986  78999999999999999654      667788999999999998   568999999999999999


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCcce
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      .+.+........                       .....+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.
T Consensus       144 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          144 NKCTESPSNYTP-----------------------LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             TTTSSCTTTCCC-----------------------BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             CCCccccccccc-----------------------cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            887521000000                       000122458999999999998 78999999999999999999999


Q ss_pred             eeeeeec------CcceeEEEecCCC--eEEEeeCCC---cEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcC-CC
Q 047728          255 LESVIAH------DDAVNSIVAGFDG--LVFTGSADG---TVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISP-DA  321 (474)
Q Consensus       255 ~~~~~~~------~~~v~~v~~~~~~--~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~-~~  321 (474)
                      +..+..+      ...|.+++|+|++  .+++++.|+   .|++||++....     ....+. .|...|.+++|+| ++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~  275 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDE  275 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCS
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCC
Confidence            9888776      7899999999997  899999998   999999986533     234455 7889999999999 99


Q ss_pred             CEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecC-CEEEEEeCCCcEEEEECCCCceEEE-----------
Q 047728          322 AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAG-NLVFSGSADMSICIWRRKENEHICL-----------  387 (474)
Q Consensus       322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~-----------  387 (474)
                      ++|++++.|+.|++||+++.... ..+..|...+  +++++++ .+|++++.|+.|++||+........           
T Consensus       276 ~~l~s~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  354 (416)
T 2pm9_A          276 HLLLSSGRDNTVLLWNPESAEQL-SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES  354 (416)
T ss_dssp             SCEEEEESSSEEEEECSSSCCEE-EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred             CeEEEEeCCCCEEEeeCCCCccc-eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence            99999999999999999987654 4556676666  5666777 8999999999999999976542110           


Q ss_pred             ----E------------------eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          388 ----S------------------MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       388 ----~------------------~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                          .                  ....|..++.+++|+|+++        +|++++.|+.|+||++.+.
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK--------LVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE--------EECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccccccccccccccccCCccccCCccceEEeeCCe--------EEEEeCCCCeEEEEEeccC
Confidence                0                  0111677888999999999        9999999999999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-37  Score=292.53  Aligned_cols=290  Identities=14%  Similarity=0.114  Sum_probs=218.2

Q ss_pred             eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728          106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS  177 (474)
Q Consensus       106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~  177 (474)
                      +..|.+.|++++++  +++|++|+.||.|+|||..    +....+.+|...|.+++|+  +++|++++.|++|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            34467789888876  8899999999999999854    5677888999999999998  67999999999999999988


Q ss_pred             CC-cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---
Q 047728          178 KD-ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---  253 (474)
Q Consensus       178 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---  253 (474)
                      ++ ....                              ..+.+|...|.+++|+|++++|++++.|+.|++||+++++   
T Consensus        87 ~~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  136 (377)
T 3dwl_C           87 DGTWKQT------------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW  136 (377)
T ss_dssp             --CCCCE------------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC
T ss_pred             CCceeee------------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce
Confidence            75 1111                              1234599999999999999999999999999999999877   


Q ss_pred             eeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc------------eeeeeeeeeecccccEEEEEEcC
Q 047728          254 CLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG------------TKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       254 ~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      ....+.. |...|.+++|+|++ +|++++.|+.|++||++.....            ........+ .|...|.+++|+|
T Consensus       137 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp  215 (377)
T 3dwl_C          137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP  215 (377)
T ss_dssp             CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT
T ss_pred             eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC
Confidence            4677777 99999999999998 9999999999999998633211            112233444 8899999999999


Q ss_pred             CCCEEEEEcCCCcEEEeecCccccc---ceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceE---------
Q 047728          320 DAAIVYCGSSDGLVNFWERELNLSH---GGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHI---------  385 (474)
Q Consensus       320 ~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~---------  385 (474)
                      ++++|++++.|+.|++||++++...   ...+.+|...+  +++++++++|++|+.|+.+ +|+.......         
T Consensus       216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  294 (377)
T 3dwl_C          216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGT  294 (377)
T ss_dssp             TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccc
Confidence            9999999999999999999987652   34566777666  5566789999998866665 6665421100         


Q ss_pred             -------------------EE------E----------------eecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728          386 -------------------CL------S----------------MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK  424 (474)
Q Consensus       386 -------------------~~------~----------------~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg  424 (474)
                                         ..      .                ....|...|+++++.+....    ....|+||+.||
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~----~~~~~~s~g~Dg  370 (377)
T 3dwl_C          295 SKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG----NITAFTSSGTDG  370 (377)
T ss_dssp             CCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT----EEEEEEEEETTS
T ss_pred             cccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC----ceEEEEeecCCC
Confidence                               00      0                11239999999998776531    112599999999


Q ss_pred             cEEEEEc
Q 047728          425 SVKMWRV  431 (474)
Q Consensus       425 ~i~vw~~  431 (474)
                      .|+|||+
T Consensus       371 ~i~iWdl  377 (377)
T 3dwl_C          371 RVVLWTL  377 (377)
T ss_dssp             EEEEECC
T ss_pred             cEEEecC
Confidence            9999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=283.76  Aligned_cols=295  Identities=17%  Similarity=0.187  Sum_probs=234.2

Q ss_pred             ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcc--cccc-------------ccCccCEEEEEec---C
Q 047728          100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQRE--FSGF-------------KSNSGLVKAIVIS---N  158 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~--~~~~-------------~~h~~~V~~i~~~---~  158 (474)
                      ......+.+|.+.|++++++   +++|++|+.||.|++||....  ...+             .+|...|.+++|+   +
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            34556677899999999985   689999999999999996532  2222             3599999999997   3


Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC---CCCEE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE---DQNLL  235 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~l  235 (474)
                      .+|++++.||.|++||+.+++.....                                 .+...+.++.+.+   ++.++
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~  159 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVF---------------------------------NFEETVYSHHMSPVSTKHCLV  159 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEE---------------------------------ECSSCEEEEEECSSCSSCCEE
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceec---------------------------------cCCCceeeeEeecCCCCCcEE
Confidence            58999999999999999987543221                                 2677889999988   44599


Q ss_pred             EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceee----------eeee
Q 047728          236 YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKH----------FFSQ  303 (474)
Q Consensus       236 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~  303 (474)
                      ++++.|+.|++||+++++.+..+..|...|.+++|+|++  .+++++.||.|++||++........          ....
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  239 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES  239 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence            999999999999999999999999999999999999998  5889999999999999865421110          0112


Q ss_pred             eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----cceeeEEE-EecCCEEEEEeCCCcEEEE
Q 047728          304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-----HKLAILCL-VTAGNLVFSGSADMSICIW  377 (474)
Q Consensus       304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~~v~~~-~~~~~~l~sgs~dg~i~iw  377 (474)
                      ....|...|.+++|+|++++|++++.|+.|++||++++.........     .......+ ...+..+++++.|+.|++|
T Consensus       240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  319 (408)
T 4a11_B          240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY  319 (408)
T ss_dssp             SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred             ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence            22578889999999999999999999999999999887554322111     11111222 2245677777889999999


Q ss_pred             ECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          378 RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       378 d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                      |+.+++  .+..+.+|...|++++|+|++.        +|++++.||.|++|++.+.++.
T Consensus       320 d~~~~~--~~~~~~~~~~~v~~~~~s~~~~--------~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          320 TVYSGE--QITMLKGHYKTVDCCVFQSNFQ--------ELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             ETTTCC--EEEEECCCSSCEEEEEEETTTT--------EEEEEETTSCEEEEEECC----
T ss_pred             ECcCCc--ceeeeccCCCeEEEEEEcCCCC--------EEEEECCCCeEEEEeCCCCCcc
Confidence            999888  5678899999999999999998        9999999999999999987544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.7e-36  Score=327.86  Aligned_cols=288  Identities=17%  Similarity=0.275  Sum_probs=244.0

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~  176 (474)
                      ...+.+|.+.|++++++  +++|++|+.||+|++||..  +.+..+.+|...|.+++|+  +++|++++.||+|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            34678999999998886  8899999999999999954  5677888999999999998  6799999999999999999


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcce
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      +++...                                .+.+|...|.+++|+|  ++.++++|+.|+.|++||+.++++
T Consensus       688 ~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          688 TGKLVH--------------------------------TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             TCCEEE--------------------------------EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             CCceEE--------------------------------EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            876532                                2345999999999999  566899999999999999999999


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee-------eeecccccEEEEEEcCCCCEEEE
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ-------TLLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      +..+.+|...|.+++|+|++ .+++++.||.|++||++............       ........+.+++|+|++..+++
T Consensus       736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  815 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV  815 (1249)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred             hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence            99999999999999999999 99999999999999998653211111100       11123447889999999999998


Q ss_pred             EcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          327 GSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      ++ ++.+.+||+.++........+|...+  +++++++.++++++.||.|++||+.++.  .+..+.+|...|++++|+|
T Consensus       816 ~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp  892 (1249)
T 3sfz_A          816 AA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--KVADCRGHLSWVHGVMFSP  892 (1249)
T ss_dssp             EE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE--EEEEECCCSSCEEEEEECT
T ss_pred             Ec-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc--eeeecCCCccceEEEEECC
Confidence            87 68999999998877766666776665  5566789999999999999999999887  5678889999999999999


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEccC
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ++.        +|++++.||.|++|++..
T Consensus       893 dg~--------~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          893 DGS--------SFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             TSS--------EEEEEETTSCEEEEEHHH
T ss_pred             CCC--------EEEEEeCCCeEEEEEccc
Confidence            998        899999999999999753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.6e-35  Score=309.28  Aligned_cols=287  Identities=18%  Similarity=0.254  Sum_probs=241.9

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      .+.+.+.+|.+.|.+++++  +++|++|+.||.|+|||..  +.+..+..|...|.+++|+  +++|++++.||.|++|+
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            3567889999999999987  8899999999999999954  5677888999999999998  67999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-c
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-K  253 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~  253 (474)
                      +.+++...                                .+.+|...|++++|+|++++|++++.|+.|++||+.++ .
T Consensus        84 ~~~~~~~~--------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           84 YNTGEKVV--------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (814)
T ss_dssp             TTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred             CCCCcEEE--------------------------------EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence            98876432                                23459999999999999999999999999999999886 6


Q ss_pred             eeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcC
Q 047728          254 CLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSS  329 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~  329 (474)
                      ....+..|...|.+++|+| ++ .+++++.||.|++||++....     .......+...+.+++|+|  ++.+|++++.
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            7778889999999999999 66 899999999999999975543     1222234458899999999  9999999999


Q ss_pred             CCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          330 DGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       330 dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      ||.|++||++++... ..+.+|...+  +++++++++|++++.||.|++||+.+++  .+..+..|...|.+++|+|++.
T Consensus       207 dg~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGR  283 (814)
T ss_dssp             TSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS--EEEEECCSSSSEEEEEECTTCG
T ss_pred             CCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEeecCCCcEEEEEEccCCC
Confidence            999999999887654 4556676666  4566789999999999999999999887  5678888999999999999986


Q ss_pred             cccccceEEEEEecCCCcEEEEEccCC
Q 047728          408 SLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .       ++++++.|+.+.+|++...
T Consensus       284 ~-------~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          284 K-------NYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             G-------GEEEEEETTEEEEEECSCC
T ss_pred             c-------eEEEEEeCCCEEEEEcCCC
Confidence            4       3344555677889987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.8e-36  Score=328.71  Aligned_cols=346  Identities=20%  Similarity=0.250  Sum_probs=270.6

Q ss_pred             CCCCCCCCCCCCCCcCccCCCC-CCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--Ccccc
Q 047728           68 HNDSSSPFSKSPWSTHHVSVPT-PSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFS  142 (474)
Q Consensus        68 ~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~  142 (474)
                      |...+..++++|......+... .....++......+..+.+|.+.|.+++++  +++|++|+.||.|+|||.  ++.+.
T Consensus       614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            3345556677777665544322 223334455667888999999999999986  889999999999999995  46677


Q ss_pred             ccccCccCEEEEEecC----CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          143 GFKSNSGLVKAIVISN----EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      .+.+|...|.+++|++    ..+++|+.||.|++||+.+++...                                .+.+
T Consensus       694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--------------------------------~~~~  741 (1249)
T 3sfz_A          694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN--------------------------------TMFG  741 (1249)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE--------------------------------EECC
T ss_pred             EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh--------------------------------eecC
Confidence            8889999999999973    379999999999999998876432                                2335


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee----------------------------------------
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV----------------------------------------  258 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------------------------------------  258 (474)
                      |...|++++|+|++++|++++.||.|++||+.+++....+                                        
T Consensus       742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v  821 (1249)
T 3sfz_A          742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV  821 (1249)
T ss_dssp             CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence            8888999999998888999999999999988765443322                                        


Q ss_pred             --------------e-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728          259 --------------I-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       259 --------------~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  322 (474)
                                    . +|...|.+++|+|++ .+++++.||.|++||+....      ......+|...|.+++|+|+++
T Consensus       822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~  895 (1249)
T 3sfz_A          822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL------KVADCRGHLSWVHGVMFSPDGS  895 (1249)
T ss_dssp             EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc------eeeecCCCccceEEEEECCCCC
Confidence                          1 577889999999999 99999999999999987543      3456678888999999999999


Q ss_pred             EEEEEcCCCcEEEeecCccc------------------------------------------------------------
Q 047728          323 IVYCGSSDGLVNFWERELNL------------------------------------------------------------  342 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~------------------------------------------------------------  342 (474)
                      +|++++.|+.|++||+....                                                            
T Consensus       896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~  975 (1249)
T 3sfz_A          896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY  975 (1249)
T ss_dssp             EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred             EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence            99999999999999854210                                                            


Q ss_pred             ------------------ccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728          343 ------------------SHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV  402 (474)
Q Consensus       343 ------------------~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~  402 (474)
                                        .......+|...+  +++++++++|++++.||.|++||+.+++.   ..+..|...|.+++|
T Consensus       976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A          976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY---VFLQAHQETVKDFRL 1052 (1249)
T ss_dssp             EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE---ECCBCCSSCEEEEEE
T ss_pred             EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce---EEEecCCCcEEEEEE
Confidence                              0011122454444  55667899999999999999999998863   356789999999999


Q ss_pred             eeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ++++.         +++++.||.|++||+.++       .....+.+|...|.++    +|+|||++++++|
T Consensus      1053 ~~~~~---------l~~~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~----~~s~d~~~l~s~s 1104 (1249)
T 3sfz_A         1053 LQDSR---------LLSWSFDGTVKVWNVITG-------RIERDFTCHQGTVLSC----AISSDATKFSSTS 1104 (1249)
T ss_dssp             CSSSE---------EEEEESSSEEEEEETTTT-------CCCEEEECCSSCCCCE----EECSSSSSCEEEC
T ss_pred             cCCCc---------EEEEECCCcEEEEECCCC-------ceeEEEcccCCcEEEE----EECCCCCEEEEEc
Confidence            99764         889999999999999887       3455678899999988    6678888887754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.2e-35  Score=284.05  Aligned_cols=277  Identities=19%  Similarity=0.301  Sum_probs=226.5

Q ss_pred             EEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccc--cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          113 IYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSG--FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       113 i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~--~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      ++.|+++ +++||+|. |++|+|||..  +....  +.+|...|++|+|+  +++|++|+.||+|++||+.+++...   
T Consensus       108 ~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~---  183 (420)
T 4gga_A          108 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---  183 (420)
T ss_dssp             CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred             ceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE---
Confidence            5667887 67888876 8999999954  33333  45678899999998  6799999999999999999876432   


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-ceeeeeeecCcc
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KCLESVIAHDDA  264 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~  264 (474)
                                                   .+.+|...+.+++++  +.+|++|+.|+.+++||.... ..+..+.+|...
T Consensus       184 -----------------------------~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~  232 (420)
T 4gga_A          184 -----------------------------NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  232 (420)
T ss_dssp             -----------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             -----------------------------EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence                                         234589999998875  679999999999999998764 456778899999


Q ss_pred             eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEE--EcCCCcEEEeecCc
Q 047728          265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYC--GSSDGLVNFWEREL  340 (474)
Q Consensus       265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~--~~~dg~i~v~d~~~  340 (474)
                      +..+.+.+++ .+++++.|+.+++|+.......  .........+...|.+++|+|.+ .++++  |+.|+.|++||+.+
T Consensus       233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             eeeeeecCCCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            9999999999 9999999999999998765432  12345567788999999999955 45554  46899999999998


Q ss_pred             ccccceeeeecceeeEEEEecCCEEEEEe--CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728          341 NLSHGGVLRGHKLAILCLVTAGNLVFSGS--ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY  418 (474)
Q Consensus       341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~  418 (474)
                      +................++++++.+++++  .|+.|+|||+.+++  ++..+.+|.+.|++++|+|++.        +|+
T Consensus       311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~gH~~~V~~l~~spdg~--------~l~  380 (420)
T 4gga_A          311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGA--------TVA  380 (420)
T ss_dssp             TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS--------CEE
T ss_pred             cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC--------EEE
Confidence            87765554444445566778888888765  79999999999888  5788999999999999999999        899


Q ss_pred             EecCCCcEEEEEccCCCC
Q 047728          419 SGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       419 s~s~Dg~i~vw~~~~~~~  436 (474)
                      ||+.|++|+|||+.+..+
T Consensus       381 S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          381 SAAADETLRLWRCFELDP  398 (420)
T ss_dssp             EEETTTEEEEECCSCSSC
T ss_pred             EEecCCeEEEEECCCCCc
Confidence            999999999999987643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.4e-36  Score=284.94  Aligned_cols=283  Identities=14%  Similarity=0.196  Sum_probs=230.3

Q ss_pred             ccccCccCEEEEEecC------CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          143 GFKSNSGLVKAIVISN------EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      ...+|...|.+++|++      ..+++++.++.|++|++.+++.........                           .
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~---------------------------~   65 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV---------------------------D   65 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE---------------------------C
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc---------------------------c
Confidence            3457999999999983      457777778899999998765543221110                           0


Q ss_pred             eeccCCeeEEEecCC----CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEc
Q 047728          217 IKHFDAISSLSMSED----QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRR  290 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~  290 (474)
                      ..|...|.+++|+|+    +.+|++|+.|+.|++||+.+++.+..+..|...|.+++|+| ++ .|++++.||.|++||+
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            127788999999998    67999999999999999999999999999999999999999 66 8999999999999999


Q ss_pred             ccCCCceeeeeeeee---ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce---------------------
Q 047728          291 ELQGKGTKHFFSQTL---LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG---------------------  346 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---------------------  346 (474)
                      +....      ...+   ..|...|.+++|+|++++|++++.|+.|++||+++......                     
T Consensus       146 ~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          146 QTDTL------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             TTTEE------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             ecCeE------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            75432      2333   57899999999999999999999999999999987643321                     


Q ss_pred             ------eeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce------------EEEEeecCCccceEEEEEeeC--C
Q 047728          347 ------VLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH------------ICLSMLTGHSGPVKCLAVEKD--D  406 (474)
Q Consensus       347 ------~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~------------~~~~~~~~h~~~v~~l~~~~~--~  406 (474)
                            ....|...+.++.+++++|++++.|+.|++||+.+.+.            ..+..+..|...|++++|+|+  +
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ  299 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred             ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence                  11237788888888899999999999999999987643            346788899999999999999  8


Q ss_pred             ccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC--CCCCCccccCCCCCcCCceeecc
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH--GVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .        +|++|+.||.|++||+.++....   .....+.+|  ...|.++    +|+|||++|+++
T Consensus       300 ~--------~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~----~~s~~~~~l~s~  353 (366)
T 3k26_A          300 K--------MLALGNQVGKLYVWDLEVEDPHK---AKCTTLTHHKCGAAIRQT----SFSRDSSILIAV  353 (366)
T ss_dssp             S--------EEEEECTTSCEEEEECCSSSGGG---CEEEEECCTTCCSCEEEE----EECTTSSEEEEE
T ss_pred             c--------EEEEEecCCcEEEEECCCCCCcc---ccceEEcccccCCceEEE----EeCCCCCeEEEE
Confidence            8        99999999999999998874321   233356666  6888888    667789888875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-34  Score=268.28  Aligned_cols=246  Identities=20%  Similarity=0.235  Sum_probs=200.9

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec----CCEEEEEeCCCeEEE
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRV  172 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~v  172 (474)
                      +..+.+|++.|++++|+  |++||+|+.|++|+|||..    +.+..+.+|.+.|.+++|+    +++|++|+.|++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            34577899999999976  8899999999999999964    4567889999999999995    579999999999999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcC
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~  250 (474)
                      ||+.+++....                              ..+.+|...|.+++|+|+  +.+|++++.|++|++||++
T Consensus        82 Wd~~~~~~~~~------------------------------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~  131 (297)
T 2pm7_B           82 WKEENGRWSQI------------------------------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK  131 (297)
T ss_dssp             EEBSSSCBCCC------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred             EEcCCCceEEE------------------------------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence            99987642211                              123458999999999997  8899999999999999998


Q ss_pred             Ccce--eeeeeecCcceeEEEecCC-------------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728          251 DYKC--LESVIAHDDAVNSIVAGFD-------------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA  314 (474)
Q Consensus       251 ~~~~--~~~~~~~~~~v~~v~~~~~-------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  314 (474)
                      ++..  ...+.+|...|.+++|+|+             + .|++|+.|+.|++||++....  .......+.+|...|.+
T Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred             CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecCCCCceEE
Confidence            7632  4567789999999999996             3 899999999999999985432  12234567789999999


Q ss_pred             EEEcCCC---CEEEEEcCCCcEEEeecCccccc--ceee--eecceee--EEEEecCCEEEEEeCCCcEEEEECC
Q 047728          315 LAISPDA---AIVYCGSSDGLVNFWERELNLSH--GGVL--RGHKLAI--LCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       315 l~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~--~~~~--~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      ++|+|++   .+|++++.|++|++||++.....  ...+  ..|...+  +++++++++|++++.|+.|+||+..
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999984   89999999999999998764311  1122  3455555  5667789999999999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7e-35  Score=283.07  Aligned_cols=276  Identities=18%  Similarity=0.250  Sum_probs=221.9

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT  191 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  191 (474)
                      +.+++++|++|+.||.|++||..  +....+.+|...|.+++|+  +++|++++.|+.|++||+.+++...         
T Consensus       105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~---------  175 (420)
T 3vl1_A          105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR---------  175 (420)
T ss_dssp             ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE---------
T ss_pred             EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce---------
Confidence            34569999999999999999954  4455667999999999998  6699999999999999998876532         


Q ss_pred             cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec---C------
Q 047728          192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH---D------  262 (474)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~------  262 (474)
                                             .+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|   .      
T Consensus       176 -----------------------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~  232 (420)
T 3vl1_A          176 -----------------------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI  232 (420)
T ss_dssp             -----------------------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEE
T ss_pred             -----------------------EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEE
Confidence                                   23459999999999999999999999999999999999998888753   2      


Q ss_pred             ---------------cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEE
Q 047728          263 ---------------DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVY  325 (474)
Q Consensus       263 ---------------~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~  325 (474)
                                     ..+.+++|+|++ .+++++.||.|++||++....     .......|...|.+++|+|++. +|+
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~  307 (420)
T 3vl1_A          233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----TIQLPSKFTCSCNSLTVDGNNANYIY  307 (420)
T ss_dssp             EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-----EEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred             EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-----eEEcccccCCCceeEEEeCCCCCEEE
Confidence                           444555567888 899999999999999986543     2333446788999999999998 999


Q ss_pred             EEcCCCcEEEeecCcccccceeeee-cceeeEEE-EecCCEEEEEeCCCcEEEEECCCCceE-------EEEeecCCccc
Q 047728          326 CGSSDGLVNFWERELNLSHGGVLRG-HKLAILCL-VTAGNLVFSGSADMSICIWRRKENEHI-------CLSMLTGHSGP  396 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~-~~~~~~l~sgs~dg~i~iwd~~~~~~~-------~~~~~~~h~~~  396 (474)
                      +++.||.|++||+++.......+.. |...+.++ .+++++|++++.|+.|++||+......       ....+..|.+.
T Consensus       308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (420)
T 3vl1_A          308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA  387 (420)
T ss_dssp             EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred             EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence            9999999999999987664455555 55556544 347889999999999999998763110       12345678899


Q ss_pred             eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      |.+++|+|++...    . .|++.+.+|.+.+|++++
T Consensus       388 v~~~~~s~~~~~~----g-~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          388 VSQFCYVSDDESN----G-EVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCEEEEECCSSSS----C-EEEEEETTTEEEEEESCC
T ss_pred             eEEEEEccCCCCc----c-eEEEEcCCceEEEEeccC
Confidence            9999999998610    0 255666789999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.3e-35  Score=275.39  Aligned_cols=285  Identities=20%  Similarity=0.299  Sum_probs=226.9

Q ss_pred             ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ..++++|.+.|++|+|+   +++|+||+.||+|+|||+...+.......                           ..+.
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~---------------------------~~l~   83 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------------------------RALR   83 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE---------------------------EEEC
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee---------------------------EEEe
Confidence            44688999999999998   46899999999999999987654322211                           2345


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +|...|.+++|+|++++|++++.|+.|++|+............+...+..+.+.+++ .+++++.|+.+++||+..... 
T Consensus        84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-  162 (340)
T 4aow_A           84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-  162 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-
T ss_pred             CCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-
Confidence            699999999999999999999999999999999999888888888999999999988 899999999999999864322 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCC--CEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCC
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDA--AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADM  372 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg  372 (474)
                          .......|...+..++|++++  .++++++.|+.|++||+++.... ..+.+|...|.+  +++++++|++|+.|+
T Consensus       163 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          163 ----YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             ----EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             ----EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee-eEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence                344556788999999999854  57889999999999999987654 456678777755  456899999999999


Q ss_pred             cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC--CCcccccccCC
Q 047728          373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV--STTQQHPLEGH  450 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~--~~~~~~~~~~~  450 (474)
                      .|++||+++.+  .+..+. +...|.+++|+|++.         +++++.|+.|++||+........  .........+|
T Consensus       238 ~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~---------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h  305 (340)
T 4aow_A          238 QAMLWDLNEGK--HLYTLD-GGDIINALCFSPNRY---------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE  305 (340)
T ss_dssp             EEEEEETTTTE--EEEEEE-CSSCEEEEEECSSSS---------EEEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred             eEEEEEeccCc--eeeeec-CCceEEeeecCCCCc---------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence            99999999887  345555 446899999999876         56677899999999986532211  11222345578


Q ss_pred             CCCCCccccCCCCCcCCceeeccC
Q 047728          451 GVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       451 ~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ...|+++    +|+|||++|+++|
T Consensus       306 ~~~v~~l----~~s~dg~~l~sgs  325 (340)
T 4aow_A          306 PPQCTSL----AWSADGQTLFAGY  325 (340)
T ss_dssp             CCCEEEE----EECTTSSEEEEEE
T ss_pred             CCCEEEE----EECCCCCEEEEEe
Confidence            8889988    6788899888763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.9e-35  Score=268.78  Aligned_cols=250  Identities=16%  Similarity=0.265  Sum_probs=203.9

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ..+.+|.+.|.+++|+  +++|++|+.|++|+||++.......                              ...+.+|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~------------------------------~~~l~gH   52 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL------------------------------IDTLTGH   52 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC------------------------------CEEECCC
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE------------------------------EEEEccc
Confidence            4567899999999998  7799999999999999997542111                              1234569


Q ss_pred             cCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEccc
Q 047728          220 FDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       220 ~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~  292 (474)
                      ..+|.+++|++  ++++|++|+.|++|++||+++++  .+..+..|...|.+++|+|+  + +|++++.|+.|++||++.
T Consensus        53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            99999999986  48999999999999999998874  56667789999999999997  5 899999999999999976


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCC-------------CCEEEEEcCCCcEEEeecCcccc---cceeeeecceeeE
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPD-------------AAIVYCGSSDGLVNFWERELNLS---HGGVLRGHKLAIL  356 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------------~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~  356 (474)
                      ....    ....+..|...|.+++|+|+             +++|++|+.|+.|++||++....   ....+.+|...|.
T Consensus       133 ~~~~----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~  208 (297)
T 2pm7_B          133 NGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (297)
T ss_dssp             SSCB----CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             CCce----eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence            4321    12456688999999999996             57999999999999999976542   3345678888776


Q ss_pred             EEE--ec---CCEEEEEeCCCcEEEEECCCCce-EEEEee--cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728          357 CLV--TA---GNLVFSGSADMSICIWRRKENEH-ICLSML--TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       357 ~~~--~~---~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                      ++.  |+   +.+|++|+.|++|+|||++.... .....+  ..|...|.+++|+|+++        +|++++.|+.|+|
T Consensus       209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~las~~~D~~v~l  280 (297)
T 2pm7_B          209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN--------VLALSGGDNKVTL  280 (297)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC--------CEEEEETTSCEEE
T ss_pred             EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC--------EEEEEcCCCcEEE
Confidence            655  45   37999999999999999976431 112233  57889999999999999        8999999999999


Q ss_pred             EEccC
Q 047728          429 WRVSE  433 (474)
Q Consensus       429 w~~~~  433 (474)
                      |+...
T Consensus       281 w~~~~  285 (297)
T 2pm7_B          281 WKENL  285 (297)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=310.86  Aligned_cols=351  Identities=8%  Similarity=0.062  Sum_probs=239.9

Q ss_pred             CCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccc-------------cccccCccCEEEEEecC---
Q 047728           97 FSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREF-------------SGFKSNSGLVKAIVISN---  158 (474)
Q Consensus        97 ~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~-------------~~~~~h~~~V~~i~~~~---  158 (474)
                      .....++..+. |.+.|++++++  +++|++|+.||+|++||.....             ..+.+|.+.|.+++|++   
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            33445566664 77889999986  8899999999999999965322             34577999999999985   


Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA  238 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  238 (474)
                      ..|++|+.||.| +||+.+++..........+...       ....       .......|...|++++|+|++++|++|
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~-------~~~~-------~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP-------GGDF-------SEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC-------CSTT-------CCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC-------Cccc-------ccccccccCCCeEEEEEcCCCCEEEEE
Confidence            489999999999 9999987654332211000000       0000       001223477899999999999999999


Q ss_pred             ECCCcEEEEEcCCcceeee--e---ee-------------cCcceeEEEec----CCC--eEEEeeCC-----CcEEEEE
Q 047728          239 SWDKTFKVWRTSDYKCLES--V---IA-------------HDDAVNSIVAG----FDG--LVFTGSAD-----GTVKVWR  289 (474)
Q Consensus       239 s~dg~i~iwd~~~~~~~~~--~---~~-------------~~~~v~~v~~~----~~~--~l~~~~~d-----g~i~iwd  289 (474)
                      +.|++|++||+++++++..  +   ..             |...|.+++|+    |++  .+++|+.|     ..+++|+
T Consensus       230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence            9999999999999887653  2   11             34578999994    443  56666554     2677776


Q ss_pred             cccC-----------------------------CC-----------------------------ceeee--------ee-
Q 047728          290 RELQ-----------------------------GK-----------------------------GTKHF--------FS-  302 (474)
Q Consensus       290 ~~~~-----------------------------~~-----------------------------~~~~~--------~~-  302 (474)
                      +...                             ..                             .....        .. 
T Consensus       310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~  389 (902)
T 2oaj_A          310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK  389 (902)
T ss_dssp             EEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECC
T ss_pred             cCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccc
Confidence            3100                             00                             00000        00 


Q ss_pred             -----eeeecccccEEE----------------------------------EEEcCCCCEEEEEcCCCcEEEeecCcccc
Q 047728          303 -----QTLLKQECAVTA----------------------------------LAISPDAAIVYCGSSDGLVNFWERELNLS  343 (474)
Q Consensus       303 -----~~~~~~~~~v~~----------------------------------l~~~~~~~~l~~~~~dg~i~v~d~~~~~~  343 (474)
                           ..+..|...|++                                  ++|+|++++|++|+.|++|++||+..+..
T Consensus       390 ~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~  469 (902)
T 2oaj_A          390 ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI  469 (902)
T ss_dssp             GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT
T ss_pred             cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc
Confidence                 000112233444                                  44578899999999999999999987742


Q ss_pred             cc-eee---------eecceee--EEEEecCCEEEEEeCCCcEEEEECCCCce---------------------------
Q 047728          344 HG-GVL---------RGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEH---------------------------  384 (474)
Q Consensus       344 ~~-~~~---------~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---------------------------  384 (474)
                      .. ..+         .+|...|  ++|+|++++||+|+.||+|+|||+.+++.                           
T Consensus       470 ~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (902)
T 2oaj_A          470 QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV  549 (902)
T ss_dssp             TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred             cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence            21 111         1565555  66777899999999999999999976521                           


Q ss_pred             ----------------EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccccc
Q 047728          385 ----------------ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLE  448 (474)
Q Consensus       385 ----------------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~  448 (474)
                                      .++..+.+|.++|++|+|+|++         +||+|+.|++|+|||+.++...  .......+.
T Consensus       550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG---------~lAsgs~D~tv~lwd~~~~~~~--~~~~~~~~~  618 (902)
T 2oaj_A          550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG---------FVGIAYAAGSLMLIDRRGPAII--YMENIREIS  618 (902)
T ss_dssp             EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS---------EEEEEETTSEEEEEETTTTEEE--EEEEGGGTC
T ss_pred             cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc---------EEEEEeCCCcEEEEECCCCeEE--EEeehhHhc
Confidence                            2467788999999999999998         4999999999999998765321  001123454


Q ss_pred             -CCCCCCCccccC-CCCCcCC---ceeeccC
Q 047728          449 -GHGVAPNSLPYA-PSFSSQG---RICQKRS  474 (474)
Q Consensus       449 -~~~~~v~~l~~~-p~~s~Dg---~~l~~~s  474 (474)
                       +|...|++++|+ ...+|||   ++|+++|
T Consensus       619 ~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs  649 (902)
T 2oaj_A          619 GAQSACVTCIEFVIMEYGDDGYSSILMVCGT  649 (902)
T ss_dssp             SSCCCCEEEEEEEEEECTTSSSEEEEEEEEE
T ss_pred             cccccceEEEEEEEEecCCCCCcceEEEEEe
Confidence             899999999544 1122775   7887764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-34  Score=293.38  Aligned_cols=339  Identities=13%  Similarity=0.146  Sum_probs=248.5

Q ss_pred             eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC------ccccccccCccC-EEEEEecC----CEEEEEeCCCeEEEEe
Q 047728          108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ------REFSGFKSNSGL-VKAIVISN----EKIFSGHQDGKIRVWK  174 (474)
Q Consensus       108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~------~~~~~~~~h~~~-V~~i~~~~----~~l~s~~~dg~i~vwd  174 (474)
                      .|.+.|.+++++  +++|++++ ++.|+|||..      +....+.+|... |.+++|++    ++|++++.||.|++||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            567788876665  88999998 7899999954      467778899999 99999976    6899999999999999


Q ss_pred             cCCC------Ccceeeeecc----------cCccceeeeeecCCC--CeEEEee--eccceeeeccCCeeEEEecCCCC-
Q 047728          175 VSSK------DASIHKRVGT----------LPTFKDFIKCSMKPS--NYIEVRR--HRNGLWIKHFDAISSLSMSEDQN-  233 (474)
Q Consensus       175 ~~~~------~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~-  233 (474)
                      +.++      +.........          .+....++....+..  ..+.++.  .....+.+|...|.+++|+|++. 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  174 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc
Confidence            9754      1111111111          111111111111111  1222222  12245568999999999999987 


Q ss_pred             EEEEEECCCcEEEEEcCCcceeeeeeecCc---ceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-e-
Q 047728          234 LLYSASWDKTFKVWRTSDYKCLESVIAHDD---AVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-L-  306 (474)
Q Consensus       234 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~-  306 (474)
                      +|++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ + .+++++.||.|++||++....      ...+ . 
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~  248 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF------LKYIEDD  248 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE------EEECCBT
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE------eEEeccc
Confidence            899999999999999999999999999999   9999999999 7 899999999999999976542      3334 4 


Q ss_pred             --cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee------------------------------------
Q 047728          307 --KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL------------------------------------  348 (474)
Q Consensus       307 --~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------------------------------------  348 (474)
                        .|...|.+++|+ ++.+|++++.|+.|++||++++.......                                    
T Consensus       249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~  327 (615)
T 1pgu_A          249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG  327 (615)
T ss_dssp             TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence              788999999999 99999999999999999987553221111                                    


Q ss_pred             --------eeccee---------------------------------eEEEE----------------------------
Q 047728          349 --------RGHKLA---------------------------------ILCLV----------------------------  359 (474)
Q Consensus       349 --------~~~~~~---------------------------------v~~~~----------------------------  359 (474)
                              .+|...                                 +.++.                            
T Consensus       328 ~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  407 (615)
T 1pgu_A          328 HDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS  407 (615)
T ss_dssp             EEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred             CCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence                    111111                                 11111                            


Q ss_pred             ----------------------------------------------ecCCEEEEEeC-CCcEEEEECCCCceEEEEeecC
Q 047728          360 ----------------------------------------------TAGNLVFSGSA-DMSICIWRRKENEHICLSMLTG  392 (474)
Q Consensus       360 ----------------------------------------------~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~  392 (474)
                                                                    +.+++|++++. |+.|++||+.+++... ..+.+
T Consensus       408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~  486 (615)
T 1pgu_A          408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTP  486 (615)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSC
T ss_pred             CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCC
Confidence                                                          11445555665 6666666666554221 56778


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC-CCCCCCccccCCCCCc------
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG-HGVAPNSLPYAPSFSS------  465 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~p~~s~------  465 (474)
                      |...|++++|+|+++        +|++++.||.|++|++.++       .....+.+ |...|+++    +|+|      
T Consensus       487 ~~~~v~~~~~s~~g~--------~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~h~~~v~~~----~~sp~~~~~~  547 (615)
T 1pgu_A          487 LRAKPSYISISPSET--------YIAAGDVMGKILLYDLQSR-------EVKTSRWAFRTSKINAI----SWKPAEKGAN  547 (615)
T ss_dssp             CSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTT-------EEEECCSCCCSSCEEEE----EECCCC----
T ss_pred             ccCceEEEEECCCCC--------EEEEcCCCCeEEEeeCCCC-------cceeEeecCCCCceeEE----EEcCcccccc
Confidence            999999999999999        9999999999999999887       44455666 89999999    5556      


Q ss_pred             ----CCceeeccC
Q 047728          466 ----QGRICQKRS  474 (474)
Q Consensus       466 ----Dg~~l~~~s  474 (474)
                          ||++|++++
T Consensus       548 ~~~~~~~~l~~~~  560 (615)
T 1pgu_A          548 EEEIEEDLVATGS  560 (615)
T ss_dssp             --CCSCCEEEEEE
T ss_pred             ccccCCCEEEEEc
Confidence                888888753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-35  Score=284.04  Aligned_cols=277  Identities=16%  Similarity=0.180  Sum_probs=221.8

Q ss_pred             ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728          141 FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF  220 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  220 (474)
                      ...+.+|.+.|.+++|++++|++|+.||.|++|++...+......                          ....+.+|.
T Consensus         9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------------------~~~~~~~h~   62 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKD--------------------------KSYSHFVHK   62 (397)
T ss_dssp             EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGG--------------------------GEEEEECCT
T ss_pred             hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCC--------------------------cceEEecCC
Confidence            445778999999999999999999999999999999876211000                          002334599


Q ss_pred             CCeeEEEecCC----C---CEEEEEECCCcEEEEEcCCcce-----eeeeeec-----CcceeEEEec----CCC-e-EE
Q 047728          221 DAISSLSMSED----Q---NLLYSASWDKTFKVWRTSDYKC-----LESVIAH-----DDAVNSIVAG----FDG-L-VF  277 (474)
Q Consensus       221 ~~V~~l~~~~~----~---~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~v~~~----~~~-~-l~  277 (474)
                      ..|.+++|+|+    +   ++|++++.|+.|++||+.+++.     +..+..|     ...|.+++|+    |++ . |+
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  142 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV  142 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEE
Confidence            99999999999    9   9999999999999999998887     8888888     5899999999    888 7 99


Q ss_pred             EeeCCCcEEEEEccc------CCCceeeeeeeee-------ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728          278 TGSADGTVKVWRREL------QGKGTKHFFSQTL-------LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH  344 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  344 (474)
                      +++.||.|++||++.      ..... ......+       ..|...|.+++|+|++ +|++++.|+.|++||+++....
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  220 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL  220 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE
T ss_pred             EEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee
Confidence            999999999999986      33311 0011133       4578899999999999 9999999999999999887554


Q ss_pred             ceeeee---c---ceee--EEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecC-------------CccceEEE
Q 047728          345 GGVLRG---H---KLAI--LCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTG-------------HSGPVKCL  400 (474)
Q Consensus       345 ~~~~~~---~---~~~v--~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~-------------h~~~v~~l  400 (474)
                       ..+..   |   ...+  +++++++++|++++.|   +.|++||+.+++  .+..+.+             |...|.++
T Consensus       221 -~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~  297 (397)
T 1sq9_A          221 -YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSL  297 (397)
T ss_dssp             -EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEE
T ss_pred             -EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEE
Confidence             34444   6   5555  4555689999999999   999999999887  4567777             99999999


Q ss_pred             EEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccccc------CC---------------CCCCCcccc
Q 047728          401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLE------GH---------------GVAPNSLPY  459 (474)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~l~~  459 (474)
                      +|+|++.        +|++++.||.|++||+.+++       ....+.      +|               ...|.++  
T Consensus       298 ~~~~~~~--------~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~--  360 (397)
T 1sq9_A          298 SFNDSGE--------TLCSAGWDGKLRFWDVKTKE-------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV--  360 (397)
T ss_dssp             EECSSSS--------EEEEEETTSEEEEEETTTTE-------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE--
T ss_pred             EECCCCC--------EEEEEeCCCeEEEEEcCCCc-------eeEEEecccCcccchhhhhccccccccccCCceeEE--
Confidence            9999999        99999999999999998873       333444      45               8888888  


Q ss_pred             CCCCCcCC
Q 047728          460 APSFSSQG  467 (474)
Q Consensus       460 ~p~~s~Dg  467 (474)
                        +|+|||
T Consensus       361 --~~~~~g  366 (397)
T 1sq9_A          361 --KFLKKG  366 (397)
T ss_dssp             --EEECTT
T ss_pred             --Eecccc
Confidence              556676

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.2e-34  Score=264.62  Aligned_cols=276  Identities=18%  Similarity=0.281  Sum_probs=223.0

Q ss_pred             EEEEEEc-CCEEEEeeCCCcEEEEeCC--cccccc--ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          113 IYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGF--KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       113 i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~--~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      .++|+++ +++||+|. |++|+|||..  +.+..+  .+|...|.+++|+  +++|++|+.||+|++|++++++...   
T Consensus        28 ~~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~---  103 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---  103 (318)
T ss_dssp             CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred             ceEEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE---
Confidence            3567777 55777775 8999999954  444444  4688899999998  6799999999999999999876542   


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-ceeeeeeecCcc
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KCLESVIAHDDA  264 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~  264 (474)
                                                   .+.+|...+.++.+  ++..+++++.++.+++|+.... ..+..+.+|...
T Consensus       104 -----------------------------~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (318)
T 4ggc_A          104 -----------------------------NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  152 (318)
T ss_dssp             -----------------------------EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             -----------------------------EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence                                         23448888877655  5679999999999999998865 456677889999


Q ss_pred             eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCE---EEEEcCCCcEEEeecCc
Q 047728          265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAI---VYCGSSDGLVNFWEREL  340 (474)
Q Consensus       265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---l~~~~~dg~i~v~d~~~  340 (474)
                      +..+.+.+++ .+++++.|+.|++||++......  ........+...|.+++++|++..   +++++.++.|++||.+.
T Consensus       153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW--VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS--CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEEecCcceeEEECCCCcccc--cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence            9999999999 99999999999999998654321  223455667888999999996653   34677889999999988


Q ss_pred             ccccceeeeecceeeEEEEecCCEEEEEe--CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728          341 NLSHGGVLRGHKLAILCLVTAGNLVFSGS--ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY  418 (474)
Q Consensus       341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~  418 (474)
                      ................++.++++.+++++  .|+.|++||+++++  ++..+.+|.+.|++++|+|++.        +|+
T Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spdg~--------~l~  300 (318)
T 4ggc_A          231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGA--------TVA  300 (318)
T ss_dssp             CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS--------CEE
T ss_pred             ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC--------EEE
Confidence            77665555555556677888888877655  79999999999888  5778999999999999999999        899


Q ss_pred             EecCCCcEEEEEccCCC
Q 047728          419 SGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       419 s~s~Dg~i~vw~~~~~~  435 (474)
                      ||+.||+|+|||+.+..
T Consensus       301 S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          301 SAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTEEEEECCSCCC
T ss_pred             EEecCCeEEEEECCCCC
Confidence            99999999999997653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-35  Score=281.88  Aligned_cols=290  Identities=12%  Similarity=0.140  Sum_probs=233.7

Q ss_pred             ecCcEEEEEEc--CCEEEEeeCCCcEEEEeC-CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728          109 EEGHIYSLAAA--GDLLYTGSDSKNIRVWKN-QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       109 h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~-~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~  183 (474)
                      |.+.|.+++++  +++|++|+.||.|++||. .+.+..+..|...|.+++|+  +++|++++.||.|++||+.+++....
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            68899999987  789999999999999994 35667788899999999998  67899999999999999988765433


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD  263 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  263 (474)
                      .........            .     ............+.+++|++++ .+++++.|+.|++||+.+++.+..+..|..
T Consensus       187 ~~~~~~~~~------------~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          187 FELKETGGS------------S-----INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             ECCC--------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred             eeccccCcc------------c-----eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence            221110000            0     0000011223338899999874 688999999999999999999999999999


Q ss_pred             ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      .|.+++|+|++ .|++++.|+.|++||++....      ...+..|...|.+++|+|++ ++++++.|+.|++||+++..
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBSC------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence            99999999999 999999999999999886543      44556788999999999999 99999999999999998776


Q ss_pred             ccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCce------------------EEEEeecCCcc--ceEEE
Q 047728          343 SHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEH------------------ICLSMLTGHSG--PVKCL  400 (474)
Q Consensus       343 ~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~------------------~~~~~~~~h~~--~v~~l  400 (474)
                      .. ..+..|...+.  ++++++++|++++.||.|++||+.+.+.                  ..+..+.+|..  .|+++
T Consensus       322 ~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  400 (425)
T 1r5m_A          322 LL-ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL  400 (425)
T ss_dssp             EE-EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred             Ee-EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence            54 44556666664  5566799999999999999999986650                  13577888876  99999


Q ss_pred             EEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +|+|+++        +|++++.||.|++|+++
T Consensus       401 ~~s~~~~--------~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          401 SWNCAGN--------KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EECTTSS--------EEEEEESSSCCEEEECC
T ss_pred             EccCCCc--------eEEEEecCceEEEEeec
Confidence            9999999        89999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=290.95  Aligned_cols=283  Identities=12%  Similarity=0.107  Sum_probs=211.2

Q ss_pred             eeeeeecCcEEEEEEcC--------CEEEEeeCCCcEEEEeCCcc-------------ccccccCccCEEEEEec-CCEE
Q 047728          104 GSLVREEGHIYSLAAAG--------DLLYTGSDSKNIRVWKNQRE-------------FSGFKSNSGLVKAIVIS-NEKI  161 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~~--------~~l~tgs~dg~v~vwd~~~~-------------~~~~~~h~~~V~~i~~~-~~~l  161 (474)
                      ..+.+|.+.|++++|+.        ++||+|+.||+|+|||....             ...+.+|...|.+++|+ ++.|
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l  280 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV  280 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence            34667889999999873        59999999999999996532             22567899999999997 6799


Q ss_pred             EEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE--EecCCC-CEEEEE
Q 047728          162 FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL--SMSEDQ-NLLYSA  238 (474)
Q Consensus       162 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~  238 (474)
                      ++|+.||+|++||+.++....                               ..+.+|...|.++  +|++++ .+|++|
T Consensus       281 asgs~DgtV~lWD~~~~~~~~-------------------------------~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPS-------------------------------FYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCS-------------------------------EEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             EEEeCCCEEEEEECCCCCCce-------------------------------EEeecccccEEEEEEEcCCCCCeEEEEe
Confidence            999999999999998653211                               1235599999999  578887 899999


Q ss_pred             ECCCcEEEEEcCCcceeeeeeecCc--ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          239 SWDKTFKVWRTSDYKCLESVIAHDD--AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       239 s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      +.|++|+|||+++++++..+.+|..  .|.+++|+|++ .+++++.|++|++||++....      ...+.+|...|+++
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~------~~~l~gH~~~V~sv  403 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA------VHPLVSRETTITAI  403 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC------CEEEEECSSCEEEE
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc------ceeeecCCCceEEE
Confidence            9999999999999988888877764  58899999988 899999999999999986543      34566899999999


Q ss_pred             EEcCCCCEEEEEcCCCcEEEeecCcccccceeee---ec-ceee--EEEEecCCEEEEEeCCCcEEEEECC-CCceEEEE
Q 047728          316 AISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GH-KLAI--LCLVTAGNLVFSGSADMSICIWRRK-ENEHICLS  388 (474)
Q Consensus       316 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~-~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~  388 (474)
                      +|+|++++|++|+.|++|++||+.... ......   .+ ...+  ++++++++.+. ...+  +.+|+.. ++.  ++.
T Consensus       404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~--~~~  477 (524)
T 2j04_B          404 GVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDV--SKA  477 (524)
T ss_dssp             ECCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-----------
T ss_pred             EeCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCc--cee
Confidence            999999999999999999999986542 211110   11 1123  44566777442 2222  3333332 223  466


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .+.+|..+|.+|+|+|++...     .+|++|+.||.|+||++.-.
T Consensus       478 ~l~gh~~~V~~Vafsp~~~~~-----~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          478 KIDAHGINITCTKWNETSAGG-----KCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ----CCCSCCCEEECCSTTTT-----TEEEEECTTSEEEEEECSCC
T ss_pred             eecCCCceEEEEECCCCCCcc-----HHHHhhccCceEEEEEcccc
Confidence            888999999999999995300     07999999999999998653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-34  Score=272.19  Aligned_cols=277  Identities=14%  Similarity=0.173  Sum_probs=231.5

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ..+.+|...|++++|+  +++|++++.||.|++||+.+++...                                .+.+|
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--------------------------------~~~~h   73 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--------------------------------TLDGH   73 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--------------------------------EECCC
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--------------------------------hhhhc
Confidence            4478899999999998  6799999999999999998875432                                23459


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccC
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQ  293 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~  293 (474)
                      ...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+.+++|+|++ .+++++.+     +.|++||++..
T Consensus        74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            9999999999999999999999999999999999988887 88999999999999 88888888     99999999865


Q ss_pred             CCceeee-----eeeeeecccc--cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCE
Q 047728          294 GKGTKHF-----FSQTLLKQEC--AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNL  364 (474)
Q Consensus       294 ~~~~~~~-----~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~  364 (474)
                      .......     .......+..  .+.+++|+|++++|++++.||.|++||+++.......+..|...+.+  +++++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  232 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY  232 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence            4322111     1223334444  89999999999999999999999999999855555667777777655  4568999


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--------------cEEEEE
Q 047728          365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK--------------SVKMWR  430 (474)
Q Consensus       365 l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--------------~i~vw~  430 (474)
                      |++++.|+.|++||+.+++.  +..+. +...+.+++|+|++.        ++++++.++              .|++|+
T Consensus       233 l~~~~~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          233 FITSSRDTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKE--------FIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEEEETTSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSS--------EEEEEECCC-------------CEEEEEE
T ss_pred             EEEecCCceEEEEECCCCce--eeeec-CCCCceeEEecCCCc--------eEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            99999999999999998874  34444 778999999999999        899999888              899999


Q ss_pred             ccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          431 VSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      +.++       .....+.+|...|.++    +|+|||++|+++
T Consensus       302 ~~~~-------~~~~~~~~~~~~v~~~----~~s~~~~~l~s~  333 (369)
T 3zwl_B          302 KIFE-------EEIGRVQGHFGPLNTV----AISPQGTSYASG  333 (369)
T ss_dssp             TTTC-------CEEEEEECCSSCEEEE----EECTTSSEEEEE
T ss_pred             cCCC-------cchhheecccCcEEEE----EECCCCCEEEEE
Confidence            9887       4556778899999999    667788888775

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-35  Score=290.87  Aligned_cols=265  Identities=12%  Similarity=0.054  Sum_probs=199.3

Q ss_pred             eeeecCcEEEEEEc--C---------CEEEEeeCCCcEEEEeCCccccccccCccCEEEEEecCCEEEEEeCCCeEEEEe
Q 047728          106 LVREEGHIYSLAAA--G---------DLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       106 l~~h~~~i~~~~~~--~---------~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd  174 (474)
                      +..+.+.|++++|.  +         ++||+|+.++..            .       .-...+..|++++.|++|+||+
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------~-------~~~~~~~~laS~s~D~tI~iWd  189 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------E-------PLNEHLEMFDKEKHSSCIQIFK  189 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------CEEEEEEE
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------C-------ccchhhhhhccCCCCceEEEEE
Confidence            34467889887765  4         689998876531            0       0012356789999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC------CCEEEEEECCCcEEEEE
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED------QNLLYSASWDKTFKVWR  248 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~s~dg~i~iwd  248 (474)
                      +.+++......                            ..+..|.+.|.+++|+|+      +.+|++++.||+|++||
T Consensus       190 ~~~~~~~~~~~----------------------------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd  241 (524)
T 2j04_B          190 MNTSTLHCVKV----------------------------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLE  241 (524)
T ss_dssp             EETTTCCEEEE----------------------------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEE
T ss_pred             ccCCCCCceEE----------------------------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEE
Confidence            98765421110                            123347889999999996      57999999999999999


Q ss_pred             cCCcce-----------eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE--
Q 047728          249 TSDYKC-----------LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL--  315 (474)
Q Consensus       249 ~~~~~~-----------~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l--  315 (474)
                      +.+++.           ...+.+|...|.+++|++++.|++|+.||+|++||++....     ....+..|...|.++  
T Consensus       242 ~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~-----~~~~~~~H~~~V~sv~~  316 (524)
T 2j04_B          242 IIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVST  316 (524)
T ss_dssp             CCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSS-----CSEEEECSSSCEEEEEE
T ss_pred             cCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC-----ceEEeecccccEEEEEE
Confidence            987642           23677899999999999888999999999999999986432     234567899999999  


Q ss_pred             EEcCCC-CEEEEEcCCCcEEEeecCcccccceeeeecc----eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728          316 AISPDA-AIVYCGSSDGLVNFWERELNLSHGGVLRGHK----LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML  390 (474)
Q Consensus       316 ~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  390 (474)
                      +|+|++ .+|++++.|++|++||+++..... .+.+|.    ...++++|+++.+++++.|++|++||++.+.  ++..+
T Consensus       317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~--~~~~l  393 (524)
T 2j04_B          317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF--AVHPL  393 (524)
T ss_dssp             ECCTTSCCEEEEEETTSEEEEECGGGHHHHC-EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT--CCEEE
T ss_pred             EcCCCCCeEEEEeccCCeEEEEECCCCCccc-ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc--cceee
Confidence            568887 899999999999999998876543 333443    2347888999999999999999999999877  34567


Q ss_pred             cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      .+|.+.|++|+|+|+++        +|++|+.||+|++|++..
T Consensus       394 ~gH~~~V~sva~Sp~g~--------~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          394 VSRETTITAIGVSRLHP--------MVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EECSSCEEEEECCSSCC--------BCEEEETTTEEECCBSCS
T ss_pred             ecCCCceEEEEeCCCCC--------eEEEEECCCEEEEEechH
Confidence            78999999999999999        899999999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.8e-34  Score=270.78  Aligned_cols=276  Identities=15%  Similarity=0.161  Sum_probs=230.9

Q ss_pred             eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-----cccccccCccCEEEEEec--CC-EEEEEeCCCeEEEE
Q 047728          104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-----EFSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVW  173 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-----~~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vw  173 (474)
                      ....+|.+.|++++++  +++|++|+.||.|++|+...     ....+..|...|.+++|+  ++ +|++++.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3345899999998876  88999999999999998442     245667899999999997  77 89999999999999


Q ss_pred             ec-CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee--ccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728          174 KV-SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK--HFDAISSLSMSEDQNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       174 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~  250 (474)
                      ++ ..++..                                 .+.+  |...|.+++|+| +++|++++.|+.|++||++
T Consensus        85 d~~~~~~~~---------------------------------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~  130 (342)
T 1yfq_A           85 DLIGSPSFQ---------------------------------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             CSSSSSSEE---------------------------------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred             EeccCCceE---------------------------------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence            99 776431                                 2345  889999999999 9999999999999999998


Q ss_pred             C---------cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcC-
Q 047728          251 D---------YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISP-  319 (474)
Q Consensus       251 ~---------~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~-  319 (474)
                      +         ++++..+. |...|.+++|++++ +++++.|+.|++||++. ....    .......+...+.+++|+| 
T Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCC----CEEEECSCSSCEEEEEECSG
T ss_pred             ccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCcccccc----ceeeecCCCCceeEEEECCC
Confidence            8         77777776 88999999999987 99999999999999986 3321    1234456778999999999 


Q ss_pred             CCCEEEEEcCCCcEEEeecCcc-----cccceeeeecce---------ee--EEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728          320 DAAIVYCGSSDGLVNFWERELN-----LSHGGVLRGHKL---------AI--LCLVTAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       320 ~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~---------~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      +++++++++.||.|++|+++..     ......+..|..         .+  +++++++++|++|+.||.|++||+.+++
T Consensus       205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            9999999999999999999876     344456666633         55  5556689999999999999999999887


Q ss_pred             eEEEEeecCC-ccceEEEEEeeCCccccccceEEEEEecCCCc-EEEEEc
Q 047728          384 HICLSMLTGH-SGPVKCLAVEKDDESLSREKRWILYSGSLDKS-VKMWRV  431 (474)
Q Consensus       384 ~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~-i~vw~~  431 (474)
                        .+..+.+| ..+|++++  |++.        +|++++.||. .+.|..
T Consensus       285 --~~~~~~~~h~~~v~~~~--~~~~--------~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          285 --KIKNFAKFNEDSVVKIA--CSDN--------ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             --EEEECCCCSSSEEEEEE--ECSS--------EEEEEEECTHHHHCSSS
T ss_pred             --HhhhhhcccCCCceEec--CCCC--------eEEEEecCCcccccccc
Confidence              46778888 99999999  9998        9999999998 655554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.2e-35  Score=272.79  Aligned_cols=255  Identities=16%  Similarity=0.231  Sum_probs=198.7

Q ss_pred             eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec----CCEEEEEeCCCeEEEEe
Q 047728          105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd  174 (474)
                      .+.+|++.|++++|+  |++||+|+.|++|+|||...    .+..+.+|.+.|.+++|+    +++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999986  89999999999999999542    356788999999999995    57999999999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcCCc
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      +.++......                              .+.+|...|.+++|+|+  +.+|++|+.|++|++||++++
T Consensus        88 ~~~~~~~~~~------------------------------~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           88 EENGTWEKSH------------------------------EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CSSSCCCEEE------------------------------EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             CCCCcceEEE------------------------------EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9876432111                              23459999999999997  789999999999999999875


Q ss_pred             ce---eeeeeecCcceeEEEecCC-----------------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728          253 KC---LESVIAHDDAVNSIVAGFD-----------------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA  311 (474)
Q Consensus       253 ~~---~~~~~~~~~~v~~v~~~~~-----------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (474)
                      ..   ...+.+|...|.+++|+|+                 + .|++|+.|+.|++||++....   ......+.+|...
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l~~h~~~  214 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKLEAHSDW  214 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECCBCCSSC
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc---cceeeecccCCCc
Confidence            32   3456678999999999987                 3 799999999999999864321   1134567789999


Q ss_pred             EEEEEEcCCC----CEEEEEcCCCcEEEeecCcc---cccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECC-C
Q 047728          312 VTALAISPDA----AIVYCGSSDGLVNFWERELN---LSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRK-E  381 (474)
Q Consensus       312 v~~l~~~~~~----~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~-~  381 (474)
                      |.+++|+|++    .+|++++.|++|++||++..   ......+..|...+  +++++++++|++++.|+.|+||+.. .
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            9999999986    89999999999999998763   12223455666666  4556789999999999999999975 3


Q ss_pred             CceEEEEeecC
Q 047728          382 NEHICLSMLTG  392 (474)
Q Consensus       382 ~~~~~~~~~~~  392 (474)
                      ++..++..+..
T Consensus       295 g~~~~~~~~~~  305 (316)
T 3bg1_A          295 GQWVCISDVNK  305 (316)
T ss_dssp             SCEEEEEECC-
T ss_pred             CcEEEeeeccC
Confidence            34344444443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=282.38  Aligned_cols=311  Identities=15%  Similarity=0.235  Sum_probs=224.0

Q ss_pred             eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-------------cccccccCc------------cCEEEEEec--C
Q 047728          108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-------------EFSGFKSNS------------GLVKAIVIS--N  158 (474)
Q Consensus       108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-------------~~~~~~~h~------------~~V~~i~~~--~  158 (474)
                      .|.+.|.+++|+  |++||+|+.||.|+|||...             ....+.+|.            ..|.+++|+  +
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999987  88999999999999999542             356778898            889999998  3


Q ss_pred             --CEEEEEeCCCeEEEEecCCCCcceeeee-----cc---cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          159 --EKIFSGHQDGKIRVWKVSSKDASIHKRV-----GT---LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       159 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                        ..|++++.|++|++|++..+........     +.   ......+......+...............+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              5899999999999999986543210000     00   0000000000000000111111111223579999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEEcCC-cceee-------eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSD-YKCLE-------SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      +|++++|++| .|+.|++||+++ ++.+.       .+..|...|.+++|+|++  .|++|+.||.|++||++.......
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 899999999984 44444       255789999999999986  899999999999999986543110


Q ss_pred             eeeeeeeecccc------------cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee------------
Q 047728          299 HFFSQTLLKQEC------------AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA------------  354 (474)
Q Consensus       299 ~~~~~~~~~~~~------------~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~------------  354 (474)
                        ....+..+..            .|.+++|+|++++|++++. +.|++||++........+.+|...            
T Consensus       265 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          265 --HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             --TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             --eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence              1233444443            8999999999999999999 999999998733444555666421            


Q ss_pred             -----eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee------------------------------cCCccceEE
Q 047728          355 -----ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML------------------------------TGHSGPVKC  399 (474)
Q Consensus       355 -----v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~------------------------------~~h~~~v~~  399 (474)
                           .+++++++++|++|+.||.|++||+.+++...+...                              ..+...|..
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  421 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH  421 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence                 278999999999999999999999998874321110                              123457899


Q ss_pred             EEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      ++|+|++.        +||+++.++ +.+|.-
T Consensus       422 ~~~~p~~~--------~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          422 TAWHPKEN--------IIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEECSSSS--------EEEEECSSC-EEEEEC
T ss_pred             EEECCCCC--------EEEEEecce-eeeecc
Confidence            99999999        899988876 788864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-34  Score=297.58  Aligned_cols=250  Identities=21%  Similarity=0.360  Sum_probs=206.0

Q ss_pred             ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          143 GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      .+++|.+.|++++++   +++|+||+.|++|++|++..........                           ...+.+|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~---------------------------~~~~~~h  429 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVA---------------------------QRRLTGH  429 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEE---------------------------EEEEECC
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccc---------------------------cceecCC
Confidence            467899999999997   3589999999999999998754321110                           0234669


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      ...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .|++++.|++|++||.....   .
T Consensus       430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---~  506 (694)
T 3dm0_A          430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---K  506 (694)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---E
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---c
Confidence            9999999999999999999999999999999999999999999999999999999 99999999999999975321   1


Q ss_pred             eeeeeeeecccccEEEEEEcCCC--CEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcE
Q 047728          299 HFFSQTLLKQECAVTALAISPDA--AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSI  374 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i  374 (474)
                      .........|...|.+++|+|++  ..|++++.|+.|++||++..... ..+.+|...+.  ++++++++|++|+.||.|
T Consensus       507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~-~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSLCASGGKDGVV  585 (694)
T ss_dssp             EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred             eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            11222335688899999999986  68999999999999999876544 56677887775  455689999999999999


Q ss_pred             EEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ++||+.+++  ++..+. +...|.+++|+|++.        +|++++ |+.|+|||+.++.
T Consensus       586 ~iwd~~~~~--~~~~~~-~~~~v~~~~~sp~~~--------~l~~~~-~~~i~iwd~~~~~  634 (694)
T 3dm0_A          586 LLWDLAEGK--KLYSLE-ANSVIHALCFSPNRY--------WLCAAT-EHGIKIWDLESKS  634 (694)
T ss_dssp             EEEETTTTE--EEECCB-CSSCEEEEEECSSSS--------EEEEEE-TTEEEEEETTTTE
T ss_pred             EEEECCCCc--eEEEec-CCCcEEEEEEcCCCc--------EEEEEc-CCCEEEEECCCCC
Confidence            999999887  344554 456899999999987        666655 5669999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.2e-34  Score=269.50  Aligned_cols=294  Identities=13%  Similarity=0.133  Sum_probs=214.4

Q ss_pred             eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec----CCEEEEEeCCCeEE
Q 047728          104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIR  171 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~  171 (474)
                      ..+.+|++.|++++++  +++|++|+.||.|++||...      ....+.+|...|.+++|+    +++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            3467899999999986  88999999999999999552      455678899999999996    57999999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEc
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~  249 (474)
                      +||+..++.......                  .     .....+.+|...|.+++|+|+  +.+|++++.|+.|++||+
T Consensus        85 vwd~~~~~~~~~~~~------------------~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           85 LWEEDPDQEECSGRR------------------W-----NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             EEEECTTSCTTSSCS------------------E-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             EEecCCCcccccccC------------------c-----ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence            999988753210000                  0     001234459999999999999  999999999999999999


Q ss_pred             CCcceeeeee-------------ecCcceeEEEecCC---C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728          250 SDYKCLESVI-------------AHDDAVNSIVAGFD---G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV  312 (474)
Q Consensus       250 ~~~~~~~~~~-------------~~~~~v~~v~~~~~---~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  312 (474)
                      ++++.+..+.             .|...+.++.|+|+   + .+++++.++.+.+|+.....    ......+..|...|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i  217 (351)
T 3f3f_A          142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLI  217 (351)
T ss_dssp             SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCCSCE
T ss_pred             CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCCcce
Confidence            9887665543             57789999999997   5 89999999999777765432    12345667789999


Q ss_pred             EEEEEcCCC----CEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEE----EeCCCcEEEEECCCC
Q 047728          313 TALAISPDA----AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFS----GSADMSICIWRRKEN  382 (474)
Q Consensus       313 ~~l~~~~~~----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s----gs~dg~i~iwd~~~~  382 (474)
                      ++++|+|++    ++|++++.||.|++||++......... .+....  .........+..    +.....+.+|+....
T Consensus       218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (351)
T 3f3f_A          218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE-ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV  296 (351)
T ss_dssp             EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEE
T ss_pred             eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC-CcccceeccCCCcccccccccccccccceeeeecccccc
Confidence            999999998    899999999999999998764432221 111111  112222223333    333445555554443


Q ss_pred             ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      +  .+..+.+|...|++++|+|++.        +|++++.||.|++|++..+.
T Consensus       297 ~--~~~~~~~h~~~v~~~~~s~~~~--------~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          297 E--LLSEHDDHNGEVWSVSWNLTGT--------ILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             E--EEEEECTTSSCEEEEEECSSSC--------CEEEEETTSCEEEEEECTTS
T ss_pred             c--EEEEEecccccEEEEEEcCCCC--------EEEEecCCCcEEEEecCcCc
Confidence            3  5678889999999999999998        89999999999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-34  Score=270.64  Aligned_cols=250  Identities=18%  Similarity=0.255  Sum_probs=198.5

Q ss_pred             ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728          143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF  220 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  220 (474)
                      .+.+|.+.|.+++|+  +++|++|+.|++|+|||+.++.....                              ..+.+|.
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~------------------------------~~l~gH~   57 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI------------------------------ADLRGHE   57 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE------------------------------EEEECCS
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE------------------------------EEEcCCC
Confidence            456899999999998  78999999999999999986532111                              2345699


Q ss_pred             CCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEcccC
Q 047728          221 DAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       221 ~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      ..|.+++|++  ++++|++|+.|++|++||+++++  .+..+.+|...|.+++|+|+  + +|++|+.|+.|++||++..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9999999986  48999999999999999998873  56677889999999999997  5 8999999999999998754


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCC-----------------CCEEEEEcCCCcEEEeecCccc--ccceeeeeccee
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPD-----------------AAIVYCGSSDGLVNFWERELNL--SHGGVLRGHKLA  354 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------------~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~  354 (474)
                      ..   .........|...|.+++|+|+                 +++|++++.|+.|++||++...  .....+.+|...
T Consensus       138 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~  214 (316)
T 3bg1_A          138 GQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW  214 (316)
T ss_dssp             SC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred             CC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc
Confidence            32   1123445678889999999997                 4789999999999999997542  233456788888


Q ss_pred             eEEEEe--cC----CEEEEEeCCCcEEEEECCCCc--eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728          355 ILCLVT--AG----NLVFSGSADMSICIWRRKENE--HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV  426 (474)
Q Consensus       355 v~~~~~--~~----~~l~sgs~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i  426 (474)
                      |.++.+  ++    .+|++|+.|++|+|||+....  ......+..|...|.+++|+|++.        +|++++.|++|
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~--------~las~~~D~~v  286 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN--------ILAVSGGDNKV  286 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC--------CEEEEESSSCE
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC--------EEEEEcCCCeE
Confidence            876654  44    789999999999999997621  111223456889999999999998        89999999999


Q ss_pred             EEEEccC
Q 047728          427 KMWRVSE  433 (474)
Q Consensus       427 ~vw~~~~  433 (474)
                      +||+...
T Consensus       287 ~lw~~~~  293 (316)
T 3bg1_A          287 TLWKESV  293 (316)
T ss_dssp             EEEEECT
T ss_pred             EEEEECC
Confidence            9999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-33  Score=273.46  Aligned_cols=263  Identities=26%  Similarity=0.441  Sum_probs=225.5

Q ss_pred             cccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          144 FKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       144 ~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      ...|...|.++.+++++|++|+.||.|++||+.+++...                                .+.+|...|
T Consensus       129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~--------------------------------~~~~h~~~v  176 (435)
T 1p22_A          129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--------------------------------ILTGHTGSV  176 (435)
T ss_dssp             CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE--------------------------------EECCCSSCE
T ss_pred             ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE--------------------------------EEcCCCCcE
Confidence            345778899999999999999999999999998876432                                234599999


Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ  303 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  303 (474)
                      .+++|  ++++|++|+.||+|++||+.+++.+..+..|...|.+++|++ +.+++|+.||.|++||++.....   ....
T Consensus       177 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~---~~~~  250 (435)
T 1p22_A          177 LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDI---TLRR  250 (435)
T ss_dssp             EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCC---EEEE
T ss_pred             EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCc---eeee
Confidence            99999  788999999999999999999999999999999999999974 49999999999999999865432   1235


Q ss_pred             eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728          304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ...+|...|.+++|  ++++|++++.||.|++||++++... ..+.+|...+.++.++++++++|+.||.|++||+++++
T Consensus       251 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          251 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV-RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred             EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE-EEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC
Confidence            66788999999999  7889999999999999999987654 55678999999999999999999999999999999887


Q ss_pred             eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC--CcccccccCCCCCCCcccc
Q 047728          384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS--TTQQHPLEGHGVAPNSLPY  459 (474)
Q Consensus       384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~  459 (474)
                        ++..+.+|...|.+++|  ++.        +|++|+.||.|++||+..+..+...  ......+.+|...|.+++|
T Consensus       328 --~~~~~~~h~~~v~~~~~--~~~--------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  393 (435)
T 1p22_A          328 --CLRVLEGHEELVRCIRF--DNK--------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF  393 (435)
T ss_dssp             --EEEEECCCSSCEEEEEC--CSS--------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             --EEEEEeCCcCcEEEEEe--cCC--------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence              56788999999999999  566        8999999999999999876432211  1256678899999999976

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.6e-33  Score=274.04  Aligned_cols=305  Identities=19%  Similarity=0.325  Sum_probs=241.6

Q ss_pred             CCCcceeeeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec----CCEEEEEeCCC
Q 047728           96 GFSPNVLIGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS----NEKIFSGHQDG  168 (474)
Q Consensus        96 ~~~~~~~~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg  168 (474)
                      +......+..+.+|.+.|+++++. +.+|++|+.||+|++||..  +.+..+.+|...|.++++.    +.+|++++.||
T Consensus       148 d~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          148 DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN  227 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred             ECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence            445567888999999999999998 4599999999999999954  5677788999999999986    36899999999


Q ss_pred             eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728          169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR  248 (474)
Q Consensus       169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd  248 (474)
                      +|++||+.+............  .. ..........+      ....+.+|...|.++  ++++++|++++.|+.|++||
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~------~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd  296 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHD--YP-LVFHTPEENPY------FVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD  296 (464)
T ss_dssp             CEEEEECCCCCCC------CC--SS-EEESCGGGCTT------EEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred             cEEEeeCCCCcccccccccCC--cc-eEeeccCCCeE------EEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence            999999998764432111100  00 00000000000      012456688889888  56788999999999999999


Q ss_pred             cCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728          249 TSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG  327 (474)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  327 (474)
                      +.+++++..+.+|...|.+++|+|++ .+++|+.||.|++||++.+.      ....+..|...|.+++|+  +.+|+++
T Consensus       297 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------LMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             CCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------EEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            99999999999999999999999998 99999999999999997643      356677899999999997  5899999


Q ss_pred             cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE-eecCCccceEEEEEeeCC
Q 047728          328 SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLS-MLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~l~~~~~~  406 (474)
                      +.||.|++||+++..........+...+.+++++++++++|+ ||.|++||+.+++.  +. .+..|...|.+++|+ ..
T Consensus       369 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~--~~~~~~~~~~~v~~v~~~-~~  444 (464)
T 3v7d_B          369 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL--VHANILKDADQIWSVNFK-GK  444 (464)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE--EESCTTTTCSEEEEEEEE-TT
T ss_pred             eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE--EehhhccCCCcEEEEEec-CC
Confidence            999999999999876655554556677789999999999999 99999999999884  34 367789999999997 33


Q ss_pred             ccccccceEEEEEecCCCcEEEEEc
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      .        ++++++.||.+.+|-+
T Consensus       445 ~--------l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          445 T--------LVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             E--------EEEEEEETTEEEEEEE
T ss_pred             E--------EEEEEEeCCeEEEEEe
Confidence            3        6777778887666544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=274.72  Aligned_cols=282  Identities=15%  Similarity=0.172  Sum_probs=219.1

Q ss_pred             ccccCccCEEEEEec--CC-EEEEEeC---CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          143 GFKSNSGLVKAIVIS--NE-KIFSGHQ---DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~--~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      .+.+|...|.+++|+  +. .+++++.   ||.|++|++.+++.....                               .
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-------------------------------~   61 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-------------------------------E   61 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-------------------------------E
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-------------------------------e
Confidence            456799999999998  33 4456665   999999999987643221                               1


Q ss_pred             eeccCCeeEEEecCC---CCEEEEEECCCcEEEEEcCCcc-eeeeeeecCcceeEEEe------cCCC-eEEEeeCCCcE
Q 047728          217 IKHFDAISSLSMSED---QNLLYSASWDKTFKVWRTSDYK-CLESVIAHDDAVNSIVA------GFDG-LVFTGSADGTV  285 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~------~~~~-~l~~~~~dg~i  285 (474)
                      .+|...|.+++|+|+   +.+|++++.|+.|++||+.+++ .+..+..|...|.++.|      ++++ .|++++.||.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            248999999999998   6999999999999999999988 88889999999999955      5677 99999999999


Q ss_pred             EEEEcccCCCceeeeeeeeeecc----cccEEEEE----EcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQ----ECAVTALA----ISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--  355 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~----~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--  355 (474)
                      ++||++.....     ...+..+    ...+.+++    |+|++++|++++.|+.|++||+++....  ....|...+  
T Consensus       142 ~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~v~~  214 (357)
T 3i2n_A          142 KVWDPRQKDDP-----VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--WETNIKNGVCS  214 (357)
T ss_dssp             EEECTTSCSSC-----SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEE
T ss_pred             EEEeCCCCCCc-----ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee--eecCCCCceEE
Confidence            99999865421     2222222    34788988    7889999999999999999999987653  334555555  


Q ss_pred             EEEEe---cCCEEEEEeCCCcEEEEECCCCceE---EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          356 LCLVT---AGNLVFSGSADMSICIWRRKENEHI---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       356 ~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      +++++   ++++|++|+.||.|++||+++++..   ....+.+|...|++++|+|++..       +|++++.||.|++|
T Consensus       215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE-------LFLTAGGAGGLHLW  287 (357)
T ss_dssp             EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEE-------EEEEEETTSEEEEE
T ss_pred             EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCc-------EEEEEeCCCcEEEe
Confidence            45556   7899999999999999999765421   12244589999999999999863       69999999999999


Q ss_pred             EccCCCCCCCC------------CcccccccCCCCCCCccccCCCCCcCCceee-cc
Q 047728          430 RVSEQAPPLVS------------TTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ-KR  473 (474)
Q Consensus       430 ~~~~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~-~~  473 (474)
                      ++.........            ......+.+|...|.++    +|+|||++++ ++
T Consensus       288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~----~~s~~~~~l~~s~  340 (357)
T 3i2n_A          288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL----DWSPDKRGLCVCS  340 (357)
T ss_dssp             EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE----EECSSSTTEEEEE
T ss_pred             ecCCCcccccccCCCCccccccccceeeccccCCCCeeEE----EEcCCCCeEEEEe
Confidence            99876443211            12455677899999998    6778888886 44

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=261.56  Aligned_cols=268  Identities=20%  Similarity=0.289  Sum_probs=219.9

Q ss_pred             ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          139 REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      +....+.+|.+.|.+++|. +++|++++.||.|++||+.++....                                .+.
T Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~--------------------------------~~~   56 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT--------------------------------VVY   56 (313)
T ss_dssp             EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE--------------------------------EEE
T ss_pred             HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE--------------------------------Eee
Confidence            4566788999999999996 7799999999999999997754321                                234


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~  294 (474)
                      .|...|.+++|+|++++|++++.|+.|++|++...   +.+..+..|...|.++.|. ...+++++.||.|++||..   
T Consensus        57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d~~---  132 (313)
T 3odt_A           57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWKEG---  132 (313)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETT---
T ss_pred             cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEcCC---
Confidence            58999999999999999999999999999998754   5677888899999999993 3499999999999999921   


Q ss_pred             CceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCC
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSAD  371 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~d  371 (474)
                      .     .......|...+.+++|.| +++++++++.|+.|++||....  .......|...+  +++++++. +++++.|
T Consensus       133 ~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          133 S-----LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             E-----EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE--EEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred             c-----EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce--EEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence            1     3556677899999999998 9999999999999999994432  222222255555  45556666 9999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG  451 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  451 (474)
                      |.|++||+++++  .+..+.+|...|++++|+|++.         |++++.||.|++||+.++       .....+..|.
T Consensus       205 g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~---------l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~  266 (313)
T 3odt_A          205 GLIKLVDMHTGD--VLRTYEGHESFVYCIKLLPNGD---------IVSCGEDRTVRIWSKENG-------SLKQVITLPA  266 (313)
T ss_dssp             SEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSC---------EEEEETTSEEEEECTTTC-------CEEEEEECSS
T ss_pred             CeEEEEECCchh--hhhhhhcCCceEEEEEEecCCC---------EEEEecCCEEEEEECCCC-------ceeEEEeccC
Confidence            999999999887  5677889999999999999985         789999999999999887       4556677788


Q ss_pred             CCCCccccCCCCCcCCceeec
Q 047728          452 VAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       452 ~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      ..|.++    +|+|||++++.
T Consensus       267 ~~i~~~----~~~~~~~~~~~  283 (313)
T 3odt_A          267 ISIWSV----DCMSNGDIIVG  283 (313)
T ss_dssp             SCEEEE----EECTTSCEEEE
T ss_pred             ceEEEE----EEccCCCEEEE
Confidence            888888    66778887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.2e-34  Score=273.03  Aligned_cols=273  Identities=12%  Similarity=0.136  Sum_probs=211.8

Q ss_pred             ccccccCccCEEEEEec--C-CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVIS--N-EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ...+.+|...|.+++|+  + ++|++|+.||.|++||+.+++......                              ..
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------~~  115 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ------------------------------GM  115 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC------------------------------CC
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee------------------------------cC
Confidence            44567899999999998  4 689999999999999999776543221                              12


Q ss_pred             eccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeec---CcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728          218 KHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAH---DDAVNSIVAGFDG-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       218 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~  292 (474)
                      +|...|.+++|+| ++++|++++.|+.|++||+++ ..+..+..+   ...|.+++|+|++ .|++++.|+.|++||++.
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  194 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG  194 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence            4999999999999 789999999999999999986 555555544   4789999999999 999999999999999842


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccc--eeeeecceeeEE--EEe-cCCEEE
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHG--GVLRGHKLAILC--LVT-AGNLVF  366 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~--~~~-~~~~l~  366 (474)
                       .      ....+..|...|.+++|+|+++ +|++++.|+.|++||+++.....  ....+|...+.+  +++ ++++|+
T Consensus       195 -~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  267 (383)
T 3ei3_B          195 -H------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL  267 (383)
T ss_dssp             -C------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred             -C------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence             1      3556678999999999999998 99999999999999998732211  112257666654  556 789999


Q ss_pred             EEeCCCcEEEEECCCCceEEEEeecC-------Ccc----------ceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          367 SGSADMSICIWRRKENEHICLSMLTG-------HSG----------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~~~~~~~~~~~-------h~~----------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      +++.|+.|++||+++++..  ..+.+       |..          .+..++|+|++.        +  +++.|+.|++|
T Consensus       268 ~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~--------~--s~s~d~~i~iw  335 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYDWSKP--DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ--------L--LLNDKRTIDIY  335 (383)
T ss_dssp             EEESSSEEEEEETTBTTSC--SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT--------T--CTTCCCCEEEE
T ss_pred             EEcCCCcEEEEECCCCccc--cccccccccccccccceEEeccCCCCceEEEecCCcc--------c--ccCCCCeEEEE
Confidence            9999999999999877532  22222       223          344466666665        4  78899999999


Q ss_pred             EccCCCCCCCCCcccccccC--CCCCCCccccCCCCCcCCceeeccC
Q 047728          430 RVSEQAPPLVSTTQQHPLEG--HGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      |+.+++       ....+.+  |...+..+    +|+|||++|+++|
T Consensus       336 d~~~~~-------~~~~l~~~~~~~~~~~~----~~s~~g~~l~s~s  371 (383)
T 3ei3_B          336 DANSGG-------LVHQLRDPNAAGIISLN----KFSPTGDVLASGM  371 (383)
T ss_dssp             ETTTCC-------EEEEECBTTBCSCCCEE----EECTTSSEEEEEE
T ss_pred             ecCCCc-------eeeeecCCCCCceEEEE----EEecCccEEEEec
Confidence            998873       4455555  45556666    6788999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-35  Score=283.72  Aligned_cols=267  Identities=13%  Similarity=0.252  Sum_probs=205.9

Q ss_pred             EEcCCEEEEeeCCCcEEEEeC-Ccccccc-ccCccCEEEEEecC---CEEEEEeCCCeEEEEecCC---CCcceeeeecc
Q 047728          117 AAAGDLLYTGSDSKNIRVWKN-QREFSGF-KSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSS---KDASIHKRVGT  188 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~-~~~~~~~-~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~  188 (474)
                      .++++.+++++      .|+. ++.+..+ .+|.+.|++++|++   ++|++|+.||+|++||+.+   +.....     
T Consensus        36 ~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----  104 (437)
T 3gre_A           36 GPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS-----  104 (437)
T ss_dssp             CCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC-----
T ss_pred             CCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce-----
Confidence            34455555544      3773 3556667 88999999999975   5999999999999999876   321100     


Q ss_pred             cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC---Ccceeeeeee-----
Q 047728          189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS---DYKCLESVIA-----  260 (474)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~-----  260 (474)
                                               ....+|...|.+++|+|++++|++++.|+.|++||+.   +++.+..+..     
T Consensus       105 -------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~  159 (437)
T 3gre_A          105 -------------------------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK  159 (437)
T ss_dssp             -------------------------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -------------------------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence                                     0112489999999999999999999999999999994   5555554433     


Q ss_pred             -------cCcceeEEE--ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec--ccccEEEEEEcCCCCEEEEEc
Q 047728          261 -------HDDAVNSIV--AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK--QECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       261 -------~~~~v~~v~--~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~  328 (474)
                             +...+.++.  +++++ .+++++.|+.|++||++....      ...+..  |...|++++|+|++++|++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~  233 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER------LQIIENSPRHGAVSSICIDEECCVLILGT  233 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE------EEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred             EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee------eEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence                   334555555  44667 999999999999999986542      344444  788999999999999999999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeEEEE------ecCCEEEEEeCCCcEEEEECCCCceEEEEeecC----------
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAILCLV------TAGNLVFSGSADMSICIWRRKENEHICLSMLTG----------  392 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~----------  392 (474)
                      .||.|++||++.+.........|...+.++.      +++.+|++|+.||.|++||+++++.  +..+.+          
T Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~  311 (437)
T 3gre_A          234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC--QYAFINSDEQPSMEHF  311 (437)
T ss_dssp             TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE--EEEEESSSSCCCGGGG
T ss_pred             CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE--EEEEEcCCCCCcccee
Confidence            9999999999987665444446777777663      3467999999999999999998873  333332          


Q ss_pred             ----------------CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          393 ----------------HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       393 ----------------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                                      |...|++++|+ ++.        +|++|+.|+.|++||+.+++.
T Consensus       312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~--------~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          312 LPIEKGLEELNFCGIRSLNALSTISVS-NDK--------ILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             SCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE--------EEEEEGGGTEEEEEETTCGGG
T ss_pred             cccccccccceecccccCCceEEEEEC-Cce--------EEEecCCCCeEEEEECCCccc
Confidence                            66778899999 666        899999999999999988743

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=269.53  Aligned_cols=249  Identities=20%  Similarity=0.217  Sum_probs=204.7

Q ss_pred             eeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec----CCEEEEEeCCCeEE
Q 047728          102 LIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIR  171 (474)
Q Consensus       102 ~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~  171 (474)
                      ++..+.+|++.|.+++++  +++|++|+.||.|+|||..    +....+.+|...|.+++|+    +++|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            456789999999999987  8899999999999999854    3456788999999999997    67999999999999


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEc
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~  249 (474)
                      +||+.+++....                              ..+..|...|.+++|+|+  +.+|++++.|+.|++||+
T Consensus        83 iwd~~~~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~  132 (379)
T 3jrp_A           83 IWKEENGRWSQI------------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  132 (379)
T ss_dssp             EEEEETTEEEEE------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             EEEcCCCceeEe------------------------------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence            999988752211                              123348899999999998  999999999999999999


Q ss_pred             CCcc--eeeeeeecCcceeEEEecC-------------CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728          250 SDYK--CLESVIAHDDAVNSIVAGF-------------DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT  313 (474)
Q Consensus       250 ~~~~--~~~~~~~~~~~v~~v~~~~-------------~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  313 (474)
                      .+..  ....+..|...|.+++|+|             ++ .+++++.||.|++||++....  .......+..|...|.
T Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~h~~~v~  210 (379)
T 3jrp_A          133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVR  210 (379)
T ss_dssp             CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEE
T ss_pred             CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc--ceeeEEEEecccCcEe
Confidence            8874  3445678999999999999             46 899999999999999986543  2234556778999999


Q ss_pred             EEEEcCC---CCEEEEEcCCCcEEEeecCcccccc----eeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728          314 ALAISPD---AAIVYCGSSDGLVNFWERELNLSHG----GVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       314 ~l~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      +++|+|+   +.+|++++.||.|++||++......    .....|...+  +++++++++|++++.||.|++|++...
T Consensus       211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            9999999   8999999999999999998763221    1122355555  566678999999999999999999754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=267.11  Aligned_cols=290  Identities=18%  Similarity=0.248  Sum_probs=232.5

Q ss_pred             CCCcceeeeeeeeecCcEEEEEEc-----CCEEEEeeCCCcEEEEeCCc---cc-cccccCccCEEEEEec--CCEEEEE
Q 047728           96 GFSPNVLIGSLVREEGHIYSLAAA-----GDLLYTGSDSKNIRVWKNQR---EF-SGFKSNSGLVKAIVIS--NEKIFSG  164 (474)
Q Consensus        96 ~~~~~~~~~~l~~h~~~i~~~~~~-----~~~l~tgs~dg~v~vwd~~~---~~-~~~~~h~~~V~~i~~~--~~~l~s~  164 (474)
                      ...+...+..+.+|.+.|++++++     |++|++|+.||.|+|||...   .+ ..+.+|...|.+++|+  +++|+++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            345566777889999999999987     27999999999999999542   33 6778899999999998  6699999


Q ss_pred             eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe--cCCCCEEEEEECCC
Q 047728          165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM--SEDQNLLYSASWDK  242 (474)
Q Consensus       165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~dg  242 (474)
                      +.||.|++||+.+++...                                 +.+|...|.+++|  ++++.+|++++.|+
T Consensus       105 ~~dg~v~iwd~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  151 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQ---------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDK  151 (368)
T ss_dssp             ETTSEEEEEETTTTEEEE---------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTS
T ss_pred             cCCCcEEEEEcCCCCcee---------------------------------eccccCceEEEEEEeCCCCCEEEEccCCC
Confidence            999999999998875432                                 2349999999999  88999999999999


Q ss_pred             cEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728          243 TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       243 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  322 (474)
                      .|++||+++++.+..+..+. .+.++.+.++ .+++++.++.+++|+++.....    ...........+.++++.++..
T Consensus       152 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  225 (368)
T 3mmy_A          152 TLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQ  225 (368)
T ss_dssp             EEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEE----EEECCCSCSSCEEEEEEEECTT
T ss_pred             cEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccch----hhhccccccCCCceEEEcccCC
Confidence            99999999999998887654 5666766644 7888999999999999754321    1222223444566666665544


Q ss_pred             E----EEEEcCCCcEEEeecCccc--ccceeeeecce------------ee--EEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728          323 I----VYCGSSDGLVNFWERELNL--SHGGVLRGHKL------------AI--LCLVTAGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       323 ~----l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~------------~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      .    +++++.|+.|++||++...  .....+..|..            .+  +++++++++|++|+.||.|++||+.++
T Consensus       226 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          226 NKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             SCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence            3    9999999999999998763  22344455543            34  556678999999999999999999988


Q ss_pred             ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +  ++..+.+|..+|++++|+|++.        +|++++.|+..+.|++...
T Consensus       306 ~--~~~~~~~~~~~v~~~~~s~~g~--------~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          306 T--KLKTSEQLDQPISACCFNHNGN--------IFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             E--EEEECCCCSSCEEEEEECTTSS--------CEEEEECCCSTTCGGGCCT
T ss_pred             c--EEEEecCCCCCceEEEECCCCC--------eEEEEecccccccccccCC
Confidence            7  5678889999999999999999        8999999987777776544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-33  Score=267.77  Aligned_cols=247  Identities=11%  Similarity=0.096  Sum_probs=203.9

Q ss_pred             cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      +..|...|.+++|+  +++|++++.|+.|++||+.+++....                              ..+.+|..
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~------------------------------~~~~~h~~   53 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV------------------------------HELKEHNG   53 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE------------------------------EEEECCSS
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee------------------------------eeecCCCC
Confidence            45589999999998  66999999999999999987642111                              13345999


Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee--eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV--IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      .|.+++|+|++++|++++.|+.|++||+.+++....+  ..|...|.+++|+|++ .|++++.|+.|++||++....  .
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~  131 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--W  131 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--E
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--c
Confidence            9999999999999999999999999999888755443  5688999999999999 999999999999999986542  1


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc-----------------ccccceeeeecceeeEE--EE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL-----------------NLSHGGVLRGHKLAILC--LV  359 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~-----------------~~~~~~~~~~~~~~v~~--~~  359 (474)
                      .........|...|.+++|+|++++|++++.|+.|++||++.                 .......+..|...+.+  ++
T Consensus       132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (372)
T 1k8k_C          132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS  211 (372)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred             eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence            112233456788999999999999999999999999999642                 11222344466666654  55


Q ss_pred             ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          360 TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       360 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +++++|++++.|+.|++||+++++  ++..+..|..+|.+++|+|++.        +|++| .|+.|++|++..
T Consensus       212 ~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~--------~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          212 ANGSRVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS--------LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSSSEEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE--------EEEEE-TTSSCEEEEEET
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCc--eeEEEccCCCCeEEEEEecCCC--------EEEEE-eCCeEEEEEccC
Confidence            689999999999999999999887  5677889999999999999998        78777 899999999987

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-33  Score=297.18  Aligned_cols=271  Identities=21%  Similarity=0.286  Sum_probs=232.1

Q ss_pred             cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ....+.+|.+.|.+++|+  +.+|++++.||.|++||+.+++...                                .+.
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------------------~~~   52 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------------------SIQ   52 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--------------------------------EEe
Confidence            345678999999999998  6799999999999999998875432                                234


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      +|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .|++++.||.|++||++.... 
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-  131 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-  131 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-
Confidence            599999999999999999999999999999999999999999999999999999999 899999999999999986532 


Q ss_pred             eeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecce--eeEEEEe--cCCEEEEEeCC
Q 047728          297 TKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL--AILCLVT--AGNLVFSGSAD  371 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~sgs~d  371 (474)
                          .......|...|.+++|+| ++..|++++.||.|++||+............+..  ..+++++  ++.+|++|+.|
T Consensus       132 ----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          132 ----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             ----EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred             ----EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence                4556778899999999999 8899999999999999999877665544444434  4466666  89999999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG  451 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  451 (474)
                      |.|++||+.+++  .+..+.+|...|.+++|+|++.        +|++++.||.|++|++.++       .....+..|.
T Consensus       208 g~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~dg~v~vwd~~~~-------~~~~~~~~~~  270 (814)
T 3mkq_A          208 LTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP--------IIISGSEDGTLKIWNSSTY-------KVEKTLNVGL  270 (814)
T ss_dssp             SEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS--------EEEEEETTSCEEEEETTTC-------SEEEEECCSS
T ss_pred             CEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC--------EEEEEeCCCeEEEEECCCC-------cEEEEeecCC
Confidence            999999999887  5677889999999999999999        9999999999999999876       4455666777


Q ss_pred             CCCCccccCCCCCcCCc
Q 047728          452 VAPNSLPYAPSFSSQGR  468 (474)
Q Consensus       452 ~~v~~l~~~p~~s~Dg~  468 (474)
                      ..+.++    +|+|||+
T Consensus       271 ~~v~~~----~~~~~~~  283 (814)
T 3mkq_A          271 ERSWCI----ATHPTGR  283 (814)
T ss_dssp             SSEEEE----EECTTCG
T ss_pred             CcEEEE----EEccCCC
Confidence            777777    4455554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.7e-33  Score=269.44  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=218.6

Q ss_pred             EEEEcCCE---EEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcce
Q 047728          115 SLAAAGDL---LYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       115 ~~~~~~~~---l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~  182 (474)
                      .++++.++   +++|+.||.|+||+..+      .+..+.+|.+.|.+++|+   +++|++|+.||+|++|++..+....
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~  118 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL  118 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence            35666553   44578899999999643      455678999999999996   5699999999999999998874321


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCcceeeee--e
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDYKCLESV--I  259 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~  259 (474)
                      ...                         .....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+  .
T Consensus       119 ~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  173 (402)
T 2aq5_A          119 PLR-------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD  173 (402)
T ss_dssp             CBC-------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT
T ss_pred             ccC-------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC
Confidence            100                         0113456699999999999997 69999999999999999999999998  7


Q ss_pred             ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-eccccc-EEEEEEcCCCCEEEEE---cCCCcE
Q 047728          260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LKQECA-VTALAISPDAAIVYCG---SSDGLV  333 (474)
Q Consensus       260 ~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~~~---~~dg~i  333 (474)
                      .|...|.+++|+|++ .|++++.||.|++||++....      ...+ ..|... +.+++|+|++.+|++|   +.|+.|
T Consensus       174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i  247 (402)
T 2aq5_A          174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV------VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV  247 (402)
T ss_dssp             TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE------EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce------eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE
Confidence            899999999999999 999999999999999986432      3333 456554 8999999999999999   899999


Q ss_pred             EEeecCcccccceeee-ecceee--EEEEecCCEEE-EEeCCCcEEEEECCCCce--EEEEeecCCccceEEEEEeeCCc
Q 047728          334 NFWERELNLSHGGVLR-GHKLAI--LCLVTAGNLVF-SGSADMSICIWRRKENEH--ICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~~-~~~~~v--~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      ++||+++......... .+...+  +++++++++|+ +|+.|+.|++||+.+++.  ..+..+. |..+|.+++|+|++.
T Consensus       248 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~  326 (402)
T 2aq5_A          248 ALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRG  326 (402)
T ss_dssp             EEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGG
T ss_pred             EEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccc
Confidence            9999988655333322 344444  56677888886 455799999999998773  2223333 678999999999988


Q ss_pred             cccccceEEEEEecCCCcEEEEEccCC
Q 047728          408 SLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                              ++++  .|+.+++|++.++
T Consensus       327 --------~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          327 --------LEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             --------SCGG--GTEEEEEEEEETT
T ss_pred             --------ccee--cceeEEEEEcCCC
Confidence                    5554  5679999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-34  Score=276.15  Aligned_cols=264  Identities=13%  Similarity=0.057  Sum_probs=203.7

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      +..|.+++++  |+++|+++.|++|+  | .+....+.+|...|.+++|+++-     .+   +.|++.+++......  
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d-~~~~~~l~gh~~~v~~V~FsPdg-----~~---~~~~~~~~~~~~~~~--   81 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--Q-PKYAKDINCNSKNLFHVKEFPLE-----FE---NKLDFELAQQNGLLN--   81 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--E-ECCCSCCSSBGGGTEEEEEECCC-----CC---CTTTTSCCCSSCSST--
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--c-ccccceecCCCccEEEEEECCCC-----Cc---ceEEEEeCCCceEee--
Confidence            4556666655  99999999999999  6 34445558999999999998543     34   445554433211110  


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc----
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD----  263 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----  263 (474)
                                                   ..|...|.+++|+|+|.+|++++.||.|++||.+.  ++..+. |..    
T Consensus        82 -----------------------------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           82 -----------------------------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             -----------------------------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             -----------------------------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence                                         12678899999999999999999999999999644  666666 665    


Q ss_pred             -ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee-eeeeeee----ecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728          264 -AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK-HFFSQTL----LKQECAVTALAISPDAAIVYCGSSDGLVNFW  336 (474)
Q Consensus       264 -~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~  336 (474)
                       .|.+++|+||| .|++|+.||+|++||+..+..... ......+    .+|...|.+++|+|++  +++++.|+.|++|
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlW  207 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSM  207 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEE
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEE
Confidence             49999999999 999999999999999986432111 0112332    5678899999999999  8888999999999


Q ss_pred             ecCccccc--ceee-eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE--eeCCccccc
Q 047728          337 ERELNLSH--GGVL-RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV--EKDDESLSR  411 (474)
Q Consensus       337 d~~~~~~~--~~~~-~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~  411 (474)
                      |+..+...  ...+ .+|...|.++.+.++.|++++ +++|++||+.+++..  ....+|.+.|..++|  +|++.    
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~--~~~~gh~~~V~~va~~~s~d~~----  280 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSIS--SLKTGSLENFHIIPLNHEKEST----  280 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEE--EEECSCCSCCCEEEETTCSSCE----
T ss_pred             ECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEE--EEEcCCCceEEEEEeeeCCCCC----
Confidence            99877632  1234 477777766666578999997 699999999988732  223379999999999  99998    


Q ss_pred             cceEEEEEecCCCcEEEEEcc
Q 047728          412 EKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       412 ~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                          .|++++.||+ ++|.+.
T Consensus       281 ----~La~a~edG~-klw~~d  296 (588)
T 2j04_A          281 ----ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ----EEEECSSCEE-EEEESS
T ss_pred             ----EEEEEcCCCC-EEEeec
Confidence                8999999999 999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.4e-33  Score=263.80  Aligned_cols=277  Identities=18%  Similarity=0.205  Sum_probs=222.3

Q ss_pred             ccccccccCccCEEEEEecC-----CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecc
Q 047728          139 REFSGFKSNSGLVKAIVISN-----EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRN  213 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (474)
                      +.+..+.+|.+.|.+++|++     ++|++|+.||.|++||+.+......                              
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------   79 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------------------   79 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE------------------------------
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE------------------------------
Confidence            45677889999999999983     5899999999999999987332211                              


Q ss_pred             ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEe--cCCC-eEEEeeCCCcEEEEEc
Q 047728          214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA--GFDG-LVFTGSADGTVKVWRR  290 (474)
Q Consensus       214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~--~~~~-~l~~~~~dg~i~iwd~  290 (474)
                      ..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+. +..|...|.+++|  ++++ .|++++.||.|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            1234599999999999999999999999999999999988766 5679999999999  8888 8999999999999999


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee---eeecceeeEEEEecCCE---
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV---LRGHKLAILCLVTAGNL---  364 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~---  364 (474)
                      +....      ...+.. ...+.++.+.  ...+++++.++.+.+|+++........   ...+...+.++.++...   
T Consensus       159 ~~~~~------~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          159 RSSNP------MMVLQL-PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             SCSSC------SEEEEC-SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred             CCCcE------EEEEec-CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence            86543      222222 3356666665  458888999999999999876433222   22455666777766544   


Q ss_pred             -EEEEeCCCcEEEEECCCCce-EEEEeecCCcc------------ceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          365 -VFSGSADMSICIWRRKENEH-ICLSMLTGHSG------------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       365 -l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~------------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                       +++++.||.|++||++.... ..+..+.+|..            +|++++|+|++.        +|++++.||.|++||
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--------~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG--------TLATVGSDGRFSFWD  301 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC--------CEEEEETTSCEEEEE
T ss_pred             eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC--------EEEEEccCCeEEEEE
Confidence             99999999999999987632 23556777776            799999999998        899999999999999


Q ss_pred             ccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          431 VSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      +.++       .....+.+|...|.++    +|+|||++|+++|
T Consensus       302 ~~~~-------~~~~~~~~~~~~v~~~----~~s~~g~~l~~~s  334 (368)
T 3mmy_A          302 KDAR-------TKLKTSEQLDQPISAC----CFNHNGNIFAYAS  334 (368)
T ss_dssp             TTTT-------EEEEECCCCSSCEEEE----EECTTSSCEEEEE
T ss_pred             CCCC-------cEEEEecCCCCCceEE----EECCCCCeEEEEe
Confidence            9876       5566778899999999    7788999988764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4e-33  Score=272.06  Aligned_cols=276  Identities=14%  Similarity=0.131  Sum_probs=208.8

Q ss_pred             cccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          142 SGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      .....|...|++|+|+   +++|++|+.||+|+|||+..++.....                              .+.+
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------------------------------~~~g  162 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------------------------------KGIG  162 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE------------------------------CCCS
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE------------------------------EccC
Confidence            3456788899999997   458999999999999999877643221                              1245


Q ss_pred             ccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728          219 HFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       219 h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~  294 (474)
                      |.+.|++|+|+| ++++|++|+.|++|++||+++.........  +...+.+++|++++ +|++|+.||.|++||++.. 
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-  241 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-  241 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-
Confidence            999999999998 789999999999999999987554333322  34467899999999 9999999999999998632 


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccce--eeeecceeeEEE--EecCCEEEEEe
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGG--VLRGHKLAILCL--VTAGNLVFSGS  369 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~~v~~~--~~~~~~l~sgs  369 (474)
                            ....+..|...|.+++|+|++. +|++++.|+.|++||++.......  ...+|...|.++  ++++++|++|+
T Consensus       242 ------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          242 ------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             ------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             ------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence                  2456678999999999999875 788999999999999987654432  234677777654  56899999999


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCcc------ceEEEEEeeCCccccccceEEEEEe------------cCCCcEEEEEc
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSG------PVKCLAVEKDDESLSREKRWILYSG------------SLDKSVKMWRV  431 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~~~~~~~~~~l~s~------------s~Dg~i~vw~~  431 (474)
                      .||.|+|||+.+++.  ...+..|..      .+..+.|+|++.        +++++            ..++.|++||+
T Consensus       316 ~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~i~iwd~  385 (435)
T 4e54_B          316 QKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYN--------LIVVGRYPDPNFKSCTPYELRTIDVFDG  385 (435)
T ss_dssp             SSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSS--------CEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred             CCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCC--------EEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence            999999999998763  333433332      233456666665        34333            34568999999


Q ss_pred             cCCCCCCCCCccccc-ccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          432 SEQAPPLVSTTQQHP-LEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       432 ~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      .++.       .... ..+|...|.++.   +|+|||++|++++
T Consensus       386 ~~g~-------~~~~l~~~~~~~v~s~~---~fspdg~~lasg~  419 (435)
T 4e54_B          386 NSGK-------MMCQLYDPESSGISSLN---EFNPMGDTLASAM  419 (435)
T ss_dssp             SSCC-------EEEEECCSSCCCCCCEE---EECTTSSCEEEEC
T ss_pred             CCCc-------EEEEEeCCCCCcEEEEE---EECCCCCEEEEEc
Confidence            8873       2233 346777777763   4788999998864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-32  Score=265.57  Aligned_cols=267  Identities=18%  Similarity=0.269  Sum_probs=219.1

Q ss_pred             CEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728          150 LVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS  229 (474)
Q Consensus       150 ~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  229 (474)
                      .+.++.|+++.+++++.||.|++|++.+++......                               ..|...|.+++|+
T Consensus        95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~-------------------------------~~~~~~v~~v~~s  143 (401)
T 4aez_A           95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE-------------------------------TDESTYVASVKWS  143 (401)
T ss_dssp             TCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE-------------------------------CCTTCCEEEEEEC
T ss_pred             eEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee-------------------------------cCCCCCEEEEEEC
Confidence            466788888889999999999999999876543221                               1278899999999


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc
Q 047728          230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE  309 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (474)
                      |++++|++|+.||.|++||+.+++.+..+..|...|.++.|.+ ..+++++.||.|++||++....     ....+..|.
T Consensus       144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~  217 (401)
T 4aez_A          144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANH-----QIGTLQGHS  217 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSC-----EEEEEECCS
T ss_pred             CCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcc-----eeeEEcCCC
Confidence            9999999999999999999999999999999999999999953 3999999999999999985443     356677899


Q ss_pred             ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecC-CEEEEEe--CCCcEEEEECCCCce
Q 047728          310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAG-NLVFSGS--ADMSICIWRRKENEH  384 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~-~~l~sgs--~dg~i~iwd~~~~~~  384 (474)
                      ..|.+++|+|++++|++++.|+.|++||+++.... ..+..|...+.+  +++++ .++++|+  .|+.|++||+.+++.
T Consensus       218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK-FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE-EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc-EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence            99999999999999999999999999999986554 344567666654  45544 5677765  799999999998873


Q ss_pred             EEEEeecCCccceEEEEEeeCCccccccceEEEEE--ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCC
Q 047728          385 ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS--GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS  462 (474)
Q Consensus       385 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s--~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~  462 (474)
                        +..+. +...|.+++|+|++.        +|++  |+.||.|++|++.++..     .....+.+|...|.++    +
T Consensus       297 --~~~~~-~~~~v~~~~~s~~~~--------~l~~~~g~~dg~i~v~~~~~~~~-----~~~~~~~~h~~~v~~~----~  356 (401)
T 4aez_A          297 --VNTVD-AGSQVTSLIWSPHSK--------EIMSTHGFPDNNLSIWSYSSSGL-----TKQVDIPAHDTRVLYS----A  356 (401)
T ss_dssp             --EEEEE-CSSCEEEEEECSSSS--------EEEEEECTTTCEEEEEEEETTEE-----EEEEEEECCSSCCCEE----E
T ss_pred             --EEEEe-CCCcEEEEEECCCCC--------eEEEEeecCCCcEEEEecCCccc-----eeEEEecCCCCCEEEE----E
Confidence              44444 667899999999998        7777  55899999999987532     2333467899999999    6


Q ss_pred             CCcCCceeeccC
Q 047728          463 FSSQGRICQKRS  474 (474)
Q Consensus       463 ~s~Dg~~l~~~s  474 (474)
                      |+|||+++++++
T Consensus       357 ~s~dg~~l~s~~  368 (401)
T 4aez_A          357 LSPDGRILSTAA  368 (401)
T ss_dssp             ECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEe
Confidence            677888887754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=263.01  Aligned_cols=253  Identities=17%  Similarity=0.258  Sum_probs=208.1

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      +.+..+.+|.+.|.+++|+  +++|++|+.||.|++|++........                              ..+
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------~~~   51 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI------------------------------DTL   51 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE------------------------------EEE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee------------------------------eEe
Confidence            3456788999999999998  67999999999999999975432211                              133


Q ss_pred             eeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEE
Q 047728          217 IKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWR  289 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd  289 (474)
                      .+|...|++++|+++  +++|++++.|+.|++||+.+++  .+..+..|...|.+++|+|+  + .+++++.|+.|++||
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d  131 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  131 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence            459999999999976  8999999999999999999987  77778889999999999998  6 999999999999999


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcC-------------CCCEEEEEcCCCcEEEeecCcccc---cceeeeecce
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISP-------------DAAIVYCGSSDGLVNFWERELNLS---HGGVLRGHKL  353 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~  353 (474)
                      ++.....    .......|...|.+++|+|             ++.+|++++.|+.|++||++....   ....+.+|..
T Consensus       132 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~  207 (379)
T 3jrp_A          132 FKENGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  207 (379)
T ss_dssp             CCTTSCC----CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             cCCCCce----eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence            9865332    2335567889999999999             699999999999999999986643   2234556777


Q ss_pred             eeEE--EEec---CCEEEEEeCCCcEEEEECCCCce---EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728          354 AILC--LVTA---GNLVFSGSADMSICIWRRKENEH---ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS  425 (474)
Q Consensus       354 ~v~~--~~~~---~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~  425 (474)
                      .+.+  ++++   +++|++++.||.|++||+..+..   ..+.....|...|++++|+|++.        +|++++.||.
T Consensus       208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~l~~~~~dg~  279 (379)
T 3jrp_A          208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN--------VLALSGGDNK  279 (379)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC--------CEEEEESSSS
T ss_pred             cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC--------EEEEecCCCc
Confidence            6655  4566   88999999999999999987642   22333445889999999999999        8999999999


Q ss_pred             EEEEEccC
Q 047728          426 VKMWRVSE  433 (474)
Q Consensus       426 i~vw~~~~  433 (474)
                      |++|++..
T Consensus       280 i~iw~~~~  287 (379)
T 3jrp_A          280 VTLWKENL  287 (379)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeCCC
Confidence            99999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.1e-33  Score=262.72  Aligned_cols=276  Identities=12%  Similarity=0.143  Sum_probs=219.7

Q ss_pred             ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728          143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF  220 (474)
Q Consensus       143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  220 (474)
                      ...+|.+.|.+++|+  +++|++++.||.|++|++..+......                             ..+.+|.
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~   56 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----------------------------LQSLRYK   56 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----------------------------EEEEECS
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----------------------------eeeeecC
Confidence            345799999999998  679999999999999999877521111                             1223599


Q ss_pred             CCeeEEEecCCCC-EEEEEECCCcEEEEEc-CCcceeeeeee--cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc
Q 047728          221 DAISSLSMSEDQN-LLYSASWDKTFKVWRT-SDYKCLESVIA--HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       221 ~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~-~~~~~~~~~~~--~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      ..|.+++|+|+++ +|++++.|+.|++||+ .+++. ..+..  |...|.+++|+|...+++++.|+.|++||++.....
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~  135 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence            9999999999999 9999999999999999 77654 67778  999999999999339999999999999999851110


Q ss_pred             ee---eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc-cccc-ceeeeecceee--EEEEe-cCCEEEEE
Q 047728          297 TK---HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL-NLSH-GGVLRGHKLAI--LCLVT-AGNLVFSG  368 (474)
Q Consensus       297 ~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~-~~~~~~~~~~v--~~~~~-~~~~l~sg  368 (474)
                      ..   ......+ .+...|.+++|+|++  +++++.|+.|++||++. .... ......|...+  +++++ ++++++++
T Consensus       136 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          136 VIAVKNLNSNNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             CEEEEESCSSSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             cccccCCeeeEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence            00   0012222 378899999999987  88999999999999987 4432 22333455455  55667 88999999


Q ss_pred             eCCCcEEEEECCCC------ceEEEEeecCCcc---------ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          369 SADMSICIWRRKEN------EHICLSMLTGHSG---------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       369 s~dg~i~iwd~~~~------~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +.||.|++|+++..      +  ....+..|..         .|.+++|+|++.        +|++++.||.|++||+.+
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--------FLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTC--------CEEEEETTSCEEEEETTT
T ss_pred             ecCCcEEEEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCC--------EEEEecCCceEEEEcCcc
Confidence            99999999999876      4  3456666755         999999999998        899999999999999988


Q ss_pred             CCCCCCCCcccccccCC-CCCCCccccCCCCCcCCceeeccC
Q 047728          434 QAPPLVSTTQQHPLEGH-GVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       434 ~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      +       .....+.+| ...|.+++      |||++++++|
T Consensus       283 ~-------~~~~~~~~~h~~~v~~~~------~~~~~l~s~s  311 (342)
T 1yfq_A          283 R-------KKIKNFAKFNEDSVVKIA------CSDNILCLAT  311 (342)
T ss_dssp             T-------EEEEECCCCSSSEEEEEE------ECSSEEEEEE
T ss_pred             H-------hHhhhhhcccCCCceEec------CCCCeEEEEe
Confidence            7       455667787 88898884      8999988764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-32  Score=264.30  Aligned_cols=266  Identities=21%  Similarity=0.292  Sum_probs=216.2

Q ss_pred             CEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          150 LVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       150 ~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      .++.|+|+ ++.|++ +.|++|+|||+.+++.......                              .+|...|++|+|
T Consensus       107 y~~~l~wS~~n~lAv-gld~tV~lWd~~tg~~~~~~~~------------------------------~~~~~~V~sv~f  155 (420)
T 4gga_A          107 YLNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQM------------------------------EQPGEYISSVAW  155 (420)
T ss_dssp             TCBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEEC------------------------------CSTTCCEEEEEE
T ss_pred             cceeEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEEe------------------------------cCCCCcEEEEEE
Confidence            45678998 455555 5599999999999876543322                              238889999999


Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ  308 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  308 (474)
                      +|++++|++|+.|++|++||+++++++..+.+|...+.++.+++. .+++|+.|+.+++||.+....     ....+..|
T Consensus       156 spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~-----~~~~~~~h  229 (420)
T 4gga_A          156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEH-----HVATLSGH  229 (420)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSC-----EEEEEECC
T ss_pred             CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccce-----eeEEeccc
Confidence            999999999999999999999999999999999999999988643 899999999999999876544     45667889


Q ss_pred             cccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc---ceeeeecceeeEEEEe--c-CCEEEEE--eCCCcEEEEECC
Q 047728          309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH---GGVLRGHKLAILCLVT--A-GNLVFSG--SADMSICIWRRK  380 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~--~-~~~l~sg--s~dg~i~iwd~~  380 (474)
                      ...+..+.++|++.++++++.|+.+++|+...+...   ......|...|.++.+  . ..+++++  +.|+.|++||+.
T Consensus       230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~  309 (420)
T 4gga_A          230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  309 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred             ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence            999999999999999999999999999999776432   2345567777766554  3 5666654  579999999999


Q ss_pred             CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE--ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728          381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS--GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP  458 (474)
Q Consensus       381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s--~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  458 (474)
                      +++  +...+.. ...+.++.|++++.        .+++  |+.|+.|+|||+.++       .+...+.+|...|.++ 
T Consensus       310 t~~--~~~~~~~-~~~v~~~~~~~~~~--------~lv~~sg~~d~~I~iwd~~~~-------~~v~~l~gH~~~V~~l-  370 (420)
T 4gga_A          310 SGA--CLSAVDA-HSQVCSILWSPHYK--------ELISGHGFAQNQLVIWKYPTM-------AKVAELKGHTSRVLSL-  370 (420)
T ss_dssp             TTE--EEEEEEC-SSCEEEEEEETTTT--------EEEEEECTTTCCEEEEETTTC-------CEEEEECCCSSCEEEE-
T ss_pred             ccc--cceeecc-ccceeeeeecCCCC--------eEEEEEecCCCEEEEEECCCC-------cEEEEEcCCCCCEEEE-
Confidence            987  3445554 45789999999988        5554  448999999999887       5667789999999999 


Q ss_pred             cCCCCCcCCceeeccC
Q 047728          459 YAPSFSSQGRICQKRS  474 (474)
Q Consensus       459 ~~p~~s~Dg~~l~~~s  474 (474)
                         +|||||++|+++|
T Consensus       371 ---~~spdg~~l~S~s  383 (420)
T 4gga_A          371 ---TMSPDGATVASAA  383 (420)
T ss_dssp             ---EECTTSSCEEEEE
T ss_pred             ---EEcCCCCEEEEEe
Confidence               6788999998864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.9e-33  Score=270.11  Aligned_cols=257  Identities=15%  Similarity=0.263  Sum_probs=193.9

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc---
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF---  220 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---  220 (474)
                      .+.+.|.+++|+  +++|++|+.||.|+||++.+++........                .+     .....+.+|.   
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~----------------~~-----~~~~~~~~h~~~~   84 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG----------------EY-----NVYSTFQSHEPEF   84 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC----------------CE-----EEEEEEECCCCEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc----------------ce-----eEecccccccccc
Confidence            468899999998  679999999999999999876531100000                00     0012344576   


Q ss_pred             ---------CCeeEEEecCCC--CEEEEEECCCcEEEEEcCCccee----------------------------------
Q 047728          221 ---------DAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKCL----------------------------------  255 (474)
Q Consensus       221 ---------~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~----------------------------------  255 (474)
                               ..|++++|+|++  .+|++++.|++|++||+.+++..                                  
T Consensus        85 ~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  164 (447)
T 3dw8_B           85 DYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV  164 (447)
T ss_dssp             EGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred             cccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence                     889999999988  79999999999999999764432                                  


Q ss_pred             -----ee-eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee--eeeeeecccccEEEEEEcCCC-CEEE
Q 047728          256 -----ES-VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF--FSQTLLKQECAVTALAISPDA-AIVY  325 (474)
Q Consensus       256 -----~~-~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~-~~l~  325 (474)
                           .. ..+|...|.+++|+|++ .|++| .|+.|++||++.........  ....+..|...|.+++|+|++ ++|+
T Consensus       165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  243 (447)
T 3dw8_B          165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV  243 (447)
T ss_dssp             EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred             eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence                 12 35799999999999999 78887 89999999997432211000  011356788999999999998 9999


Q ss_pred             EEcCCCcEEEeecCccccc---ceeeeecce------------ee--EEEEecCCEEEEEeCCCcEEEEECCC-CceEEE
Q 047728          326 CGSSDGLVNFWERELNLSH---GGVLRGHKL------------AI--LCLVTAGNLVFSGSADMSICIWRRKE-NEHICL  387 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~---~~~~~~~~~------------~v--~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~  387 (474)
                      +++.||.|++||+++....   ...+..|..            .+  +++++++++|++++. +.|++||++. ++  ++
T Consensus       244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~--~~  320 (447)
T 3dw8_B          244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR--PV  320 (447)
T ss_dssp             EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS--CS
T ss_pred             EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc--cc
Confidence            9999999999999887642   345555543            44  556678999999999 9999999986 55  35


Q ss_pred             EeecCCccc---------------eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          388 SMLTGHSGP---------------VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       388 ~~~~~h~~~---------------v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ..+.+|...               +..++|+|++.        +|++|+.||.|++||+.++.
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~--------~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS--------VVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS--------EEEEECSTTEEEEEETTTCC
T ss_pred             ceeeccccccccccccccccccccceEEEECCCCC--------EEEEeccCCEEEEEEcCCCc
Confidence            667777642               33499999999        89999999999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-34  Score=271.70  Aligned_cols=246  Identities=11%  Similarity=0.096  Sum_probs=191.4

Q ss_pred             cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      +..+.+.|.+++|+  +++|++++.|+.|++|++.++....                              ...+.+|..
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~------------------------------~~~~~~h~~   56 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH------------------------------ARTFSDHDK   56 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE------------------------------CCCBCCCSS
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE------------------------------EEEEecCCc
Confidence            34567789999998  6799999999999999998762111                              023455999


Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      .|.+++|+|++++|++++.|++|++||+.+++   ....+..|...|.+++|+|++ .|++++.|+.|++||++..... 
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-
Confidence            99999999999999999999999999999877   667778899999999999998 8999999999999999865421 


Q ss_pred             eeeeeeeeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-----------------ccceeeeecceeeE--E
Q 047728          298 KHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-----------------SHGGVLRGHKLAIL--C  357 (474)
Q Consensus       298 ~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------------~~~~~~~~~~~~v~--~  357 (474)
                        .....+.. |...|.+++|+|++++|++++.|+.|++||++...                 .....+ +|...+.  +
T Consensus       136 --~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          136 --WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             --CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             --eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence              11334445 89999999999999999999999999999985321                 111222 6766665  4


Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCce--EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          358 LVTAGNLVFSGSADMSICIWRRKENEH--ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       358 ~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +++++++|++++.||.|++||+.+++.  ..+..+.+|..+|.+++|+|++.        +|++++.|+.+ +|+..
T Consensus       213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA--------IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE--------EEEEESSSSEE-EECCC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC--------EEEEEcCCcEE-EEEeC
Confidence            566899999999999999999998874  12567889999999999999998        89998876655 77665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-31  Score=248.54  Aligned_cols=268  Identities=19%  Similarity=0.264  Sum_probs=212.8

Q ss_pred             EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC
Q 047728          151 VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE  230 (474)
Q Consensus       151 V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~  230 (474)
                      +++|+|+.+.+++.+.|++|+|||+.+++.......                              .+|...|++++|+|
T Consensus        28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~------------------------------~~~~~~V~~v~~~~   77 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM------------------------------EQPGEYISSVAWIK   77 (318)
T ss_dssp             CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC------------------------------CSTTCCEEEEEECT
T ss_pred             ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe------------------------------cCCCCeEEEEEECC
Confidence            467899844344555699999999999876543322                              23888999999999


Q ss_pred             CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC  310 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (474)
                      ++++|++|+.|++|++||+++++++..+.+|...+.++.+.+. .+++++.++.+++|+......     .......|..
T Consensus        78 ~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  151 (318)
T 4ggc_A           78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQ  151 (318)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSC-----EEEEEECCSS
T ss_pred             CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC-EEEEEecCCceEeeecCCCce-----eEEEEcCccC
Confidence            9999999999999999999999999999999998888776533 899999999999999876544     4566778999


Q ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc---eeeeecceeeEEEEe--c-CCEE--EEEeCCCcEEEEECCCC
Q 047728          311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG---GVLRGHKLAILCLVT--A-GNLV--FSGSADMSICIWRRKEN  382 (474)
Q Consensus       311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~~v~~~~~--~-~~~l--~sgs~dg~i~iwd~~~~  382 (474)
                      .+..+.+.+++++|++++.|+.|++||++++....   .....+...+.++..  . ...+  ++++.++.|++||....
T Consensus       152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred             ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence            99999999999999999999999999998765332   233345555555543  3 3333  46678899999999887


Q ss_pred             ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCC
Q 047728          383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS  462 (474)
Q Consensus       383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~  462 (474)
                      ...   ....+...+..+.|++++...      ++++|+.|+.|+|||+.++       .+...+.+|...|+++    +
T Consensus       232 ~~~---~~~~~~~~v~~~~~~~~~~~~------~~~sg~~d~~i~iwd~~~~-------~~~~~l~gH~~~V~~l----~  291 (318)
T 4ggc_A          232 ACL---SAVDAHSQVCSILWSPHYKEL------ISGHGFAQNQLVIWKYPTM-------AKVAELKGHTSRVLSL----T  291 (318)
T ss_dssp             CEE---EEEECSSCEEEEEEETTTTEE------EEEECTTTCCEEEEETTTC-------CEEEEECCCSSCEEEE----E
T ss_pred             ccc---ccccceeeeeeeeecccccce------EEEEEcCCCEEEEEECCCC-------cEEEEEcCCCCCEEEE----E
Confidence            733   334577789999999998831      2334558999999999887       5667789999999999    6


Q ss_pred             CCcCCceeeccC
Q 047728          463 FSSQGRICQKRS  474 (474)
Q Consensus       463 ~s~Dg~~l~~~s  474 (474)
                      |+|||++|+++|
T Consensus       292 ~spdg~~l~S~s  303 (318)
T 4ggc_A          292 MSPDGATVASAA  303 (318)
T ss_dssp             ECTTSSCEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            778999998864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.2e-32  Score=262.87  Aligned_cols=270  Identities=17%  Similarity=0.212  Sum_probs=212.1

Q ss_pred             EEEEecCCE---EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          152 KAIVISNEK---IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       152 ~~i~~~~~~---l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      ..++++++.   +++++.||.|+||++.......                            .....+.+|...|++++|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~----------------------------~~~~~~~~h~~~V~~~~~   89 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD----------------------------KNVPLVCGHTAPVLDIAW   89 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC----------------------------TTCCCBCCCSSCEEEEEE
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC----------------------------CCCceEecCCCCEEEEEe
Confidence            346677554   3357899999999996642210                            001234569999999999


Q ss_pred             cC-CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728          229 SE-DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       229 ~~-~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      +| ++++|++|+.||.|++||+.++       +.+..+.+|...|.+++|+|++  .|++++.|+.|++||++...    
T Consensus        90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----  165 (402)
T 2aq5_A           90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----  165 (402)
T ss_dssp             CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----
T ss_pred             CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----
Confidence            99 9999999999999999999987       6678889999999999999996  89999999999999998543    


Q ss_pred             eeeeeee--ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce---eeEEEEecCCEEEEE---eC
Q 047728          299 HFFSQTL--LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL---AILCLVTAGNLVFSG---SA  370 (474)
Q Consensus       299 ~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~sg---s~  370 (474)
                        ....+  ..|...|.+++|+|++++|++++.|+.|++||++++.........|..   ..+++++++.+|++|   +.
T Consensus       166 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  243 (402)
T 2aq5_A          166 --AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS  243 (402)
T ss_dssp             --EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred             --ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence              23444  678999999999999999999999999999999987766544356654   346677889999999   79


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG  449 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~  449 (474)
                      |+.|++||+++.+.........|...|.+++|+|++.        +|+ +|+.||.|++|++.++.+.      ...+..
T Consensus       244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~g~~dg~i~i~d~~~~~~~------~~~l~~  309 (402)
T 2aq5_A          244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN--------IVYLCGKGDSSIRYFEITSEAPF------LHYLSM  309 (402)
T ss_dssp             CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT--------EEEEEETTCSCEEEEEECSSTTC------EEEEEE
T ss_pred             CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCC--------EEEEEEcCCCeEEEEEecCCCcc------eEeecc
Confidence            9999999998765421222335778899999999998        664 6668999999999887431      222222


Q ss_pred             --CCCCCCccccCCCCCcCCceeecc
Q 047728          450 --HGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       450 --~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                        |...+.++    +|+||+++++++
T Consensus       310 ~~~~~~v~~~----~~sp~~~~~~s~  331 (402)
T 2aq5_A          310 FSSKESQRGM----GYMPKRGLEVNK  331 (402)
T ss_dssp             ECCSSCCSEE----EECCGGGSCGGG
T ss_pred             cccCCcccce----EEecccccceec
Confidence              55788888    667788887754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-32  Score=281.97  Aligned_cols=249  Identities=20%  Similarity=0.208  Sum_probs=201.6

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec----CCEEEEEeCCCeEEE
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRV  172 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~v  172 (474)
                      +..+.+|.+.|++++++  +++|++|+.||.|+|||..    +....+.+|.+.|.+++|+    +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            45678999999999976  8899999999999999854    4566788999999999996    579999999999999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcC
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~  250 (474)
                      ||+.+++....                              ..+.+|...|.+++|+|+  +++|++|+.||.|++||++
T Consensus        82 wd~~~~~~~~~------------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           82 WKEENGRWSQI------------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             EEEETTEEEEE------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             EECCCCccccc------------------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            99988642211                              123459999999999998  9999999999999999998


Q ss_pred             Ccc--eeeeeeecCcceeEEEecCC-------------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728          251 DYK--CLESVIAHDDAVNSIVAGFD-------------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA  314 (474)
Q Consensus       251 ~~~--~~~~~~~~~~~v~~v~~~~~-------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  314 (474)
                      ++.  ....+..|...|.+++|+|.             + .+++|+.||.|++||++....  .......+..|...|++
T Consensus       132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~h~~~V~~  209 (753)
T 3jro_A          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD  209 (753)
T ss_dssp             SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred             cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc--cceeeeeecCCCCcEEE
Confidence            873  44566789999999999993             5 899999999999999986543  22345667789999999


Q ss_pred             EEEcCC---CCEEEEEcCCCcEEEeecCccccc----ceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728          315 LAISPD---AAIVYCGSSDGLVNFWERELNLSH----GGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       315 l~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ++|+|+   +.+|++++.||.|++||++.....    ......|...+  +++++++++|++|+.||.|++||+....
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            999999   899999999999999999876321    11223344444  6777899999999999999999998543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=252.44  Aligned_cols=270  Identities=10%  Similarity=0.026  Sum_probs=200.6

Q ss_pred             EcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCcccee
Q 047728          118 AAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDF  195 (474)
Q Consensus       118 ~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  195 (474)
                      +++++|++|+.||+|++||...  .+..+.  ...|.++.+++. +++++.|++|++|+.+.........          
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~----------  112 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSK----------  112 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETT----------
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecC----------
Confidence            4588999999999999999553  333333  456777777766 9999999999999887532110000          


Q ss_pred             eeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecC
Q 047728          196 IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGF  272 (474)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~  272 (474)
                            ....  +.    ....+|...|.+++|+|  ++++|++++.|++|++||+++++++..... |...+.+++|+|
T Consensus       113 ------~~~~--~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p  180 (343)
T 3lrv_A          113 ------TNKV--LR----EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK  180 (343)
T ss_dssp             ------TCCE--EE----EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT
T ss_pred             ------Ccce--eE----EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC
Confidence                  0000  00    11124678999999999  999999999999999999999998766643 456899999999


Q ss_pred             CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--
Q 047728          273 DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL--  348 (474)
Q Consensus       273 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--  348 (474)
                      ++ +|++|+.||.|++||++.....     ...+.. |...|++++|+|++.+|++++ |+.|++||+++......+.  
T Consensus       181 dg~~lasg~~dg~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~  254 (343)
T 3lrv_A          181 DSLLLALYSPDGILDVYNLSSPDQA-----SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY  254 (343)
T ss_dssp             TSCEEEEECTTSCEEEEESSCTTSC-----CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCCCC-----ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc
Confidence            99 8999999999999999876541     134455 899999999999999999999 5599999999875542221  


Q ss_pred             eecce----eeEEEEecCCEEEEEeC-CCcEEEEECCCCceEEEEeecCCccceEEEEEee---CCccccccceEEEEEe
Q 047728          349 RGHKL----AILCLVTAGNLVFSGSA-DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK---DDESLSREKRWILYSG  420 (474)
Q Consensus       349 ~~~~~----~v~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~~~~l~s~  420 (474)
                      ..|..    ..+++++++++|++++. |+.|++|++......  ...    .++..++|.+   +..        .++++
T Consensus       255 ~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~--------~l~~~  320 (343)
T 3lrv_A          255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK----DEESALCLQSDTADFT--------DMDVV  320 (343)
T ss_dssp             BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE----EEEEECCC----CCCC--------EEEEE
T ss_pred             ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe----cCceeEecCccccccc--------eeEEE
Confidence            11222    24788889999999998 999999999765422  111    5678888888   666        78888


Q ss_pred             cCCCcEEEEEcc
Q 047728          421 SLDKSVKMWRVS  432 (474)
Q Consensus       421 s~Dg~i~vw~~~  432 (474)
                      +.||.+.++-..
T Consensus       321 ~~d~~~~~~~~~  332 (343)
T 3lrv_A          321 CGDGGIAAILKT  332 (343)
T ss_dssp             EETTEEEEEEEC
T ss_pred             ecCCceEEEEec
Confidence            899999887644

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.8e-32  Score=259.41  Aligned_cols=276  Identities=10%  Similarity=0.102  Sum_probs=200.3

Q ss_pred             ccCEEEEEec--CCEEEEEeCCC-------eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          148 SGLVKAIVIS--NEKIFSGHQDG-------KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ..+|.+++|+  +.+|++|+.|.       .|++|+++...........                      ......+.+
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~----------------------~~~~~~l~~   71 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH----------------------ILSEFALED   71 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE----------------------EEEEEECCT
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee----------------------eeeEEEccC
Confidence            4579999998  55788887543       5999999876543211110                      001123445


Q ss_pred             ccCCeeEEEecCCCCEEEEEE-----------CCCcEEEEEcCCcceeee-e--------eecCcceeEEEecCCC-eEE
Q 047728          219 HFDAISSLSMSEDQNLLYSAS-----------WDKTFKVWRTSDYKCLES-V--------IAHDDAVNSIVAGFDG-LVF  277 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s-----------~dg~i~iwd~~~~~~~~~-~--------~~~~~~v~~v~~~~~~-~l~  277 (474)
                      |.+.|.+++++  ++.+++|.           .|+.+++|++.+...... .        ..+...+.+++|+||| +++
T Consensus        72 ~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la  149 (365)
T 4h5i_A           72 NDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA  149 (365)
T ss_dssp             TSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred             CCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence            88889888765  45666653           578899999865432211 1        1244568899999999 544


Q ss_pred             --EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-cceeeeeccee
Q 047728          278 --TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-HGGVLRGHKLA  354 (474)
Q Consensus       278 --~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~  354 (474)
                        +++.|++|+|||++....      .. ...|...|.+++|+|++++|++++.++ +.+|+..++.. .......|...
T Consensus       150 ~as~~~d~~i~iwd~~~~~~------~~-~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          150 IASSKVPAIMRIIDPSDLTE------KF-EIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             EEESCSSCEEEEEETTTTEE------EE-EEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE
T ss_pred             EEECCCCCEEEEeECCCCcE------EE-EeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC
Confidence              455799999999975432      22 234777899999999999999998665 55555544433 33344556655


Q ss_pred             e--EEEEecCCEEEEEeCCC----cEEEEECCCCceE--EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728          355 I--LCLVTAGNLVFSGSADM----SICIWRRKENEHI--CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV  426 (474)
Q Consensus       355 v--~~~~~~~~~l~sgs~dg----~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i  426 (474)
                      +  ++++++++++++++.|+    .+++|++......  ....+.+|..+|++++|+|+++        +||+|+.|++|
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~--------~lasgs~D~~V  293 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE--------LAVLASNDNSI  293 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC--------EEEEEETTSCE
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC--------ceEEEcCCCEE
Confidence            5  56778999999999887    6888998766532  2456788999999999999999        99999999999


Q ss_pred             EEEEccCCCCCCCCCccccc-ccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          427 KMWRVSEQAPPLVSTTQQHP-LEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       427 ~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      +|||+.++       .+... +.+|...|+++    +|||||++|+++|
T Consensus       294 ~iwd~~~~-------~~~~~~~~gH~~~V~~v----~fSpdg~~laS~S  331 (365)
T 4h5i_A          294 ALVKLKDL-------SMSKIFKQAHSFAITEV----TISPDSTYVASVS  331 (365)
T ss_dssp             EEEETTTT-------EEEEEETTSSSSCEEEE----EECTTSCEEEEEE
T ss_pred             EEEECCCC-------cEEEEecCcccCCEEEE----EECCCCCEEEEEe
Confidence            99999887       34444 57899999999    7889999999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.7e-31  Score=246.76  Aligned_cols=249  Identities=17%  Similarity=0.245  Sum_probs=201.3

Q ss_pred             ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecC--CC-eEEEeeCCCcEE
Q 047728          214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGF--DG-LVFTGSADGTVK  286 (474)
Q Consensus       214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~--~~-~l~~~~~dg~i~  286 (474)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +.+..+..|...|.+++|+|  ++ +|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            355679999999999999999999999999999999876    46677788999999999999  45 999999999999


Q ss_pred             EEEcccCCCc---eeeeeeeeeecccccEEEEEEcCC--CCEEEEEcCCCcEEEeecCcccccceeee------------
Q 047728          287 VWRRELQGKG---TKHFFSQTLLKQECAVTALAISPD--AAIVYCGSSDGLVNFWERELNLSHGGVLR------------  349 (474)
Q Consensus       287 iwd~~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------------  349 (474)
                      +||++.....   ........+..|...|.+++|+|+  +.+|++++.|+.|++||+++.........            
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999865321   111345666789999999999999  99999999999999999987765433221            


Q ss_pred             ecceeeEEE--Eec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC----ccccccceEEEEEe
Q 047728          350 GHKLAILCL--VTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD----ESLSREKRWILYSG  420 (474)
Q Consensus       350 ~~~~~v~~~--~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~~~~~~~~~l~s~  420 (474)
                      .|...+.++  +++   +.++++++.|+.+.+|+...++...+..+.+|...|++++|+|++    .        +|+++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~--------~l~s~  236 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ--------LIATG  236 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE--------EEEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce--------EEEEE
Confidence            344445444  454   899999999999999998888766678889999999999999998    6        89999


Q ss_pred             cCCCcEEEEEccCCCCCCC---------------------------------------CCcccccccCCCCCCCccccCC
Q 047728          421 SLDKSVKMWRVSEQAPPLV---------------------------------------STTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       421 s~Dg~i~vw~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      +.||.|++||+..+.....                                       .......+.+|...|+++    
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~----  312 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV----  312 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEE----
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE----
Confidence            9999999999987532211                                       013455677899999999    


Q ss_pred             CCCcCCceeeccC
Q 047728          462 SFSSQGRICQKRS  474 (474)
Q Consensus       462 ~~s~Dg~~l~~~s  474 (474)
                      +|+|||++|+++|
T Consensus       313 ~~s~~~~~l~s~~  325 (351)
T 3f3f_A          313 SWNLTGTILSSAG  325 (351)
T ss_dssp             EECSSSCCEEEEE
T ss_pred             EEcCCCCEEEEec
Confidence            5677888887753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.6e-31  Score=249.05  Aligned_cols=286  Identities=10%  Similarity=0.089  Sum_probs=202.2

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEE-EEEeCCCeEEEEec
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKV  175 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~  175 (474)
                      ..+..+..|.+.|++++|+  |++|++|+.+| ++||+..........+...+..+.+.  ++.+ ++++.|++|++||+
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            3455668899999999987  88999998876 78999664433333222234455554  6655 67888899999999


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-ce
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KC  254 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~  254 (474)
                      .+++.....                                 .+...|.+++|+++.  ++++ .|+.|++||+.++ +.
T Consensus        89 ~~~~~~~~~---------------------------------~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~  132 (355)
T 3vu4_A           89 VKKQDVSRI---------------------------------KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR  132 (355)
T ss_dssp             TTTEEEEEE---------------------------------ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB
T ss_pred             CCCcEEEEE---------------------------------ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee
Confidence            887654321                                 266789999998763  4444 4789999999988 77


Q ss_pred             eeeeeecCcceeEEEecCCCeEEE--eeCCCcEEEEEcccCCCc---------eeeee-eeeeecccccEEEEEEcCCCC
Q 047728          255 LESVIAHDDAVNSIVAGFDGLVFT--GSADGTVKVWRRELQGKG---------TKHFF-SQTLLKQECAVTALAISPDAA  322 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~~l~~--~~~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~~~~~v~~l~~~~~~~  322 (474)
                      +..+..   +...+++++ ..+++  |+.||.|++||++.....         ..... ...+.+|...|++++|+|+++
T Consensus       133 ~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~  208 (355)
T 3vu4_A          133 ITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD  208 (355)
T ss_dssp             SSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred             eEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence            777665   334455666 54444  789999999999864310         00011 456788999999999999999


Q ss_pred             EEEEEcCCCc-EEEeecCcccccceeeee-cceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEee--------
Q 047728          323 IVYCGSSDGL-VNFWERELNLSHGGVLRG-HKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSML--------  390 (474)
Q Consensus       323 ~l~~~~~dg~-i~v~d~~~~~~~~~~~~~-~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--------  390 (474)
                      +|++++.|++ |++||++++.....+..+ |...+.  ++++++++|++++.|++|++||+..........+        
T Consensus       209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  288 (355)
T 3vu4_A          209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY  288 (355)
T ss_dssp             EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence            9999999998 999999988776555434 777664  5566899999999999999999976532111111        


Q ss_pred             -------------cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          391 -------------TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       391 -------------~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                                   ..+..+...++|++++.        +|++++.||.+++|++..+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~--------~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          289 FQSEWSLCNFKLSVDKHVRGCKIAWISESS--------LVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCCSSCSEEEECCCCTTCCCCEEEESSSSE--------EEEEETTTTEEEEEEEEEET
T ss_pred             cccccceeEEEeccCCCCCceEEEEeCCCC--------EEEEEeCCCeEEEEEEEcCC
Confidence                         11223347799999998        89999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.5e-30  Score=249.55  Aligned_cols=298  Identities=17%  Similarity=0.200  Sum_probs=224.6

Q ss_pred             CCcEEEEe--CCccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728          129 SKNIRVWK--NQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS  203 (474)
Q Consensus       129 dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (474)
                      ++.+++|+  ..+....+.+|.+.|.+++|+   +++|++|+.||.|++|++.++...........              
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------------   87 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV--------------   87 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------------
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------------
Confidence            34566775  456677788899999999997   47999999999999999998765433221110              


Q ss_pred             CeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC----eEEE
Q 047728          204 NYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG----LVFT  278 (474)
Q Consensus       204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~~  278 (474)
                           .........+|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+. +...+.++.+.+.+    .+++
T Consensus        88 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (408)
T 4a11_B           88 -----CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAV  161 (408)
T ss_dssp             -----EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEE
T ss_pred             -----ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEE
Confidence                 0000111234999999999999 78899999999999999999998888775 67889999998854    7999


Q ss_pred             eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceee---------
Q 047728          279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVL---------  348 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~---------  348 (474)
                      ++.|+.|++||++....      ...+..|...|.+++|+|++. +|++++.||.|++||++........+         
T Consensus       162 ~~~~~~v~~~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  235 (408)
T 4a11_B          162 GTRGPKVQLCDLKSGSC------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ  235 (408)
T ss_dssp             EESSSSEEEEESSSSCC------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred             EcCCCeEEEEeCCCcce------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence            99999999999986543      455667899999999999988 58999999999999998765332222         


Q ss_pred             ------eecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-----ccceEEEEEeeCCccccccceE
Q 047728          349 ------RGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-----SGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       349 ------~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                            ..|...+.  ++++++++|++++.||.|++||+.+++...  ....+     ...+..........        
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------  305 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL--VNYGKVCNNSKKGLKFTVSCGCSS--------  305 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC--CCCCCCCCCCSSCCCCEECCSSSS--------
T ss_pred             eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce--eccccccccccccceeEEecCCCc--------
Confidence                  45666664  455689999999999999999999876421  22111     11122122222223        


Q ss_pred             EEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          416 ILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .++.++.|+.|++||+.++       .....+.+|...|.++    +|+|||++|+++
T Consensus       306 ~~~~~~~~~~i~v~d~~~~-------~~~~~~~~~~~~v~~~----~~s~~~~~l~s~  352 (408)
T 4a11_B          306 EFVFVPYGSTIAVYTVYSG-------EQITMLKGHYKTVDCC----VFQSNFQELYSG  352 (408)
T ss_dssp             CEEEEEETTEEEEEETTTC-------CEEEEECCCSSCEEEE----EEETTTTEEEEE
T ss_pred             eEEEEecCCEEEEEECcCC-------cceeeeccCCCeEEEE----EEcCCCCEEEEE
Confidence            5777788999999999887       5566788899999999    667788888765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.2e-29  Score=248.46  Aligned_cols=243  Identities=12%  Similarity=0.085  Sum_probs=191.0

Q ss_pred             CccCEEEEEec--CCEE-EEEeCCCeEEEEecC--CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728          147 NSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVS--SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD  221 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  221 (474)
                      |...|.+++|+  +++| ++++.||.|++|++.  +++.......                              ..|..
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------~~~~~  150 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------------------FCFSK  150 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------------------EECSS
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------------------ccCCC
Confidence            44479999998  5675 899999999999998  5544322111                              13778


Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee----eeeecCcceeEEEecCC---C-eEEEeeCCCcEEEEEcccC
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE----SVIAHDDAVNSIVAGFD---G-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~v~~~~~---~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      .|.+++|+|++++|++|+.|+.|++|++.+++...    .+.+|...|.+++|+|+   + +|++++.|+.|++||++..
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            99999999999999999999999999998877554    78889999999999999   8 8999999999999999865


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----------------------
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-----------------------  350 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------------------  350 (474)
                      ..     ......+|...|.+++|+ ++++|++++.|+.|++||++++.....+...                       
T Consensus       231 ~~-----~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (450)
T 2vdu_B          231 FI-----VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND  304 (450)
T ss_dssp             TC-----EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred             ce-----eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence            43     222355789999999999 9999999999999999999887654333211                       


Q ss_pred             -cc--eeeEEEEecCCEEEEEe-CCCcEEEEEC--CCC-ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC-
Q 047728          351 -HK--LAILCLVTAGNLVFSGS-ADMSICIWRR--KEN-EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL-  422 (474)
Q Consensus       351 -~~--~~v~~~~~~~~~l~sgs-~dg~i~iwd~--~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~-  422 (474)
                       ..  ...+++.+++++|++++ .|+.|++|++  ..+ ....+..+..| +.|.+++|+|++.        +++.++. 
T Consensus       305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~--------~v~~~~~~  375 (450)
T 2vdu_B          305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF--------QVTLDNKE  375 (450)
T ss_dssp             CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE--------EEEECCTT
T ss_pred             cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE--------EEEEeccc
Confidence             11  22355667899999999 8999999999  443 23356677777 8899999999643        4444443 


Q ss_pred             -----CCcEEEEEccCC
Q 047728          423 -----DKSVKMWRVSEQ  434 (474)
Q Consensus       423 -----Dg~i~vw~~~~~  434 (474)
                           +..|.+|.+...
T Consensus       376 ~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          376 SSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             CCSSCCCSEEEEEEETT
T ss_pred             CCCCCCcceEEEEEEcC
Confidence                 566899988754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=7e-31  Score=252.46  Aligned_cols=236  Identities=12%  Similarity=0.119  Sum_probs=175.8

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-------
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-------  230 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-------  230 (474)
                      +.+|++++.|++|+|||+..++.......                           ..+.+|.+.|++++|+|       
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~---------------------------~~~~gH~~~v~~v~~~p~~~~~~~  153 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVL---------------------------GGKSGHHNFVNDIDIADVYSADNR  153 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEE---------------------------CTTTSCSSCEEEEEEEEEECTTCS
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeee---------------------------cccCCCCCceEEEEEccccccccC
Confidence            34799999999999999988765433222                           23456999999999997       


Q ss_pred             -CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee-------
Q 047728          231 -DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF-------  300 (474)
Q Consensus       231 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-------  300 (474)
                       ++++|++|+.|++|+|||++++.++..+..|...|.+++|+|++  +|++++.|++|++||++.........       
T Consensus       154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence             78999999999999999999988888888999999999999987  79999999999999998654321100       


Q ss_pred             ------------eeeeeecccccEEEEEEc-CCCCEEEEEcCCCcEEEeecCcccccceeeeecceee------------
Q 047728          301 ------------FSQTLLKQECAVTALAIS-PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI------------  355 (474)
Q Consensus       301 ------------~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v------------  355 (474)
                                  .......|...+.++.|. ++++.|++++.|+.+++||+........ +..|...+            
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~  312 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE-ISDSTMKLGPKNLLPNVQGI  312 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce-EeeecCccccEEEccccccc
Confidence                        011224567788999987 7999999999999999999876543321 11121111            


Q ss_pred             --------EEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728          356 --------LCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS  425 (474)
Q Consensus       356 --------~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~  425 (474)
                              .++.+  ++.++++|+.||.|+|||+.+++.  ...+..|..+|.+++|+||++        +||+++.|| 
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~--------~LA~as~~G-  381 (393)
T 4gq1_A          313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGS--------HLAIATEGS-  381 (393)
T ss_dssp             CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSS--------EEEEEESSE-
T ss_pred             cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCC--------EEEEEeCCC-
Confidence                    12222  345778888999999999998873  456667889999999999999        999998776 


Q ss_pred             EEEEEcc
Q 047728          426 VKMWRVS  432 (474)
Q Consensus       426 i~vw~~~  432 (474)
                      +.+|++.
T Consensus       382 v~lvrL~  388 (393)
T 4gq1_A          382 VLLTRLM  388 (393)
T ss_dssp             EEEEEEG
T ss_pred             eEEEEEe
Confidence            6677764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-30  Score=271.68  Aligned_cols=251  Identities=17%  Similarity=0.268  Sum_probs=205.5

Q ss_pred             cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ..+.+|.+.|++++|+  +++|++|+.||.|++|++..+.....                              ..+.+|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~------------------------------~~l~~h   52 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI------------------------------DTLTGH   52 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE------------------------------EEECCC
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc------------------------------eeccCC
Confidence            4578999999999998  67999999999999999975432111                              234569


Q ss_pred             cCCeeEEEecCC--CCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEccc
Q 047728          220 FDAISSLSMSED--QNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       220 ~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~  292 (474)
                      ...|++++|+++  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + .+++|+.||.|++||++.
T Consensus        53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            999999999987  9999999999999999999887  67778889999999999998  7 999999999999999986


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcC-------------CCCEEEEEcCCCcEEEeecCcccc---cceeeeecceeeE
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISP-------------DAAIVYCGSSDGLVNFWERELNLS---HGGVLRGHKLAIL  356 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~  356 (474)
                      ....    .......|...|.+++|+|             ++.+|++++.||.|++||++....   ....+.+|...+.
T Consensus       133 ~~~~----~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~  208 (753)
T 3jro_A          133 NGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (753)
T ss_dssp             SSCC----CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             CCCc----ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence            5332    2344567889999999999             589999999999999999987642   3344567777775


Q ss_pred             EE--Eec---CCEEEEEeCCCcEEEEECCCCceE---EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728          357 CL--VTA---GNLVFSGSADMSICIWRRKENEHI---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       357 ~~--~~~---~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                      ++  +++   +.+|++|+.||.|++||+.+++..   .......|...|++++|+|++.        +|++++.||.|++
T Consensus       209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--------~l~s~s~Dg~I~v  280 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN--------VLALSGGDNKVTL  280 (753)
T ss_dssp             EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC--------CEEEECSSSCEEC
T ss_pred             EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC--------EEEEEcCCCEEEE
Confidence            55  556   889999999999999999876421   1234456889999999999999        8999999999999


Q ss_pred             EEccCC
Q 047728          429 WRVSEQ  434 (474)
Q Consensus       429 w~~~~~  434 (474)
                      |++...
T Consensus       281 wd~~~~  286 (753)
T 3jro_A          281 WKENLE  286 (753)
T ss_dssp             CBCCSS
T ss_pred             EecCCC
Confidence            999853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=7.6e-30  Score=248.39  Aligned_cols=261  Identities=18%  Similarity=0.214  Sum_probs=206.7

Q ss_pred             cccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          142 SGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       142 ~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      .....|.+.|++++|++   .+|++++.||.|++|++.......... .                     .......+.+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-~---------------------~~~~~~~~~~  179 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-G---------------------ECQPDLRLRG  179 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-C---------------------CCCCSEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-c---------------------cCCCcEEecC
Confidence            34567899999999984   489999999999999998632110000 0                     0011124456


Q ss_pred             ccCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcce-------eeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEE
Q 047728          219 HFDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYKC-------LESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVW  288 (474)
Q Consensus       219 h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iw  288 (474)
                      |...|.+++|+|++. +|++|+.||.|++||+.++..       ...+..|...|.+++|+|+ + .|++++.||.|++|
T Consensus       180 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~  259 (430)
T 2xyi_A          180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW  259 (430)
T ss_dssp             CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence            999999999999888 999999999999999987322       4556689999999999994 4 89999999999999


Q ss_pred             EcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--ecC-CE
Q 047728          289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAG-NL  364 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~-~~  364 (474)
                      |++......   ....+..|...|++++|+|++. +|++|+.||.|++||++........+..|...+.++.  +++ .+
T Consensus       260 d~~~~~~~~---~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~  336 (430)
T 2xyi_A          260 DTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI  336 (430)
T ss_dssp             ETTCSCSSS---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             ECCCCCCCc---ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence            998653111   2344568889999999999887 7889999999999999986556667777887776655  556 57


Q ss_pred             EEEEeCCCcEEEEECCCCc------------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          365 VFSGSADMSICIWRRKENE------------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       365 l~sgs~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      |++++.|+.|+|||+....            ...+..+.+|...|++++|+|++..       +|++++.||.|+||++.
T Consensus       337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-------~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT-------EEEEEETTSEEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC-------EEEEEECCCCEEEeEcc
Confidence            9999999999999997621            1256778899999999999999874       79999999999999997


Q ss_pred             CC
Q 047728          433 EQ  434 (474)
Q Consensus       433 ~~  434 (474)
                      ..
T Consensus       410 ~~  411 (430)
T 2xyi_A          410 EN  411 (430)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-30  Score=250.17  Aligned_cols=228  Identities=16%  Similarity=0.135  Sum_probs=183.7

Q ss_pred             eeccCCeeEEEecCCCCEE-EEEECCCcEEEEEcC--Ccceeeeee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEc
Q 047728          217 IKHFDAISSLSMSEDQNLL-YSASWDKTFKVWRTS--DYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRR  290 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~  290 (474)
                      .+|...|++++|+|++++| ++++.|+.|++||+.  +++.+..+.  .|...|.+++|+|++ .|++++.+|.|++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4577889999999999996 889999999999999  888888886  567899999999999 9999999999999998


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCC---CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEE
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPD---AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVF  366 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~  366 (474)
                      .......  .....+..|...|++++|+|+   +++|++++.|+.|++||++++........+|...+.++.+ ++++|+
T Consensus       179 ~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~  256 (450)
T 2vdu_B          179 NSIPEEK--FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLL  256 (450)
T ss_dssp             TSCCCSS--CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEE
T ss_pred             CCccccc--ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEE
Confidence            7654311  012355678899999999999   9999999999999999999887665556688877766555 799999


Q ss_pred             EEeCCCcEEEEECCCCceEEEEeec-------------------------CCccceEEEEEeeCCccccccceEEEEEec
Q 047728          367 SGSADMSICIWRRKENEHICLSMLT-------------------------GHSGPVKCLAVEKDDESLSREKRWILYSGS  421 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~~~~~~~~~~-------------------------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s  421 (474)
                      +|+.|+.|++||+.+++..  ..+.                         .+...|.+++|+|++.        +|++++
T Consensus       257 s~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--------~l~~~~  326 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNL--STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP--------FVAFFV  326 (450)
T ss_dssp             EEESSSEEEEEETTTCCEE--EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS--------EEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEe--eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC--------EEEEEE
Confidence            9999999999999988743  3333                         2345799999999998        788887


Q ss_pred             -CCCcEEEEEc--cCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          422 -LDKSVKMWRV--SEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       422 -~Dg~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                       .|+.|+||++  .....    ......+..| ..|.+++|+|
T Consensus       327 ~~d~~i~iw~~~~~~~~~----l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          327 EATKCIIILEMSEKQKGD----LALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             TTCSEEEEEEECSSSTTC----EEEEEEEECS-SCEEEEEEET
T ss_pred             CCCCeEEEEEeccCCCCc----eeeccEeccC-CceEEEEecC
Confidence             8999999999  33211    1344456666 6788885554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8.2e-30  Score=248.16  Aligned_cols=253  Identities=17%  Similarity=0.230  Sum_probs=204.4

Q ss_pred             ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC------------ccccccccCccCEEEEEec--CC-EE
Q 047728          100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ------------REFSGFKSNSGLVKAIVIS--NE-KI  161 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~------------~~~~~~~~h~~~V~~i~~~--~~-~l  161 (474)
                      ...+..+..|.+.|++++++   +++|++|+.||.|++|+..            .....+.+|...|.+++|+  +. +|
T Consensus       118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  197 (430)
T 2xyi_A          118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL  197 (430)
T ss_dssp             CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred             ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence            34456778899999999987   4589999999999999854            3456678999999999998  34 99


Q ss_pred             EEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEEC
Q 047728          162 FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASW  240 (474)
Q Consensus       162 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~  240 (474)
                      ++|+.||.|++|++..........                         .....+.+|...|.+++|+| ++.+|++++.
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~  252 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVI-------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVAD  252 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEE-------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             EEEeCCCeEEEEeCCCCCCCCcee-------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence            999999999999998753211000                         00123446999999999999 7789999999


Q ss_pred             CCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          241 DKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       241 dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      |+.|++||++++   +.+..+..|...|++++|+|++  .+++|+.||.|++||++....     ....+..|...|.++
T Consensus       253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----KLHSFESHKDEIFQV  327 (430)
T ss_dssp             TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----CSEEEECCSSCEEEE
T ss_pred             CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----CeEEeecCCCCEEEE
Confidence            999999999987   5777888999999999999988  688999999999999986443     345666789999999


Q ss_pred             EEcCCCC-EEEEEcCCCcEEEeecCccc-------------ccceeeeecceeeEEE--EecCC-EEEEEeCCCcEEEEE
Q 047728          316 AISPDAA-IVYCGSSDGLVNFWERELNL-------------SHGGVLRGHKLAILCL--VTAGN-LVFSGSADMSICIWR  378 (474)
Q Consensus       316 ~~~~~~~-~l~~~~~dg~i~v~d~~~~~-------------~~~~~~~~~~~~v~~~--~~~~~-~l~sgs~dg~i~iwd  378 (474)
                      +|+|++. +|++++.|+.|++||+....             .......+|...+.++  ++++. +|++++.||.|+||+
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            9999884 79999999999999998632             2233445677666555  45677 999999999999999


Q ss_pred             CCCC
Q 047728          379 RKEN  382 (474)
Q Consensus       379 ~~~~  382 (474)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=5.5e-29  Score=235.87  Aligned_cols=241  Identities=12%  Similarity=0.147  Sum_probs=177.1

Q ss_pred             CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccc
Q 047728          137 NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNG  214 (474)
Q Consensus       137 ~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (474)
                      ..+.+.....|...|.+++|+  +.+|++|+.++ +++|++++.+....                               
T Consensus         8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-------------------------------   55 (355)
T 3vu4_A            8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-------------------------------   55 (355)
T ss_dssp             -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-------------------------------
T ss_pred             ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-------------------------------
Confidence            334555668899999999998  66888887775 88999876543211                               


Q ss_pred             eeeeccCCeeEEEecCCCCEE-EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccC
Q 047728          215 LWIKHFDAISSLSMSEDQNLL-YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       215 ~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~  293 (474)
                         .+...+..+++.++++.+ ++++.|++|++||+.+++++..+. +...|.++.++++..+++  .|+.|++||+...
T Consensus        56 ---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~  129 (355)
T 3vu4_A           56 ---QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNP  129 (355)
T ss_dssp             ---EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTT
T ss_pred             ---eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCC
Confidence               122357788888888777 567788999999999999998886 677999999998754332  4889999999865


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEE--EcCCCcEEEeecCcccc--------------c-ceeeeecceeeE
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYC--GSSDGLVNFWERELNLS--------------H-GGVLRGHKLAIL  356 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~v~d~~~~~~--------------~-~~~~~~~~~~v~  356 (474)
                      ...     ...+..   ....+++++  .++++  |+.||.|++||+++...              . ...+.+|...|.
T Consensus       130 ~~~-----~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~  199 (355)
T 3vu4_A          130 WKR-----ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK  199 (355)
T ss_dssp             CCB-----SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred             cee-----eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence            221     111111   344566666  56665  68999999999987541              1 456778888775


Q ss_pred             E--EEecCCEEEEEeCCCc-EEEEECCCCceEEEEeec-C-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          357 C--LVTAGNLVFSGSADMS-ICIWRRKENEHICLSMLT-G-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       357 ~--~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      +  +++++++|++|+.|++ |++||+++++  ++..+. + |...|++++|+|++.        +|++++.|++|++||+
T Consensus       200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~--------~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDGS--------KLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             EEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTSC--------EEEEEETTCEEEEEES
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCCC--------EEEEEECCCEEEEEEc
Confidence            5  4568999999999998 9999999888  456676 5 999999999999999        9999999999999999


Q ss_pred             cCCC
Q 047728          432 SEQA  435 (474)
Q Consensus       432 ~~~~  435 (474)
                      ....
T Consensus       270 ~~~~  273 (355)
T 3vu4_A          270 FNDQ  273 (355)
T ss_dssp             SCCS
T ss_pred             cCCC
Confidence            8753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3.5e-29  Score=227.49  Aligned_cols=288  Identities=14%  Similarity=0.108  Sum_probs=197.5

Q ss_pred             CcceeeeeeeeecCc----EEEEEEc--C--C-EEEEeeCCCcEEEEeCC-----ccccccccCccCEEEEEecCC---E
Q 047728           98 SPNVLIGSLVREEGH----IYSLAAA--G--D-LLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVISNE---K  160 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~----i~~~~~~--~--~-~l~tgs~dg~v~vwd~~-----~~~~~~~~h~~~V~~i~~~~~---~  160 (474)
                      ...+++..|+.-.+.    +.++-+.  +  + .++++++ ..|++|+..     +.+..++.|..+|..|.+.++   .
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  101 (356)
T 2w18_A           23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL  101 (356)
T ss_dssp             -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred             ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence            445778888876654    3344333  2  2 5677775 579999844     457788899999999999852   3


Q ss_pred             EEEEeCC-CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728          161 IFSGHQD-GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS  239 (474)
Q Consensus       161 l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  239 (474)
                      +..+-.+ ..-.++.+.-....        ...           ....       .-.+|...|..+   ++++++.+++
T Consensus       102 ~~~~~~~~~~~~v~sla~spd~--------~~~-----------~~~l-------~s~g~~~~v~~l---~~g~lv~ss~  152 (356)
T 2w18_A          102 VCVALGNLEIREIRALFCSSDD--------ESE-----------KQVL-------LKSGNIKAVLGL---TKRRLVSSSG  152 (356)
T ss_dssp             EEEEECSSSEEEEEEECC--------------C-----------CEEE-------EEEEEEEEEEEE---TTTEEEEEES
T ss_pred             eeeeeccccccceEEEEECCCc--------ccc-----------ccEE-------EeCCCeEEEEec---CCCcEEEecc
Confidence            3222211 11112221111000        000           0000       001244445554   4555555543


Q ss_pred             --CCCcEEEEEc-CCcceeeeeeecCcceeEEEecC---CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc---c
Q 047728          240 --WDKTFKVWRT-SDYKCLESVIAHDDAVNSIVAGF---DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ---E  309 (474)
Q Consensus       240 --~dg~i~iwd~-~~~~~~~~~~~~~~~v~~v~~~~---~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~  309 (474)
                        .|+.|++|++ .+++.+..+..|...+..++|++   ++ .|++++.|++|+|||+++++.      ...+.+|   .
T Consensus       153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~------l~tL~g~~~~v  226 (356)
T 2w18_A          153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL------LKKMHIDDSYQ  226 (356)
T ss_dssp             SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE------EEEEECCC---
T ss_pred             cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE------EEEEcCCCcce
Confidence              5999999999 55888899999999999999998   55 999999999999999987653      3444433   3


Q ss_pred             ccEEEEEEcCCCCEE------------EEEcCCCcEEEeecCccccccee----eeecceeeEEEEecCCEEEEEeCCCc
Q 047728          310 CAVTALAISPDAAIV------------YCGSSDGLVNFWERELNLSHGGV----LRGHKLAILCLVTAGNLVFSGSADMS  373 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l------------~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~l~sgs~dg~  373 (474)
                      ..+.+++|+|++.++            ++|+.|++|++||..++......    ..+|....++.+.++.++++|+.|++
T Consensus       227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgT  306 (356)
T 2w18_A          227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGT  306 (356)
T ss_dssp             CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSC
T ss_pred             eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCc
Confidence            467888999999876            56788999999999888655322    23666666677777899999999999


Q ss_pred             EEEEECCCCceEEEEeecCCccceE-EEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVK-CLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      |+|||+.+++  ++.++.+|...+. .++|+||++        +|++|+.|++|+|||+
T Consensus       307 IkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~--------~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          307 IAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDS--------HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTTCS--EEEEECCC--CCCCEEEECSSSS--------EEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCc--EEEEecCCCCCeEEEEEECCCCC--------EEEEEECCCcEEEecC
Confidence            9999999998  6788889987665 589999999        9999999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.3e-30  Score=241.83  Aligned_cols=227  Identities=8%  Similarity=0.070  Sum_probs=173.3

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      +..|++|+.||+|++||+.+++......                                  ...|.++.|+|+   +++
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------~~~v~~~~~~~~---~~s   90 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------TPNPRTGGEHPA---IIS   90 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------EECCCTTCCCCS---EEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------cCCceeeeeCCc---eEE
Confidence            6789999999999999999886543221                                  345677788887   999


Q ss_pred             EECCCcEEEEEcC---------Ccceeeeee-ecCcceeEEEecC--CC-eEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728          238 ASWDKTFKVWRTS---------DYKCLESVI-AHDDAVNSIVAGF--DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT  304 (474)
Q Consensus       238 ~s~dg~i~iwd~~---------~~~~~~~~~-~~~~~v~~v~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (474)
                      ++.|++|++|+..         +++.+..+. .|...|.+++++|  ++ ++++++.||.|++||++....     ....
T Consensus        91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~  165 (343)
T 3lrv_A           91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVH  165 (343)
T ss_dssp             ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEE
T ss_pred             ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEE
Confidence            9999999999765         444444443 5668899999999  88 899999999999999986543     1112


Q ss_pred             eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEE--EecCCEEEEEeCCCcEEEEECCC
Q 047728          305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCL--VTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       305 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      ...+...+.+++|+|++.+|++|+.||.|++||++++......+.. |...+.++  ++++.+|++++ |+.|++||+++
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~  244 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK  244 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence            2345667999999999999999999999999999988766344555 88777655  55799999999 55999999988


Q ss_pred             CceEE-EEeecCCccceE--EEEEeeCCccccccceEEEEEecC-CCcEEEEEccCCC
Q 047728          382 NEHIC-LSMLTGHSGPVK--CLAVEKDDESLSREKRWILYSGSL-DKSVKMWRVSEQA  435 (474)
Q Consensus       382 ~~~~~-~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~l~s~s~-Dg~i~vw~~~~~~  435 (474)
                      .+... +..+..|...+.  +++|+|+++        +|++++. |+.|+||++....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGK--------NMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             STTCBSSCCCBC-----CCEEEEECTTSS--------EEEEEETTTTEEEEEEECTTT
T ss_pred             CCcceeecccccccccccceEEEECCCCC--------EEEEecCCCCcEEEEEEcccc
Confidence            76321 112222444444  699999999        8999888 9999999997654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=9.3e-28  Score=230.58  Aligned_cols=263  Identities=14%  Similarity=0.128  Sum_probs=201.7

Q ss_pred             CEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCcccee
Q 047728          121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDF  195 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  195 (474)
                      .++++++.|+.|++||..  +.+..+..|. .+.+++|+  +++| ++++.|+.|++||+.+++......          
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~----------   71 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----------   71 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE----------
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE----------
Confidence            468899999999999954  4455555554 58999998  5555 677799999999998876532211          


Q ss_pred             eeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728          196 IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG  274 (474)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  274 (474)
                                             +...+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+|++
T Consensus        72 -----------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg  127 (391)
T 1l0q_A           72 -----------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDG  127 (391)
T ss_dssp             -----------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred             -----------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCC
Confidence                                   334899999999999886555 679999999999998887765 4568999999998


Q ss_pred             -eE-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE-EEEcCCCcEEEeecCcccccceeeeec
Q 047728          275 -LV-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV-YCGSSDGLVNFWERELNLSHGGVLRGH  351 (474)
Q Consensus       275 -~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~  351 (474)
                       .+ ++++.++.|++||++....      ...+. ....+.+++|+|+++.| ++++.++.|++||++++..........
T Consensus       128 ~~l~~~~~~~~~v~~~d~~~~~~------~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  200 (391)
T 1l0q_A          128 KKLYVTNNGDKTVSVINTVTKAV------INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA  200 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEE------EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             CEEEEEeCCCCEEEEEECCCCcE------EEEEe-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence             45 7888899999999875432      22222 24567999999999887 577889999999998876553333222


Q ss_pred             ceeeEEEEecCCEEEEEe---CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728          352 KLAILCLVTAGNLVFSGS---ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       352 ~~~v~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                      ....+++++++++|++++   .++.|++||+.+++  .+..+..|. .+.+++|+|+++.       ++++++.|+.|++
T Consensus       201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~-~~~~~~~s~dg~~-------l~~s~~~d~~v~v  270 (391)
T 1l0q_A          201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--ITARIPVGP-DPAGIAVTPDGKK-------VYVALSFXNTVSV  270 (391)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--EEEEEECCS-SEEEEEECTTSSE-------EEEEETTTTEEEE
T ss_pred             CccceEECCCCCEEEEEecCcCCCcEEEEECCCCe--EEEEEecCC-CccEEEEccCCCE-------EEEEcCCCCEEEE
Confidence            334466778899999888   68999999999887  345566554 5789999999982       3478899999999


Q ss_pred             EEccCCC
Q 047728          429 WRVSEQA  435 (474)
Q Consensus       429 w~~~~~~  435 (474)
                      ||+.+++
T Consensus       271 ~d~~~~~  277 (391)
T 1l0q_A          271 IDTATNT  277 (391)
T ss_dssp             EETTTTE
T ss_pred             EECCCCc
Confidence            9998763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.4e-27  Score=232.68  Aligned_cols=281  Identities=11%  Similarity=0.113  Sum_probs=214.5

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--cccc-----ccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFS-----GFKSNSGLVKAIVIS--NEKIFSGHQDGK  169 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~-----~~~~h~~~V~~i~~~--~~~l~s~~~dg~  169 (474)
                      ..+..+..+. .+.+++++  +.++++++.++.|++||..  +...     .+.+|...|.+++|+  +..+++++.|+.
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            4444554443 34466665  6688888889999999955  3333     456889999999996  668899999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEE
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWR  248 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd  248 (474)
                      |++||+++++....                                +..|...+.+++|+|+++.+++++ .|+.|++||
T Consensus       193 v~~~d~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          193 VHVFDLKTLAYKAT--------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVID  240 (433)
T ss_dssp             EEEEETTTCCEEEE--------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCceEEEE--------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence            99999987654321                                223788999999999999886555 799999999


Q ss_pred             cCCcceeeeeeecCcceeEEEecCCC-eEEEee--------CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728          249 TSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS--------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      +++++.+..+..+ ..+.+++|+|++ .+++++        .|+.|++||++....       .....+...+.+++|+|
T Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~  312 (433)
T 3bws_A          241 RKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-------IDTIGPPGNKRHIVSGN  312 (433)
T ss_dssp             TTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-------EEEEEEEECEEEEEECS
T ss_pred             CCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-------EeeccCCCCcceEEECC
Confidence            9999888877654 458999999999 777777        588999999975421       22234455789999999


Q ss_pred             CCCEE-EEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC---------------CCcEEEEECCCCc
Q 047728          320 DAAIV-YCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA---------------DMSICIWRRKENE  383 (474)
Q Consensus       320 ~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~---------------dg~i~iwd~~~~~  383 (474)
                      +++.+ ++++.++.|++||++++..............++++++++++++++.               ||.|++||+.+++
T Consensus       313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             CCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            99755 5668999999999987765544433333445677788998888876               5799999999887


Q ss_pred             eEEEEeecCCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccC
Q 047728          384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSE  433 (474)
Q Consensus       384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~  433 (474)
                      .  +..+.. ...+.+++|+|+++        +|++++ .|+.|++|++..
T Consensus       393 ~--~~~~~~-~~~~~~~~~s~dg~--------~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          393 V--KEFWEA-GNQPTGLDVSPDNR--------YLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             E--EEEEEC-SSSEEEEEECTTSC--------EEEEEETTTTEEEEEEETT
T ss_pred             E--EEEecC-CCCCceEEEcCCCC--------EEEEEECCCCeEEEEEecC
Confidence            3  444544 45799999999998        777665 599999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.1e-29  Score=244.22  Aligned_cols=237  Identities=14%  Similarity=0.125  Sum_probs=161.2

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee-----eeeeecCcceeEEEecC--------CC-eEEEeeCCCc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL-----ESVIAHDDAVNSIVAGF--------DG-LVFTGSADGT  284 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~v~~~~--------~~-~l~~~~~dg~  284 (474)
                      |...+....+.+++.+|++++.|++|++||+++++..     ..+.+|.+.|++++|+|        ++ +|++++.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            5555555666678889999999999999999887653     34578999999999987        56 8999999999


Q ss_pred             EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCccccccee----------------
Q 047728          285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGV----------------  347 (474)
Q Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~----------------  347 (474)
                      |+|||++...      .......|...|.+++|+|++ .+|++++.|+.|++||++++......                
T Consensus       168 v~~Wd~~~~~------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~  241 (393)
T 4gq1_A          168 LIIWRLTDEG------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT  241 (393)
T ss_dssp             EEEEEEETTE------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred             EEEEECCCCc------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence            9999997543      245667788999999999987 58999999999999999876432211                


Q ss_pred             --------eeecceeeEEE--E-ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc------
Q 047728          348 --------LRGHKLAILCL--V-TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS------  410 (474)
Q Consensus       348 --------~~~~~~~v~~~--~-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~------  410 (474)
                              ..+|...+.++  . ++++.|++++.|+++++||+..++  ....+..|...+..+.+.|+.....      
T Consensus       242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN--DYNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSS
T ss_pred             ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC--CCceEeeecCccccEEEccccccccccCcce
Confidence                    12344444333  3 579999999999999999998776  3445566666666666655432110      


Q ss_pred             ------ccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          411 ------REKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       411 ------~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                            ...+.++++|+.||.|++||+.++.       ....+.+|...|.++    +|||||++|+++|
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-------~~~~~~~~~~~V~sv----afspdG~~LA~as  378 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKD-------SNSIPIQLGMPIVDF----CWHQDGSHLAIAT  378 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTT-------CCEEEEECSSCEEEE----EECTTSSEEEEEE
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCc-------EEEEecCCCCcEEEE----EEcCCCCEEEEEe
Confidence                  1223478899999999999998873       334456788889988    7889999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.9e-29  Score=238.82  Aligned_cols=249  Identities=10%  Similarity=0.029  Sum_probs=188.1

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      .-...|.+++|+  |.++++++.|++|+  |....+.                                   +.+|...|
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----------------------------------l~gh~~~v   55 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----------------------------------INCNSKNL   55 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----------------------------------CSSBGGGT
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccce-----------------------------------ecCCCccE
Confidence            345788999998  77999999999999  6443322                                   13499999


Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      .+++|+|+|       .++.+.+|+.+.. .+..+ .|...|.+++|+|+| .|++++.||.|++||...        ..
T Consensus        56 ~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--------~l  118 (588)
T 2j04_A           56 FHVKEFPLE-------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--------ML  118 (588)
T ss_dssp             EEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--------EE
T ss_pred             EEEEECCCC-------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--------ee
Confidence            999999998       4666666654322 22232 458899999999999 899999999999999542        22


Q ss_pred             eeeecccc-----cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc------cceee----eecceeeEE--EEecCCEE
Q 047728          303 QTLLKQEC-----AVTALAISPDAAIVYCGSSDGLVNFWERELNLS------HGGVL----RGHKLAILC--LVTAGNLV  365 (474)
Q Consensus       303 ~~~~~~~~-----~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~~~~----~~~~~~v~~--~~~~~~~l  365 (474)
                      ..+. |..     .|.+++|+|+|++|++|+.||+|++||+..+..      ....+    .+|...|.+  ++|+|  +
T Consensus       119 ~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L  195 (588)
T 2j04_A          119 TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L  195 (588)
T ss_dssp             EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E
T ss_pred             eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E
Confidence            3333 443     599999999999999999999999999988743      12333    456667755  45566  8


Q ss_pred             EEEeCCCcEEEEECCCCceE-EEEee-cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcc
Q 047728          366 FSGSADMSICIWRRKENEHI-CLSML-TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQ  443 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~~~~-~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~  443 (474)
                      ++++.|+.|++||+.++... ...++ .+|...|.+++|+  +.        +|++++ |++|++|++..+.       .
T Consensus       196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~--------~LASa~-~~tIkLWd~~~~~-------~  257 (588)
T 2j04_A          196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY--------KVVLTC-PGYVHKIDLKNYS-------I  257 (588)
T ss_dssp             EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT--------EEEEEC-SSEEEEEETTTTE-------E
T ss_pred             EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC--------EEEEEe-CCeEEEEECCCCe-------E
Confidence            89999999999999877632 12345 4788999999999  45        788887 6999999998762       2


Q ss_pred             cccccCCCCCCCccccCCCC--CcCCceeecc
Q 047728          444 QHPLEGHGVAPNSLPYAPSF--SSQGRICQKR  473 (474)
Q Consensus       444 ~~~~~~~~~~v~~l~~~p~~--s~Dg~~l~~~  473 (474)
                      .....+|...+.++    +|  +|||+.++++
T Consensus       258 ~~~~~gh~~~V~~v----a~~~s~d~~~La~a  285 (588)
T 2j04_A          258 SSLKTGSLENFHII----PLNHEKESTILLMS  285 (588)
T ss_dssp             EEEECSCCSCCCEE----EETTCSSCEEEEEC
T ss_pred             EEEEcCCCceEEEE----EeeeCCCCCEEEEE
Confidence            12233799999999    56  8888877765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=3e-26  Score=220.01  Aligned_cols=293  Identities=14%  Similarity=0.153  Sum_probs=210.5

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEE-EEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEE-EEeCCCe
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLL-YTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIF-SGHQDGK  169 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l-~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~  169 (474)
                      ...+++..+..|.. +.+++++  +++| ++++.|+.|++||..  +.+..+..+. .+.+++|+  +++|+ +++.++.
T Consensus        20 ~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~   97 (391)
T 1l0q_A           20 TSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST   97 (391)
T ss_dssp             TTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence            34466667766654 7888876  6665 678899999999954  4444454444 89999998  55665 5557799


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE-EEEECCCcEEEEE
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL-YSASWDKTFKVWR  248 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd  248 (474)
                      |++||+.+++.....                                 .+...+.+++|+|+++.| ++++.|+.|++||
T Consensus        98 v~v~d~~~~~~~~~~---------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  144 (391)
T 1l0q_A           98 LSVIDTTSNTVAGTV---------------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVIN  144 (391)
T ss_dssp             EEEEETTTTEEEEEE---------------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEE---------------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            999999887543211                                 144568999999999977 6777899999999


Q ss_pred             cCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728          249 TSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      +.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||++....       .....+...+.+++|+|++++|++
T Consensus       145 ~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~g~~l~~  216 (391)
T 1l0q_A          145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-------IDTVKVEAAPSGIAVNPEGTKAYV  216 (391)
T ss_dssp             TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------EEEEECSSEEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-------EEEEecCCCccceEECCCCCEEEE
Confidence            9999988888765 456999999999 55 6778899999999975431       222334567899999999999998


Q ss_pred             Ec---CCCcEEEeecCcccccceeeeecceeeEEEEecCCEE-EEEeCCCcEEEEECCCCceEEEEeecCCccceE---E
Q 047728          327 GS---SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLV-FSGSADMSICIWRRKENEHICLSMLTGHSGPVK---C  399 (474)
Q Consensus       327 ~~---~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~---~  399 (474)
                      ++   .++.|++||++++.....+........+++++++++| ++++.|+.|++||+.+++  .+..+..|..+..   .
T Consensus       217 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~--~~~~~~~~~~~~~~~~~  294 (391)
T 1l0q_A          217 TNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT--ITATMAVGKNPYASGQF  294 (391)
T ss_dssp             EEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEECSSSEECCSSC
T ss_pred             EecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc--EEEEEECCcCCCcccee
Confidence            88   6899999999887655433333333346778889877 677889999999999887  3455555544321   1


Q ss_pred             EEEeeCCcccc--------------ccceEEEEEecCCCcEEEEEccCCC
Q 047728          400 LAVEKDDESLS--------------REKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       400 l~~~~~~~~~~--------------~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      +.+.|++....              -.....|...+.|..+++|++.++.
T Consensus       295 ~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          295 IGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             EEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             eecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence            33333221100              0011357778889999999998763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=8.6e-28  Score=234.08  Aligned_cols=290  Identities=14%  Similarity=0.105  Sum_probs=210.7

Q ss_pred             EeeCCCcEEEE--eC--C--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceee
Q 047728          125 TGSDSKNIRVW--KN--Q--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI  196 (474)
Q Consensus       125 tgs~dg~v~vw--d~--~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  196 (474)
                      +++.++.++||  |.  .  +.+..+..+ ..+.+++|+  +..+++++.|+.|++||+.+++.......          
T Consensus        94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----------  162 (433)
T 3bws_A           94 RKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP----------  162 (433)
T ss_dssp             SSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC----------
T ss_pred             cccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc----------
Confidence            34455544455  43  2  223334333 345588887  34667777888999999998765422111          


Q ss_pred             eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728          197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L  275 (474)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~  275 (474)
                                       ..+.+|...|.+++|++++.++++++.|+.|++||+++++.+..+..|...+.+++|+|++ .
T Consensus       163 -----------------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (433)
T 3bws_A          163 -----------------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDL  225 (433)
T ss_dssp             -----------------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTE
T ss_pred             -----------------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCE
Confidence                             1234588899999999999999999999999999999999999999899999999999998 5


Q ss_pred             E-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc--------CCCcEEEeecCcccccce
Q 047728          276 V-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS--------SDGLVNFWERELNLSHGG  346 (474)
Q Consensus       276 l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--------~dg~i~v~d~~~~~~~~~  346 (474)
                      + ++++.|+.|++||++....      ... ......+.+++|+|+++.|++++        .|+.|++||++++.....
T Consensus       226 l~~~~~~~~~i~~~d~~~~~~------~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~  298 (433)
T 3bws_A          226 VYCSNWISEDISVIDRKTKLE------IRK-TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT  298 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEE------EEE-CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred             EEEEecCCCcEEEEECCCCcE------EEE-ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence            5 5666899999999875431      222 22345699999999999999888        588999999987755433


Q ss_pred             eeeecceeeEEEEecCCE-EEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC---
Q 047728          347 VLRGHKLAILCLVTAGNL-VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL---  422 (474)
Q Consensus       347 ~~~~~~~~v~~~~~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~---  422 (474)
                      .........++++++++. +++++.|+.|++||+.+++.  +..+. +...+.+++|+|+++        +|++++.   
T Consensus       299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~--------~l~~~~~~~~  367 (433)
T 3bws_A          299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV--QKSIP-VFDKPNTIALSPDGK--------YLYVSCRGPN  367 (433)
T ss_dssp             EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--EEEEE-CSSSEEEEEECTTSS--------EEEEEECCCC
T ss_pred             ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--EEEec-CCCCCCeEEEcCCCC--------EEEEEecCCC
Confidence            322333344667778865 46668999999999998773  34443 677899999999998        6777665   


Q ss_pred             ------------CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          423 ------------DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       423 ------------Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                                  ||.|++||+.+++       ....+.. ...+.++    +|+|||+.++.
T Consensus       368 ~~~~~~~~~g~~dg~v~~~d~~~~~-------~~~~~~~-~~~~~~~----~~s~dg~~l~~  417 (433)
T 3bws_A          368 HPTEGYLKKGLVLGKVYVIDTTTDT-------VKEFWEA-GNQPTGL----DVSPDNRYLVI  417 (433)
T ss_dssp             CTTTCTTSCCSSCCEEEEEETTTTE-------EEEEEEC-SSSEEEE----EECTTSCEEEE
T ss_pred             ccccccccccccceEEEEEECCCCc-------EEEEecC-CCCCceE----EEcCCCCEEEE
Confidence                        6799999998763       3333333 2345566    67888988764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.8e-27  Score=227.78  Aligned_cols=282  Identities=11%  Similarity=0.043  Sum_probs=212.5

Q ss_pred             CCEEEEee----CCC----cEEEEeC--Cc--cc--cccccCccCEEEEEec----------------CCEEEEEeCC--
Q 047728          120 GDLLYTGS----DSK----NIRVWKN--QR--EF--SGFKSNSGLVKAIVIS----------------NEKIFSGHQD--  167 (474)
Q Consensus       120 ~~~l~tgs----~dg----~v~vwd~--~~--~~--~~~~~h~~~V~~i~~~----------------~~~l~s~~~d--  167 (474)
                      .+++++|+    .+|    .|++||.  ..  .+  ..+.+|...+..+++.                +..++.++.+  
T Consensus        75 ~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~  154 (415)
T 2hqs_A           75 IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNG  154 (415)
T ss_dssp             CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSS
T ss_pred             CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCC
Confidence            34677776    467    8999998  43  33  3467777777666554                5677776664  


Q ss_pred             ----CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCC-
Q 047728          168 ----GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDK-  242 (474)
Q Consensus       168 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-  242 (474)
                          +.|++||++.....                                 .+.+|...|.+++|+|++++|++++.++ 
T Consensus       155 ~~~~~~i~i~d~~g~~~~---------------------------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~  201 (415)
T 2hqs_A          155 GQFPYELRVSDYDGYNQF---------------------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESG  201 (415)
T ss_dssp             SSCCEEEEEEETTSCSCE---------------------------------EEEEESSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCccceEEEEcCCCCCCE---------------------------------EEeCCCCcceeeEEcCCCCEEEEEEecCC
Confidence                79999999754321                                 2345888999999999999999999885 


Q ss_pred             --cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCc--EEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728          243 --TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGT--VKVWRRELQGKGTKHFFSQTLLKQECAVTALA  316 (474)
Q Consensus       243 --~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  316 (474)
                        .|++||+.+++.. .+..|...+.+++|+|++ .|+ +++.++.  |++||++...       ...+..+...+.+++
T Consensus       202 ~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~  273 (415)
T 2hqs_A          202 RSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPT  273 (415)
T ss_dssp             SCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEE
T ss_pred             CcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceE
Confidence              9999999998775 566788899999999999 555 6666665  8899987543       234556778899999


Q ss_pred             EcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEee
Q 047728          317 ISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSML  390 (474)
Q Consensus       317 ~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~  390 (474)
                      |+|+++.|++++. ++  .|.+||+.++........++.....+++++|++|++++.+   ..|++||+.+++.   ..+
T Consensus       274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l  350 (415)
T 2hqs_A          274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVL  350 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EEC
T ss_pred             ECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEe
Confidence            9999999888776 45  6777888776532212222333446788899999988864   5899999998873   345


Q ss_pred             cCCccceEEEEEeeCCccccccceEEEEEecCCC---cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCC
Q 047728          391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK---SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS  462 (474)
Q Consensus       391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~  462 (474)
                      ..|. .+.+++|+|+++        +|++++.|+   .|++|++..+        ....+..|...|.+++|+|.
T Consensus       351 ~~~~-~~~~~~~spdg~--------~l~~~s~~~~~~~l~~~d~~g~--------~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          351 SSTF-LDETPSLAPNGT--------MVIYSSSQGMGSVLNLVSTDGR--------FKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             CCSS-SCEEEEECTTSS--------EEEEEEEETTEEEEEEEETTSC--------CEEECCCSSSEEEEEEECCC
T ss_pred             cCCC-CcCCeEEcCCCC--------EEEEEEcCCCccEEEEEECCCC--------cEEEeeCCCCCCcCCccccc
Confidence            5554 899999999999        788887776   7999998643        45567888889999988775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=3.4e-26  Score=227.90  Aligned_cols=306  Identities=12%  Similarity=0.086  Sum_probs=224.5

Q ss_pred             EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEec--CCCCcceeeee
Q 047728          113 IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKV--SSKDASIHKRV  186 (474)
Q Consensus       113 i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~  186 (474)
                      +..+.+++.++++++.|++|.+||..  +.+..+..+.. +..++++  +++|++++.|++|++||+  .+.+.....  
T Consensus       142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--  218 (543)
T 1nir_A          142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--  218 (543)
T ss_dssp             CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--
T ss_pred             ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--
Confidence            44466778899999999999999954  55666663333 8888887  779999999999999999  554332111  


Q ss_pred             cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC----CCCEEEEEE-CCCcEEEEEcCCcceeeeeeec
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE----DQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH  261 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~  261 (474)
                                                     .+...+..++|+|    ++++|++++ .+++|.+||..+++++..+..+
T Consensus       219 -------------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          219 -------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             -------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             -------------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence                                           1344578999999    999999988 4899999999999998888652


Q ss_pred             ----------C-cceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-
Q 047728          262 ----------D-DAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-  327 (474)
Q Consensus       262 ----------~-~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-  327 (474)
                                . ..+..+.+++++  .+++...++.|.+||+.......     .....+...+..++|+|++++|+++ 
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-----~~~i~~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT-----VTSIGAAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE-----EEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce-----eEEeccCcCccCceECCCCCEEEEEe
Confidence                      2 268899999987  67788889999999997654311     1122345668889999999987655 


Q ss_pred             cCCCcEEEeecCcccccceeee---ecceeeEEE-Eec-CCEEEEEe-CCCcEEEEECCC-------CceEEEEeecCCc
Q 047728          328 SSDGLVNFWERELNLSHGGVLR---GHKLAILCL-VTA-GNLVFSGS-ADMSICIWRRKE-------NEHICLSMLTGHS  394 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~~~~~~---~~~~~v~~~-~~~-~~~l~sgs-~dg~i~iwd~~~-------~~~~~~~~~~~h~  394 (474)
                      ..++.|.+||..+++....+..   .|......+ .++ +.+++++. .|++|.+||+.+       .+  ++.++.+|.
T Consensus       343 ~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~--~v~~l~~~g  420 (543)
T 1nir_A          343 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK--KVAELQGQG  420 (543)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS--EEEEEECSC
T ss_pred             cCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCe--EEEEEEcCC
Confidence            4688999999998865543332   254333333 566 56666765 689999999987       44  678899999


Q ss_pred             cceEEEEEeeCCccccccceEEEEEec-------CCCcEEEEEccCCCCCCCCCcccc---cccCCCCCCCccccCCCCC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGS-------LDKSVKMWRVSEQAPPLVSTTQQH---PLEGHGVAPNSLPYAPSFS  464 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s-------~Dg~i~vw~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~p~~s  464 (474)
                      +.+..++|+|+++        .|++++       .+++|.|||+.+.+..... ....   .+..+..    -.+++.|+
T Consensus       421 ~~~~~v~~~pdg~--------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~-~~v~~~~~~~~~~~----~~~~~~~~  487 (543)
T 1nir_A          421 GGSLFIKTHPKSS--------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-LPIAEWADLGEGAK----RVVQPEYN  487 (543)
T ss_dssp             SCCCCEECCTTCC--------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-ECHHHHHCCCSSCC----EEEEEEEC
T ss_pred             CCceEEEcCCCCC--------cEEEecCCCCCcccCceEEEEECCCCCCCeEE-eechhhcccCCCCC----ceEeccCC
Confidence            8999999999999        888887       2789999999987533110 0011   1223333    34556899


Q ss_pred             cCCceeec
Q 047728          465 SQGRICQK  472 (474)
Q Consensus       465 ~Dg~~l~~  472 (474)
                      |||+.+..
T Consensus       488 ~~g~~~~~  495 (543)
T 1nir_A          488 KRGDEVWF  495 (543)
T ss_dssp             SSSSEEEE
T ss_pred             CCCCEEEE
Confidence            99998763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=9e-24  Score=192.02  Aligned_cols=205  Identities=13%  Similarity=0.065  Sum_probs=138.4

Q ss_pred             ccCCeeEEEecCC----CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEee---CCCcEEEEEcc
Q 047728          219 HFDAISSLSMSED----QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGS---ADGTVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~---~dg~i~iwd~~  291 (474)
                      +...|+.|+++|+    ++.+++++.+  +.+|++.                      ++.++..+   .|+.|++|++.
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~V~~~~~s  165 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQVEVMTFA  165 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCEEEEEEEC
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCcEEEEEEC
Confidence            4445666666666    6666665533  5555443                      44333332   37777777774


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccceeeeecc---eee--EEEEecCC
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK---LAI--LCLVTAGN  363 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~~v--~~~~~~~~  363 (474)
                      ..++     .......|...++.++|++   ++..|++++.|++|++||+++++.+..+ .+|.   ..+  .+|+|++.
T Consensus       166 ~dG~-----~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL-~g~~~~v~~v~~vafSpdG~  239 (356)
T 2w18_A          166 EDGG-----GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM-HIDDSYQASVCHKAYSEMGL  239 (356)
T ss_dssp             TTSC-----EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE-ECCC---CCCEEEEEEETTE
T ss_pred             CCCc-----eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE-cCCCcceeeeEEEEECCCCC
Confidence            4332     2345557777888889998   7899999999999999999998766544 3332   122  46888888


Q ss_pred             EE------------EEEeCCCcEEEEECCCCceEEEEe---ecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728          364 LV------------FSGSADMSICIWRRKENEHICLSM---LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM  428 (474)
Q Consensus       364 ~l------------~sgs~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v  428 (474)
                      ++            ++|+.|++|++||..+++...+..   ..+|...+.+..++  +.        ++++++.|++|+|
T Consensus       240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~--------~lASgS~DgTIkI  309 (356)
T 2w18_A          240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH--------CAAAILTSGTIAI  309 (356)
T ss_dssp             EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT--------EEEEEETTSCEEE
T ss_pred             EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC--------EEEEEcCCCcEEE
Confidence            76            668899999999999887432222   14777665544444  55        8999999999999


Q ss_pred             EEccCCCCCCCCCcccccccCCCCCCCc-cccCCCCCcCCceeeccC
Q 047728          429 WRVSEQAPPLVSTTQQHPLEGHGVAPNS-LPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~p~~s~Dg~~l~~~s  474 (474)
                      ||+.++       ++.+.+.+|...+.+ +    +|||||++|+++|
T Consensus       310 WDl~tG-------k~l~tL~gH~~~vvs~v----afSPDG~~LaSGS  345 (356)
T 2w18_A          310 WDLLLG-------QCTALLPPVSDQHWSFV----KWSGTDSHLLAGQ  345 (356)
T ss_dssp             EETTTC-------SEEEEECCC--CCCCEE----EECSSSSEEEEEC
T ss_pred             EECCCC-------cEEEEecCCCCCeEEEE----EECCCCCEEEEEE
Confidence            999988       667778888876654 6    7889999999876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.3e-23  Score=203.04  Aligned_cols=259  Identities=11%  Similarity=-0.039  Sum_probs=197.2

Q ss_pred             eeeeeecCcEEEEEEc----------------CCEEEEeeCC------CcEEEEeCC-ccccccccCccCEEEEEec--C
Q 047728          104 GSLVREEGHIYSLAAA----------------GDLLYTGSDS------KNIRVWKNQ-REFSGFKSNSGLVKAIVIS--N  158 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~----------------~~~l~tgs~d------g~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~  158 (474)
                      ..+.+|...+.++++.                +..++.++.+      +.|++||.. .....+..|...|.+++|+  +
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg  190 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG  190 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC
Confidence            4577787777665543                5666666554      799999955 4566778899999999998  6


Q ss_pred             CEEEEEeCCC---eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE
Q 047728          159 EKIFSGHQDG---KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL  235 (474)
Q Consensus       159 ~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  235 (474)
                      ++|++++.++   .|++||+.+++...                                 +..|...+.+++|+|+++.|
T Consensus       191 ~~la~~s~~~~~~~i~~~d~~tg~~~~---------------------------------l~~~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          191 SKLAYVTFESGRSALVIQTLANGAVRQ---------------------------------VASFPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEE---------------------------------EECCSSCEEEEEECTTSSEE
T ss_pred             CEEEEEEecCCCcEEEEEECCCCcEEE---------------------------------eecCCCcccCEEEcCCCCEE
Confidence            7899999885   99999999876421                                 22377789999999999988


Q ss_pred             E-EEECCCc--EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC-CC--cEEEEEcccCCCceeeeeeeeeecc
Q 047728          236 Y-SASWDKT--FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-DG--TVKVWRRELQGKGTKHFFSQTLLKQ  308 (474)
Q Consensus       236 ~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~  308 (474)
                      + +++.++.  |++||+.+++. ..+..|...+.+++|+|++ .|++++. ++  .|.+||+.....       ..+..+
T Consensus       238 a~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-------~~l~~~  309 (415)
T 2hqs_A          238 AFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------QRITWE  309 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------EECCCS
T ss_pred             EEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-------EEEecC
Confidence            7 6666655  99999988775 5667788899999999999 6776665 45  566667764431       223345


Q ss_pred             cccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC---cEEEEECCCC
Q 047728          309 ECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM---SICIWRRKEN  382 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg---~i~iwd~~~~  382 (474)
                      ...+.+++|+|++++|++++.+   ..|.+||+.++... .+.........+++|+|++|++++.++   .|++||+..+
T Consensus       310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            6678999999999999988764   58999999877543 222223345577888999999988877   7999999866


Q ss_pred             ceEEEEeecCCccceEEEEEeeCCc
Q 047728          383 EHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       383 ~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      .   ...+..|.+.|.+++|+|...
T Consensus       389 ~---~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          389 F---KARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             C---EEECCCSSSEEEEEEECCCCC
T ss_pred             c---EEEeeCCCCCCcCCccccccc
Confidence            5   567888999999999999754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.1e-22  Score=188.59  Aligned_cols=271  Identities=8%  Similarity=0.133  Sum_probs=190.8

Q ss_pred             CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeC-CCeEEEEecCCCCc-ceeeeecccCccc
Q 047728          120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQ-DGKIRVWKVSSKDA-SIHKRVGTLPTFK  193 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~  193 (474)
                      +.++++++.++.|++||..  +....+..+...+ .++|+  ++++++++. ++.|.+||+.+++. ...          
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~----------   78 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA----------   78 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE----------
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe----------
Confidence            4467888889999999954  4444555555566 88887  556666655 89999999988765 211          


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCC---cEEEEEcCCcceeeeeeecCcceeEEEe
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDK---TFKVWRTSDYKCLESVIAHDDAVNSIVA  270 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~v~~  270 (474)
                                            +..+..+..+++|+|++++|+++..++   .|.+||+.+++.+..+.. ...+.+++|
T Consensus        79 ----------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~  135 (331)
T 3u4y_A           79 ----------------------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAI  135 (331)
T ss_dssp             ----------------------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEE
T ss_pred             ----------------------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEE
Confidence                                  122445555599999999999555553   899999999998887765 445689999


Q ss_pred             cCCC-eEE-EeeCCCc-EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecCcccc---
Q 047728          271 GFDG-LVF-TGSADGT-VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWERELNLS---  343 (474)
Q Consensus       271 ~~~~-~l~-~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~~~~~---  343 (474)
                      +|++ .++ +...++. |.+|++...+......  .........+..++|+|+++++++ +..++.|.+||+.++..   
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  213 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL  213 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence            9999 444 4455688 9999988543321111  222244556899999999996655 45688999999987765   


Q ss_pred             cceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCC----ccc---eEEEEEeeCCccccccceE
Q 047728          344 HGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGH----SGP---VKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       344 ~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h----~~~---v~~l~~~~~~~~~~~~~~~  415 (474)
                      ...+..+....-+++++++++++++. .++.|.+||..+++...+..+..+    ..+   ...++|+|+++        
T Consensus       214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--------  285 (331)
T 3u4y_A          214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET--------  285 (331)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS--------
T ss_pred             eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC--------
Confidence            43333333344578899999776655 578899999998875334443322    222   35689999998        


Q ss_pred             EE-EEecCCCcEEEEEccCC
Q 047728          416 IL-YSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       416 ~l-~s~s~Dg~i~vw~~~~~  434 (474)
                      +| +++..++.|++|++...
T Consensus       286 ~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          286 KLFISANISRELKVFTISGK  305 (331)
T ss_dssp             EEEEEETTTTEEEEEETTSC
T ss_pred             EEEEecCCCCcEEEEEecCC
Confidence            55 55566779999999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.5e-22  Score=190.27  Aligned_cols=271  Identities=11%  Similarity=0.203  Sum_probs=183.2

Q ss_pred             EEEEeeCCCcEEEEeCC--c--cccccccCccCEEEEEec--CCEEEEEeCC-CeEEEEecC--CCCcceeeeecccCcc
Q 047728          122 LLYTGSDSKNIRVWKNQ--R--EFSGFKSNSGLVKAIVIS--NEKIFSGHQD-GKIRVWKVS--SKDASIHKRVGTLPTF  192 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~--~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~  192 (474)
                      ++++++.|+.|++|+..  .  .......+...+.+++|+  +++|++++.+ +.|++|+++  +++.......      
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------   80 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------   80 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------
Confidence            44555789999999863  2  122223567788889997  6678888876 999999998  3332211111      


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcC---CcceeeeeeecCcceeEE
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTS---DYKCLESVIAHDDAVNSI  268 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~v  268 (474)
                                              . ....+.+++|+|++++|++++. ++.|.+||+.   ..+.+..+.. ...+.++
T Consensus        81 ------------------------~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~  134 (343)
T 1ri6_A           81 ------------------------A-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSA  134 (343)
T ss_dssp             ------------------------E-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCC
T ss_pred             ------------------------c-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEE
Confidence                                    1 1237889999999998877765 8889999994   3444444443 3458899


Q ss_pred             EecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCc--ccc
Q 047728          269 VAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWEREL--NLS  343 (474)
Q Consensus       269 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~  343 (474)
                      +|+|++ .+++++ .++.|++||+.....................+..++|+|++++++++ ..++.|.+||++.  +..
T Consensus       135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~  214 (343)
T 1ri6_A          135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI  214 (343)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred             EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence            999999 666666 89999999997533211110001222234578899999999977655 4789999999954  211


Q ss_pred             c-ceeee----ec----ceeeEEEEecCCEEEE-EeCCCcEEEEECC--CCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728          344 H-GGVLR----GH----KLAILCLVTAGNLVFS-GSADMSICIWRRK--ENEHICLSMLTGHSGPVKCLAVEKDDESLSR  411 (474)
Q Consensus       344 ~-~~~~~----~~----~~~v~~~~~~~~~l~s-gs~dg~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  411 (474)
                      . .....    ++    ....+++++++++|++ +..++.|.+||+.  ++....+..+..+.. +.+++|+|+++    
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~----  289 (343)
T 1ri6_A          215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK----  289 (343)
T ss_dssp             EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS----
T ss_pred             EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC----
Confidence            1 11111    11    1123778888988775 4478999999998  444334555555544 89999999998    


Q ss_pred             cceEEEEEec-CCCcEEEEEccC
Q 047728          412 EKRWILYSGS-LDKSVKMWRVSE  433 (474)
Q Consensus       412 ~~~~~l~s~s-~Dg~i~vw~~~~  433 (474)
                          +|++++ .|+.|.+|++..
T Consensus       290 ----~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          290 ----YLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             ----EEEEECTTTCEEEEEEEET
T ss_pred             ----EEEEecCCCCeEEEEEEcC
Confidence                666666 689999997763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=5.1e-23  Score=214.32  Aligned_cols=300  Identities=9%  Similarity=0.051  Sum_probs=209.6

Q ss_pred             cEEEEEE--cCCEEEEeeC-CC-----cEEEEeCC--ccccccccCc------------------------cCEEEEEec
Q 047728          112 HIYSLAA--AGDLLYTGSD-SK-----NIRVWKNQ--REFSGFKSNS------------------------GLVKAIVIS  157 (474)
Q Consensus       112 ~i~~~~~--~~~~l~tgs~-dg-----~v~vwd~~--~~~~~~~~h~------------------------~~V~~i~~~  157 (474)
                      .|.++++  +|++|++++. |+     .|++||..  +....+..+.                        ..|.+++|+
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            4666555  5899999998 88     89999954  2223333222                        237788888


Q ss_pred             --CCEEEEEeCCCeEEEEecCCC---CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728          158 --NEKIFSGHQDGKIRVWKVSSK---DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ  232 (474)
Q Consensus       158 --~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  232 (474)
                        +++|++++. +.|++||+.++   ...                                 .+..|...+.+++|+|||
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------------------------------~l~~~~~~~~~~~~SPDG  163 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQEGKAAVR---------------------------------QLTHGEGFATDAKLSPKG  163 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSSCSTTSCC---------------------------------BCCCSSSCEEEEEECTTS
T ss_pred             CCCCEEEEEeC-CcEEEEECCCCCcceEE---------------------------------EcccCCcccccccCCCCC
Confidence              668888886 89999999887   322                                 122367789999999999


Q ss_pred             CEEEEEECCCcEEEEEcCCcceeeeeeecCcc----------------eeEEEecCCC-eEEEeeCCC------------
Q 047728          233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDA----------------VNSIVAGFDG-LVFTGSADG------------  283 (474)
Q Consensus       233 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------------v~~v~~~~~~-~l~~~~~dg------------  283 (474)
                      ++|+.++ ++.|++||+.+++.......+...                +..+.|+||| .|++++.|+            
T Consensus       164 ~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~  242 (741)
T 2ecf_A          164 GFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY  242 (741)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred             CEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence            9999887 468999999988766554443332                4789999999 788777665            


Q ss_pred             ---------------------cEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-----CCcEEEe
Q 047728          284 ---------------------TVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-----DGLVNFW  336 (474)
Q Consensus       284 ---------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~v~  336 (474)
                                           .|.+||+.. +...    .......+...+..++| ||++.|++++.     +..|++|
T Consensus       243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~  317 (741)
T 2ecf_A          243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ----WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEV  317 (741)
T ss_dssp             SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE----EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEE
T ss_pred             CCcccceEeecCCCCCCCCeeEEEEEECCCCCceE----EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEE
Confidence                                 788888875 4321    01111246778999999 99999987654     5679999


Q ss_pred             ecCcccccceeeeecce------eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEE-EEeeCCccc
Q 047728          337 ERELNLSHGGVLRGHKL------AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL-AVEKDDESL  409 (474)
Q Consensus       337 d~~~~~~~~~~~~~~~~------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~  409 (474)
                      |+.++... .....+..      ....++++|+++++++.||.++||.+.....  ...+..|...|..+ .|+|+++. 
T Consensus       318 d~~~g~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~-  393 (741)
T 2ecf_A          318 TLASNQQR-VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGL-  393 (741)
T ss_dssp             ETTTCCEE-EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTE-
T ss_pred             ECCCCceE-EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCE-
Confidence            99887544 23333321      3467889999999999999888887753222  45677788888887 59999972 


Q ss_pred             cccceEEEEEecCCC--cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          410 SREKRWILYSGSLDK--SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                            ++++++.|+  .++||++.....      ....+.. ...+.    .++|||||+.++.
T Consensus       394 ------l~~~~~~~~~~~~~l~~~~~~g~------~~~~l~~-~~~~~----~~~~spdg~~l~~  441 (741)
T 2ecf_A          394 ------AYFRAGIESARESQIYAVPLQGG------QPQRLSK-APGMH----SASFARNASVYVD  441 (741)
T ss_dssp             ------EEEEECSSCTTCBEEEEEETTCC------CCEECCC-SCSEE----EEEECTTSSEEEE
T ss_pred             ------EEEEEeCCCCceEEEEEEEcCCC------Ceeeccc-CCCce----EEEECCCCCEEEE
Confidence                  445666666  899999975321      1222322 22233    4488999998764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=4.5e-23  Score=189.27  Aligned_cols=252  Identities=13%  Similarity=0.109  Sum_probs=181.2

Q ss_pred             EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCC
Q 047728          163 SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDK  242 (474)
Q Consensus       163 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg  242 (474)
                      .++.|+.|++||+.+++..                                 .+..|...|.+++|+|++++|++++ ++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~---------------------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~   62 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR---------------------------------VVWQTPELFEAPNWSPDGKYLLLNS-EG   62 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE---------------------------------EEEEESSCCEEEEECTTSSEEEEEE-TT
T ss_pred             CCCcceeEEEEeCCCCcee---------------------------------eeccCCcceEeeEECCCCCEEEEEc-CC
Confidence            3467899999999876542                                 1234788999999999999999987 78


Q ss_pred             cEEEEEcCC-cceeeeeeec-CcceeEEEecCCC-eEEEee--CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEE
Q 047728          243 TFKVWRTSD-YKCLESVIAH-DDAVNSIVAGFDG-LVFTGS--ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI  317 (474)
Q Consensus       243 ~i~iwd~~~-~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  317 (474)
                      .|++||+.+ ++.......+ ...+.+++|+|++ .|++++  .++...||.++.....     ...+ .....+..++|
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~~-~~~~~~~~~~~  136 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-----PRLM-TKNLPSYWHGW  136 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-----CEEC-CSSSSEEEEEE
T ss_pred             eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-----eEEe-ecCCCccceEE
Confidence            999999998 8777666555 3678999999999 777777  4466777766543321     1122 22334889999


Q ss_pred             cCCCCEEE-EEcCCCcEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEe-CCCcEEEEECC-CCceEEEEeecC
Q 047728          318 SPDAAIVY-CGSSDGLVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGS-ADMSICIWRRK-ENEHICLSMLTG  392 (474)
Q Consensus       318 ~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs-~dg~i~iwd~~-~~~~~~~~~~~~  392 (474)
                      +|+++.|+ ++..++.+.+|+++........+..+...  ..++++++++|+.++ .++.++||++. ...  ....+..
T Consensus       137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~  214 (297)
T 2ojh_A          137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--SVERITD  214 (297)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CEEECCC
T ss_pred             CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC--CcEEEec
Confidence            99999877 67789999999864332222333344433  456677899887766 58999999886 333  2456777


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEecCC-----------CcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSGSLD-----------KSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP  461 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p  461 (474)
                      |...+..++|+|+++        +|+.++.+           +.|.+|++.+++.     .....+.+|...+..+    
T Consensus       215 ~~~~~~~~~~s~dg~--------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~~~~----  277 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGD--------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-----ETLFDLFGGQGTMNSP----  277 (297)
T ss_dssp             CSEEEEEEEECTTSS--------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-----EEEEEEEESTTTSCSC----
T ss_pred             CCcccCCeEECCCCC--------EEEEEEcCCCCCcccccCceEEEEEecCCCCc-----eeeeccCCCCcccccc----
Confidence            888999999999998        77777765           5699999987632     2233344566666666    


Q ss_pred             CCCcCCceeecc
Q 047728          462 SFSSQGRICQKR  473 (474)
Q Consensus       462 ~~s~Dg~~l~~~  473 (474)
                      +|+|||+.|+..
T Consensus       278 ~~spdg~~l~~~  289 (297)
T 2ojh_A          278 NWSPDGDEFAYV  289 (297)
T ss_dssp             CBCTTSSEEEEE
T ss_pred             eECCCCCEEEEE
Confidence            889999988754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.4e-23  Score=214.23  Aligned_cols=308  Identities=10%  Similarity=0.041  Sum_probs=199.8

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCcc---CEEEEEec--CCEEEEEeCC---------CeEEEEecCCCC
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSG---LVKAIVIS--NEKIFSGHQD---------GKIRVWKVSSKD  179 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~---~V~~i~~~--~~~l~s~~~d---------g~i~vwd~~~~~  179 (474)
                      ++++|+++++ +.||+|++||..  +....+..|..   .|.+++|+  +++|++++.+         +.|.+||+.+++
T Consensus        24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  102 (723)
T 1xfd_A           24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (723)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc
Confidence            3445787766 689999999843  44445555554   48899998  6789988764         788899999876


Q ss_pred             cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728          180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI  259 (474)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  259 (474)
                      ...   +..                           ..+|...+..++|+|||+.|+.++. +.|++||+.+++......
T Consensus       103 ~~~---l~~---------------------------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A          103 PQS---LDP---------------------------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             CEE---CCC---------------------------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             eEe---ccC---------------------------CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec
Confidence            421   110                           0125556889999999999999886 789999999888766555


Q ss_pred             ecCcce------------------eEEEecCCC-eEEEeeCCC----------------------------------cEE
Q 047728          260 AHDDAV------------------NSIVAGFDG-LVFTGSADG----------------------------------TVK  286 (474)
Q Consensus       260 ~~~~~v------------------~~v~~~~~~-~l~~~~~dg----------------------------------~i~  286 (474)
                      .+...+                  .+++|+||| .|++++.|+                                  .|+
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~  231 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH  231 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence            444333                  789999999 777776543                                  788


Q ss_pred             EEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC----CCcEEEeecCcccccceeeeecce------eeE
Q 047728          287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS----DGLVNFWERELNLSHGGVLRGHKL------AIL  356 (474)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~------~v~  356 (474)
                      +||+.................+...+..++|+||+++|++...    +..|++||+.++.........+..      ...
T Consensus       232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             EEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred             EEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence            8988754421111000111223667999999999998876643    357999999877544322222222      246


Q ss_pred             EEEecCCEEEE--EeCCC------cEEEEE-CCCCceEEEEeecCCccceEE-EEEeeCCccccccceEEEEEe-cCC--
Q 047728          357 CLVTAGNLVFS--GSADM------SICIWR-RKENEHICLSMLTGHSGPVKC-LAVEKDDESLSREKRWILYSG-SLD--  423 (474)
Q Consensus       357 ~~~~~~~~l~s--gs~dg------~i~iwd-~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~~~~l~s~-s~D--  423 (474)
                      .++++|+.|+.  +..++      .|.+|| ..+++..+...+..+...+.. ++|+|+++        .|+.. ..+  
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~--------~l~~~~~~~~~  383 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN--------KIYFLSTEDLP  383 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT--------EEEEEESSSCT
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC--------EEEEEEcCCCC
Confidence            78999997664  45667      577777 344331012234433344554 69999998        66544 444  


Q ss_pred             CcEEEEEccCCCCCCCCCcccccccC---CCCCCCccccCCCCCcCCceeec
Q 047728          424 KSVKMWRVSEQAPPLVSTTQQHPLEG---HGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       424 g~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      +.++||++......     ....+..   |...+..+    +|||||+.++.
T Consensus       384 ~~~~l~~~~~~~~~-----~~~~l~~~~~~~~~~~~~----~~spdg~~l~~  426 (723)
T 1xfd_A          384 RRRQLYSANTVGNF-----NRQCLSCDLVENCTYFSA----SFSHSMDFFLL  426 (723)
T ss_dssp             TCCEEEEECSSTTC-----CCBCSSTTSSSSCCCCEE----EECTTSSEEEE
T ss_pred             cceEEEEEeCCCCC-----CcceecccccCCCCeEEE----EECCCCCEEEE
Confidence            88999999754211     1111221   34445555    78899987763

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=3.1e-22  Score=183.70  Aligned_cols=252  Identities=13%  Similarity=0.089  Sum_probs=182.7

Q ss_pred             EeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC-CCcceeeeecccCccceeeeeec
Q 047728          125 TGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS-KDASIHKRVGTLPTFKDFIKCSM  200 (474)
Q Consensus       125 tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  200 (474)
                      .++.|+.|++||.. .....+..|...|.+++|+  +++|++++ ++.|++||+.+ ++.....                
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~----------------   79 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD----------------   79 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC----------------
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec----------------
Confidence            45678999999965 3445566788999999998  56788776 78999999988 6543211                


Q ss_pred             CCCCeEEEeeeccceeeec-cCCeeEEEecCCCCEEEEEE--CCCcEEEE--EcCCcceeeeeeecCcceeEEEecCCC-
Q 047728          201 KPSNYIEVRRHRNGLWIKH-FDAISSLSMSEDQNLLYSAS--WDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDG-  274 (474)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s--~dg~i~iw--d~~~~~~~~~~~~~~~~v~~v~~~~~~-  274 (474)
                                      ..+ ...+.+++|+|++++|++++  .++.+.||  +..+++ ...+.. ...+..++|+|++ 
T Consensus        80 ----------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~  141 (297)
T 2ojh_A           80 ----------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGK  141 (297)
T ss_dssp             ----------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSS
T ss_pred             ----------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCC
Confidence                            112 46788999999999999998  33445555  545544 334433 3348889999999 


Q ss_pred             eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeeecc
Q 047728          275 LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRGHK  352 (474)
Q Consensus       275 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~  352 (474)
                      .++ ++..++.+++|+++....     ....+..+...+.+++|+|+++.|++++ .++.+.+|+++........+..+.
T Consensus       142 ~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  216 (297)
T 2ojh_A          142 SFTYCGIRDQVFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA  216 (297)
T ss_dssp             EEEEEEEETTEEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred             EEEEEECCCCceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence            444 788899999999764332     1234456677899999999999887665 588999998763322223444444


Q ss_pred             eee--EEEEecCCEEEEEeCC-----------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728          353 LAI--LCLVTAGNLVFSGSAD-----------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS  419 (474)
Q Consensus       353 ~~v--~~~~~~~~~l~sgs~d-----------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s  419 (474)
                      ..+  .++++++++|++++.+           +.|++||+.+++...+..+.+|...+.+++|+|+++        .|++
T Consensus       217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~~  288 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD--------EFAY  288 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS--------EEEE
T ss_pred             cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCC--------EEEE
Confidence            444  5677889999888866           569999999887655666668888999999999998        6776


Q ss_pred             ecCCC
Q 047728          420 GSLDK  424 (474)
Q Consensus       420 ~s~Dg  424 (474)
                      ++.|.
T Consensus       289 ~~~~~  293 (297)
T 2ojh_A          289 VRYFP  293 (297)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            66543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=1.3e-21  Score=210.86  Aligned_cols=334  Identities=7%  Similarity=0.009  Sum_probs=224.9

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCC------CcEEEEeCC-ccccccccCccCE-------EEEEec--CCEEEEE
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDS------KNIRVWKNQ-REFSGFKSNSGLV-------KAIVIS--NEKIFSG  164 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~d------g~v~vwd~~-~~~~~~~~h~~~V-------~~i~~~--~~~l~s~  164 (474)
                      ...|..|.+.+.+++++  |++||.++.+      ..|++|+.. .....+..|...+       ..++|+  ++.++++
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~  124 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  124 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence            45677899999988775  8899987643      378999854 3466778888888       899998  5566777


Q ss_pred             eCC------CeEEEEecCCCCcceeeeecc-----cC------------------------------c------------
Q 047728          165 HQD------GKIRVWKVSSKDASIHKRVGT-----LP------------------------------T------------  191 (474)
Q Consensus       165 ~~d------g~i~vwd~~~~~~~~~~~~~~-----~~------------------------------~------------  191 (474)
                      +.+      ..|.+|++.++..........     .+                              .            
T Consensus       125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~  204 (1045)
T 1k32_A          125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST  204 (1045)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred             CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence            654      357778876654321100000     00                              0            


Q ss_pred             --------cceeeeeecCCCCeEEEee-----eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          192 --------FKDFIKCSMKPSNYIEVRR-----HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       192 --------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                              ...+.... .......++.     .....+..|. .+...+|+|+++.|+.+. ++.|++||+...+ +..+
T Consensus       205 ~v~~~~~s~d~l~~~~-~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l  280 (1045)
T 1k32_A          205 HVSSPVIVGHRIYFIT-DIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKI  280 (1045)
T ss_dssp             CCEEEEEETTEEEEEE-CTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEEC
T ss_pred             cccceEEeCCEEEEEE-eccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeee
Confidence                    00000000 0001111111     1112222333 466789999999888874 8899999985433 3344


Q ss_pred             ee-----------cCcceeEEEec-CCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc-cEEEEEEcCCCCEE
Q 047728          259 IA-----------HDDAVNSIVAG-FDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC-AVTALAISPDAAIV  324 (474)
Q Consensus       259 ~~-----------~~~~v~~v~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l  324 (474)
                      ..           |...+.+++|+ |++ .+++++ ++.|.+|++....       ...+..+.. .+..++|+ +++.|
T Consensus       281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred             ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeE
Confidence            43           34578999999 999 666666 8899999986432       122345555 79999999 99999


Q ss_pred             EEEcCCCcEE-EeecCcccccceeeeecce--eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEE
Q 047728          325 YCGSSDGLVN-FWERELNLSHGGVLRGHKL--AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA  401 (474)
Q Consensus       325 ~~~~~dg~i~-v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~  401 (474)
                      +.++.++.+. +||+..+... .+. +|..  ...+++|+|++|++++.++.|++||+.+++.  .....+|...+.+++
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v~~~~  427 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMITDFT  427 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCCEE
T ss_pred             EEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCCCCccceE
Confidence            9988888888 8998766432 222 4433  4467788999999999999999999998873  344557899999999


Q ss_pred             EeeCCccccccceEEEEEecCCC----------cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          402 VEKDDESLSREKRWILYSGSLDK----------SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       402 ~~~~~~~~~~~~~~~l~s~s~Dg----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      |+||++        +|++++.++          .|++||+.++.        ...+..|...+..    ++|+|||+.|+
T Consensus       428 ~SpDG~--------~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--------~~~l~~~~~~~~~----~~~spdG~~l~  487 (1045)
T 1k32_A          428 ISDNSR--------FIAYGFPLKHGETDGYVMQAIHVYDMEGRK--------IFAATTENSHDYA----PAFDADSKNLY  487 (1045)
T ss_dssp             ECTTSC--------EEEEEEEECSSTTCSCCEEEEEEEETTTTE--------EEECSCSSSBEEE----EEECTTSCEEE
T ss_pred             ECCCCC--------eEEEEecCccccccCCCCCeEEEEECCCCc--------EEEeeCCCcccCC----ceEcCCCCEEE
Confidence            999999        787776644          89999998762        2344455444444    58899999776


Q ss_pred             cc
Q 047728          472 KR  473 (474)
Q Consensus       472 ~~  473 (474)
                      ..
T Consensus       488 ~~  489 (1045)
T 1k32_A          488 YL  489 (1045)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=4.9e-21  Score=190.76  Aligned_cols=269  Identities=11%  Similarity=0.029  Sum_probs=190.3

Q ss_pred             cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728          157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY  236 (474)
Q Consensus       157 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  236 (474)
                      .+..+++++.|++|.+||..+++.......                               ++.  +..++|+|++++|+
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-------------------------------g~~--~~~v~~spdg~~l~  194 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDT-------------------------------GYA--VHISRMSASGRYLL  194 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEEC-------------------------------STT--EEEEEECTTSCEEE
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEec-------------------------------Ccc--cceEEECCCCCEEE
Confidence            366788899999999999998876432211                               132  88999999999999


Q ss_pred             EEECCCcEEEEEc--CCcceeeeeeecCcceeEEEecC----CC-eEEEee-CCCcEEEEEcccCCCceeeeeeee-e--
Q 047728          237 SASWDKTFKVWRT--SDYKCLESVIAHDDAVNSIVAGF----DG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQT-L--  305 (474)
Q Consensus       237 s~s~dg~i~iwd~--~~~~~~~~~~~~~~~v~~v~~~~----~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-~--  305 (474)
                      +++.|++|.+||+  .+++++..+.. ...+..++|+|    ++ ++++++ .+++|.+||..+............ .  
T Consensus       195 v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          195 VIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence            9999999999999  88888888874 55679999999    88 777776 489999999875442111100000 0  


Q ss_pred             --ecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccc--eeeeecceeeEEEEecCCEEEEEe-CCCcEEEEEC
Q 047728          306 --LKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHG--GVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRR  379 (474)
Q Consensus       306 --~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~  379 (474)
                        ......+..+.++|++. ++++...++.|.+||..+.....  .+..+....-..|+++++++++++ .+++|.+||.
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~  353 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS  353 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEEC
Confidence              01133789999999765 55667788999999998764433  111122233477889999877655 6899999999


Q ss_pred             CCCceEEEEeecC----CccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCCCCCCCcccccccCCCCCC
Q 047728          380 KENEHICLSMLTG----HSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAP  454 (474)
Q Consensus       380 ~~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  454 (474)
                      .+++.  +..+..    |.+....+ ++|++..       +++++. .|++|.||++.+...+....+..+.+.+|...+
T Consensus       354 ~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~-------~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~  423 (543)
T 1nir_A          354 KDRRL--SALVDVGKTPHPGRGANF-VHPKYGP-------VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS  423 (543)
T ss_dssp             TTTEE--EEEEECSSSBCCTTCEEE-EETTTEE-------EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred             CCCeE--EEeeccCCCCCCCCCccc-CCCCCcc-------EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc
Confidence            99873  444443    55444443 4676332       677775 689999999987433322236777888888777


Q ss_pred             CccccCCCCCcCCceeecc
Q 047728          455 NSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       455 ~~l~~~p~~s~Dg~~l~~~  473 (474)
                      ..+    +|+|||+.|...
T Consensus       424 ~~v----~~~pdg~~l~v~  438 (543)
T 1nir_A          424 LFI----KTHPKSSHLYVD  438 (543)
T ss_dssp             CCE----ECCTTCCEEEEC
T ss_pred             eEE----EcCCCCCcEEEe
Confidence            777    678888887654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=5.9e-22  Score=205.18  Aligned_cols=290  Identities=12%  Similarity=0.097  Sum_probs=197.2

Q ss_pred             CCEEEEeeCCCcEEEEeCC--ccc-cccccCc-----------------cCEEEEEecCC-EEEEEeCCCeEEEEecCCC
Q 047728          120 GDLLYTGSDSKNIRVWKNQ--REF-SGFKSNS-----------------GLVKAIVISNE-KIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~--~~~-~~~~~h~-----------------~~V~~i~~~~~-~l~s~~~dg~i~vwd~~~~  178 (474)
                      |+.+++++.|+ | +||..  +.+ ..+..|.                 ..|.+++|+++ .++.+ .++.|++||+.++
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~  111 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR  111 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence            77777777788 8 99954  221 3333332                 46999999844 44444 5699999999876


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-----cc
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-----YK  253 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~  253 (474)
                      +...                                 +..+...+.+++|+|||+.|+.+ .|+.|++||+.+     ++
T Consensus       112 ~~~~---------------------------------l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A          112 KVTY---------------------------------LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             EEEE---------------------------------EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             ceEE---------------------------------ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            4321                                 12255678889999999999985 679999999998     77


Q ss_pred             eeeeeeecCcc--------------eeEEEecCCC-eEEEee---------------------------------CCCcE
Q 047728          254 CLESVIAHDDA--------------VNSIVAGFDG-LVFTGS---------------------------------ADGTV  285 (474)
Q Consensus       254 ~~~~~~~~~~~--------------v~~v~~~~~~-~l~~~~---------------------------------~dg~i  285 (474)
                      .......+...              +.++.|+||+ .|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            66544443332              4899999999 777776                                 44679


Q ss_pred             EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccccceeeee-cce-----e
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGVLRG-HKL-----A  354 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~-~~~-----~  354 (474)
                      ++||+..+..    ........+...+.+++|+|+++.|++++.++     .|.+||+.++......... +..     .
T Consensus       238 ~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          238 GIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred             EEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence            9999875431    01111124667899999999999999887765     8999999887333333322 221     2


Q ss_pred             eEEEEe--cCCEEEEEeCCCcEEEEECC-CCceEEEEeecCCccceEE-EEEeeCCccccccceEEEEEecCCC----cE
Q 047728          355 ILCLVT--AGNLVFSGSADMSICIWRRK-ENEHICLSMLTGHSGPVKC-LAVEKDDESLSREKRWILYSGSLDK----SV  426 (474)
Q Consensus       355 v~~~~~--~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~~~~l~s~s~Dg----~i  426 (474)
                      ...+++  +|+++++++.|+.++||++. .+.  .+..+..|...+.. ++|+|+++.       ++++++.++    .|
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~spdg~~-------l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFDPKGTR-------LYFESTEASPLERHF  384 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEETTSC--EEEECCCSSSCEEEEEEECTTSSE-------EEEEESSSCTTCBEE
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEECCCC--EEEecCCCCeEEEeeeEEcCCCCE-------EEEEecCCCCceEEE
Confidence            358889  99999999999999999876 343  35567778878877 799999982       445555555    45


Q ss_pred             EEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       427 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      ..|++.++..        ..+. +...+.+    ++|||||+.++.
T Consensus       385 ~~~d~~~~~~--------~~l~-~~~~~~~----~~~spdg~~l~~  417 (706)
T 2z3z_A          385 YCIDIKGGKT--------KDLT-PESGMHR----TQLSPDGSAIID  417 (706)
T ss_dssp             EEEETTCCCC--------EESC-CSSSEEE----EEECTTSSEEEE
T ss_pred             EEEEcCCCCc--------eecc-CCCceEE----EEECCCCCEEEE
Confidence            5555555421        1121 3333444    488999997764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=1.4e-20  Score=176.69  Aligned_cols=262  Identities=15%  Similarity=0.229  Sum_probs=170.3

Q ss_pred             EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728          161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW  240 (474)
Q Consensus       161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  240 (474)
                      +++++.|+.|++|+++.........                              ...+...+.+++|+|++++|++++.
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~spdg~~l~~~~~   57 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQ------------------------------VVDVPGQVQPMVVSPDKRYLYVGVR   57 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEE------------------------------EEECSSCCCCEEECTTSSEEEEEET
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEee------------------------------eEecCCCCceEEECCCCCEEEEeec
Confidence            4444789999999996422111110                              1226678899999999999999888


Q ss_pred             C-CcEEEEEcC--Ccc--eeeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728          241 D-KTFKVWRTS--DYK--CLESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT  313 (474)
Q Consensus       241 d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  313 (474)
                      + +.|.+|++.  +++  .+..+..+. .+..++|+|++ .+++++ .++.|.+||+. ...  ....... ......+.
T Consensus        58 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~--~~~~~~~-~~~~~~~~  132 (343)
T 1ri6_A           58 PEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGL--PVGVVDV-VEGLDGCH  132 (343)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTE--EEEEEEE-ECCCTTBC
T ss_pred             CCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCc--ccccccc-ccCCCCce
Confidence            7 999999997  444  334444434 78999999999 565554 58899999995 111  1112222 23344688


Q ss_pred             EEEEcCCCCEEEEEc-CCCcEEEeecCc-ccccce---eee---ecceeeEEEEecCCEEEEEe-CCCcEEEEECCC--C
Q 047728          314 ALAISPDAAIVYCGS-SDGLVNFWEREL-NLSHGG---VLR---GHKLAILCLVTAGNLVFSGS-ADMSICIWRRKE--N  382 (474)
Q Consensus       314 ~l~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~---~~~---~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~--~  382 (474)
                      +++|+|+++++++++ .++.|.+||+.. +.....   ...   +.....++++++++++++++ .++.|.+||+..  +
T Consensus       133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g  212 (343)
T 1ri6_A          133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  212 (343)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            999999999888777 899999999986 322110   111   11233467888999776555 889999999953  4


Q ss_pred             ceEEEEeec---C-C--ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728          383 EHICLSMLT---G-H--SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS  456 (474)
Q Consensus       383 ~~~~~~~~~---~-h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  456 (474)
                      +........   . +  ...+..++|+|+++.       +++++..|+.|++|++.......   .....+..+.. +..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-------l~v~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~-~~~  281 (343)
T 1ri6_A          213 NIECVQTLDMMPENFSDTRWAADIHITPDGRH-------LYACDRTASLITVFSVSEDGSVL---SKEGFQPTETQ-PRG  281 (343)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTSCCE---EEEEEEECSSS-CCC
T ss_pred             cEEEEeeccccCccccccCCccceEECCCCCE-------EEEEecCCCEEEEEEEcCCCCce---EEeeeecCCCc-cce
Confidence            322222222   1 1  235778999999972       34466689999999997421111   22223333333 666


Q ss_pred             cccCCCCCcCCceeec
Q 047728          457 LPYAPSFSSQGRICQK  472 (474)
Q Consensus       457 l~~~p~~s~Dg~~l~~  472 (474)
                      +    +|+|||+.|..
T Consensus       282 ~----~~s~dg~~l~~  293 (343)
T 1ri6_A          282 F----NVDHSGKYLIA  293 (343)
T ss_dssp             E----EECTTSSEEEE
T ss_pred             E----EECCCCCEEEE
Confidence            6    67888886543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=5.9e-21  Score=205.78  Aligned_cols=304  Identities=11%  Similarity=0.063  Sum_probs=204.1

Q ss_pred             cCcEEEEEEcCCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC------CeEEEEecCCCCc
Q 047728          110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD------GKIRVWKVSSKDA  180 (474)
Q Consensus       110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d------g~i~vwd~~~~~~  180 (474)
                      .+.+.+.+++++.|+.++. +.|++|+.. .....+..|...+.+++|+  +++|++++.+      ..|++|++.+++.
T Consensus        14 ~~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~   92 (1045)
T 1k32_A           14 PNLLLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   92 (1045)
T ss_dssp             CCCCEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             cceEeCcEEeCCEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe
Confidence            4567788888899988876 689999964 4566778899999999998  6788877643      3799999987653


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe-------eEEEecCCCCEEEEEECC------CcEEEE
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI-------SSLSMSEDQNLLYSASWD------KTFKVW  247 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-------~~l~~~~~~~~l~s~s~d------g~i~iw  247 (474)
                      ..   +                              ..|...+       ..++|+||++++++++.+      ..|.+|
T Consensus        93 ~~---l------------------------------t~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~  139 (1045)
T 1k32_A           93 KR---I------------------------------TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRV  139 (1045)
T ss_dssp             EE---C------------------------------CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred             EE---c------------------------------ccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEE
Confidence            21   1                              1133333       455555555544444322      234444


Q ss_pred             EcCCcc-------------------------------------------------eeeeeeecCcceeEEEecCCCeEEE
Q 047728          248 RTSDYK-------------------------------------------------CLESVIAHDDAVNSIVAGFDGLVFT  278 (474)
Q Consensus       248 d~~~~~-------------------------------------------------~~~~~~~~~~~v~~v~~~~~~~l~~  278 (474)
                      |+.+++                                                 ....+..|...+.++.|+++..+++
T Consensus       140 ~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~  219 (1045)
T 1k32_A          140 ENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFI  219 (1045)
T ss_dssp             EGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEE
T ss_pred             ECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEE
Confidence            443322                                                 2233456778888899988866677


Q ss_pred             eeCCCcEEEEEcccCCCceeee----------e------------------------eeeeec-----------ccccEE
Q 047728          279 GSADGTVKVWRRELQGKGTKHF----------F------------------------SQTLLK-----------QECAVT  313 (474)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~----------~------------------------~~~~~~-----------~~~~v~  313 (474)
                      ++.++.++||.+..........          .                        ...+..           +...+.
T Consensus       220 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~  299 (1045)
T 1k32_A          220 TDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF  299 (1045)
T ss_dssp             ECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG
T ss_pred             EeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccc
Confidence            8888999999865422110000          0                        000000           122577


Q ss_pred             EEEEc-CCCCEEEEEcCCCcEEEeecCcccccceeeeecce-ee--EEEEecCCEEEEEeCCCcEE-EEECCCCceEEEE
Q 047728          314 ALAIS-PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL-AI--LCLVTAGNLVFSGSADMSIC-IWRRKENEHICLS  388 (474)
Q Consensus       314 ~l~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-~v--~~~~~~~~~l~sgs~dg~i~-iwd~~~~~~~~~~  388 (474)
                      +++|+ |+++.|++++ ++.|.+|+...+...  .+..|.. .+  .+++ +++.|+.++.++.+. +||+.+++.   .
T Consensus       300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~---~  372 (1045)
T 1k32_A          300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA---E  372 (1045)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE---E
T ss_pred             eeeecCCCCCEEEEEE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc---e
Confidence            88888 8888887776 778888888765432  1223333 33  4556 788899988888888 999988763   3


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR  468 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~  468 (474)
                      .+.+|...+..++|+||++        +|++++.++.|++||+.+++       ....+.+|...+.++    +|||||+
T Consensus       373 ~l~~~~~~~~~~~~SpDG~--------~la~~~~~~~v~~~d~~tg~-------~~~~~~~~~~~v~~~----~~SpDG~  433 (1045)
T 1k32_A          373 KFEENLGNVFAMGVDRNGK--------FAVVANDRFEIMTVDLETGK-------PTVIERSREAMITDF----TISDNSR  433 (1045)
T ss_dssp             ECCCCCCSEEEEEECTTSS--------EEEEEETTSEEEEEETTTCC-------EEEEEECSSSCCCCE----EECTTSC
T ss_pred             EecCCccceeeeEECCCCC--------EEEEECCCCeEEEEECCCCc-------eEEeccCCCCCccce----EECCCCC
Confidence            4447888999999999999        89999999999999998773       223344677777766    7899999


Q ss_pred             eeecc
Q 047728          469 ICQKR  473 (474)
Q Consensus       469 ~l~~~  473 (474)
                      .|+..
T Consensus       434 ~la~~  438 (1045)
T 1k32_A          434 FIAYG  438 (1045)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=8.8e-21  Score=177.64  Aligned_cols=265  Identities=9%  Similarity=0.032  Sum_probs=184.6

Q ss_pred             CEEEEeeCCCcEEEEeCC--ccccccccCc-c-CEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728          121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNS-G-LVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~-~-~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      ++|++++.++.|++||..  +.+..+.... . .+..++|+  ++++ +++..++.|.+||+.+++..........    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence            578999999999999964  3333343222 1 47788887  4455 5566788999999988765432221100    


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------------CCCcEEEEEcCCcceeeeeeec
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------------WDKTFKVWRTSDYKCLESVIAH  261 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~  261 (474)
                                             ..|...+.+++|+|++++|+++.            .++.|.+||+.+++.+..+.. 
T Consensus        78 -----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-  133 (337)
T 1pby_B           78 -----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             -----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             -----------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence                                   00233567899999999999886            579999999999888877765 


Q ss_pred             CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---------
Q 047728          262 DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---------  331 (474)
Q Consensus       262 ~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---------  331 (474)
                      ...+.+++|+|++ .++++  ++.|.+||+.....      ......+. ....+.|+|++..+++.+..+         
T Consensus       134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL------VEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE------EEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE------eeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeec
Confidence            5567889999999 56666  68999999875432      11111111 001237889888766554333         


Q ss_pred             ---------------cEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728          332 ---------------LVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS  394 (474)
Q Consensus       332 ---------------~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~  394 (474)
                                     .|.+||+.++.........+...  .+++++++++++++  ++.|.+||+.+++..  ..+.. .
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~--~~~~~-~  279 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI--KRVPL-P  279 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE--EEEEC-S
T ss_pred             cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc--ceecC-C
Confidence                           46889998776542223333323  37778899999988  799999999988743  33432 3


Q ss_pred             cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ..+.+++|+|+++        +|++++.|+.|++||+.+++
T Consensus       280 ~~~~~~~~s~dg~--------~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          280 HSYYSVNVSTDGS--------TVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             SCCCEEEECTTSC--------EEEEESBSSEEEEEETTTCC
T ss_pred             CceeeEEECCCCC--------EEEEEcCCCcEEEEECcCCc
Confidence            4678999999998        78888889999999998873

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=4.6e-20  Score=174.07  Aligned_cols=262  Identities=10%  Similarity=0.094  Sum_probs=183.1

Q ss_pred             ccCEEEEEec--CCEEEEEeC-------CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          148 SGLVKAIVIS--NEKIFSGHQ-------DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      ...+..++++  ++++++++.       ++.|.+||..+++......                                 
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---------------------------------   86 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH---------------------------------   86 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------------------
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------------------
Confidence            3456677776  456776663       5689999998876543222                                 


Q ss_pred             ccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcc---------eeEEEecCCC-eEEEee--CCCcE
Q 047728          219 HFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDA---------VNSIVAGFDG-LVFTGS--ADGTV  285 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~v~~~~~~-~l~~~~--~dg~i  285 (474)
                      ....+..++|+|++++++++ ..++.|.+||..+++.+..+..+...         +.+++++|++ .+++++  .++.|
T Consensus        87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i  166 (353)
T 3vgz_A           87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI  166 (353)
T ss_dssp             ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred             cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence            22346788999999966555 45799999999999988887765432         6889999998 555554  58889


Q ss_pred             EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee---ecc--eeeEEEEe
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GHK--LAILCLVT  360 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~--~~v~~~~~  360 (474)
                      .+||+.....      ......+...+..++|+|+++++++++.++.|.+||+.++........   ++.  ...+++++
T Consensus       167 ~~~d~~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          167 WVVDGGNIKL------KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             EEEETTTTEE------EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             EEEcCCCCce------EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence            9999875432      223333455578899999999999999999999999988765543332   122  23367888


Q ss_pred             cCCEEEEEeC-CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728          361 AGNLVFSGSA-DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV  439 (474)
Q Consensus       361 ~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~  439 (474)
                      +++++++++. ++.|.+||..+++..  ..+....  ...++|+|+++.       ++++...++.|.+||+.+++    
T Consensus       241 dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~--~~~~~~s~dg~~-------l~v~~~~~~~v~~~d~~~~~----  305 (353)
T 3vgz_A          241 ARQRAFITDSKAAEVLVVDTRNGNIL--AKVAAPE--SLAVLFNPARNE-------AYVTHRQAGKVSVIDAKSYK----  305 (353)
T ss_dssp             TTTEEEEEESSSSEEEEEETTTCCEE--EEEECSS--CCCEEEETTTTE-------EEEEETTTTEEEEEETTTTE----
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEE--EEEEcCC--CceEEECCCCCE-------EEEEECCCCeEEEEECCCCe----
Confidence            9997777665 499999999988743  3333322  257999999883       45555579999999998763    


Q ss_pred             CCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          440 STTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       440 ~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                         ....+... ..+.++    +|+|||+.+.
T Consensus       306 ---~~~~~~~~-~~~~~~----~~s~dg~~l~  329 (353)
T 3vgz_A          306 ---VVKTFDTP-THPNSL----ALSADGKTLY  329 (353)
T ss_dssp             ---EEEEEECC-SEEEEE----EECTTSCEEE
T ss_pred             ---EEEEEecC-CCCCeE----EEcCCCCEEE
Confidence               22222222 234444    7899998543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=6.3e-21  Score=198.55  Aligned_cols=287  Identities=10%  Similarity=0.039  Sum_probs=188.6

Q ss_pred             ccCEEEEEec--CCEEEEEeC-CC-----eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          148 SGLVKAIVIS--NEKIFSGHQ-DG-----KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      ...|..++|+  +++|++++. |+     .|++||+.+++................+..  ....    .+ +...+ ..
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~--~~~~----~~-~~~~~-~~  107 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSD--EEKA----RR-ERQRI-AA  107 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------C
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccc--hhhh----hh-hhhhh-cc
Confidence            5568999998  678999998 88     899999998865433221111000000000  0000    00 00000 01


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      ...|.+++|+||+++|++++. +.|++||+.++.  ....+..|...+..++|+||| .|+.++ ++.|++||+..+.. 
T Consensus       108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-  184 (741)
T 2ecf_A          108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-  184 (741)
T ss_dssp             CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-
T ss_pred             ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-
Confidence            134789999999999999886 999999999873  455666788889999999999 566665 67999999875321 


Q ss_pred             eeeeeeeeeecccc----------------cEEEEEEcCCCCEEEEEcCCC-----------------------------
Q 047728          297 TKHFFSQTLLKQEC----------------AVTALAISPDAAIVYCGSSDG-----------------------------  331 (474)
Q Consensus       297 ~~~~~~~~~~~~~~----------------~v~~l~~~~~~~~l~~~~~dg-----------------------------  331 (474)
                           ......+..                .+..++|+|||++|++++.|+                             
T Consensus       185 -----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          185 -----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             -----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             -----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence                 111111221                247899999999999987765                             


Q ss_pred             ----cEEEeecCc-ccccceeee-ecce--eeEEEEecCCEEEEEeC-----CCcEEEEECCCCceEEEEeecCCcc---
Q 047728          332 ----LVNFWEREL-NLSHGGVLR-GHKL--AILCLVTAGNLVFSGSA-----DMSICIWRRKENEHICLSMLTGHSG---  395 (474)
Q Consensus       332 ----~i~v~d~~~-~~~~~~~~~-~~~~--~v~~~~~~~~~l~sgs~-----dg~i~iwd~~~~~~~~~~~~~~h~~---  395 (474)
                          .|.+||+.+ +........ .|..  ...++ ++|++|+.++.     +..|++||+.+++..  ..+..+..   
T Consensus       260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~  336 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR--VLAHETSPTWV  336 (741)
T ss_dssp             CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE--EEEEEECSSCC
T ss_pred             CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE--EEEEcCCCCcC
Confidence                788899887 653321111 2333  34778 99999987764     578999999988743  33333332   


Q ss_pred             -ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          396 -PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       396 -~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                       .+..++|+||++        ++++++.||.++||.+....      . ...+..+...+.++   ..|||||+.++
T Consensus       337 ~~~~~~~~spdg~--------~~~~~~~~g~~~l~~~~~~~------~-~~~l~~~~~~v~~~---~~~s~dg~~l~  395 (741)
T 2ecf_A          337 PLHNSLRFLDDGS--------ILWSSERTGFQHLYRIDSKG------K-AAALTHGNWSVDEL---LAVDEKAGLAY  395 (741)
T ss_dssp             CCCSCCEECTTSC--------EEEEECTTSSCEEEEECSSS------C-EEESCCSSSCEEEE---EEEETTTTEEE
T ss_pred             CcCCceEECCCCe--------EEEEecCCCccEEEEEcCCC------C-eeeeeecceEEEeE---eEEeCCCCEEE
Confidence             456899999998        89999999999999886321      1 33455555555443   14788997654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=2.3e-19  Score=169.04  Aligned_cols=266  Identities=12%  Similarity=0.178  Sum_probs=175.0

Q ss_pred             CCCcEEEEeCCc---ccc--ccccCccCEEEEEec-CCEEEEEeC---CCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728          128 DSKNIRVWKNQR---EFS--GFKSNSGLVKAIVIS-NEKIFSGHQ---DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC  198 (474)
Q Consensus       128 ~dg~v~vwd~~~---~~~--~~~~h~~~V~~i~~~-~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (474)
                      .++.|.+|+...   .+.  ....+...+..++|+ +..|++++.   ++.|++|+++.+......              
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~--------------   79 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLN--------------   79 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence            355688886331   111  223455667788888 233666654   689999999766432111              


Q ss_pred             ecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC-c--ceeeeeeec---------Ccce
Q 047728          199 SMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD-Y--KCLESVIAH---------DDAV  265 (474)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~--~~~~~~~~~---------~~~v  265 (474)
                                      .+..+...+..++|+|++++|++++ .++.|.+||+.. +  +.+..+...         ...+
T Consensus        80 ----------------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~  143 (347)
T 3hfq_A           80 ----------------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI  143 (347)
T ss_dssp             ----------------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred             ----------------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence                            1123667788999999999999888 779999999963 2  223333221         1247


Q ss_pred             eEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecCc--c
Q 047728          266 NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWEREL--N  341 (474)
Q Consensus       266 ~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~~--~  341 (474)
                      .+++|+|++ .+++...++.|++|++.......  ............+..++|+|+++++++ ...++.|.+|+++.  +
T Consensus       144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~--~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  221 (347)
T 3hfq_A          144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS--EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG  221 (347)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECTTSCEE--EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             eEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE--EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            889999999 66666678899999998322211  111112223346788999999996665 56788999999874  2


Q ss_pred             cc-cceeeee--------cceeeEEEEecCCEEE-EEeCCCcEEEEECCC-CceEEEEeecCCccceEEEEEeeCCcccc
Q 047728          342 LS-HGGVLRG--------HKLAILCLVTAGNLVF-SGSADMSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       342 ~~-~~~~~~~--------~~~~v~~~~~~~~~l~-sgs~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  410 (474)
                      .. .......        ....-++++++|++|+ +...++.|.+|++.. +....+..+..+...+..++|+|+++   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~---  298 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA---  298 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS---
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC---
Confidence            21 1111111        1133477889999774 556689999999963 33344566666677789999999998   


Q ss_pred             ccceEEEEEecC-CCcEEEEEccC
Q 047728          411 REKRWILYSGSL-DKSVKMWRVSE  433 (474)
Q Consensus       411 ~~~~~~l~s~s~-Dg~i~vw~~~~  433 (474)
                           +|++++. ++.|.+|++..
T Consensus       299 -----~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          299 -----FVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             -----EEEEEETTTTEEEEEEECT
T ss_pred             -----EEEEEEcCCCcEEEEEEeC
Confidence                 6666654 58999997653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=5.8e-20  Score=171.91  Aligned_cols=228  Identities=13%  Similarity=0.077  Sum_probs=162.2

Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA  238 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  238 (474)
                      ..+++++.++.|++||+.+++......                                .+...+ +++|+|++++++++
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~--------------------------------~~~~~~-~~~~s~dg~~l~~~   57 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTLEILNQIT--------------------------------LGYDFV-DTAITSDCSNVVVT   57 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEE--------------------------------CCCCEE-EEEECSSSCEEEEE
T ss_pred             EEEEEecCCCeEEEEeCcccceeeeEE--------------------------------ccCCcc-eEEEcCCCCEEEEE
Confidence            357788899999999999886543222                                134445 99999999977777


Q ss_pred             EC-CCcEEEEEcCCcce-eeeeeecCcceeEEEecCCC-eEEEeeCCC---cEEEEEcccCCCceeeeeeeeeecccccE
Q 047728          239 SW-DKTFKVWRTSDYKC-LESVIAHDDAVNSIVAGFDG-LVFTGSADG---TVKVWRRELQGKGTKHFFSQTLLKQECAV  312 (474)
Q Consensus       239 s~-dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  312 (474)
                      +. ++.|.+||+.+++. ...+..+..+..+++|+|++ +++++..++   .|.+||+.....      ... ......+
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~------~~~-~~~~~~~  130 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF------IST-IPIPYDA  130 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE------EEE-EECCTTE
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe------EEE-EECCCCc
Confidence            65 89999999999988 77777777766669999999 666555443   899999875432      122 2234457


Q ss_pred             EEEEEcCCCCEEEEE-cCCCc-EEEeecCcccccc----e-eeeecceeeEEEEecCCEEEEE-eCCCcEEEEECCCCce
Q 047728          313 TALAISPDAAIVYCG-SSDGL-VNFWERELNLSHG----G-VLRGHKLAILCLVTAGNLVFSG-SADMSICIWRRKENEH  384 (474)
Q Consensus       313 ~~l~~~~~~~~l~~~-~~dg~-i~v~d~~~~~~~~----~-~~~~~~~~v~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~  384 (474)
                      ..++|+|++++++++ ..++. |.+|++.......    . ...+.....+++++++++++++ ..++.|.+||+.+++.
T Consensus       131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            899999999855554 55588 9999987543221    1 1112334457788899866554 4689999999988774


Q ss_pred             -EEEEeecCCccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccCCC
Q 047728          385 -ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       385 -~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~~~  435 (474)
                       ..+..+.. ...+..++|+|+++        +|+ +...++.|.+||+.+++
T Consensus       211 ~~~~~~~~~-~~~~~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          211 ITLLNAVGT-NNLPGTIVVSRDGS--------TVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             CEEEEEEEC-SSCCCCEEECTTSS--------EEEEECSSEEEEEEEETTTTE
T ss_pred             cceeeeccC-CCCCceEEECCCCC--------EEEEEEcCCCEEEEEECCCCc
Confidence             11334443 36678999999998        554 44568889999998764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=5.4e-19  Score=166.70  Aligned_cols=276  Identities=9%  Similarity=0.036  Sum_probs=189.7

Q ss_pred             cCcEEEEEEc--CCEEEEeeC-------CCcEEEEeCC--ccccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEec
Q 047728          110 EGHIYSLAAA--GDLLYTGSD-------SKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKV  175 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~-------dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~  175 (474)
                      ...+..++++  +++|++++.       ++.|.+||..  +....+.. ...+..++++  +++++ +...++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3456665554  778887774       5689999954  33333332 3345667776  56454 5556799999999


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcc
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYK  253 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~  253 (474)
                      .+++.............                       -......+.+++|+|+++++++++  .++.|.+||..+++
T Consensus       119 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRT-----------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK  175 (353)
T ss_dssp             TTCCEEEEEESCCCCCC-----------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred             CCCeeEEEEecCCCccc-----------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence            98875433322110000                       000111267899999999888776  47889999999999


Q ss_pred             eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC
Q 047728          254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG  331 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg  331 (474)
                      .+..+..+...+.+++|+|++ .+++++.++.|.+||+.......  ........+...+..++|+|+++++++++. ++
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  253 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILS--RKKLLDDGKEHFFINISLDTARQRAFITDSKAA  253 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE--EEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE--EEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence            988887566678999999998 78888899999999987543211  111111124556889999999997777665 48


Q ss_pred             cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728          332 LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS  410 (474)
Q Consensus       332 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  410 (474)
                      .|.+||..++........+ ....+++++++++++++. .++.|.+||..+++.  +..+.. ...+.+++|+|+++   
T Consensus       254 ~v~~~d~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~---  326 (353)
T 3vgz_A          254 EVLVVDTRNGNILAKVAAP-ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV--VKTFDT-PTHPNSLALSADGK---  326 (353)
T ss_dssp             EEEEEETTTCCEEEEEECS-SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEEEC-CSEEEEEEECTTSC---
T ss_pred             EEEEEECCCCcEEEEEEcC-CCceEEECCCCCEEEEEECCCCeEEEEECCCCeE--EEEEec-CCCCCeEEEcCCCC---
Confidence            9999999887655444333 335588899999666555 689999999998874  334443 34679999999998   


Q ss_pred             ccceEEEEEecCC
Q 047728          411 REKRWILYSGSLD  423 (474)
Q Consensus       411 ~~~~~~l~s~s~D  423 (474)
                           +|+.+..+
T Consensus       327 -----~l~v~~~~  334 (353)
T 3vgz_A          327 -----TLYVSVKQ  334 (353)
T ss_dssp             -----EEEEEEEC
T ss_pred             -----EEEEEEcc
Confidence                 55555544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=4.1e-20  Score=173.07  Aligned_cols=251  Identities=10%  Similarity=0.009  Sum_probs=175.3

Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC-CeeEEEecCCCCEEE-
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD-AISSLSMSEDQNLLY-  236 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~-  236 (474)
                      ++|++++.++.|++||+.+++.......                               ++.. .+..++|+|+++.++ 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~s~dg~~l~v   50 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI-------------------------------ADAGPTPMVPMVAPGGRIAYA   50 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-------------------------------TTCTTCCCCEEECTTSSEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc-------------------------------CCCCCCccceEEcCCCCEEEE
Confidence            4789999999999999988754322211                               0211 477899999998765 


Q ss_pred             EEECCCcEEEEEcCCcceeeeeeec-----CcceeEEEecCCC-eEEEee------------CCCcEEEEEcccCCCcee
Q 047728          237 SASWDKTFKVWRTSDYKCLESVIAH-----DDAVNSIVAGFDG-LVFTGS------------ADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       237 s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~v~~~~~~-~l~~~~------------~dg~i~iwd~~~~~~~~~  298 (474)
                      ++..++.|.+||+.+++.+..+...     ...+..++|+|++ .++++.            .++.|.+||+.....   
T Consensus        51 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---  127 (337)
T 1pby_B           51 TVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---  127 (337)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---
T ss_pred             EeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE---
Confidence            4556789999999999888776532     2367889999999 777765            579999999874321   


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC------
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM------  372 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg------  372 (474)
                         .... .....+..++|+|++++|+++  ++.|.+||+.++................+++++..++..+.++      
T Consensus       128 ---~~~~-~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  201 (337)
T 1pby_B          128 ---RKAF-EAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             ---EEEE-ECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             ---EEEE-eCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeee
Confidence               1122 224457889999999988887  6889999998776543332222112236778877665544332      


Q ss_pred             ------------------cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          373 ------------------SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       373 ------------------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                                        .|.+||+.+++.. ...+..+...+.+++|+|+++        +|+++  ++.|.+||+.++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--------~l~~~--~~~v~~~d~~~~  270 (337)
T 1pby_B          202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKT--------RAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSS--------EEEEE--ESEEEEEETTTT
T ss_pred             eeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCC--------EEEEe--CCeEEEEECCCC
Confidence                              4689999988754 445556777889999999998        77777  799999999876


Q ss_pred             CCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          435 APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      +.       ...+.. ...+.++    +|+|||+.+..
T Consensus       271 ~~-------~~~~~~-~~~~~~~----~~s~dg~~l~~  296 (337)
T 1pby_B          271 AS-------IKRVPL-PHSYYSV----NVSTDGSTVWL  296 (337)
T ss_dssp             EE-------EEEEEC-SSCCCEE----EECTTSCEEEE
T ss_pred             cC-------cceecC-CCceeeE----EECCCCCEEEE
Confidence            32       222222 2334555    77888986654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=4.3e-19  Score=167.26  Aligned_cols=236  Identities=14%  Similarity=0.183  Sum_probs=158.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcc--eeeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~  291 (474)
                      +...+..++|+|+++ |++++.   ++.|.+||+.+++  .+..+..+...+..++|+|++ .|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            556778899999998 665554   6899999997665  444555677889999999999 677766 78999999996


Q ss_pred             cCCCceeeeeeeeeec-------ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee--ee---ecceeeEEEE
Q 047728          292 LQGKGTKHFFSQTLLK-------QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV--LR---GHKLAILCLV  359 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~---~~~~~v~~~~  359 (474)
                      ......... .....+       ....+.+++|+|+++++++...++.|.+|++.........  ..   +.....++++
T Consensus       117 ~~g~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          117 ADGALTLTD-TVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             TTSCEEEEE-EEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCeeecc-eeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            433211111 111111       2235889999999997776777889999999832211111  11   1123347888


Q ss_pred             ecCCEEEE-EeCCCcEEEEECCC--CceEEEEeecCCc------cceEEEEEeeCCccccccceEEE-EEecCCCcEEEE
Q 047728          360 TAGNLVFS-GSADMSICIWRRKE--NEHICLSMLTGHS------GPVKCLAVEKDDESLSREKRWIL-YSGSLDKSVKMW  429 (474)
Q Consensus       360 ~~~~~l~s-gs~dg~i~iwd~~~--~~~~~~~~~~~h~------~~v~~l~~~~~~~~~~~~~~~~l-~s~s~Dg~i~vw  429 (474)
                      ++|+++++ +..++.|.+|++..  ++...+..+....      ..+..++|+|+++        +| ++...++.|.+|
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~l~v~~~~~~~v~v~  267 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH--------FLYVSNRGYNTLAVF  267 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC--------EEEEEEETTTEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC--------EEEEEeCCCCEEEEE
Confidence            99996665 55788999999874  5433333333322      3588999999998        55 566678999999


Q ss_pred             EccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          430 RVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      ++.....    ......+..+...+..+    +|+|||+.|..
T Consensus       268 ~~~~~g~----~~~~~~~~~~~~~~~~~----~~spdg~~l~v  302 (347)
T 3hfq_A          268 AVTADGH----LTLIQQISTEGDFPRDF----DLDPTEAFVVV  302 (347)
T ss_dssp             EECGGGC----EEEEEEEECSSSCCCEE----EECTTSSEEEE
T ss_pred             EECCCCc----EEEeEEEecCCCCcCeE----EECCCCCEEEE
Confidence            9974211    12333444455556666    78999986643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=4.5e-19  Score=171.83  Aligned_cols=297  Identities=12%  Similarity=0.094  Sum_probs=183.9

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCccc------------c-----ccccCccCEEEEEec--CCEEE----EEeCCC
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREF------------S-----GFKSNSGLVKAIVIS--NEKIF----SGHQDG  168 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~------------~-----~~~~h~~~V~~i~~~--~~~l~----s~~~dg  168 (474)
                      ...++++.+.+|++|+.++ |+||+.....            .     ....+...|.+++|+  +++|+    +++.|+
T Consensus        40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~  118 (434)
T 2oit_A           40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS  118 (434)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred             cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence            3445556688999999988 8998632110            0     012345679999998  67888    788999


Q ss_pred             eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEE
Q 047728          169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVW  247 (474)
Q Consensus       169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iw  247 (474)
                      .|+|||+.+..........                ..     .....+.+|...|.+++|+|+ +.+|++++.||+|++|
T Consensus       119 ~v~iwd~~~~~~~~~~~~~----------------~~-----~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw  177 (434)
T 2oit_A          119 IIAFFDVRTFSNEAKQQKR----------------PF-----AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL  177 (434)
T ss_dssp             EEEEEEHHHHHCTTCSSCC----------------CS-----EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             eEEEEEccccccCCcCCcc----------------ee-----eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence            9999998754100000000                00     000133459999999999997 8899999999999999


Q ss_pred             EcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee---ecccccEEEEEEcCCCCE
Q 047728          248 RTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL---LKQECAVTALAISPDAAI  323 (474)
Q Consensus       248 d~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~  323 (474)
                      |++++..+.....|...|.+++|+|++ +|++|+.||.|++||++ ... . .......   ..|...|.+++|++++.+
T Consensus       178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~-~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-K-KVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-E-EEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-c-ccccCCcccCCCCceeEEEEEEecCceE
Confidence            999987777777889999999999999 99999999999999987 221 1 1111111   123448999999998877


Q ss_pred             EEEE-cCCC------cEEEeecCccccc-ceeee----------ecceeeEEEE--ecCCEEEEEe-CCCcEEEEECCCC
Q 047728          324 VYCG-SSDG------LVNFWERELNLSH-GGVLR----------GHKLAILCLV--TAGNLVFSGS-ADMSICIWRRKEN  382 (474)
Q Consensus       324 l~~~-~~dg------~i~v~d~~~~~~~-~~~~~----------~~~~~v~~~~--~~~~~l~sgs-~dg~i~iwd~~~~  382 (474)
                      +++. ..+|      .+++|+++..... ...+.          +.+.....+.  ++.+++++++ ..+.|.|......
T Consensus       255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~  334 (434)
T 2oit_A          255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSD  334 (434)
T ss_dssp             EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTT
T ss_pred             EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCC
Confidence            7543 3333      3889998754211 01111          1111222222  4555555544 4455666654321


Q ss_pred             ce-EEEEee------------cCCccceEEEEEeeCCccc---c----ccceEEEEEecCCCcEEEEEccC
Q 047728          383 EH-ICLSML------------TGHSGPVKCLAVEKDDESL---S----REKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       383 ~~-~~~~~~------------~~h~~~v~~l~~~~~~~~~---~----~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      .. .....+            .........+++.-.....   .    -..-.+|+.-+.||.+..|.+-.
T Consensus       335 ~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          335 QINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             SSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             CCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            10 001111            1122234455553322210   0    01224788889999999999876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=7.6e-18  Score=159.62  Aligned_cols=267  Identities=8%  Similarity=0.082  Sum_probs=171.9

Q ss_pred             CCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeCC----CeEEEEecCCCCcceeeeecccCccceeee
Q 047728          128 DSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQD----GKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       128 ~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      .++.|.+|+..    +.......+...+..++|+  +++|++++.+    +.|.+|+++........ +.          
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~-~~----------   93 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL-LN----------   93 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE-EE----------
T ss_pred             CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE-ee----------
Confidence            46679998632    1111111156667778887  6688888876    79999998864211100 00          


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeee---ec-----------C
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVI---AH-----------D  262 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~---~~-----------~  262 (474)
                                       ....+......+++  ++++|++++ .++.|.+|++.....+..+.   .+           .
T Consensus        94 -----------------~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~  154 (361)
T 3scy_A           94 -----------------TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM  154 (361)
T ss_dssp             -----------------EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred             -----------------EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence                             01113445667777  788787776 57899999997543332221   11           2


Q ss_pred             cceeEEEecCCC-eEEE-eeCCCcEEEEEcccCCC------ceee-eeeeeeecccccEEEEEEcCCCCEEEEEc-CCCc
Q 047728          263 DAVNSIVAGFDG-LVFT-GSADGTVKVWRRELQGK------GTKH-FFSQTLLKQECAVTALAISPDAAIVYCGS-SDGL  332 (474)
Q Consensus       263 ~~v~~v~~~~~~-~l~~-~~~dg~i~iwd~~~~~~------~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~  332 (474)
                      ..+.+++|+|++ .+++ ...++.|.+|++.....      .... ............+..++|+|+++++++++ .++.
T Consensus       155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred             CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence            234789999999 4544 44588999999875432      1110 01122234456688999999999887776 6899


Q ss_pred             EEEeecCcccccc-eeeee-----cceeeEEEEecCCEEEEEeCC--CcEEEEECC--CCceEEEEeecCCccceEEEEE
Q 047728          333 VNFWERELNLSHG-GVLRG-----HKLAILCLVTAGNLVFSGSAD--MSICIWRRK--ENEHICLSMLTGHSGPVKCLAV  402 (474)
Q Consensus       333 i~v~d~~~~~~~~-~~~~~-----~~~~v~~~~~~~~~l~sgs~d--g~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~  402 (474)
                      |.+||+.++.... .....     .....++++++|++|+++..+  +.|.+|++.  +++...+..+.. ...+.+++|
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~  313 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII  313 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence            9999987553211 11111     112357788999998776654  899999996  455444445544 557889999


Q ss_pred             eeCCccccccceEEEEEec-CCCcEEEEEccC
Q 047728          403 EKDDESLSREKRWILYSGS-LDKSVKMWRVSE  433 (474)
Q Consensus       403 ~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~  433 (474)
                      +|+++        +|++++ .++.|.+|++..
T Consensus       314 spdg~--------~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          314 TPNGK--------YLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             CTTSC--------EEEEEETTTTEEEEEEECT
T ss_pred             CCCCC--------EEEEEECCCCCEEEEEEEC
Confidence            99998        666665 779999987753

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=8.5e-20  Score=189.33  Aligned_cols=307  Identities=8%  Similarity=0.033  Sum_probs=191.0

Q ss_pred             EEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCcc---CEEEEEec--CCEEEEEeC---------CCeEEEEecCCC
Q 047728          115 SLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSG---LVKAIVIS--NEKIFSGHQ---------DGKIRVWKVSSK  178 (474)
Q Consensus       115 ~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~---~V~~i~~~--~~~l~s~~~---------dg~i~vwd~~~~  178 (474)
                      +++++|++++++ .|++|++||..  +....+..|..   .|.+++|+  +++|++++.         ++.|++||+.++
T Consensus        22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             EESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            344567655555 59999999954  33333333433   38889998  678888876         789999999887


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      +......                                 ....+..++|+|||+.|+.+. ++.|++||+.+++.....
T Consensus       101 ~~~~~~~---------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~  146 (719)
T 1z68_A          101 EFVRGNE---------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT  146 (719)
T ss_dssp             EECCSSC---------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             cccccee---------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence            5411000                                 123578899999999999886 789999999887765432


Q ss_pred             -eecCcc-----------------eeEEEecCCC-eEEEeeCCC----------------------------------cE
Q 047728          259 -IAHDDA-----------------VNSIVAGFDG-LVFTGSADG----------------------------------TV  285 (474)
Q Consensus       259 -~~~~~~-----------------v~~v~~~~~~-~l~~~~~dg----------------------------------~i  285 (474)
                       .++...                 ..+++|+||| .|++++.|.                                  .|
T Consensus       147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence             222221                 2589999999 777776552                                  67


Q ss_pred             EEEEcccCCCc--eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEee----cCcccccceee---eecc
Q 047728          286 KVWRRELQGKG--TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWE----RELNLSHGGVL---RGHK  352 (474)
Q Consensus       286 ~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~~~~~~---~~~~  352 (474)
                      ++||+..+...  ........+..+...+..++|+||++++++....    ..|.+||    ..++.......   ..|.
T Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~  306 (719)
T 1z68_A          227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT  306 (719)
T ss_dssp             EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS
T ss_pred             EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC
Confidence            88888643210  0000001233577789999999998777764322    2488899    76664432221   3444


Q ss_pred             ee-------eEEEEecCCEEEE--EeCCC--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec
Q 047728          353 LA-------ILCLVTAGNLVFS--GSADM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS  421 (474)
Q Consensus       353 ~~-------v~~~~~~~~~l~s--gs~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s  421 (474)
                      ..       ...++++|+.++.  ...+|  .|.+||+.+++   ...+..+...+..+.+. +++.       +++++.
T Consensus       307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~-------i~~~~~  375 (719)
T 1z68_A          307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV-TQDS-------LFYSSN  375 (719)
T ss_dssp             SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-CSSE-------EEEEES
T ss_pred             ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-eCCE-------EEEEEe
Confidence            32       4578899985544  44555  56777777665   33555666678888877 6662       455554


Q ss_pred             C----CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          422 L----DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       422 ~----Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      .    ++.+++|.+...............+.+|...+..    ++||+||+.++
T Consensus       376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~----~~~s~dg~~l~  425 (719)
T 1z68_A          376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT----ASFSDYAKYYA  425 (719)
T ss_dssp             CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE----EEECGGGSSEE
T ss_pred             cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE----EEECCCCCEEE
Confidence            4    5889999987521100000111112223333333    47888888766

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=5e-19  Score=183.15  Aligned_cols=291  Identities=10%  Similarity=0.080  Sum_probs=190.7

Q ss_pred             CcEEEEEEcC-CEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC-----CCcc
Q 047728          111 GHIYSLAAAG-DLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS-----KDAS  181 (474)
Q Consensus       111 ~~i~~~~~~~-~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~-----~~~~  181 (474)
                      ..|.+++++. +.++.+. ++.|++||.. .....+..+...+..++|+  +++|+++ .|+.|++|++.+     ++..
T Consensus        82 ~~v~~~~~spd~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence            4578877763 4555543 5999999965 3344455567778888898  5678774 689999999988     5543


Q ss_pred             eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE----------------------
Q 047728          182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS----------------------  239 (474)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------------------  239 (474)
                      ........    .+.            ....  +...+...+.+++|+||+++|++++                      
T Consensus       160 ~~~~~~~~----~~~------------~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~  221 (706)
T 2z3z_A          160 AVTIDGTE----TLV------------YGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK  221 (706)
T ss_dssp             ESCSCCBT----TEE------------ESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred             EeccCCCC----CeE------------cccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence            21110000    000            0000  1122334578999999999999987                      


Q ss_pred             -----------CCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-eEEEeeCCC-----cEEEEEcccCCCceeee
Q 047728          240 -----------WDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADG-----TVKVWRRELQGKGTKHF  300 (474)
Q Consensus       240 -----------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~  300 (474)
                                 .+..|++||+.+++......  .|...+.+++|+||+ .|++++.++     .|++||+..+..... .
T Consensus       222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~-~  300 (706)
T 2z3z_A          222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT-L  300 (706)
T ss_dssp             EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE-E
T ss_pred             EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE-E
Confidence                       44779999999887654432  466789999999999 688777665     899999875422111 0


Q ss_pred             eeeeeecccccEEEEEEcC--CCCEEEEEcCCCcEEEeecC-cccccceeeeecceee---EEEEecCCEEEEEeC-CC-
Q 047728          301 FSQTLLKQECAVTALAISP--DAAIVYCGSSDGLVNFWERE-LNLSHGGVLRGHKLAI---LCLVTAGNLVFSGSA-DM-  372 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v---~~~~~~~~~l~sgs~-dg-  372 (474)
                      ...........+..++|+|  ++++++++..|+.+++|+++ .+... ..+..+...+   .+++++++.|+.++. ++ 
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~-~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI-RQVTKGEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-EECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-EecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence            0001011112346789999  99999999999999999876 33222 3334444333   577888987766554 44 


Q ss_pred             ---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-cCC---CcEEEEEccCCC
Q 047728          373 ---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG-SLD---KSVKMWRVSEQA  435 (474)
Q Consensus       373 ---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~D---g~i~vw~~~~~~  435 (474)
                         .|..||..+++.   ..+. |...+.+++|+|+++        +|+.. +.+   +.|++||+.+++
T Consensus       380 ~~~~l~~~d~~~~~~---~~l~-~~~~~~~~~~spdg~--------~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          380 LERHFYCIDIKGGKT---KDLT-PESGMHRTQLSPDGS--------AIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TCBEEEEEETTCCCC---EESC-CSSSEEEEEECTTSS--------EEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ceEEEEEEEcCCCCc---eecc-CCCceEEEEECCCCC--------EEEEEecCCCCCcEEEEEECCCCe
Confidence               667777776652   2333 667799999999998        55554 333   569999987763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=1.4e-19  Score=175.35  Aligned_cols=202  Identities=10%  Similarity=0.130  Sum_probs=147.6

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc----------eee-----eeeecCcceeEEEecCCC-eEE----Ee
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK----------CLE-----SVIAHDDAVNSIVAGFDG-LVF----TG  279 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~v~~~~~~-~l~----~~  279 (474)
                      ...++.+++++++.++++++.|+ +++|+.....          .+.     ....+...|.+++|++++ +|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34678999999999999999888 9998753210          010     112345679999999999 777    78


Q ss_pred             eCCCcEEEEEcccCC-----CceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeeecce
Q 047728          280 SADGTVKVWRRELQG-----KGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL  353 (474)
Q Consensus       280 ~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  353 (474)
                      +.|+.|++||++...     ............+|...|.+++|+|+ +.+|++++.||.|++||+++.... ....+|..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPSTV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCCC
Confidence            899999999987641     11111123455678999999999997 899999999999999999887443 23345655


Q ss_pred             ee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-------CccceEEEEEeeCCccccccceEEEE-EecCC
Q 047728          354 AI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-------HSGPVKCLAVEKDDESLSREKRWILY-SGSLD  423 (474)
Q Consensus       354 ~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~D  423 (474)
                      .+  ++++++|++|++|+.||.|++||.+ ++.  ...+..       |...|.+++|+++..        +++ ....|
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~d  262 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVLWIGTYV--------FAIVYAAAD  262 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEEEEETTE--------EEEEEEETT
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEEEecCce--------EEEEEccCC
Confidence            55  5556689999999999999999998 332  223322       334899999999876        443 34455


Q ss_pred             Cc------EEEEEccCC
Q 047728          424 KS------VKMWRVSEQ  434 (474)
Q Consensus       424 g~------i~vw~~~~~  434 (474)
                      |.      +++|++...
T Consensus       263 g~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          263 GTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCSSSCCEEEEEECCCT
T ss_pred             CccCCCCceEEEEeccC
Confidence            43      899999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=9e-19  Score=181.76  Aligned_cols=278  Identities=8%  Similarity=-0.024  Sum_probs=177.7

Q ss_pred             ceeeeeeeeecC---cEEEEE--EcCCEEEEeeCC---------CcEEEEeCCcc----ccccccCccCEEEEEec--CC
Q 047728          100 NVLIGSLVREEG---HIYSLA--AAGDLLYTGSDS---------KNIRVWKNQRE----FSGFKSNSGLVKAIVIS--NE  159 (474)
Q Consensus       100 ~~~~~~l~~h~~---~i~~~~--~~~~~l~tgs~d---------g~v~vwd~~~~----~~~~~~h~~~V~~i~~~--~~  159 (474)
                      .+....+.+|..   .|.+++  ++|++|++++.+         +.|++||....    +.....|...+..++|+  ++
T Consensus        47 g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~  126 (723)
T 1xfd_A           47 NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ  126 (723)
T ss_dssp             CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT
T ss_pred             CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCC
Confidence            344445555554   266655  559999998764         77889995532    23334455568888898  66


Q ss_pred             EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc---------CCeeEEEecC
Q 047728          160 KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF---------DAISSLSMSE  230 (474)
Q Consensus       160 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V~~l~~~~  230 (474)
                      .|+.++. +.|++|++.+++..........                       ..++.++.         ..+.+++|+|
T Consensus       127 ~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-----------------------~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          127 QLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-----------------------GVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             CEEEEET-TEEEEESSSSSCCEEEECCCBT-----------------------TTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             EEEEEEC-CeEEEEECCCCceEEEecCCCC-----------------------CceECcccceeEEEEeccCcceEEECC
Confidence            8888876 7899999988765422111000                       00111222         2348999999


Q ss_pred             CCCEEEEEECCC----------------------------------cEEEEEcCCcceeeeeeec------CcceeEEEe
Q 047728          231 DQNLLYSASWDK----------------------------------TFKVWRTSDYKCLESVIAH------DDAVNSIVA  270 (474)
Q Consensus       231 ~~~~l~s~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~v~~  270 (474)
                      ||+.|++++.|+                                  .|++||+.+++....+..+      ...+..++|
T Consensus       183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  262 (723)
T 1xfd_A          183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (723)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence            999999887653                                  7999999988865666544      567899999


Q ss_pred             cCCC-eEEEeeC----CCcEEEEEcccCCCceeeeeeeee-ecccccE----EEEEEcCCCCEEEE--EcCCC------c
Q 047728          271 GFDG-LVFTGSA----DGTVKVWRRELQGKGTKHFFSQTL-LKQECAV----TALAISPDAAIVYC--GSSDG------L  332 (474)
Q Consensus       271 ~~~~-~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v----~~l~~~~~~~~l~~--~~~dg------~  332 (474)
                      +||+ .+++...    +..|++||+..+..      .... ..+...+    ..++|+|+|+.|+.  +..++      .
T Consensus       263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  336 (723)
T 1xfd_A          263 ATSTKVAVTWLNRAQNVSILTLCDATTGVC------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH  336 (723)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCE------EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred             eCCCeEEEEEEcCCCCeEEEEEEeCCCCcc------eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence            9999 5545433    35799999875432      1111 1222333    37899999997765  45666      5


Q ss_pred             EEEee-cCcccc--cceeeeecce--eeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecC---CccceEEEE
Q 047728          333 VNFWE-RELNLS--HGGVLRGHKL--AILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTG---HSGPVKCLA  401 (474)
Q Consensus       333 i~v~d-~~~~~~--~~~~~~~~~~--~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~---h~~~v~~l~  401 (474)
                      |.+|| ...+..  ...+..++..  .+.+++++++.|+..+.+   +.++||++..........+..   |...+..++
T Consensus       337 l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  416 (723)
T 1xfd_A          337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSAS  416 (723)
T ss_dssp             EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEE
T ss_pred             EEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEE
Confidence            77777 343330  2222222222  235789999998766555   789999986432111223433   677789999


Q ss_pred             EeeCCc
Q 047728          402 VEKDDE  407 (474)
Q Consensus       402 ~~~~~~  407 (474)
                      |+|+++
T Consensus       417 ~spdg~  422 (723)
T 1xfd_A          417 FSHSMD  422 (723)
T ss_dssp             ECTTSS
T ss_pred             ECCCCC
Confidence            999998

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=1.2e-18  Score=176.21  Aligned_cols=262  Identities=11%  Similarity=0.062  Sum_probs=182.2

Q ss_pred             cCcEEEEE--EcCCEEEEeeC-CCcEEEEeCC-ccccccccCc-cCEEEEEecCCE-EEEEeC---CCeEEEEecCC--C
Q 047728          110 EGHIYSLA--AAGDLLYTGSD-SKNIRVWKNQ-REFSGFKSNS-GLVKAIVISNEK-IFSGHQ---DGKIRVWKVSS--K  178 (474)
Q Consensus       110 ~~~i~~~~--~~~~~l~tgs~-dg~v~vwd~~-~~~~~~~~h~-~~V~~i~~~~~~-l~s~~~---dg~i~vwd~~~--~  178 (474)
                      ..+|++++  ++|++||+++. ||+++||+.. .....+..|. ..+..++|+++. +++++.   +...++|.++.  .
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence            45677766  56999999887 9999999843 2334444555 689999998554 455554   45567776654  2


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE-EEEEECCCcEEEEEcCCcceeee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL-LYSASWDKTFKVWRTSDYKCLES  257 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~  257 (474)
                      ....  .+.                               ....+...+|+|+++. +++.+.++.+.+||+.+++....
T Consensus       101 g~~~--~l~-------------------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l  147 (582)
T 3o4h_A          101 GEEQ--RLE-------------------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL  147 (582)
T ss_dssp             TCCE--ECT-------------------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred             Cccc--ccc-------------------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence            2111  111                               1123345677887753 34444455566999998876555


Q ss_pred             eeecCcceeEEEecCCC-eEEEeeCC----CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-
Q 047728          258 VIAHDDAVNSIVAGFDG-LVFTGSAD----GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-  331 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~-~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-  331 (474)
                      ...+ .  .+++|+||| .+++++.+    +.|++||+..+..       ..+..+...+..++|+|||+.|+++..++ 
T Consensus       148 ~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          148 ARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-------RVFDSGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             EEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-------EEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             ecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-------eEeecCCCccccceECCCCCEEEEccCCCe
Confidence            4433 3  889999999 77777766    7799999875542       34566778899999999999999888888 


Q ss_pred             -cEEEeecCcccccceeeeecceee--EE--------EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEE
Q 047728          332 -LVNFWERELNLSHGGVLRGHKLAI--LC--------LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL  400 (474)
Q Consensus       332 -~i~v~d~~~~~~~~~~~~~~~~~v--~~--------~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l  400 (474)
                       .|++||+.++...  ....|...+  ..        ++++|.++++++.|+.+++|++  ++.  ..   ...+.|.++
T Consensus       218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~--~~---~~~~~v~~~  288 (582)
T 3o4h_A          218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER--VE---APQGNHGRV  288 (582)
T ss_dssp             EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE--EC---CCSSEEEEE
T ss_pred             eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe--ec---cCCCceEEE
Confidence             8999999877654  444443322  23        8899999999999999999999  542  22   344678999


Q ss_pred             EEeeCCccccccceEEEEEecCCCc---EEEEEcc
Q 047728          401 AVEKDDESLSREKRWILYSGSLDKS---VKMWRVS  432 (474)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~s~s~Dg~---i~vw~~~  432 (474)
                      +|+ ++.        ++++++.+..   |.+|+..
T Consensus       289 ~~s-dg~--------~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          289 VLW-RGK--------LVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEE-TTE--------EEEEEEETTEEEEEEEETTC
T ss_pred             Eec-CCE--------EEEEEcCCCCCCeEEEEcCC
Confidence            999 887        7788777654   5555544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=2.2e-18  Score=162.18  Aligned_cols=226  Identities=11%  Similarity=0.044  Sum_probs=159.5

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      +..+++++.++.|++||+.+++........                               ....+..++|+|+++++++
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~s~dg~~~~v   59 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------------------------------DKFGPGTAMMAPDNRTAYV   59 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------SCCSSCEEEECTTSSEEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecC-------------------------------CCCCCceeEECCCCCEEEE
Confidence            557889999999999999887543222110                               1124678999999987654


Q ss_pred             -EECCCcEEEEEcCCcceeeeeeecC------cceeEEEecCCC-eEEEeeCC------------CcEEEEEcccCCCce
Q 047728          238 -ASWDKTFKVWRTSDYKCLESVIAHD------DAVNSIVAGFDG-LVFTGSAD------------GTVKVWRRELQGKGT  297 (474)
Q Consensus       238 -~s~dg~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~~~-~l~~~~~d------------g~i~iwd~~~~~~~~  297 (474)
                       ...++.|.+||+.+++.+..+....      ..+..++|+|++ .+++++.+            +.|.+||+.......
T Consensus        60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  139 (349)
T 1jmx_B           60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK  139 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred             EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence             4568999999999998887775432      337899999999 77777755            899999997633211


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec--------------------------
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH--------------------------  351 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------------------------  351 (474)
                         .. ....+...+.+++|+|+++ +++++.  .|.+||+.++........+.                          
T Consensus       140 ---~~-~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          140 ---PV-RTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             ---CS-EEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ---ee-eeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence               11 1122334688999999999 665544  49999987764332211110                          


Q ss_pred             -------------------------------------------ceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728          352 -------------------------------------------KLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICL  387 (474)
Q Consensus       352 -------------------------------------------~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~  387 (474)
                                                                 .....++++ ++++++++  ++.|.+||+.+++..  
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~--  288 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI--  288 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE--
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE--
Confidence                                                       011234557 89999888  889999999988743  


Q ss_pred             EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       388 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..+.. ...+.+++|+|+++        +|++++.++.|++||+.++
T Consensus       289 ~~~~~-~~~~~~~~~s~dg~--------~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          289 KAANL-DHTYYCVAFDKKGD--------KLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEEC-SSCCCEEEECSSSS--------CEEEESBSSEEEEEETTTT
T ss_pred             EEEcC-CCCccceEECCCCC--------EEEEecCCCeEEEEecccc
Confidence            33332 34578999999998        6777888999999999876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=1.8e-17  Score=157.02  Aligned_cols=236  Identities=14%  Similarity=0.152  Sum_probs=152.0

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC----CcEEEEEcCC--cce--eeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEE
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD----KTFKVWRTSD--YKC--LESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVW  288 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iw  288 (474)
                      +...+..++|+|++++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++ .+++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            55667789999999999999886    7999998865  432  3333445556777787  55 555544 68899999


Q ss_pred             EcccCCCceeeeeeeee--------ecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccc------cc------ee
Q 047728          289 RRELQGKGTKHFFSQTL--------LKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLS------HG------GV  347 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~------~~------~~  347 (474)
                      ++...............        ..+...+.+++|+|++++|++++ .++.|.+|++.....      +.      ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754322111110011        11233468899999999766554 588999998875431      10      11


Q ss_pred             ee--ecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEee---cCCccceEEEEEeeCCccccccceEEEEEec
Q 047728          348 LR--GHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSML---TGHSGPVKCLAVEKDDESLSREKRWILYSGS  421 (474)
Q Consensus       348 ~~--~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s  421 (474)
                      ..  +.....++++++++++++++ .++.|.+||+.+++...+..+   ..+......++|+|+++        +|+++.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~--------~l~v~~  277 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK--------YLYASN  277 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS--------EEEEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC--------EEEEEC
Confidence            11  22233478889999888777 689999999987754333333   33345578999999998        675555


Q ss_pred             C--CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          422 L--DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       422 ~--Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      .  ++.|.+|++.......   .....+.. ...+..+    +|+|||++|..
T Consensus       278 ~~~~~~i~v~~~~~~~g~~---~~~~~~~~-g~~~~~~----~~spdg~~l~~  322 (361)
T 3scy_A          278 RLKADGVAIFKVDETNGTL---TKVGYQLT-GIHPRNF----IITPNGKYLLV  322 (361)
T ss_dssp             CSSSCEEEEEEECTTTCCE---EEEEEEEC-SSCCCEE----EECTTSCEEEE
T ss_pred             CCCCCEEEEEEEcCCCCcE---EEeeEecC-CCCCceE----EECCCCCEEEE
Confidence            4  5899999996321111   12222222 3345556    78899986654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=2.9e-19  Score=180.70  Aligned_cols=251  Identities=6%  Similarity=-0.000  Sum_probs=174.2

Q ss_pred             ccCEEEEEec--CCEEEEEeC-CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc-CCe
Q 047728          148 SGLVKAIVIS--NEKIFSGHQ-DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF-DAI  223 (474)
Q Consensus       148 ~~~V~~i~~~--~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V  223 (474)
                      ..+|.+++++  +++|++++. ||+++||+++.++...                                 +..|. ..+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---------------------------------lt~~~~~~~   67 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---------------------------------LNREPINSV   67 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---------------------------------CCSSCCSEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---------------------------------eeccccccc
Confidence            5579999887  789998877 9999999986654321                                 11133 578


Q ss_pred             eEEEecCCCCEEEEEEC---CCcEEEEEcCC---cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC
Q 047728          224 SSLSMSEDQNLLYSASW---DKTFKVWRTSD---YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      ..++|+|| +++++++.   +....+|.+..   +... .+.. ...+...+|+|++  .+++...++.+.+||+..+..
T Consensus        68 ~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~  144 (582)
T 3o4h_A           68 LDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL  144 (582)
T ss_dssp             CEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred             ccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE
Confidence            99999999 77777775   45556655432   2222 3322 2233456777777  455555556666999875421


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCcccccceeeeecce--eeEEEEecCCEEEEEe
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELNLSHGGVLRGHKL--AILCLVTAGNLVFSGS  369 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sgs  369 (474)
                             ..+..+..  .+++|+|||++|++++.+    +.|++||+.++...  .+..|..  ...+++|||++|+++.
T Consensus       145 -------~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          145 -------RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             -------EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEE
T ss_pred             -------EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEcc
Confidence                   11112222  789999999999988777    78999998877543  3444544  3467888999999888


Q ss_pred             CCC--cEEEEECCCCceEEEEeecCCccceEEEE--------EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728          370 ADM--SICIWRRKENEHICLSMLTGHSGPVKCLA--------VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV  439 (474)
Q Consensus       370 ~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~  439 (474)
                      .++  .|++||+.+++.  . .+.+|...+..++        |+||+.        ++++++.|+.+++|++  ++.   
T Consensus       214 ~~~~~~i~~~d~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~spdg~--------~~~~~~~~g~~~l~~~--g~~---  277 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSV--E-DLELPSKDFSSYRPTAITWLGYLPDGR--------LAVVARREGRSAVFID--GER---  277 (582)
T ss_dssp             CSSCEEEEEECTTTCCE--E-ECCCSCSHHHHHCCSEEEEEEECTTSC--------EEEEEEETTEEEEEET--TEE---
T ss_pred             CCCeeEEEEEcCCCCcE--E-EccCCCcChhhhhhccccceeEcCCCc--------EEEEEEcCCcEEEEEE--CCe---
Confidence            888  899999998874  3 6677877777777        999996        8999999999999999  321   


Q ss_pred             CCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          440 STTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       440 ~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                          ..   .....+.++    +|+ ||+++++.
T Consensus       278 ----~~---~~~~~v~~~----~~s-dg~~l~~~  299 (582)
T 3o4h_A          278 ----VE---APQGNHGRV----VLW-RGKLVTSH  299 (582)
T ss_dssp             ----EC---CCSSEEEEE----EEE-TTEEEEEE
T ss_pred             ----ec---cCCCceEEE----Eec-CCEEEEEE
Confidence                11   112334444    677 89888754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=3.2e-17  Score=155.57  Aligned_cols=242  Identities=11%  Similarity=0.094  Sum_probs=161.0

Q ss_pred             cCEEEEEec--CCEEEEEeCCCeEEEEecC-CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          149 GLVKAIVIS--NEKIFSGHQDGKIRVWKVS-SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       149 ~~V~~i~~~--~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      ..+..++++  +++|++++.+ .|.+|+++ +++.......                              ..+ +.+.+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------~~~-g~~~~   87 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------PIG-GHPRA   87 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------------------ECC-SSGGG
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe------------------------------ecC-CCCcc
Confidence            457788887  6688888888 89999997 5533211100                              001 12455


Q ss_pred             EEecCCCCE--EEEEE-------------CCCcEEEEEcC-Ccceeeeeee----cCcceeEEEecCCC-eEEEee-CCC
Q 047728          226 LSMSEDQNL--LYSAS-------------WDKTFKVWRTS-DYKCLESVIA----HDDAVNSIVAGFDG-LVFTGS-ADG  283 (474)
Q Consensus       226 l~~~~~~~~--l~s~s-------------~dg~i~iwd~~-~~~~~~~~~~----~~~~v~~v~~~~~~-~l~~~~-~dg  283 (474)
                      ++|+|++++  ++++.             .++.+.+|++. +++....+..    +...+.+++|+|+| .++++. .++
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~  167 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN  167 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence            889999984  44543             68999999997 4665544432    45678999999999 566655 468


Q ss_pred             cEEEEEcc-cCCCceeeeeeeeee--cccccEEEEEEcCCCCEEEEEcC-CCcEEEeecC--cccccc-----eee----
Q 047728          284 TVKVWRRE-LQGKGTKHFFSQTLL--KQECAVTALAISPDAAIVYCGSS-DGLVNFWERE--LNLSHG-----GVL----  348 (474)
Q Consensus       284 ~i~iwd~~-~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~-----~~~----  348 (474)
                      .|++||+. .+..    .......  .+...+..++|+|++++|++++. ++.|.+|+++  ++....     ..+    
T Consensus       168 ~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          168 KLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             EEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             EEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            99999997 3221    1111222  23567999999999999887765 6899999765  332210     111    


Q ss_pred             eecc--------eeeEE-EEecCCEEEEEeCCC------cEEEEECC-CCceEEEE-eecCCccceEEEEEee---CCcc
Q 047728          349 RGHK--------LAILC-LVTAGNLVFSGSADM------SICIWRRK-ENEHICLS-MLTGHSGPVKCLAVEK---DDES  408 (474)
Q Consensus       349 ~~~~--------~~v~~-~~~~~~~l~sgs~dg------~i~iwd~~-~~~~~~~~-~~~~h~~~v~~l~~~~---~~~~  408 (474)
                      .+|.        ..-++ ++++|++|+++..+.      .|.+|++. +++...+. ....+...+..++|+|   +++ 
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-  322 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-  322 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-
Confidence            1222        33467 889999988776432      89999996 55533222 2334555677899999   788 


Q ss_pred             ccccceEEEEEecC-CCcEEEEEccCC
Q 047728          409 LSREKRWILYSGSL-DKSVKMWRVSEQ  434 (474)
Q Consensus       409 ~~~~~~~~l~s~s~-Dg~i~vw~~~~~  434 (474)
                             +|++++. ++.|++|++...
T Consensus       323 -------~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          323 -------WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             -------EEEEECSSSCEEEEEEEETT
T ss_pred             -------EEEEEEcCCCeEEEEEEchh
Confidence                   7877775 589999999765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1.4e-17  Score=156.54  Aligned_cols=236  Identities=11%  Similarity=0.087  Sum_probs=161.1

Q ss_pred             EcCCEEEEeeCCCcEEEEeCC--ccccccccCc-cCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728          118 AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS-GLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPT  191 (474)
Q Consensus       118 ~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~-~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  191 (474)
                      .+++++++++.++.|++||..  +....+..+. ..+..++++  ++++ +++..++.|.+||+.+++..........+ 
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~-   87 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-   87 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-
Confidence            346789999999999999964  3334444332 246678887  5555 45567899999999887544322211000 


Q ss_pred             cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC------------CcEEEEEcCCccee---e
Q 047728          192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD------------KTFKVWRTSDYKCL---E  256 (474)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------------g~i~iwd~~~~~~~---~  256 (474)
                                               ......+.+++|+|++++|++++.+            +.|.+||+.+++..   .
T Consensus        88 -------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           88 -------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             -------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -------------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence                                     0012347789999999999998865            89999999885543   3


Q ss_pred             eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee---------------------------------
Q 047728          257 SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ---------------------------------  303 (474)
Q Consensus       257 ~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------------------  303 (474)
                      .+. +...+.+++|+|++.+++++  +.|.+||+.............                                 
T Consensus       143 ~~~-~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (349)
T 1jmx_B          143 TFP-MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  219 (349)
T ss_dssp             EEE-CCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             ecc-CCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence            333 34468899999999655544  349999986543211000000                                 


Q ss_pred             -----------------------------eeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecce
Q 047728          304 -----------------------------TLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL  353 (474)
Q Consensus       304 -----------------------------~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  353 (474)
                                                   ........+..++|+| ++++++++  ++.|.+||+.+.........++..
T Consensus       220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~  297 (349)
T 1jmx_B          220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTY  297 (349)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCC
T ss_pred             CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCc
Confidence                                         0000122466788899 99999988  889999999887655444445555


Q ss_pred             eeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728          354 AILCLVTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       354 ~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      ..+++++++++|++++.++.|.+||..+++.
T Consensus       298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             cceEECCCCCEEEEecCCCeEEEEeccccce
Confidence            5678889999888888899999999998874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=8.3e-17  Score=152.16  Aligned_cols=288  Identities=13%  Similarity=0.128  Sum_probs=187.1

Q ss_pred             CCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCCCcceeeeecccCccc
Q 047728          128 DSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       128 ~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      .|+.|.+||..  +.+..+..+..+  .++++  +++++++.          .++.|.+||..+.+..........    
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~----  102 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK----  102 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT----
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc----
Confidence            47799999943  445555555554  78887  66888876          367899999987665433322100    


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeee-eeecCcceeEEEe
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLES-VIAHDDAVNSIVA  270 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~  270 (474)
                                           . ..+......++++|++++|+++..  ++.|.+||+.+++.+.. +.. .. ...+.+
T Consensus       103 ---------------------~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~  158 (361)
T 2oiz_A          103 ---------------------R-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIP  158 (361)
T ss_dssp             ---------------------B-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEE
T ss_pred             ---------------------c-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEE
Confidence                                 0 002345668999999999998874  58999999999988776 532 22 223556


Q ss_pred             cCCC--eEEEeeCCCcEEEEEcccCCCceeeeee-eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-e
Q 047728          271 GFDG--LVFTGSADGTVKVWRRELQGKGTKHFFS-QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG-G  346 (474)
Q Consensus       271 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~  346 (474)
                      .|++  .+++.+.||.+.+|++....+....... ..+.....+ ..+.+.+++..++..+.++.|.++|+....... .
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG  237 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence            7766  7888899999999998643321100000 111111112 123345667777777888999999986442111 0


Q ss_pred             ee------------eecceeeEEEEecCCEEEEEeC-----------CCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728          347 VL------------RGHKLAILCLVTAGNLVFSGSA-----------DMSICIWRRKENEHICLSMLTGHSGPVKCLAVE  403 (474)
Q Consensus       347 ~~------------~~~~~~v~~~~~~~~~l~sgs~-----------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~  403 (474)
                      ..            .......++++++++.++++..           .+.|.+||+.+.+  .+..+..+.  +.+++|+
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~--p~~ia~s  313 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD--ALSMTID  313 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT--CCEEEEE
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC--eeEEEEC
Confidence            00            0111223688999888877643           3589999999987  456677666  9999999


Q ss_pred             eCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728          404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR  468 (474)
Q Consensus       404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~  468 (474)
                      |+++        +|++++. +.|.+||..++..     +....+..+...+..+    +++|||+
T Consensus       314 pdg~--------~l~v~n~-~~v~v~D~~t~~l-----~~~~~i~~~G~~P~~~----~~~p~G~  360 (361)
T 2oiz_A          314 QQRN--------LMLTLDG-GNVNVYDISQPEP-----KLLRTIEGAAEASLQV----QFHPVGG  360 (361)
T ss_dssp             TTTT--------EEEEECS-SCEEEEECSSSSC-----EEEEEETTSCSSEEEE----EECCCSC
T ss_pred             CCCC--------EEEEeCC-CeEEEEECCCCcc-----eeeEEeccCCCCcEEE----EecCCCC
Confidence            9999        7888776 9999999988622     1223333444555566    6788886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=3.1e-17  Score=156.85  Aligned_cols=279  Identities=11%  Similarity=0.003  Sum_probs=176.4

Q ss_pred             ccccccccCccCEEE-----EEec--CCEEEEEeC-CCe--EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE
Q 047728          139 REFSGFKSNSGLVKA-----IVIS--NEKIFSGHQ-DGK--IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV  208 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~-----i~~~--~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (474)
                      ..+..+..|......     .+|+  +++|+.++. +|.  |.+||+.+++.....                        
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt------------------------   76 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT------------------------   76 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC------------------------
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee------------------------
Confidence            445556666655555     5676  678888877 674  777888776543211                        


Q ss_pred             eeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE--ecCCC-eEEE-------
Q 047728          209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDG-LVFT-------  278 (474)
Q Consensus       209 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~--~~~~~-~l~~-------  278 (474)
                              .++...+..++|+|+++.|+.++.++.|++||+.+++....+..+...+....  +++++ .++.       
T Consensus        77 --------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~  148 (388)
T 3pe7_A           77 --------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRED  148 (388)
T ss_dssp             --------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             --------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcc
Confidence                    12444455678999999999999999999999999987776666665554333  47888 4432       


Q ss_pred             ---------------eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCC------CcEEEe
Q 047728          279 ---------------GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSD------GLVNFW  336 (474)
Q Consensus       279 ---------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~v~  336 (474)
                                     ...+..|.+||+..+.       ...+..+...+..++|+| +++.|+....+      ..|.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~  221 (388)
T 3pe7_A          149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI  221 (388)
T ss_dssp             CCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred             cccccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence                           2244678999987543       223334556789999999 99988877653      378888


Q ss_pred             ecCcccccceeeeec---ceeeEEEEecCCEEEEEeC-CC----cEEEEECCCCceEEEEeecCCccc---eEEEEEeeC
Q 047728          337 ERELNLSHGGVLRGH---KLAILCLVTAGNLVFSGSA-DM----SICIWRRKENEHICLSMLTGHSGP---VKCLAVEKD  405 (474)
Q Consensus       337 d~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~sgs~-dg----~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~~~~~  405 (474)
                      |....... .+....   ......++|+|+.|+..+. ++    .|++||+.+++...+..+.++...   ...++|+||
T Consensus       222 d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd  300 (388)
T 3pe7_A          222 NEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD  300 (388)
T ss_dssp             ETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred             eCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence            87654322 222222   1223568889987755443 22    399999998876555555442111   122379999


Q ss_pred             CccccccceEEEEEe---------cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC-------ccccCCCCCcCCce
Q 047728          406 DESLSREKRWILYSG---------SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN-------SLPYAPSFSSQGRI  469 (474)
Q Consensus       406 ~~~~~~~~~~~l~s~---------s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~-------~l~~~p~~s~Dg~~  469 (474)
                      ++        .|+..         ..+..|++|++.++..        ..+..+.....       ....+|+|||||+.
T Consensus       301 g~--------~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~  364 (388)
T 3pe7_A          301 GS--------DAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--------HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ  364 (388)
T ss_dssp             EC--------CC------------CCCCEEEEEETTTTEE--------EEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             CC--------cceeEeeeccccccCCCCEEEEEeccCCce--------EEeccccCcccccccccccCCCCccCCCCCCE
Confidence            88        44432         5567899999987632        22333332111       02456789999998


Q ss_pred             eecc
Q 047728          470 CQKR  473 (474)
Q Consensus       470 l~~~  473 (474)
                      |+..
T Consensus       365 l~~~  368 (388)
T 3pe7_A          365 ILFT  368 (388)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=2.2e-16  Score=150.95  Aligned_cols=282  Identities=9%  Similarity=0.025  Sum_probs=180.3

Q ss_pred             eeeeeeeecCcEEE-------EEEcCCEEEEeeC-CCc--EEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCC
Q 047728          102 LIGSLVREEGHIYS-------LAAAGDLLYTGSD-SKN--IRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQD  167 (474)
Q Consensus       102 ~~~~l~~h~~~i~~-------~~~~~~~l~tgs~-dg~--v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d  167 (474)
                      .+..|..|.+....       ++|+|++|+.++. +|.  |.+||..  +.......+...+..+.|+  ++.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34455566655544       6777998888887 674  7777744  3333344455555455676  7789999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE--EecCCCCEEEEE-------
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL--SMSEDQNLLYSA-------  238 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~~~l~s~-------  238 (474)
                      +.|++||+.+++......                                .+...+...  .+++++.+++..       
T Consensus       102 ~~l~~~d~~~g~~~~~~~--------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~  149 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQ--------------------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDW  149 (388)
T ss_dssp             TEEEEEETTTCCEEEEEE--------------------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             CeEEEEECCCCcceeeee--------------------------------chhhcccccceeECCCCCeeccccccCccc
Confidence            999999999876532211                                122223222  347888887643       


Q ss_pred             ---------------ECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCC------CcEEEEEcccCCC
Q 047728          239 ---------------SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSAD------GTVKVWRRELQGK  295 (474)
Q Consensus       239 ---------------s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~d------g~i~iwd~~~~~~  295 (474)
                                     ..+..|.+||+.+++.. .+..+...+..+.|+| ++ .|+....+      ..|.++|+.....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM  228 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence                           23477999999988654 4445677889999999 88 56655543      3677777653321


Q ss_pred             ceeeeeeeeeeccc--ccEEEEEEcCCCCEEEEEcC-CC----cEEEeecCcccccce-eeeecc-----eeeEEEEecC
Q 047728          296 GTKHFFSQTLLKQE--CAVTALAISPDAAIVYCGSS-DG----LVNFWERELNLSHGG-VLRGHK-----LAILCLVTAG  362 (474)
Q Consensus       296 ~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~-~~~~~~-----~~v~~~~~~~  362 (474)
                             ..+..+.  ..+..++|+|+|+.|+..+. ++    .|++||+.++..... ...++.     ..-..++++|
T Consensus       229 -------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg  301 (388)
T 3pe7_A          229 -------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG  301 (388)
T ss_dssp             -------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred             -------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence                   1222222  35778899999997755433 22    399999987753211 111110     1113689999


Q ss_pred             CEEEEE---------eCCCcEEEEECCCCceEEEEeecCCcc-----------ceEEEEEeeCCccccccceEEEEEecC
Q 047728          363 NLVFSG---------SADMSICIWRRKENEHICLSMLTGHSG-----------PVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       363 ~~l~sg---------s~dg~i~iwd~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      +.|+..         ..+..|++||+.+++.   ..+..+..           .+.+++|+||++.       +++++..
T Consensus       302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~-------l~~~s~~  371 (388)
T 3pe7_A          302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ-------ILFTSDV  371 (388)
T ss_dssp             CCC------------CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSE-------EEEEECT
T ss_pred             CcceeEeeeccccccCCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCE-------EEEEecC
Confidence            877754         4567899999998763   34444544           5788999999983       4445556


Q ss_pred             CCcEEEEEccC
Q 047728          423 DKSVKMWRVSE  433 (474)
Q Consensus       423 Dg~i~vw~~~~  433 (474)
                      +|...||.+.-
T Consensus       372 ~g~~~l~~~~l  382 (388)
T 3pe7_A          372 HGKPALYLATL  382 (388)
T ss_dssp             TSSCEEEEEEC
T ss_pred             CCceeEEEEEC
Confidence            88888887754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=1e-15  Score=145.17  Aligned_cols=234  Identities=10%  Similarity=0.140  Sum_probs=150.7

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceeeeeeec-CcceeEEEecCCCe---EEEee-------------CC
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLESVIAH-DDAVNSIVAGFDGL---VFTGS-------------AD  282 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~v~~~~~~~---l~~~~-------------~d  282 (474)
                      ..+..++|+|++++|++++.+ .|.+||+. +++........ .+.+.+++++|++.   ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            467889999999999999988 99999997 77665433211 13466789999993   33443             68


Q ss_pred             CcEEEEEcccCCCceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecC-ccccc-ceeee----eccee
Q 047728          283 GTVKVWRRELQGKGTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSS-DGLVNFWERE-LNLSH-GGVLR----GHKLA  354 (474)
Q Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~-~~~~~-~~~~~----~~~~~  354 (474)
                      +.+.+|++........  ..... ..+...+.+++|+|+|++|+++.. ++.|.+||+. ++... .....    +....
T Consensus       119 g~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          119 GYGNVFSVSETGKLEK--NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CEEEEEEECTTCCEEE--EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             ceEEEEccCCCCcCcc--eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            9999999974332111  11111 124567999999999998887654 6799999997 55322 11121    22234


Q ss_pred             eEEEEecCCEEEEEeC-CCcEEEEECC--CCceEE----EEeec----CCcc------ceEEEE-EeeCCccccccceEE
Q 047728          355 ILCLVTAGNLVFSGSA-DMSICIWRRK--ENEHIC----LSMLT----GHSG------PVKCLA-VEKDDESLSREKRWI  416 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~-dg~i~iwd~~--~~~~~~----~~~~~----~h~~------~v~~l~-~~~~~~~~~~~~~~~  416 (474)
                      -++++++|+++++++. ++.|.+|++.  +++...    +..+.    +|..      .+..++ |+||++        +
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~--------~  268 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK--------Y  268 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS--------E
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC--------E
Confidence            4678899999988775 6899999875  444221    12222    2222      588999 999998        6


Q ss_pred             EEEecCC-C-----cEEEEEccC-CCCCCCCCcccccccCCCCCCCccccCCCCCc---CCceeecc
Q 047728          417 LYSGSLD-K-----SVKMWRVSE-QAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSS---QGRICQKR  473 (474)
Q Consensus       417 l~s~s~D-g-----~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~---Dg~~l~~~  473 (474)
                      |+++..+ .     .|.+|++.. +...    .....+..+...+..+    +|+|   ||++|...
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~----~~~~~~~~~~~~~~~~----a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIE----KQLFLSPTPTSGGHSN----AVSPCPWSDEWMAIT  327 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEE----EEEEEEECSSCCTTCC----CEEECTTCTTEEEEE
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEE----EeeeeeecCCCCcccc----eecCCCcCCCEEEEE
Confidence            6665432 2     899999963 3210    0000122234445566    6677   89887653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=2.6e-16  Score=163.38  Aligned_cols=304  Identities=10%  Similarity=0.077  Sum_probs=181.0

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccC-----EEEEEec--CCEEEEEeCC---------CeEEEEecCC
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGL-----VKAIVIS--NEKIFSGHQD---------GKIRVWKVSS  177 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~-----V~~i~~~--~~~l~s~~~d---------g~i~vwd~~~  177 (474)
                      +.++|++|+++  ||+|++||..  +....+..|...     ...+.|+  +++|+.++.+         +.+.+||+.+
T Consensus        24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~  101 (740)
T 4a5s_A           24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (740)
T ss_dssp             ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC
Confidence            34457788886  8999999954  444445555432     2335666  7788888876         5667999998


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES  257 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  257 (474)
                      ++...                                 +..|...+...+|+|||+.|+.+. |+.|++||+.+++....
T Consensus       102 ~~~~~---------------------------------l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A          102 RQLIT---------------------------------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             TEECC---------------------------------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             CcEEE---------------------------------cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence            76431                                 122667899999999999999885 68999999988775432


Q ss_pred             e-eecCcc-----------------eeEEEecCCC-eEEEeeCCC-----------------------------------
Q 047728          258 V-IAHDDA-----------------VNSIVAGFDG-LVFTGSADG-----------------------------------  283 (474)
Q Consensus       258 ~-~~~~~~-----------------v~~v~~~~~~-~l~~~~~dg-----------------------------------  283 (474)
                      . .++...                 ...+.|+||| .|+.++.|.                                   
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence            1 122221                 2358999999 676664332                                   


Q ss_pred             -cEEEEEccc---CCCceeeeeee--eeecccccEEEEEEcCCCCEEEEEcC----CCcEEEeecCccc----c--ccee
Q 047728          284 -TVKVWRREL---QGKGTKHFFSQ--TLLKQECAVTALAISPDAAIVYCGSS----DGLVNFWERELNL----S--HGGV  347 (474)
Q Consensus       284 -~i~iwd~~~---~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~----~--~~~~  347 (474)
                       .|++||+..   +.......+..  ....+...+..++|+||++.++....    +..|.+||+.++.    +  ....
T Consensus       228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l  307 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH  307 (740)
T ss_dssp             EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred             eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence             366677664   32101100000  01136777999999999996665432    3469999998775    1  1111


Q ss_pred             -eeecce-------eeEEEEecCCEEE-EEeC-C--CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          348 -LRGHKL-------AILCLVTAGNLVF-SGSA-D--MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       348 -~~~~~~-------~v~~~~~~~~~l~-sgs~-d--g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                       ...+..       ....+++||+.|+ ..+. +  ..|++||..+++.   ..+......|..+.. ++++.       
T Consensus       308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~---~~lT~g~~~v~~~~~-~d~~~-------  376 (740)
T 4a5s_A          308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC---TFITKGTWEVIGIEA-LTSDY-------  376 (740)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC---EESCCSSSCEEEEEE-ECSSE-------
T ss_pred             eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce---EecccCCEEEEEEEE-EeCCE-------
Confidence             123332       2356889999877 6653 3  4688889887763   244444555666543 44442       


Q ss_pred             EEEEecC----CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          416 ILYSGSL----DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       416 ~l~s~s~----Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      +++++..    .+...||.+......     ....+...-....+-.+.++|||||+.++
T Consensus       377 i~f~~~~~~~~~~~~~ly~v~~~g~~-----~~~~lt~~~~~~~~~~~~~~~S~dg~~~~  431 (740)
T 4a5s_A          377 LYYISNEYKGMPGGRNLYKIQLIDYT-----KVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (740)
T ss_dssp             EEEEESCGGGCTTCBEEEEEETTEEE-----EEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             EEEEEecCCCCCceeEEEEEECCCCC-----cceeeccccCCCCCceEEEEECCCCCEEE
Confidence            5555554    345667766532110     00011100000112334568899998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=1.8e-15  Score=155.23  Aligned_cols=286  Identities=9%  Similarity=0.038  Sum_probs=181.6

Q ss_pred             eeeeeecCcEEEEEEcCCEEE--Ee--eCCCcEEEEeC--CccccccccCccCEE---------EEEec----CCE-EEE
Q 047728          104 GSLVREEGHIYSLAAAGDLLY--TG--SDSKNIRVWKN--QREFSGFKSNSGLVK---------AIVIS----NEK-IFS  163 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~~~~l~--tg--s~dg~v~vwd~--~~~~~~~~~h~~~V~---------~i~~~----~~~-l~s  163 (474)
                      ..+.+|...+..++++++.++  ..  +.++...||..  ......+..|...+.         ...|+    ++. |+.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            346678889999999977443  34  44788999972  333445555555544         44333    667 665


Q ss_pred             EeC-CCeEEEEecC--C-CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728          164 GHQ-DGKIRVWKVS--S-KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS  239 (474)
Q Consensus       164 ~~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  239 (474)
                      ++. +..|.+|++.  . ++...   +...+                         ...|...+.+++|+|||+.|+.++
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~---l~~~~-------------------------~~~~~~~~~~~~~spDg~~l~~~~  148 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRP---LTPVS-------------------------AVGGGLRWADPVLLPERGEVWCMA  148 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEE---CSCCC-------------------------CSTTCEEEEEEEEETTTTEEEEEE
T ss_pred             EECCCCeEEEEcCCCCCCCCCEe---ccCCc-------------------------cCCCCccccCcEECCCCCEEEEEE
Confidence            543 5556666665  2 32211   00000                         000455688999999999999988


Q ss_pred             CC----------CcEEEEEcCC------cceeeeee-ecCcceeEEEecCCC-eEEEeeCC--------CcEEEEEcccC
Q 047728          240 WD----------KTFKVWRTSD------YKCLESVI-AHDDAVNSIVAGFDG-LVFTGSAD--------GTVKVWRRELQ  293 (474)
Q Consensus       240 ~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~d--------g~i~iwd~~~~  293 (474)
                      .+          ..|++||+.+      ++. ..+. .+...+..++|+||| .|+.++.+        ..|.+||+...
T Consensus       149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             EEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence            77          5899999987      554 4444 556778889999999 67766654        37999998732


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC--cEEEeecCcccccceeeeecc----------eeeEEEEec
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG--LVNFWERELNLSHGGVLRGHK----------LAILCLVTA  361 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~----------~~v~~~~~~  361 (474)
                      +.  ..........+...+..++|+||+++++++..++  .|.+||+.++... .+...+.          ...++++++
T Consensus       228 g~--~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~  304 (662)
T 3azo_A          228 GR--FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLAN  304 (662)
T ss_dssp             SC--EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred             Cc--ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCC
Confidence            21  0012223334567899999999999888888888  5666676544322 2222221          123566678


Q ss_pred             CCEEEEEeCCCcEEEE--ECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          362 GNLVFSGSADMSICIW--RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       362 ~~~l~sgs~dg~i~iw--d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      +.+++++.. +.++||  |..+++   +..+..|...+..+. ++++...      ++++++.+....||.+.
T Consensus       305 ~~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~-s~~~~~~------~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          305 GLIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWAATL-TVSGTRA------VGVAASPRTAYEVVELD  366 (662)
T ss_dssp             SCEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEEEEE-EEETTEE------EEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEEEEE-ecCCCEE------EEEEcCCCCCCEEEEEE
Confidence            999999998 999999  555554   456777777787771 3444321      56666666655555443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.72  E-value=2.5e-17  Score=170.77  Aligned_cols=223  Identities=11%  Similarity=0.024  Sum_probs=153.9

Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc---ceeEEEecCCC-eEEEeeC---------CCcEEEEEcc
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD---AVNSIVAGFDG-LVFTGSA---------DGTVKVWRRE  291 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~v~~~~~~-~l~~~~~---------dg~i~iwd~~  291 (474)
                      +++|+|++++++ .+.|+.|++||+.+++....+..+..   .+.+++|+||| .|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            779999995544 55799999999999988777665544   48999999999 7777765         7899999987


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce------------------
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL------------------  353 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------------  353 (474)
                      .+....    ...+   ...+..++|+|||+.|+.+. ++.|++||+.++........++..                  
T Consensus        99 ~g~~~~----~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           99 NGEFVR----GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             TTEECC----SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             CCcccc----ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            543200    0111   24588899999999999885 789999999876543222122211                  


Q ss_pred             -eeEEEEecCCEEEEEeCCC----------------------------------cEEEEECCCCceE---EE---EeecC
Q 047728          354 -AILCLVTAGNLVFSGSADM----------------------------------SICIWRRKENEHI---CL---SMLTG  392 (474)
Q Consensus       354 -~v~~~~~~~~~l~sgs~dg----------------------------------~i~iwd~~~~~~~---~~---~~~~~  392 (474)
                       ...+++|||++|++++.|.                                  .|++||+.+++..   .+   ..+.+
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence             3588999999999988652                                  7889999887631   11   12346


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEecCC----CcEEEEE----ccCCCCCCCCCcccccc----cCCCCCCCc-ccc
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSGSLD----KSVKMWR----VSEQAPPLVSTTQQHPL----EGHGVAPNS-LPY  459 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D----g~i~vw~----~~~~~~~~~~~~~~~~~----~~~~~~v~~-l~~  459 (474)
                      |...+..++|+||++        ++++....    ..|.+||    +.+++.       ...+    .+|...+.. ...
T Consensus       251 ~~~~~~~~~~SpD~~--------~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~  315 (719)
T 1z68_A          251 SDYYFSWLTWVTDER--------VCLQWLKRVQNVSVLSICDFREDWQTWDC-------PKTQEHIEESRTGWAGGFFVS  315 (719)
T ss_dssp             SCEEEEEEEESSSSE--------EEEEEEESSTTEEEEEEEEECSSSSSEEC-------CGGGEEEEECSSSCSSSSSCC
T ss_pred             CcceEEEeEEeCCCe--------EEEEEeccccCeEEEEEEcccCCCCCCce-------EEEEecccccCCceEccccCC
Confidence            888999999999987        67764322    2488888    655422       1222    245544441 112


Q ss_pred             CCCCCcCCceee
Q 047728          460 APSFSSQGRICQ  471 (474)
Q Consensus       460 ~p~~s~Dg~~l~  471 (474)
                      .|+|||||+.++
T Consensus       316 ~~~~spdg~~l~  327 (719)
T 1z68_A          316 TPVFSYDAISYY  327 (719)
T ss_dssp             CCEECTTSSCEE
T ss_pred             ccEECCCCCeEE
Confidence            568999999553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1.5e-14  Score=132.12  Aligned_cols=241  Identities=9%  Similarity=0.122  Sum_probs=161.1

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      ++-....+++++  +..+++...++.|.+|+.+. +........                          ..-.++...+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~--------------------------~~~~~~~~~p   79 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGEC--------------------------GKRDSQLLYP   79 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCB--------------------------SSSTTCBSSE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEeccc--------------------------CCCcccccCc
Confidence            455668888887  55666667888999998763 222111000                          0001245678


Q ss_pred             eEEEec-CCCCEEEEEEC-CCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728          224 SSLSMS-EDQNLLYSASW-DKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       224 ~~l~~~-~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      .++++. +++.++++... ++.|.+|| .+++.+..+.. +...+.++++.+++ ++++...++.|.+||...  .    
T Consensus        80 ~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~----  152 (286)
T 1q7f_A           80 NRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--N----  152 (286)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--C----
T ss_pred             eEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC--C----
Confidence            899994 66665555533 88999999 56777666643 34568899999999 556666788999998642  1    


Q ss_pred             eeeeee--ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee-ee--cceeeEEEEecCCEEEEEeCCC-c
Q 047728          300 FFSQTL--LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL-RG--HKLAILCLVTAGNLVFSGSADM-S  373 (474)
Q Consensus       300 ~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~--~~~~v~~~~~~~~~l~sgs~dg-~  373 (474)
                       .....  ..+...+..++++++++++++...++.|++||..... ...+. .+  ....-++++++|+++++...++ .
T Consensus       153 -~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~  230 (286)
T 1q7f_A          153 -VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFN  230 (286)
T ss_dssp             -EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             -EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence             11111  1344568999999999988888889999999975432 21111 11  1233466777898888888776 9


Q ss_pred             EEEEECCCCceEEEEeecCC--ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          374 ICIWRRKENEHICLSMLTGH--SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |.+||.....   +..+..+  ...+.+++++|++.        ++++ +.|++|++|++...
T Consensus       231 i~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~~g~--------l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          231 LTIFTQDGQL---ISALESKVKHAQCFDVALMDDGS--------VVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEECTTSCE---EEEEEESSCCSCEEEEEEETTTE--------EEEE-ETTTEEEEEECSCC
T ss_pred             EEEECCCCCE---EEEEcccCCCCcceeEEECCCCc--------EEEE-CCCCeEEEEEcccc
Confidence            9999965432   3333333  33478999999997        6776 56999999998664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=2.3e-16  Score=163.79  Aligned_cols=231  Identities=10%  Similarity=-0.004  Sum_probs=157.7

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc-----eeEEEecCCC-eEEEeeCC---------CcEE
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA-----VNSIVAGFDG-LVFTGSAD---------GTVK  286 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~v~~~~~~-~l~~~~~d---------g~i~  286 (474)
                      ...++.|+|++++|+++  |++|++||+.++++...+..|...     ...+.|+||+ .|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            46689999999888886  999999999999988777776543     2347889999 77777765         5677


Q ss_pred             EEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce-------------
Q 047728          287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL-------------  353 (474)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-------------  353 (474)
                      +||+..+.       ...+..+...+...+|+|||+.|+.+ .++.|++||+.++....-...++..             
T Consensus        96 ~~d~~~~~-------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           96 IYDLNKRQ-------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEETTTTE-------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             EEECCCCc-------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence            99998643       22344566789999999999999887 5689999999876543222222221             


Q ss_pred             ------eeEEEEecCCEEEEEeCCC------------------------------------cEEEEECCC---CceEEEE
Q 047728          354 ------AILCLVTAGNLVFSGSADM------------------------------------SICIWRRKE---NEHICLS  388 (474)
Q Consensus       354 ------~v~~~~~~~~~l~sgs~dg------------------------------------~i~iwd~~~---~~~~~~~  388 (474)
                            ....++|||++|+.++.|.                                    .|++||+.+   ++.....
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence                  1267999999999875332                                    488899988   6210122


Q ss_pred             eec------CCccceEEEEEeeCCccccccceEEEEEe----cCCCcEEEEEccCCCCCCCCCcccccc--cCCCCCCCc
Q 047728          389 MLT------GHSGPVKCLAVEKDDESLSREKRWILYSG----SLDKSVKMWRVSEQAPPLVSTTQQHPL--EGHGVAPNS  456 (474)
Q Consensus       389 ~~~------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~----s~Dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~  456 (474)
                      .+.      +|...+..++|+||++        +++..    +.+..|++||+.+++..... .....+  .+|...+..
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~--------~~~~~~~r~~~~~~i~~~d~~tg~~~~~~-~~~~~l~~~~~~~~v~~  318 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQER--------ISLQWLRRIQNYSVMDICDYDESSGRWNC-LVARQHIEMSTTGWVGR  318 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTE--------EEEEEEESSTTEEEEEEEEEETTTTEEEE-CGGGCEEEECSSSCSSS
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCe--------EEEEEeCCCCCEEEEEEEECCCCccccce-eEEEEeeeccCCceEcc
Confidence            232      3788899999999998        45543    23447999999887410000 011112  334444431


Q ss_pred             -cccCCCCCcCCceee
Q 047728          457 -LPYAPSFSSQGRICQ  471 (474)
Q Consensus       457 -l~~~p~~s~Dg~~l~  471 (474)
                       ....|+|||||+.++
T Consensus       319 ~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          319 FRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             SSCCCCEECTTSSEEE
T ss_pred             CcCCCceEcCCCCEEE
Confidence             123678999999765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=3.1e-14  Score=132.79  Aligned_cols=262  Identities=10%  Similarity=0.095  Sum_probs=175.7

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCc-cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNS-GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV  186 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~-~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  186 (474)
                      -+.+.+++++  |+++++...++.+.+++.... ..+..+. .++              .++.|.+||..+++...... 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~i~~~d~~~g~~~~~~~-   86 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSK-FVYQQRGLGPI--------------EEDTILVIDPNNAEILQSSG-   86 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTT-SCBSCGGGCSC--------------CSCCEEEECTTTCCEEEEEC-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcc-eeecccccccc--------------cCCcEEEEECCCCeEEeccC-
Confidence            4788888877  778888888876666543322 1122221 111              47889999988776432110 


Q ss_pred             cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-eeeeee------
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-CLESVI------  259 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~------  259 (474)
                                                    .++......++++++++++++...++.|++||..... .+..+.      
T Consensus        87 ------------------------------~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g  136 (329)
T 3fvz_A           87 ------------------------------KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG  136 (329)
T ss_dssp             ------------------------------TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred             ------------------------------CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC
Confidence                                          0144578899999999988888889999999975442 444442      


Q ss_pred             ---ecCcceeEEEecC-CC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeee----------cccccEEEEEEcCC-CC
Q 047728          260 ---AHDDAVNSIVAGF-DG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLL----------KQECAVTALAISPD-AA  322 (474)
Q Consensus       260 ---~~~~~v~~v~~~~-~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~-~~  322 (474)
                         .+-.....++++| ++ ++++.+ .++.|++||.. +..      ...+.          .+-.....++++|+ +.
T Consensus       137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~------~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~  209 (329)
T 3fvz_A          137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF------VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ  209 (329)
T ss_dssp             CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE------EEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred             CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE------EEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence               2334688999999 67 555554 58999999943 211      11111          12234899999998 77


Q ss_pred             EEEEEcCCCcEEEeecCcccccceeee-ecc--eeeEEEEe------cCCEEEEEeCCCcEEEEECCCCceEEEEee---
Q 047728          323 IVYCGSSDGLVNFWERELNLSHGGVLR-GHK--LAILCLVT------AGNLVFSGSADMSICIWRRKENEHICLSML---  390 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~--~~v~~~~~------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---  390 (474)
                      ++++...++.|++||..++.....+.. .+.  ...+++.|      +++..++...+..|++||..+++.  +..+   
T Consensus       210 l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~  287 (329)
T 3fvz_A          210 LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPV  287 (329)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCS
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCC
Confidence            777778889999999985544332211 122  22234444      444444445566999999988873  4444   


Q ss_pred             cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .++...+.+|+++|++.        ++++...+++|++|++...
T Consensus       288 ~~~~~~p~~ia~~~dG~--------lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          288 RKHFDMPHDIVASEDGT--------VYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             SSCCSSEEEEEECTTSE--------EEEEESSSCCEEEEEEEEC
T ss_pred             CCccCCeeEEEECCCCC--------EEEEECCCCEEEEEeCCcc
Confidence            36677899999999997        8999999999999998754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=9.6e-16  Score=146.74  Aligned_cols=220  Identities=8%  Similarity=-0.065  Sum_probs=139.8

Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE-------------------EEecCCC-eEEEe-----
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS-------------------IVAGFDG-LVFTG-----  279 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------v~~~~~~-~l~~~-----  279 (474)
                      .+.|+|+++.|+.++.++.|++||+.+++.......+......                   +.++|++ .++..     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            4789999999999999999999999988766555444332222                   2456666 33322     


Q ss_pred             eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCC------CcEEEeecCcccccceeeeec-
Q 047728          280 SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSD------GLVNFWERELNLSHGGVLRGH-  351 (474)
Q Consensus       280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~-  351 (474)
                      ..+..|.+||+..+..       ..+..+...+..+.|+| ++..|+..+.+      ..|.+||+...... .+.... 
T Consensus       165 ~~~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~  236 (396)
T 3c5m_A          165 NPTCRLIKVDIETGEL-------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE  236 (396)
T ss_dssp             CCCEEEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred             CCcceEEEEECCCCcE-------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence            4566789999875432       12224566789999999 78877665543      36888888654322 222211 


Q ss_pred             --ceeeEEEEecCCEEEEEeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEee-CCccccccceEEEEEec--
Q 047728          352 --KLAILCLVTAGNLVFSGSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEK-DDESLSREKRWILYSGS--  421 (474)
Q Consensus       352 --~~~v~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~~~~l~s~s--  421 (474)
                        ......++++|++|+.++.+     +.|++||+.+++...+....+    .. +.|+| +++        +++.++  
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~--------~l~~~~~~  303 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGS--------LMVGDGCD  303 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSS--------EEEEEECC
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCc--------eEEEecCC
Confidence              22336788899987776544     449999998887544433332    23 88999 988        666644  


Q ss_pred             --------------CCCcEEEEEccCCCCCCCCCcccccccCCCCCC-------CccccCCCCCcCCceeecc
Q 047728          422 --------------LDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAP-------NSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       422 --------------~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-------~~l~~~p~~s~Dg~~l~~~  473 (474)
                                    .+..|++||+.++...        .+..+...+       ......|+|+|||+.|+..
T Consensus       304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  368 (396)
T 3c5m_A          304 APVDVADADSYNIENDPFLYVLNTKAKSAQ--------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT  368 (396)
T ss_dssp             C----------CCCCCCEEEEEETTTTBCC--------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             cceeeccccccccCCCCcEEEEecccCceE--------EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence                          3478999999776321        222222211       1123456899999877643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.5e-14  Score=135.04  Aligned_cols=240  Identities=13%  Similarity=0.053  Sum_probs=158.8

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC------------------------CcEEEEEcCCcceeeeee-ecCcceeEEEecCC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD------------------------KTFKVWRTSDYKCLESVI-AHDDAVNSIVAGFD  273 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~  273 (474)
                      ....+.+++++++++++++...+                        ++|.+||..+++.+..+. .+-..+..+++.++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            34679999999999998888777                        479999998888876654 23457889999999


Q ss_pred             C-eEEEeeCCCcEEEEEcccCCCceeeeeeee-----eecccccEEEEEEcC-CCCEEEEEc-CCCcEEEeecCcccccc
Q 047728          274 G-LVFTGSADGTVKVWRRELQGKGTKHFFSQT-----LLKQECAVTALAISP-DAAIVYCGS-SDGLVNFWERELNLSHG  345 (474)
Q Consensus       274 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~~~-~~~~l~~~~-~dg~i~v~d~~~~~~~~  345 (474)
                      + ++++...++.|++||........ ..+...     ...+......++++| ++.++++.+ .++.|++||.... ...
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-~~~  179 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPL-LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-FVT  179 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCS-EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-EEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEE-EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-EEE
Confidence            9 67777778999999975331110 000000     023344689999999 788888876 6899999995433 222


Q ss_pred             eeee-e----------cceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728          346 GVLR-G----------HKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK  413 (474)
Q Consensus       346 ~~~~-~----------~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  413 (474)
                      .... +          ....-+++.++ +.++++...++.|++||..+++.........+...+.+++|+| +.....++
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence            2211 1          11334677777 6777777788999999998777443333345677889999999 33000000


Q ss_pred             eEEEEEecCCCcEEEEEccCCCCCCCCCcccccc---cCCCCCCCccccCCCCCcCCceeecc
Q 047728          414 RWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPL---EGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       414 ~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      + .+++...+..|++|++.+++.       ...+   .++...+.++    +++|||.++++.
T Consensus       259 ~-~~v~~~~~~~v~~~~~~~g~~-------~~~~~~~~~~~~~p~~i----a~~~dG~lyvad  309 (329)
T 3fvz_A          259 K-PYFGDQEPVQGFVMNFSSGEI-------IDVFKPVRKHFDMPHDI----VASEDGTVYIGD  309 (329)
T ss_dssp             C-CCTTCSCCCCEEEEETTTCCE-------EEEECCSSSCCSSEEEE----EECTTSEEEEEE
T ss_pred             C-EEeccCCCcEEEEEEcCCCeE-------EEEEcCCCCccCCeeEE----EECCCCCEEEEE
Confidence            0 222333455899999987732       2222   3444456666    678899888764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=2.6e-13  Score=123.82  Aligned_cols=230  Identities=12%  Similarity=0.162  Sum_probs=156.7

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-cccccc------cCccCEEEEEe-c-CCEEEEEeC--CCeEEEEecC
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-EFSGFK------SNSGLVKAIVI-S-NEKIFSGHQ--DGKIRVWKVS  176 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-~~~~~~------~h~~~V~~i~~-~-~~~l~s~~~--dg~i~vwd~~  176 (474)
                      -..+.+++++  ++++++...++.|.+||... .+..+.      .+...+..+++ . ++.|+.+..  ++.|++|+. 
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-  107 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  107 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence            3456777765  77888888899999998553 222222      34467889999 3 455665553  889999994 


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE  256 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  256 (474)
                      .++.....  .                             ..+...+.++++.++++++++...++.|.+||. +++.+.
T Consensus       108 ~g~~~~~~--~-----------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~  155 (286)
T 1q7f_A          108 YGQFVRKF--G-----------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLH  155 (286)
T ss_dssp             TSCEEEEE--C-----------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEE
T ss_pred             CCcEEEEe--c-----------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEE
Confidence            33322111  0                             013456789999999988887777899999995 456555


Q ss_pred             eee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeee--cccccEEEEEEcCCCCEEEEEcCCC
Q 047728          257 SVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL--KQECAVTALAISPDAAIVYCGSSDG  331 (474)
Q Consensus       257 ~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~dg  331 (474)
                      .+.  .+...+..+++++++ ++++...++.|++||....       ....+.  ++...+..++++++++++++...++
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~  228 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNN  228 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence            554  334568999999999 5566667899999997421       112222  2235789999999999888887776


Q ss_pred             -cEEEeecCcccccceeeeecc----eeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728          332 -LVNFWERELNLSHGGVLRGHK----LAILCLVTAGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       332 -~i~v~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                       .|.+||.... ... .+..+.    ...+++.++|+++++ +.|+.|++|+....
T Consensus       229 ~~i~~~~~~g~-~~~-~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          229 FNLTIFTQDGQ-LIS-ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CEEEEECTTSC-EEE-EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEEEECCCCC-EEE-EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence             9999996543 222 222221    224667788887776 67999999998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=6.5e-15  Score=140.92  Aligned_cols=283  Identities=10%  Similarity=-0.004  Sum_probs=167.6

Q ss_pred             EEEEcCCEEEEeeCC-C--cEEEEeCCc-cccccccCccC-EEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          115 SLAAAGDLLYTGSDS-K--NIRVWKNQR-EFSGFKSNSGL-VKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       115 ~~~~~~~~l~tgs~d-g--~v~vwd~~~-~~~~~~~h~~~-V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      +++++|++|+..... +  .|.+||... ....+..+... ...+.|+  +++|+.++.++.|.+|++.+++........
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~  121 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD  121 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence            355678887766543 3  577778542 22333333333 2225566  778999999999999999887643322211


Q ss_pred             ccC-ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-----ECCCcEEEEEcCCcceeeeeeec
Q 047728          188 TLP-TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-----SWDKTFKVWRTSDYKCLESVIAH  261 (474)
Q Consensus       188 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~  261 (474)
                      ... .....+.... ......       .      ....+.|+|+++.++.+     ..+..|.+||+.+++..... .+
T Consensus       122 ~~~~~~g~~l~~~~-~~~~~~-------~------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~  186 (396)
T 3c5m_A          122 EEWKGYGTWVANSD-CTKLVG-------I------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD  186 (396)
T ss_dssp             TTEEEEEEEEECTT-SSEEEE-------E------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred             cccCCCCCEEEecc-CCcccc-------c------cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence            000 0000000000 000000       0      00124578888877654     35678999999988765444 56


Q ss_pred             CcceeEEEecC-CC-eEEEeeCC------CcEEEEEcccCCCceeeeeeeeeecc--cccEEEEEEcCCCCEEEEEcCC-
Q 047728          262 DDAVNSIVAGF-DG-LVFTGSAD------GTVKVWRRELQGKGTKHFFSQTLLKQ--ECAVTALAISPDAAIVYCGSSD-  330 (474)
Q Consensus       262 ~~~v~~v~~~~-~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d-  330 (474)
                      ...+..+.|+| ++ .|+..+.+      ..|.+||+.....       ..+..+  ...+..++|+|+++.|+.++.+ 
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-------EESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-------eEeeccCCCccccceEECCCCCEEEEEecCC
Confidence            77889999999 66 55555443      3577787753321       111112  3358889999999987766543 


Q ss_pred             ----CcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEe----------------CCCcEEEEECCCCceEEEEe
Q 047728          331 ----GLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGS----------------ADMSICIWRRKENEHICLSM  389 (474)
Q Consensus       331 ----g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs----------------~dg~i~iwd~~~~~~~~~~~  389 (474)
                          +.|++||+.++.... +....... ..+++ ++++++.++                .+..|++||+.+++..   .
T Consensus       260 ~~~~~~l~~~d~~~g~~~~-l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~  334 (396)
T 3c5m_A          260 GQTDRVIYKANPETLENEE-VMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---K  334 (396)
T ss_dssp             TTCCEEEEEECTTTCCEEE-EEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---E
T ss_pred             CCccceEEEEECCCCCeEE-eeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---E
Confidence                449999998764321 11111122 77888 999888765                3478999999887643   3


Q ss_pred             ecCCcc-----------ceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEcc
Q 047728          390 LTGHSG-----------PVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVS  432 (474)
Q Consensus       390 ~~~h~~-----------~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~  432 (474)
                      +..+..           .+..++|+|+++        .|+.+ ..++...||.+.
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          335 LCKHSTSWDVLDGDRQITHPHPSFTPNDD--------GVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             EEECCCCCCCBTTBSSTTCCCCEECTTSS--------EEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCccccccccccCCCCCceEccCCC--------eEEEEecCCCCceEEEEE
Confidence            333433           256788999998        45444 456777777665

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.65  E-value=9.5e-14  Score=129.68  Aligned_cols=252  Identities=8%  Similarity=0.094  Sum_probs=162.2

Q ss_pred             EEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728          113 IYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGT  188 (474)
Q Consensus       113 i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  188 (474)
                      |.+++++  +..++..+.++.++.| ..+....+..+...+.+++|+  ++.++++..++.|.+||.++++.....    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~----   82 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF----   82 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE----
T ss_pred             cceeeecCCccceeEEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe----
Confidence            3444444  3345555667888888 444555566677778899997  455667788899999998876542111    


Q ss_pred             cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC----CcEEEEEcCCcceeeeee--ecC
Q 047728          189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD----KTFKVWRTSDYKCLESVI--AHD  262 (474)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~--~~~  262 (474)
                                                  ..+...+.+++++++++++++...+    +.|.+||..+++....+.  .+.
T Consensus        83 ----------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           83 ----------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             ----------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             ----------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence                                        1145679999999999888777666    689999988776543332  234


Q ss_pred             cceeEEEecCCCeEEEeeCC-------CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEE
Q 047728          263 DAVNSIVAGFDGLVFTGSAD-------GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVN  334 (474)
Q Consensus       263 ~~v~~v~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~  334 (474)
                      ..+.++++.+++.++.+...       +.|..+|.....  .     ..+......+..++|+|+++.|++ ...++.|.
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~-----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--V-----TPIIQNISVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--E-----EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--E-----EEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence            57899999999954444442       345445443211  1     111122345788999999986654 45678999


Q ss_pred             EeecCcc-cccce----ee---eec-ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc------ceEE
Q 047728          335 FWERELN-LSHGG----VL---RGH-KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG------PVKC  399 (474)
Q Consensus       335 v~d~~~~-~~~~~----~~---~~~-~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~------~v~~  399 (474)
                      +||+... .....    ..   .++ ...-+++.++|+++++...++.|.+||.. ++.  +..+..+..      .+.+
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~--~~~~~~~~~~~g~~~~~~~  284 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP--IGQILIPGRDEGHMLRSTH  284 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE--EEEEECTTGGGTCSCBCCE
T ss_pred             EEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE--EEEEEcCCCccccccCcce
Confidence            9998642 21111    01   111 12235666778888888788999999985 442  333333322      6899


Q ss_pred             EEEeeCCc
Q 047728          400 LAVEKDDE  407 (474)
Q Consensus       400 l~~~~~~~  407 (474)
                      ++|+|++.
T Consensus       285 ~~~~~dg~  292 (333)
T 2dg1_A          285 PQFIPGTN  292 (333)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCC
Confidence            99999876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=2.3e-13  Score=127.77  Aligned_cols=250  Identities=14%  Similarity=0.114  Sum_probs=161.0

Q ss_pred             EEEEEcCCEEEEee---------CCCcEEEEeCCcc-ccccccCccCEEEEEec--CCEEEEEeCC---Ce--EEEEecC
Q 047728          114 YSLAAAGDLLYTGS---------DSKNIRVWKNQRE-FSGFKSNSGLVKAIVIS--NEKIFSGHQD---GK--IRVWKVS  176 (474)
Q Consensus       114 ~~~~~~~~~l~tgs---------~dg~v~vwd~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~--i~vwd~~  176 (474)
                      ...+++|+.|+...         .++.|.+|+.... ...+    ..+..+.|+  +++|+..+.+   +.  |.+|++.
T Consensus        18 ~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~   93 (347)
T 2gop_A           18 SDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE   93 (347)
T ss_dssp             EEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT
T ss_pred             ccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC
Confidence            33334887766542         2567888985532 2223    567788888  6678877654   33  6777776


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC---------------
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD---------------  241 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---------------  241 (474)
                      +++....                                 ..+.. +..++|+|+++.|+.++.+               
T Consensus        94 ~g~~~~l---------------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           94 TLSSKKI---------------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             TTEEEEE---------------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             CCceEEE---------------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            6543211                                 11223 8899999999998887642               


Q ss_pred             ------------CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCC-------cEEEEEcccCCCceeeeee
Q 047728          242 ------------KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADG-------TVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       242 ------------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~  302 (474)
                                  ..|.+||+.+++.+..+.. . .+..+.|+|++.++++..++       ...||.+. ...  .    
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~--~----  210 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK--E----  210 (347)
T ss_dssp             C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE--E----
T ss_pred             eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc--e----
Confidence                        5799999998887455555 4 88899999999545554432       45666655 221  1    


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCC--------CcEEEeecCcccccceeeeecceee---EEEEecCCEEEEEeCC
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSD--------GLVNFWERELNLSHGGVLRGHKLAI---LCLVTAGNLVFSGSAD  371 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~sgs~d  371 (474)
                      ..+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  ++. ...+...+...+   ..++ ++ ++++++.+
T Consensus       211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred             EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence            111222 344444  8999988877644        3688888  332 222333333333   4455 66 88999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE-EEEEcc
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV-KMWRVS  432 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i-~vw~~~  432 (474)
                      +.++|| +.+++.   ..+..+...|.+++|+|  .        ++++++.++.. .||.+.
T Consensus       283 ~~~~l~-~~~g~~---~~~~~~~~~v~~~~~s~--~--------~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          283 GSVNLY-IWDGEI---KPIAKGRHWIMGFDVDE--I--------VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             TEEEEE-EESSSE---EEEECSSSEEEEEEESS--S--------EEEEEECSSSCCEEEEES
T ss_pred             CcEEEE-EcCCce---EEEecCCCeEEeeeeeC--c--------EEEEEcCCCChHHheEeC
Confidence            999999 875542   23344577899999998  4        67777777765 888886

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.62  E-value=4.2e-14  Score=145.11  Aligned_cols=265  Identities=11%  Similarity=0.058  Sum_probs=165.8

Q ss_pred             EcCCE-EEEeeC-CCcEEEEeCC----cccccccc-----CccCEEEEEec--CCEEEEEeCC----------CeEEEEe
Q 047728          118 AAGDL-LYTGSD-SKNIRVWKNQ----REFSGFKS-----NSGLVKAIVIS--NEKIFSGHQD----------GKIRVWK  174 (474)
Q Consensus       118 ~~~~~-l~tgs~-dg~v~vwd~~----~~~~~~~~-----h~~~V~~i~~~--~~~l~s~~~d----------g~i~vwd  174 (474)
                      |+|++ |+..+. +..|.+|+..    .....+..     |...+..++|+  ++.|+.++.|          ..|++|+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence            78887 665554 6677777765    55555655     67788899998  6788888876          5899999


Q ss_pred             cCC------CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee-eccCCeeEEEecCCCCEEEEEECCC-----
Q 047728          175 VSS------KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI-KHFDAISSLSMSEDQNLLYSASWDK-----  242 (474)
Q Consensus       175 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg-----  242 (474)
                      +.+      ++...                                 +. .+...+..++|+|||++|+.++.++     
T Consensus       168 ~~~~~~~~~~~~~~---------------------------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~  214 (662)
T 3azo_A          168 LDGSAAADRSAVRE---------------------------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW  214 (662)
T ss_dssp             TTSTTTTCGGGSEE---------------------------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred             CCCCccccCCceeE---------------------------------EEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence            987      33211                                 11 2445677889999999999887553     


Q ss_pred             ---cEEEEEcC-Cc---ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc---
Q 047728          243 ---TFKVWRTS-DY---KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA---  311 (474)
Q Consensus       243 ---~i~iwd~~-~~---~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---  311 (474)
                         .|++||+. ++   +.......+...+..+.|+||| +++++..++..+||.+.......    ......+...   
T Consensus       215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~----~~l~~~~~~~~~p  290 (662)
T 3azo_A          215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA----TQLCRREEEFAGP  290 (662)
T ss_dssp             TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE----EESSCCSSBSSCC
T ss_pred             CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce----eecccccccccCc
Confidence               79999998 56   4444444557889999999999 77777888854554443211111    1111111111   


Q ss_pred             -----EEEEEEcCCCCEEEEEcCCCcEEEe--ecCcccccceeeeecceeeEEE-EecCCEEE--EEeCCC--cEEEEEC
Q 047728          312 -----VTALAISPDAAIVYCGSSDGLVNFW--ERELNLSHGGVLRGHKLAILCL-VTAGNLVF--SGSADM--SICIWRR  379 (474)
Q Consensus       312 -----v~~l~~~~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~--sgs~dg--~i~iwd~  379 (474)
                           +..++|+|++.+++++.. +.+++|  |+..+.  ...+..+...+..+ +++++.++  +++.+.  .|.+||+
T Consensus       291 ~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          291 LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence                 567899999999999998 999999  544443  23444555566666 77766443  334444  4556677


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      .+++...  ....+...+....+.+...        +.+....+..|..|-+.
T Consensus       368 ~~g~~~~--l~~~~~~~~~~~~~~~~~~--------~~~~~~dg~~i~~~~~~  410 (662)
T 3azo_A          368 VTGRART--IGARHTDPVDPAYYPEPQI--------RTFTAPDGREIHAHIYP  410 (662)
T ss_dssp             TTCCEEE--EESCCCCSSCGGGSCCCEE--------EEEECTTSCEEEEEEEC
T ss_pred             CCCceEE--eecCCcccCCccccCcceE--------EEEEcCCCCEEEEEEEC
Confidence            6776322  2233333333222332222        44454444467666553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.62  E-value=4.3e-13  Score=133.24  Aligned_cols=275  Identities=10%  Similarity=0.050  Sum_probs=185.5

Q ss_pred             EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC--CCCcceeeee
Q 047728          113 IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS--SKDASIHKRV  186 (474)
Q Consensus       113 i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~  186 (474)
                      ++...+.+.++++...++.|.++|..  +.+..+.. ...+..+.++  ++++++++.|+.|.+||+.  +.+...... 
T Consensus       160 ~~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-  237 (567)
T 1qks_A          160 MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-  237 (567)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-
T ss_pred             ccccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-
Confidence            33334445677788889999999954  34444443 3356678887  7799999999999999996  443322111 


Q ss_pred             cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec----CCCCEEEEEEC-CCcEEEEEcCCcceeeeeeec
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS----EDQNLLYSASW-DKTFKVWRTSDYKCLESVIAH  261 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~  261 (474)
                                                      .......++|+    |+|++++++.. +++|.++|..+.+.+..+...
T Consensus       238 --------------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~  285 (567)
T 1qks_A          238 --------------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  285 (567)
T ss_dssp             --------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             --------------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence                                            11234689999    69998887764 599999999999988876532


Q ss_pred             ----------Cc-ceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          262 ----------DD-AVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       262 ----------~~-~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                                .. .+..+..++++  .++....+|.|.++|......     +.............+.|+|++++++++.
T Consensus       286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----~~v~~i~~~~~~~d~~~~pdgr~~~va~  360 (567)
T 1qks_A          286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----LKTTEISAERFLHDGGLDGSHRYFITAA  360 (567)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----EEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred             ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----ceeeeeeccccccCceECCCCCEEEEEe
Confidence                      12 56788888876  566667789999999864332     1122223445677899999999887655


Q ss_pred             -CCCcEEEeecCcccccceeee----ecceeeEE-EEecCCEE-EEEe-CCCcEEEEECCCCc-----eEEEEeecCCcc
Q 047728          329 -SDGLVNFWERELNLSHGGVLR----GHKLAILC-LVTAGNLV-FSGS-ADMSICIWRRKENE-----HICLSMLTGHSG  395 (474)
Q Consensus       329 -~dg~i~v~d~~~~~~~~~~~~----~~~~~v~~-~~~~~~~l-~sgs-~dg~i~iwd~~~~~-----~~~~~~~~~h~~  395 (474)
                       .++.|.++|..+++....+..    .|...... +.+++..+ +++. .++.|.++|....+     ...+..+.....
T Consensus       361 ~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~  440 (567)
T 1qks_A          361 NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG  440 (567)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred             CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence             578899999998765443333    34322223 46664444 4443 46899999998722     223455554433


Q ss_pred             ceEEEEEeeCCccccccceEEEEEecC-------CCcEEEEEccCC
Q 047728          396 PVKCLAVEKDDESLSREKRWILYSGSL-------DKSVKMWRVSEQ  434 (474)
Q Consensus       396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~-------Dg~i~vw~~~~~  434 (474)
                      .-..+..+|+++        +|+....       ..+|.|+|+.+.
T Consensus       441 g~~~i~~~p~~~--------~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          441 GSLFIKTHPNSQ--------YLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CCCCEECCTTCS--------EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCEEEEeCCCCC--------eEEEecCCCCCcccCceEEEEECCcc
Confidence            334577899988        5666442       459999999876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=2.1e-13  Score=127.00  Aligned_cols=256  Identities=9%  Similarity=0.053  Sum_probs=171.5

Q ss_pred             eCCCcEEEEeCCc--ccccc-c-----cCccCEEEEEecCCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          127 SDSKNIRVWKNQR--EFSGF-K-----SNSGLVKAIVISNEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       127 s~dg~v~vwd~~~--~~~~~-~-----~h~~~V~~i~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      +.++.|.+||...  ....+ .     ........+.+.++.++.+ ..++.|.+||..+++......            
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~------------   81 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT------------   81 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence            3478999999552  22211 1     1234567788886655544 457899999999876543221            


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecC-----cceeEEEec
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHD-----DAVNSIVAG  271 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~  271 (474)
                                           .......+++++++ .++++. .++.|.+||..+++....+....     .....+++ 
T Consensus        82 ---------------------~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           82 ---------------------GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-  138 (328)
T ss_dssp             ---------------------CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred             ---------------------CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence                                 23457789998888 455555 89999999999998887776433     14567777 


Q ss_pred             CCCeEEEee--CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----------CcEEEeecC
Q 047728          272 FDGLVFTGS--ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----------GLVNFWERE  339 (474)
Q Consensus       272 ~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----------g~i~v~d~~  339 (474)
                      .++.++++.  .++.|.+||+.+...      ..... .......++++|++++++++..+          +.|.++|..
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~~------~~~i~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDKV------VDELT-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTEE------EEEEE-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCeE------EEEEE-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence            455555554  488999999875432      11111 12345678999999977776554          789999998


Q ss_pred             cccccceeee--ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728          340 LNLSHGGVLR--GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWIL  417 (474)
Q Consensus       340 ~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l  417 (474)
                      +......+..  +....-+++++++++|+++..  .|.+||..+++......+........+++++|++..       ++
T Consensus       212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~-------ly  282 (328)
T 3dsm_A          212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGE-------VY  282 (328)
T ss_dssp             TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCC-------EE
T ss_pred             CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCe-------EE
Confidence            7754433322  223455788888999888765  899999987763211112222456889999995442       66


Q ss_pred             EEe----cCCCcEEEEEccCC
Q 047728          418 YSG----SLDKSVKMWRVSEQ  434 (474)
Q Consensus       418 ~s~----s~Dg~i~vw~~~~~  434 (474)
                      ++.    ..++.|.+|+.. +
T Consensus       283 va~~~~y~~~~~V~v~d~~-g  302 (328)
T 3dsm_A          283 VADAIDYQQQGIVYRYSPQ-G  302 (328)
T ss_dssp             EEECTTSSSEEEEEEECTT-C
T ss_pred             EEcccccccCCEEEEECCC-C
Confidence            666    678999999987 5

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.60  E-value=4.7e-13  Score=138.29  Aligned_cols=231  Identities=10%  Similarity=-0.007  Sum_probs=151.1

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCC-----cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCc--------
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDK-----TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGT--------  284 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~--------  284 (474)
                      |...+..++|+|||++|+.+..++     .|++||+.+++.+.....+ ..+..++|+||+ .|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444688999999999998776543     8999999999876643322 236789999999 7777777665        


Q ss_pred             --------EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-----CCcEEEeecCc------ccccc
Q 047728          285 --------VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-----DGLVNFWEREL------NLSHG  345 (474)
Q Consensus       285 --------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~v~d~~~------~~~~~  345 (474)
                              |++|++.......  ........+...+..+.|+|++++|+..+.     +..|++||+.+      +....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~--~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSED--ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccCCCCEEEEEECCCCcccc--eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                    9999986543211  111122234556889999999999887764     56899999976      42222


Q ss_pred             eeeeecc-eeeEEEEecCCEEEEEeCC----CcEEEEECCCCceEEEEeecCCcc--ceEEEEEeeCCccccccceEEEE
Q 047728          346 GVLRGHK-LAILCLVTAGNLVFSGSAD----MSICIWRRKENEHICLSMLTGHSG--PVKCLAVEKDDESLSREKRWILY  418 (474)
Q Consensus       346 ~~~~~~~-~~v~~~~~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~  418 (474)
                      ..+..+. .....++++|+.|+..+.+    +.|.+||+.++.......+..|..  .+..++|++++.        +++
T Consensus       280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------lv~  351 (710)
T 2xdw_A          280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF--------LVL  351 (710)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE--------EEE
T ss_pred             EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE--------EEE
Confidence            3333333 2334578888887776653    369999998764201123334433  688899987766        888


Q ss_pred             EecCCCcEEE--EEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          419 SGSLDKSVKM--WRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       419 s~s~Dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      +...|+..+|  |++.++.       ..+.+..+...+..+    +++||++.+.
T Consensus       352 ~~~~~g~~~l~~~~~~~g~-------~~~~l~~~~~~v~~~----~~s~d~~~l~  395 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGA-------LLKIFPLEVGSVVGY----SGQKKDTEIF  395 (710)
T ss_dssp             EEEETTEEEEEEEETTTCC-------EEEEECCCSSEEEEE----ECCTTCSEEE
T ss_pred             EEEECCEEEEEEEECCCCC-------EEEecCCCCceEEEE----ecCCCCCEEE
Confidence            8888986555  5554442       223344444455555    5566775443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=3.4e-13  Score=127.29  Aligned_cols=270  Identities=11%  Similarity=0.041  Sum_probs=171.4

Q ss_pred             eeeeeeeeecCcEEEEEEcCCEEEEeeC----------CCcEEEEeCC--cccccccc------CccCEEEEEec--CCE
Q 047728          101 VLIGSLVREEGHIYSLAAAGDLLYTGSD----------SKNIRVWKNQ--REFSGFKS------NSGLVKAIVIS--NEK  160 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~~~~l~tgs~----------dg~v~vwd~~--~~~~~~~~------h~~~V~~i~~~--~~~  160 (474)
                      +++.++..+..+=..++++|++|+++..          ++.|.+||..  +.+..+..      +......++++  +++
T Consensus        42 ~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           42 KFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             CEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             eEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            3455565555552345556889988863          6779999965  33333322      12334567776  778


Q ss_pred             EEEEeC--CCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEE
Q 047728          161 IFSGHQ--DGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLY  236 (474)
Q Consensus       161 l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~  236 (474)
                      |+++..  ++.|.+||+.+++.... ..                                 + .....+.+.|++ ..++
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~---------------------------------~-~~~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTA---------------------------------A-AGCWSVIPQPNRPRSFM  167 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGG---------------------------------G-TTEEEEEECTTSSSEEE
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEec---------------------------------C-CCcceeEEcCCCCeeEE
Confidence            888764  68999999998754321 11                                 1 112234566754 6778


Q ss_pred             EEECCCcEEEEEcCC-cceeee------eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee--e
Q 047728          237 SASWDKTFKVWRTSD-YKCLES------VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL--L  306 (474)
Q Consensus       237 s~s~dg~i~iwd~~~-~~~~~~------~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~  306 (474)
                      +.+.||.+.+|+... ++....      +.....++ .+.+.+++ .++..+.++.|.++|+...............  .
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~  246 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED  246 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence            888999999999865 554422      11222222 22334555 5666678899999998643321100000000  0


Q ss_pred             cc----cccEEEEEEcCCCCEEEEEcC-----------CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728          307 KQ----ECAVTALAISPDAAIVYCGSS-----------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       307 ~~----~~~v~~l~~~~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ..    ......++|+|+++.++++..           .+.|.+||+.+.+.+..+..+. ...+.++++|++|++++. 
T Consensus       247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-  324 (361)
T 2oiz_A          247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-  324 (361)
T ss_dssp             HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred             cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence            00    111123789999888887643           3479999999887766555555 667889999999998887 


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      +.|.+||..+++...+..+..+......++++|++.
T Consensus       325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999999983225667666777789999999975

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=2e-13  Score=128.13  Aligned_cols=183  Identities=11%  Similarity=0.080  Sum_probs=123.5

Q ss_pred             CeeEEEecCCCCEEEEEECC---C--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC-------------
Q 047728          222 AISSLSMSEDQNLLYSASWD---K--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD-------------  282 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d-------------  282 (474)
                      .+..++|+|||+.|+.++.+   +  .|.+||+.+++....... .. +..+.|+|++ .|+.++.+             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            57789999999999887754   2  488889888776554443 34 8999999999 66666532             


Q ss_pred             --------------CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-------cEEEeecCcc
Q 047728          283 --------------GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-------LVNFWERELN  341 (474)
Q Consensus       283 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------~i~v~d~~~~  341 (474)
                                    ..|.+||+..+..      ...+.. . .+..++|+|++ +++++..+.       ...+|.++++
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~------~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~  208 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEV------IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG  208 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEE------EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred             ceeecCcccccCccceEEEEECCCCeE------EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence                          5688888864321      011112 2 67889999999 777775542       3445444433


Q ss_pred             cccceeeeecceeeEEEEecCCEEEEEeCC--------CcEEEEECCCCceEEEEeecCCccceEE-EEEeeCCcccccc
Q 047728          342 LSHGGVLRGHKLAILCLVTAGNLVFSGSAD--------MSICIWRRKENEHICLSMLTGHSGPVKC-LAVEKDDESLSRE  412 (474)
Q Consensus       342 ~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~  412 (474)
                      . ...+ ..+ ..+..++++|++|+.++.+        ..|.+||  +++  .......|...+.. +.|+ ++      
T Consensus       209 ~-~~~l-~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--~~~l~~~~~~~~~~~~~~s-dg------  274 (347)
T 2gop_A          209 K-EEKM-FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE--VMGILDEVDRGVGQAKIKD-GK------  274 (347)
T ss_dssp             E-EEEE-EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC--EEESSTTCCSEEEEEEEET-TE------
T ss_pred             c-eEEe-ccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc--eEeccccCCcccCCccEEc-Cc------
Confidence            2 2222 233 5556669999988877754        3688888  444  23344566778886 8898 54      


Q ss_pred             ceEEEEEecCCCcEEEEEccC
Q 047728          413 KRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       413 ~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                         ++++++.++.++|| +.+
T Consensus       275 ---~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          275 ---VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             ---EEEEEEETTEEEEE-EES
T ss_pred             ---EEEEEecCCcEEEE-EcC
Confidence               58888899999999 874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=4.1e-13  Score=121.50  Aligned_cols=210  Identities=10%  Similarity=0.022  Sum_probs=147.8

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc-CCeeEEEecCCCCEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF-DAISSLSMSEDQNLLY  236 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~  236 (474)
                      ++.|++++.|+.|.+||.++++.......                                +. ..+.++.+.|+|++|+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------------------------------~~~~~~~~~~~~pdG~ilv   52 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--------------------------------EKGWECNSVAATKAGEILF   52 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEEC--------------------------------CTTCCCCEEEECTTSCEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCC--------------------------------CccCCCcCeEECCCCCEEE
Confidence            56788999999999999988876544332                                22 3578899999999888


Q ss_pred             EEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeC-CCcEEEEEcccCCCceeeeeee-eeecccccE
Q 047728          237 SASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSA-DGTVKVWRRELQGKGTKHFFSQ-TLLKQECAV  312 (474)
Q Consensus       237 s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v  312 (474)
                        +.++.|..||. +++.+..+..+. ..+.++.+.+++ .+++.+. ++.|..+|..  .+........ ....+....
T Consensus        53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~  127 (276)
T 3no2_A           53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQF  127 (276)
T ss_dssp             --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSC
T ss_pred             --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccc
Confidence              45788999998 899999888753 478888999999 6666565 6667666642  2211111111 111222345


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC
Q 047728          313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG  392 (474)
Q Consensus       313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  392 (474)
                      ..+++.++++++++...++.|.+||.+ ++.+.............+.+++++++++..++.|..+|..+++.  +..+..
T Consensus       128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~--~w~~~~  204 (276)
T 3no2_A          128 RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI--VRRVNA  204 (276)
T ss_dssp             SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE--EEEEEG
T ss_pred             cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE--EEEecC
Confidence            566789999999999999999999998 65554433322233345567899999999889999999998874  444433


Q ss_pred             Cc------cceEEEEEeeCCc
Q 047728          393 HS------GPVKCLAVEKDDE  407 (474)
Q Consensus       393 h~------~~v~~l~~~~~~~  407 (474)
                      +.      ..+..++..+++.
T Consensus       205 ~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          205 NDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             GGSBSCCCSEEEEEEECTTSC
T ss_pred             CCCCCccccccccceEcCCCC
Confidence            21      2378888888887

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=2.7e-11  Score=110.83  Aligned_cols=275  Identities=11%  Similarity=0.051  Sum_probs=176.8

Q ss_pred             eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccc--cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcc
Q 047728          108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFK--SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDAS  181 (474)
Q Consensus       108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~  181 (474)
                      .+...+.+++.+  |+++++...++.|.+||....+..+.  .+...+.+++++  +..+++...++.|..|+.+ ++. 
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-   89 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-   89 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence            344568888876  66666666678899998664443332  245678899997  4455555557889999875 221 


Q ss_pred             eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee-eee
Q 047728          182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES-VIA  260 (474)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~  260 (474)
                      .....                              ......+.++++.+++.++++...++.|.+||. +++.... ...
T Consensus        90 ~~~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~  138 (299)
T 2z2n_A           90 KEYTL------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN  138 (299)
T ss_dssp             EEEEC------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             EEEeC------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC
Confidence            11100                              013446889999999988877777889999998 5544322 222


Q ss_pred             cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728          261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE  339 (474)
Q Consensus       261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~  339 (474)
                      ....+..+++.+++ .+++...++.|..||. .+.. .    ..........+..+++++++.++++...++.|.+||. 
T Consensus       139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-  211 (299)
T 2z2n_A          139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-T----EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-  211 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-E----EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-
Confidence            34568899999998 4444555788999987 3221 1    1112233456889999999998777777889999998 


Q ss_pred             cccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728          340 LNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWIL  417 (474)
Q Consensus       340 ~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l  417 (474)
                      ++.........+...+  +++.++|++.++...++.|..||.. ++.. ...+..+...+.++++ +++.        ++
T Consensus       212 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~~~~~~~~~~~~i~~-~~g~--------l~  280 (299)
T 2z2n_A          212 SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIE-EYPIQIKSAEPHGICF-DGET--------IW  280 (299)
T ss_dssp             TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEE-EEECSSSSCCEEEEEE-CSSC--------EE
T ss_pred             CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceE-EEeCCCCCCccceEEe-cCCC--------EE
Confidence            4432211112222333  4455677766666578999999983 4422 2234455677999999 8887        55


Q ss_pred             EEecCCCcEEEEEccCC
Q 047728          418 YSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       418 ~s~s~Dg~i~vw~~~~~  434 (474)
                      ++.. .+.|..++..+.
T Consensus       281 v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          281 FAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEET-TTEEEEEEEC--
T ss_pred             EEec-CCcEEEEEcCcc
Confidence            5554 566777776554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=7.6e-13  Score=121.37  Aligned_cols=234  Identities=12%  Similarity=0.127  Sum_probs=156.1

Q ss_pred             ccccccCccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          141 FSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       141 ~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      +..+..+.....+++|+  ++ .++++..++.|..|+..++ ..                                 .+.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---------------------------------~~~   65 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---------------------------------PEM   65 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---------------------------------EEE
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---------------------------------EEE
Confidence            34444556677888997  55 6788888999999998876 21                                 111


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec----CcceeEEEecCCC-eEEE----eeC-------
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH----DDAVNSIVAGFDG-LVFT----GSA-------  281 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~~-~l~~----~~~-------  281 (474)
                      .+...+.+++++++++++++...++.|.+||..+++........    ...+..+++.++| ++++    |+.       
T Consensus        66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence            25567889999999998777766789999999887754433221    2356789999999 4444    331       


Q ss_pred             ------CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC-cccc-c-ceeeeecc
Q 047728          282 ------DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE-LNLS-H-GGVLRGHK  352 (474)
Q Consensus       282 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~-~~~~-~-~~~~~~~~  352 (474)
                            .+.|..++..  ..      ......+......++|+|+++.+++.+.++.|.+|++. .+.. . ...+..+.
T Consensus       146 ~~~~~~~~~l~~~~~~--g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  217 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPD--GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP  217 (296)
T ss_dssp             CCCCSSSCEEEEECTT--SC------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS
T ss_pred             ccccCCCcEEEEECCC--CC------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC
Confidence                  2344444433  22      12233455667899999999998777888999999986 2221 0 11221111


Q ss_pred             --eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe-eCCccccccceEEEEEecCCCcEEEE
Q 047728          353 --LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE-KDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       353 --~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                        ..-+++.++|++.++.  ++.|.+||.. ++  .+..+..+.. +++++|. |++.        .|+.++.++   +|
T Consensus       218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~--~~~~~~~~~~-~~~~~f~~~d~~--------~L~v~t~~~---l~  280 (296)
T 3e5z_A          218 GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD--ELGRVLTPQT-TSNLCFGGPEGR--------TLYMTVSTE---FW  280 (296)
T ss_dssp             SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC--EEEEEECSSC-CCEEEEESTTSC--------EEEEEETTE---EE
T ss_pred             CCCCeEEECCCCCEEEEc--CCeEEEECCC-CC--EEEEEECCCC-ceeEEEECCCCC--------EEEEEcCCe---EE
Confidence              2236777888866666  8899999987 44  3455666666 9999994 7777        677777663   55


Q ss_pred             EccC
Q 047728          430 RVSE  433 (474)
Q Consensus       430 ~~~~  433 (474)
                      .+..
T Consensus       281 ~~~~  284 (296)
T 3e5z_A          281 SIET  284 (296)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            5544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.56  E-value=5.7e-13  Score=122.21  Aligned_cols=225  Identities=14%  Similarity=0.149  Sum_probs=149.9

Q ss_pred             eccCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728          218 KHFDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      .+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.++++++++ ++++...++.|.+||...+..
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence            3566778999999998 7778888999999999876  56666677889999999999 444444568999999864432


Q ss_pred             ceeeeeeeeee-cccccEEEEEEcCCCCEEEE----Ec-------------CCCcEEEeecCcccccceeeee-cceeeE
Q 047728          296 GTKHFFSQTLL-KQECAVTALAISPDAAIVYC----GS-------------SDGLVNFWERELNLSHGGVLRG-HKLAIL  356 (474)
Q Consensus       296 ~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~----~~-------------~dg~i~v~d~~~~~~~~~~~~~-~~~~v~  356 (474)
                      .   ....... .....+..++++|+|+++++    ++             ..+.|..++.. +. ....... ....-+
T Consensus       103 ~---~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi  177 (296)
T 3e5z_A          103 E---SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGL  177 (296)
T ss_dssp             E---EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEE
T ss_pred             E---EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccE
Confidence            1   1111111 11234678999999998887    33             13456666655 22 2112111 122347


Q ss_pred             EEEecCCEEEEEeCCCcEEEEECC-CCce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          357 CLVTAGNLVFSGSADMSICIWRRK-ENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       357 ~~~~~~~~l~sgs~dg~i~iwd~~-~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +++++++.+++.+.++.|.+|++. .++. .....+..+...+.++++++++.        ++++.  ++.|.+|+.. +
T Consensus       178 ~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~--------l~v~~--~~~v~~~~~~-g  246 (296)
T 3e5z_A          178 AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL--------IWASA--GDGVHVLTPD-G  246 (296)
T ss_dssp             EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC--------EEEEE--TTEEEEECTT-S
T ss_pred             EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC--------EEEEc--CCeEEEECCC-C
Confidence            788899988777888999999996 4443 11222244556678899999998        56555  7889999975 3


Q ss_pred             CCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728          435 APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                             .....+..+.. +++++|.   ++|++.|.
T Consensus       247 -------~~~~~~~~~~~-~~~~~f~---~~d~~~L~  272 (296)
T 3e5z_A          247 -------DELGRVLTPQT-TSNLCFG---GPEGRTLY  272 (296)
T ss_dssp             -------CEEEEEECSSC-CCEEEEE---STTSCEEE
T ss_pred             -------CEEEEEECCCC-ceeEEEE---CCCCCEEE
Confidence                   23334444555 7777443   67887543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=2.6e-12  Score=119.83  Aligned_cols=200  Identities=11%  Similarity=0.106  Sum_probs=135.6

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC----CcEEEEEcccC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD----GTVKVWRRELQ  293 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d----g~i~iwd~~~~  293 (474)
                      +...+.+++|++++++++++..++.|.+||..+++.......+...+.++++++++ ++++...+    +.|.+||....
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            55677899999999988888889999999998887655444566789999999999 44444444    58999997654


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC------CCcEEEeecCcccccceeee-ecceeeEEEEecCCEEE
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS------DGLVNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVF  366 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~  366 (474)
                      ...  .. . ........+..++++|+++++++...      .+.|..||...+... .... ......++++++++.|+
T Consensus       123 ~~~--~~-~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          123 NLQ--DI-I-EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLW  197 (333)
T ss_dssp             SCE--EE-E-CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEE
T ss_pred             EEE--EE-E-ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEE
Confidence            321  00 0 11123457899999999988876654      356777776543322 1111 12233466778888665


Q ss_pred             -EEeCCCcEEEEECCC-CceE-E-----EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          367 -SGSADMSICIWRRKE-NEHI-C-----LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       367 -sgs~dg~i~iwd~~~-~~~~-~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                       +...++.|.+||... +... .     ...+.++ ..+..+++++++.        ++++...++.|.+|+..
T Consensus       198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~--------l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN--------LYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC--------EEEEEETTTEEEEECTT
T ss_pred             EEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC--------EEEEEcCCCEEEEECCC
Confidence             445678999999963 2211 1     1112222 4678899999998        77777778899999974

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=1.2e-12  Score=118.25  Aligned_cols=197  Identities=8%  Similarity=-0.010  Sum_probs=135.6

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      ..+.++++.++++++++.. ++.|.+||................+..+++.+++ .+++...++.|.+|+......    
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----  141 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----  141 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----
Confidence            4567899999988655554 8899999987654332211223568899999998 555556678899996543211    


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEE
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWR  378 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd  378 (474)
                        ..........+..++++++++++++...++.|.+||............. .....+++.++|.++++...++.|.+||
T Consensus       142 --~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          142 --TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             --EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             --EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence              1111222345788999999997777777889999998765432211111 2223356666787777777789999999


Q ss_pred             CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .......  .....+...+.++++++++.        ++++...++.|+++++...
T Consensus       220 ~~~~~~~--~~~~~~~~~p~~i~~~~~g~--------l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          220 AGSTTST--VLPFTGLNTPLAVAVDSDRT--------VYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTCSCCE--ECCCCSCSCEEEEEECTTCC--------EEEEEGGGTEEEEECCCGG
T ss_pred             CCCCcce--eeccCCCCCceeEEECCCCC--------EEEEECCCCEEEEEcCCCc
Confidence            8765422  22223345789999999998        8889999999999998765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=2.5e-11  Score=111.05  Aligned_cols=263  Identities=10%  Similarity=0.052  Sum_probs=170.1

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      +...+.+++++  +..+++...++.|.+|+.. +.... ...                              ..+...+.
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~------------------------------~~~~~~~~   60 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPL------------------------------PTPDAKVM   60 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EEC------------------------------SSTTCCEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecC------------------------------CcccCcee
Confidence            45678899987  4444444457889999987 43211 100                              01345688


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  301 (474)
                      ++++.+++.++++...++.|..||.. ++. ..+.  .....+..+++.+++ ++++...++.|.+||. .+.. .    
T Consensus        61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~----  132 (299)
T 2z2n_A           61 CLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-R----  132 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E----
T ss_pred             eEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-E----
Confidence            99999999887777668889999976 332 2232  244578899999988 4455556788999987 2221 1    


Q ss_pred             eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc--eeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728          302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                      ..........+..++++++++++++...++.|..||. ++...........  ...+++.+++.+.++...++.|.+||.
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            1112223457899999999988887777889999998 4432211111122  223555667887777667889999999


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY  459 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  459 (474)
                       +++.. ......+...+.++++.+++.        ++++...++.|.+|+. ++.      .....+..+...+.++  
T Consensus       212 -~g~~~-~~~~~~~~~~~~~i~~~~~g~--------l~v~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i--  272 (299)
T 2z2n_A          212 -SGEIT-EFKIPTPNARPHAITAGAGID--------LWFTEWGANKIGRLTS-NNI------IEEYPIQIKSAEPHGI--  272 (299)
T ss_dssp             -TCCEE-EEECSSTTCCEEEEEECSTTC--------EEEEETTTTEEEEEET-TTE------EEEEECSSSSCCEEEE--
T ss_pred             -CCcEE-EEECCCCCCCceeEEECCCCC--------EEEeccCCceEEEECC-CCc------eEEEeCCCCCCccceE--
Confidence             55532 223444556789999999988        6777667889999997 331      1111122333445566  


Q ss_pred             CCCCCcCCceeec
Q 047728          460 APSFSSQGRICQK  472 (474)
Q Consensus       460 ~p~~s~Dg~~l~~  472 (474)
                        ++ ++|++.+.
T Consensus       273 --~~-~~g~l~v~  282 (299)
T 2z2n_A          273 --CF-DGETIWFA  282 (299)
T ss_dssp             --EE-CSSCEEEE
T ss_pred             --Ee-cCCCEEEE
Confidence              45 78888765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=3.1e-12  Score=132.15  Aligned_cols=242  Identities=10%  Similarity=0.017  Sum_probs=157.3

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCC-----eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDG-----KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      +|...+..++|+  +++|+.+..++     .|++||+.+++......                                 
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---------------------------------  168 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------------------  168 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------
Confidence            344568888998  56777665443     89999999886532110                                 


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCc----------------EEEEEcCCccee--eeee--ecCcceeEEEecCCC-eEE
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKT----------------FKVWRTSDYKCL--ESVI--AHDDAVNSIVAGFDG-LVF  277 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~----------------i~iwd~~~~~~~--~~~~--~~~~~v~~v~~~~~~-~l~  277 (474)
                      ....+..++|+||++.|+.++.++.                |++|++.+++..  ..+.  .+...+..+.|+||+ .|+
T Consensus       169 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~  248 (710)
T 2xdw_A          169 ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (710)
T ss_dssp             EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEE
Confidence            1112668999999999999988766                999999887632  2222  244557889999999 555


Q ss_pred             EeeC-----CCcEEEEEccc------CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCccc
Q 047728          278 TGSA-----DGTVKVWRREL------QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELNL  342 (474)
Q Consensus       278 ~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~~  342 (474)
                      ..+.     +..|.+||+..      +..     ....+..+...+.. .|++++..|+..+..    +.|.+||+.+..
T Consensus       249 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          249 LSIREGCDPVNRLWYCDLQQESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             EEEECSSSSCCEEEEEEGGGSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EEEEccCCCccEEEEEECcccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            5543     56899999875      221     11223334444443 488888877766553    359999987753


Q ss_pred             c-cceeeeecce--eeE--EEEecCCEEEEEeCCCc--EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          343 S-HGGVLRGHKL--AIL--CLVTAGNLVFSGSADMS--ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       343 ~-~~~~~~~~~~--~v~--~~~~~~~~l~sgs~dg~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      . ....+..+..  .+.  ++.+++.++++...|+.  |.+||+.+++  .+..+..+.+.|..+.++|++..       
T Consensus       323 ~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~-------  393 (710)
T 2xdw_A          323 ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTE-------  393 (710)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSE-------
T ss_pred             cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCE-------
Confidence            2 1123333322  343  34445667788888885  5566775665  34556667778899999998762       


Q ss_pred             EEEEec---CCCcEEEEEccCCC
Q 047728          416 ILYSGS---LDKSVKMWRVSEQA  435 (474)
Q Consensus       416 ~l~s~s---~Dg~i~vw~~~~~~  435 (474)
                      ++++.+   ..++|.+||+.+++
T Consensus       394 l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          394 IFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEeCCCCCCEEEEEECCCCc
Confidence            333333   45789999998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=1e-12  Score=135.36  Aligned_cols=272  Identities=11%  Similarity=0.042  Sum_probs=167.2

Q ss_pred             EEEEEEcCCEEEEeeCCC---cEEEEe--C-Ccccccc-------ccCccCEEEEEec--CCEEE-----EEeCCCeEEE
Q 047728          113 IYSLAAAGDLLYTGSDSK---NIRVWK--N-QREFSGF-------KSNSGLVKAIVIS--NEKIF-----SGHQDGKIRV  172 (474)
Q Consensus       113 i~~~~~~~~~l~tgs~dg---~v~vwd--~-~~~~~~~-------~~h~~~V~~i~~~--~~~l~-----s~~~dg~i~v  172 (474)
                      +....++|++++....++   .-.+|.  . ......+       .+|...+..++|+  +++|+     .|+.+.+|++
T Consensus        72 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v  151 (695)
T 2bkl_A           72 VSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV  151 (695)
T ss_dssp             ECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred             CCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence            444557888777665443   344553  2 1111111       2455678899998  56777     3444568999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC--eeEEEecCCCCEEEEEECCCc-------
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA--ISSLSMSEDQNLLYSASWDKT-------  243 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg~-------  243 (474)
                      ||+.+++.....                                  +...  ...++|+||++.|+.++.|..       
T Consensus       152 ~dl~tg~~~~~~----------------------------------~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          152 IDVDSGEWSKVD----------------------------------VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EETTTCCBCSSC----------------------------------CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             EECCCCCCcCCc----------------------------------ccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            999988653100                                  1111  257899999999999998876       


Q ss_pred             ------EEEEEcCCcc----eeeeeeecCcceeEEEecCCC-eEEEeeCCC----cEEEEEcccCCCceeeeeeeeeecc
Q 047728          244 ------FKVWRTSDYK----CLESVIAHDDAVNSIVAGFDG-LVFTGSADG----TVKVWRRELQGKGTKHFFSQTLLKQ  308 (474)
Q Consensus       244 ------i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~  308 (474)
                            |++|++.++.    ++.....+...+..+.|+||| .|+..+.++    .|.+|+.....       ...+..+
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-------~~~l~~~  270 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-------FRLLVKG  270 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-------CEEEEEC
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-------eEEeecC
Confidence                  9999998876    233333455678899999999 666665554    55565443221       1223334


Q ss_pred             cccEEEEEEcCCCCEEEEEc---CCCcEEEeecCcccc--cceeeeec-ceeeEEEEe-cCCEEEEEeCCCcEEEEECC-
Q 047728          309 ECAVTALAISPDAAIVYCGS---SDGLVNFWERELNLS--HGGVLRGH-KLAILCLVT-AGNLVFSGSADMSICIWRRK-  380 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~-~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~-  380 (474)
                      ...+....+ +++.+++...   .++.|.+||+.++..  ...+...+ ...+..+.+ ++.++++...|+..+||.+. 
T Consensus       271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence            444555556 5555444443   257899999977542  12233332 333444444 56678888899988888665 


Q ss_pred             CCceEEEEeecCC-ccceEEEEEeeCCccccccceEEEEE---ecCCCcEEEEEccCCC
Q 047728          381 ENEHICLSMLTGH-SGPVKCLAVEKDDESLSREKRWILYS---GSLDKSVKMWRVSEQA  435 (474)
Q Consensus       381 ~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~l~s---~s~Dg~i~vw~~~~~~  435 (474)
                      .++  ....+..+ .+.|..++++|++..       ++++   ....++|++||+.+++
T Consensus       350 ~g~--~~~~l~~~~~~~v~~~~~s~d~~~-------l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          350 KGK--PVRTVQLPGVGAASNLMGLEDLDD-------AYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TCC--EEEECCCSSSSEECCCBSCTTCSE-------EEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCC--eeEEecCCCCeEEEEeecCCCCCE-------EEEEEcCCCCCCEEEEEECCCCc
Confidence            233  23445444 567888888988762       3333   3345789999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=1.6e-12  Score=133.96  Aligned_cols=230  Identities=7%  Similarity=-0.068  Sum_probs=144.9

Q ss_pred             ccCCeeEEEecCCCCEEEE-----EECCCcEEEEEcCCccee-eeeeecCcceeEEEecCCC-eEEEeeCCCc-------
Q 047728          219 HFDAISSLSMSEDQNLLYS-----ASWDKTFKVWRTSDYKCL-ESVIAHDDAVNSIVAGFDG-LVFTGSADGT-------  284 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~-------  284 (474)
                      |...+..++|+|||++|+.     |+.+..|++||+.+++.+ ... ........++|+||+ .|+.++.|..       
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            5567899999999999983     444578999999998865 211 111112678999999 7888877765       


Q ss_pred             ------EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC----cEEEeecCcccccceeeeeccee
Q 047728          285 ------VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG----LVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       285 ------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                            |++|++.......  .+......+...+..+.|+|+|++|+..+.++    .|.+|+..++. ...+.......
T Consensus       198 ~~~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~  274 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK  274 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGC--EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred             CCCCCEEEEEECCCCchhc--eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence                  9999987543211  12222334456788999999999988877665    67777654442 22222222222


Q ss_pred             eEEEEecCCEEEEEe---CCCcEEEEECCCCceE-EEEeecCC-ccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          355 ILCLVTAGNLVFSGS---ADMSICIWRRKENEHI-CLSMLTGH-SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       355 v~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~~-~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      ...+.+++++++...   .++.|.+||+.+++.. ....+..+ ...+..++|+ ++.        ++++...|+..+||
T Consensus       275 ~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~--------lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          275 YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH--------LSLEYLKDATSEVR  345 (695)
T ss_dssp             EEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE--------EEEEEEETTEEEEE
T ss_pred             EEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE--------EEEEEEECCEEEEE
Confidence            233346777444433   2588999999776420 01122223 4568888888 555        89999999999999


Q ss_pred             EccCCCCCCCCCcccccccCC-CCCCCccccCCCCCcCCceee
Q 047728          430 RVSEQAPPLVSTTQQHPLEGH-GVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      .+....      .....+..+ ...+..+    ++++||+.++
T Consensus       346 ~~~~~g------~~~~~l~~~~~~~v~~~----~~s~d~~~l~  378 (695)
T 2bkl_A          346 VATLKG------KPVRTVQLPGVGAASNL----MGLEDLDDAY  378 (695)
T ss_dssp             EEETTC------CEEEECCCSSSSEECCC----BSCTTCSEEE
T ss_pred             EEeCCC------CeeEEecCCCCeEEEEe----ecCCCCCEEE
Confidence            876321      122223332 3344444    6677886654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.50  E-value=3.2e-12  Score=115.35  Aligned_cols=225  Identities=9%  Similarity=0.020  Sum_probs=147.5

Q ss_pred             CeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728          222 AISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      ...++++++++++++ +...++.|.+||..+.........+...+.++++.+++.++++..++.|.+||......     
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-----   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-----   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-----
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-----
Confidence            678999999998666 44678999999976654332222333567899999988555554488999999764321     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                       ..........+..++++++++++++...++.|.+|+..+.......... .....+++.++++++++...++.|.+||.
T Consensus       100 -~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          100 -TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             -EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             -eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence             1111122356899999999998887777889999986554322111111 12344677778887777777899999998


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY  459 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  459 (474)
                      ......  .....+...+.++++.+++.        ++++...++.|.+|+........       ....+-..+.++  
T Consensus       179 ~~~~~~--~~~~~~~~~p~~i~~d~~g~--------l~v~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~p~~i--  239 (270)
T 1rwi_B          179 ESNNQV--VLPFTDITAPWGIAVDEAGT--------VYVTEHNTNQVVKLLAGSTTSTV-------LPFTGLNTPLAV--  239 (270)
T ss_dssp             TTCCEE--ECCCSSCCSEEEEEECTTCC--------EEEEETTTSCEEEECTTCSCCEE-------CCCCSCSCEEEE--
T ss_pred             CCCceE--eecccCCCCceEEEECCCCC--------EEEEECCCCcEEEEcCCCCccee-------eccCCCCCceeE--
Confidence            876532  22233336789999999987        78888788999999986542111       111122334555  


Q ss_pred             CCCCCcCCceeecc
Q 047728          460 APSFSSQGRICQKR  473 (474)
Q Consensus       460 ~p~~s~Dg~~l~~~  473 (474)
                        ++++||++.++.
T Consensus       240 --~~~~~g~l~v~~  251 (270)
T 1rwi_B          240 --AVDSDRTVYVAD  251 (270)
T ss_dssp             --EECTTCCEEEEE
T ss_pred             --EECCCCCEEEEE
Confidence              677889887753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=1.1e-10  Score=115.96  Aligned_cols=235  Identities=11%  Similarity=0.026  Sum_probs=154.1

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      +..+++...++.|.++|..+++......                                 ....+..+.|+||++++++
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~---------------------------------~g~~p~~v~~SpDGr~lyv  213 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLD---------------------------------TGYAVHISRLSASGRYLFV  213 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEE---------------------------------CSSCEEEEEECTTSCEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEe---------------------------------CCCCccceEECCCCCEEEE
Confidence            3466777789999999999887654332                                 2234568999999999999


Q ss_pred             EECCCcEEEEEcC--CcceeeeeeecCcceeEEEec----CCC-eEEE-eeCCCcEEEEEcccCCCceeeeeeeee--e-
Q 047728          238 ASWDKTFKVWRTS--DYKCLESVIAHDDAVNSIVAG----FDG-LVFT-GSADGTVKVWRRELQGKGTKHFFSQTL--L-  306 (474)
Q Consensus       238 ~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~v~~~----~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~--~-  306 (474)
                      ++.|+.|.+||+.  +++.+..+.... ....++++    |+| ++++ ...++.|.++|..+.+..... .....  . 
T Consensus       214 ~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i-~~~~~~~~~  291 (567)
T 1qks_A          214 IGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ-STRGMTYDE  291 (567)
T ss_dssp             EETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE-ECCEECTTT
T ss_pred             EcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE-ecccccccc
Confidence            9999999999996  788888776533 45789999    688 5544 455699999997654431111 10000  0 


Q ss_pred             --cc-cccEEEEEEcCCCCE-EEEEcCCCcEEEeecCcccccc--eeeeecceeeEEEEecCCEEEEEe-CCCcEEEEEC
Q 047728          307 --KQ-ECAVTALAISPDAAI-VYCGSSDGLVNFWERELNLSHG--GVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRR  379 (474)
Q Consensus       307 --~~-~~~v~~l~~~~~~~~-l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~  379 (474)
                        .| ...+..+..++++.. ++....+|.|.++|........  .+..+....-..+++++++++++. .++.|.++|+
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence              01 226788888987664 4445667999999987543221  111111222356888999887766 5789999999


Q ss_pred             CCCceEEEEee-c--CCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728          380 KENEHICLSML-T--GHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQA  435 (474)
Q Consensus       380 ~~~~~~~~~~~-~--~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~  435 (474)
                      .+++....... .  .|.+.-..+ ++|++..       +++++. .++.|.+++.....
T Consensus       372 ~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~-------v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          372 KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP-------VWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             TTTEEEEEEECSSSSBCCTTCEEE-EETTTEE-------EEEEEBSSSSEEEEEECCTTT
T ss_pred             CCCcEEEEEeccCcCCCCccceee-ECCCCCc-------EEEeCCCCCCeEEEecCCCCC
Confidence            98874433222 1  233222222 5776442       555553 56899999998743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.46  E-value=5e-10  Score=102.32  Aligned_cols=270  Identities=10%  Similarity=0.082  Sum_probs=172.5

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcccccc--ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGF--KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH  183 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~--~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~  183 (474)
                      ...+.+++.+  |++.++...++.|.+|+....+..+  ..+...+.+++++  +..+++...++.|..||.. ++.. .
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-E   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-E
Confidence            4467777776  7777776678899999866333322  2234678889887  4445554557889999877 4321 1


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee-eeecC
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES-VIAHD  262 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~  262 (474)
                      ...                              ......+.++++.+++.++++...++.|..+|.. ++.... +....
T Consensus        97 ~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~  145 (300)
T 2qc5_A           97 YPL------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKG  145 (300)
T ss_dssp             EEC------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTT
T ss_pred             ecC------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCC
Confidence            110                              0123467899999999887777668899999987 554422 22234


Q ss_pred             cceeEEEecCCCe-EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728          263 DAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       263 ~~v~~v~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                      ..+..+++.+++. +++...++.|..||.. ... .    ..........+..++++++++++++....+.|.+||.. +
T Consensus       146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g  218 (300)
T 2qc5_A          146 SYPAFITLGSDNALWFTENQNNSIGRITNT-GKL-E----EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-G  218 (300)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE-E----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C
T ss_pred             CCceeEEECCCCCEEEEecCCCeEEEECCC-CcE-E----EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-C
Confidence            5788999999884 4444457889999872 221 1    11122334568999999999888777777889999983 3


Q ss_pred             cccceeeeeccee--eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728          342 LSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS  419 (474)
Q Consensus       342 ~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s  419 (474)
                      .............  .+++.+++++.++...++.|..||.. ++.. ...+......+.++++.+++.        ++++
T Consensus       219 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~g~--------l~v~  288 (300)
T 2qc5_A          219 EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ-EYQLQTENAEPHGITFGKDGS--------VWFA  288 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECCSTTCCCCCEEECTTSC--------EEEE
T ss_pred             cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE-EEECCccCCccceeEeCCCCC--------EEEE
Confidence            2221111122222  34555677866666667999999984 4422 233343456689999999987        5555


Q ss_pred             ecCCCcEEEEEc
Q 047728          420 GSLDKSVKMWRV  431 (474)
Q Consensus       420 ~s~Dg~i~vw~~  431 (474)
                      .. . .|..++.
T Consensus       289 ~~-~-~i~~~~p  298 (300)
T 2qc5_A          289 LK-C-KIGKLNL  298 (300)
T ss_dssp             CS-S-EEEEEEE
T ss_pred             cc-C-ceEEeCC
Confidence            54 4 5666654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=1.1e-10  Score=109.06  Aligned_cols=277  Identities=11%  Similarity=0.054  Sum_probs=174.1

Q ss_pred             EEcCCEEEEeeC-----CCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCC
Q 047728          117 AAAGDLLYTGSD-----SKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSS  177 (474)
Q Consensus       117 ~~~~~~l~tgs~-----dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~  177 (474)
                      .|+++.+++...     ++.|.+.|..  +.+..+.....+ . ++++  +++++++.          .++.|.+||..+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            356776666654     5789999854  444555444444 3 7776  66776665          367899999998


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCccee
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCL  255 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~  255 (474)
                      .+......+..-..                         .........++|+|||++++++..  ++.|.++|+.+++.+
T Consensus       119 ~~v~~~I~v~~g~r-------------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D          119 LLPTADIELPDAPR-------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             CCEEEEEEETTCCC-------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CeEEEEEECCCccc-------------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence            87654433211000                         001123457899999999998874  689999999999999


Q ss_pred             eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE-EEEEc-CCCCEEEEEcCCC
Q 047728          256 ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAIS-PDAAIVYCGSSDG  331 (474)
Q Consensus       256 ~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~-~~~~~l~~~~~dg  331 (474)
                      .++.....    ..+.|.+  .+++.+.||.+.+.++....+... .....+.....++. ...|. ++|++++ .+.+|
T Consensus       174 ~tI~v~g~----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g  247 (386)
T 3sjl_D          174 RMLDVPDC----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTG  247 (386)
T ss_dssp             EEEECCSE----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred             EEEECCCc----ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCC
Confidence            88854221    1222433  677888899999999875333211 00111111112221 23554 5776555 55689


Q ss_pred             cEEEeecCcccc--ccee-----------eeecceeeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEE
Q 047728          332 LVNFWERELNLS--HGGV-----------LRGHKLAILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLS  388 (474)
Q Consensus       332 ~i~v~d~~~~~~--~~~~-----------~~~~~~~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~  388 (474)
                      .|++.|+.....  ...+           ........++++++++.++....          .+.|.++|+.+.+.+  .
T Consensus       248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~--~  325 (386)
T 3sjl_D          248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--A  325 (386)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--E
T ss_pred             EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE--E
Confidence            999999865531  1111           11223345778888888887653          257999999998844  3


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      .+.. ...+..|++++|++..      ++++...++.|.++|..+++
T Consensus       326 ~i~v-g~~~~~lavs~D~~~~------ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          326 KFEM-GHEIDSINVSQDEKPL------LYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEE-EEEECEEEECSSSSCE------EEEEETTTTEEEEEETTTCC
T ss_pred             EEEC-CCCcceEEECCCCCeE------EEEEcCCCCeEEEEECCCCc
Confidence            3332 2368899999998531      34445679999999998874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.45  E-value=8.6e-11  Score=109.29  Aligned_cols=231  Identities=10%  Similarity=0.023  Sum_probs=151.7

Q ss_pred             EEEEEEcCCE-EEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEe-CCCeEEEEecCCCCcceeeeec
Q 047728          113 IYSLAAAGDL-LYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGH-QDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       113 i~~~~~~~~~-l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      ...+.++++. +++...++.|.+||..  +.+..+. .......++++ ++.++.+. .++.|.+||..+++........
T Consensus        46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g  124 (328)
T 3dsm_A           46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP  124 (328)
T ss_dssp             EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence            5666777554 4455557899999954  4444453 34667888884 55777666 8999999999887654332221


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeeeeecCcce
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESVIAHDDAV  265 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v  265 (474)
                      ..                           .+.......+++  ++..|+++.  .++.|.++|..+++.+..+.. ....
T Consensus       125 ~~---------------------------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p  174 (328)
T 3dsm_A          125 DM---------------------------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQP  174 (328)
T ss_dssp             TC---------------------------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCB
T ss_pred             Cc---------------------------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCc
Confidence            10                           001123446666  355666655  488999999999998887765 3445


Q ss_pred             eEEEecCCCeEEEe-eCC----------CcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          266 NSIVAGFDGLVFTG-SAD----------GTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       266 ~~v~~~~~~~l~~~-~~d----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      ..+++.+++.++.+ ..+          +.|.++|......      ..... ........++++|+++.|+++..  .|
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v------~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v  246 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV------EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DI  246 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE------EEEEECCTTCCCEEEEECTTSCEEEEESS--SE
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE------EEEEecCCCCCceeEEEecCCCEEEEEcc--EE
Confidence            78899999944444 333          7899999864431      11221 11346889999999999988765  89


Q ss_pred             EEeecCcccccce-eee--ecceeeEEEEe-cCCEEEEE----eCCCcEEEEECCCCc
Q 047728          334 NFWERELNLSHGG-VLR--GHKLAILCLVT-AGNLVFSG----SADMSICIWRRKENE  383 (474)
Q Consensus       334 ~v~d~~~~~~~~~-~~~--~~~~~v~~~~~-~~~~l~sg----s~dg~i~iwd~~~~~  383 (474)
                      .+||..++..... ...  +....-+++++ ++.++++.    ..++.|.+||.. ++
T Consensus       247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            9999987654321 122  12334467777 45566665    578999999998 65

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=5.2e-10  Score=102.21  Aligned_cols=266  Identities=13%  Similarity=0.095  Sum_probs=168.9

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      ....+.+++++  +...++...++.|.+|+.. ++... ...                              ......+.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~------------------------------~~~~~~~~   65 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEV------------------------------PTPDAKVM   65 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EEC------------------------------SSTTCCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EEC------------------------------CCCCCcce
Confidence            34567888887  4455555567899999977 43221 110                              01335688


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceee-eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE-SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS  302 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  302 (474)
                      ++++.+++.++++...++.|..||.. ++... .+......+.++++.+++ ++++...++.|..||.. ... .    .
T Consensus        66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~----~  138 (300)
T 2qc5_A           66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y----E  138 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E----E
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E----E
Confidence            99999999877776667889999987 55432 122234678899999888 44555557889999875 221 1    1


Q ss_pred             eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      .........+..++++++++++++...++.|..||.. +.............  .+++.+++++.++....+.|.+||. 
T Consensus       139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  216 (300)
T 2qc5_A          139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-  216 (300)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-
Confidence            1122244578999999999977777667889999983 32221111112222  3455566777776666788999998 


Q ss_pred             CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728          381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA  460 (474)
Q Consensus       381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  460 (474)
                      +++.. ...+..+...+.++++.+++.        ++++...++.|..|+.. +..      ....+......+.++   
T Consensus       217 ~g~~~-~~~~~~~~~~~~~i~~d~~g~--------l~v~~~~~~~i~~~~~~-g~~------~~~~~~~~~~~~~~i---  277 (300)
T 2qc5_A          217 TGEIS-EYDIPTPNARPHAITAGKNSE--------IWFTEWGANQIGRITND-NTI------QEYQLQTENAEPHGI---  277 (300)
T ss_dssp             TCCEE-EEECSSTTCCEEEEEECSTTC--------EEEEETTTTEEEEECTT-SCE------EEEECCSTTCCCCCE---
T ss_pred             CCcEE-EEECCCCCCCceEEEECCCCC--------EEEeccCCCeEEEECCC-CcE------EEEECCccCCcccee---
Confidence            44432 223344556789999999988        67777677899999873 311      111122223345555   


Q ss_pred             CCCCcCCceeecc
Q 047728          461 PSFSSQGRICQKR  473 (474)
Q Consensus       461 p~~s~Dg~~l~~~  473 (474)
                       ++++||++.+..
T Consensus       278 -~~~~~g~l~v~~  289 (300)
T 2qc5_A          278 -TFGKDGSVWFAL  289 (300)
T ss_dssp             -EECTTSCEEEEC
T ss_pred             -EeCCCCCEEEEc
Confidence             667889887754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=6.7e-12  Score=113.51  Aligned_cols=185  Identities=12%  Similarity=0.027  Sum_probs=136.1

Q ss_pred             CCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-c
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-Q  308 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~  308 (474)
                      .+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|+|.++. +.++.|..||. .++.      ...+.. .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~------~W~~~~~~   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRE------LWNIAAPA   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCE------EEEEECCT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCE------EEEEcCCC
Confidence            35789999999999999999999999998766 4789999999994444 45788999997 3332      222222 2


Q ss_pred             cccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeee-----e-c-ceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          309 ECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLR-----G-H-KLAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~-----~-~-~~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      ...+.++.+.++++++++.+. ++.|..+|.+ ++.+.....     . | .....++.++|+++++...++.|..||..
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            346888999999999999877 7788888864 332222211     1 1 11224567789999999999999999998


Q ss_pred             CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                       ++.  +..+... ..+.++.+.+++.        +++++..+++|..+|..+++.
T Consensus       155 -G~~--~w~~~~~-~~~~~~~~~~~g~--------~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          155 -GQL--LNSVKLS-GTPFSSAFLDNGD--------CLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             -SCE--EEEEECS-SCCCEEEECTTSC--------EEEECBTTSEEEEECTTTCCE
T ss_pred             -CCE--EEEEECC-CCccceeEcCCCC--------EEEEeCCCCeEEEEeCcCCcE
Confidence             663  4455443 3566788888888        888888888899999887754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.44  E-value=1.8e-11  Score=112.92  Aligned_cols=230  Identities=8%  Similarity=0.036  Sum_probs=147.8

Q ss_pred             ccCCeeEEEecCCCCEEEE-------EECCCcEEEEEcCCcceeeeee----ecCcceeEEEecCC-CeEEEeeCCCcEE
Q 047728          219 HFDAISSLSMSEDQNLLYS-------ASWDKTFKVWRTSDYKCLESVI----AHDDAVNSIVAGFD-GLVFTGSADGTVK  286 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~~~~~-~~l~~~~~dg~i~  286 (474)
                      ......+++|.+++.++++       ...++.|.+||..+++......    ++...+.++++.++ +.++.++..+.|.
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~   95 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence            4456789999999987777       5778999999988776543221    14467889999999 7666666666888


Q ss_pred             EEEcccCCCceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcCC---------------CcEEEeecCcccccceeee-
Q 047728          287 VWRRELQGKGTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSSD---------------GLVNFWERELNLSHGGVLR-  349 (474)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d---------------g~i~v~d~~~~~~~~~~~~-  349 (474)
                      +||.. +.. . ....... ......+..++++++++++++...+               +.|..||.. +... .... 
T Consensus        96 ~~d~~-g~~-~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~  170 (314)
T 1pjx_A           96 VVQTD-GTF-E-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTA  170 (314)
T ss_dssp             EEETT-SCE-E-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEE
T ss_pred             EEeCC-CCE-E-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccC
Confidence            99876 321 1 0000000 1122458899999999988776654               567777765 3221 1211 


Q ss_pred             ecceeeEEEE----ecCCEEEEE-eCCCcEEEEECC-CCceE---EEEeecCCc-cceEEEEEeeCCccccccceEEEEE
Q 047728          350 GHKLAILCLV----TAGNLVFSG-SADMSICIWRRK-ENEHI---CLSMLTGHS-GPVKCLAVEKDDESLSREKRWILYS  419 (474)
Q Consensus       350 ~~~~~v~~~~----~~~~~l~sg-s~dg~i~iwd~~-~~~~~---~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~l~s  419 (474)
                      .....-++++    ++++.|+.+ ..++.|.+||.. .++..   ....+..+. ..+..+++++++.        ++++
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--------l~v~  242 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN--------LLVA  242 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC--------EEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC--------EEEE
Confidence            1223346777    778665555 567899999986 34321   123344444 5688999999998        7777


Q ss_pred             ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc-eeec
Q 047728          420 GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR-ICQK  472 (474)
Q Consensus       420 ~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~-~l~~  472 (474)
                      ...++.|.+|+..++..       ...+..+...+.++    +|++||+ +.++
T Consensus       243 ~~~~~~i~~~d~~~g~~-------~~~~~~~~~~~~~i----~~~~dg~~l~v~  285 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQP-------KMRIRCPFEKPSNL----HFKPQTKTIFVT  285 (314)
T ss_dssp             EETTTEEEEECTTCBSC-------SEEEECSSSCEEEE----EECTTSSEEEEE
T ss_pred             EcCCCEEEEEcCCCCcE-------eEEEeCCCCCceeE----EECCCCCEEEEE
Confidence            77788999999875532       12223333445666    6688898 5543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=5e-11  Score=123.67  Aligned_cols=230  Identities=13%  Similarity=0.014  Sum_probs=144.5

Q ss_pred             ccCCeeEEEecCCCCEEEEEECC-----CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCc---------
Q 047728          219 HFDAISSLSMSEDQNLLYSASWD-----KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGT---------  284 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~---------  284 (474)
                      |...+..++|+|||++|+.+..+     ..|++||+.+++.+... .+...+..++|+||..|+.+..++.         
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence            44467899999999999877654     46999999999876532 2222346789999875666655543         


Q ss_pred             -----EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccc--cceeeeecc
Q 047728          285 -----VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLS--HGGVLRGHK  352 (474)
Q Consensus       285 -----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~--~~~~~~~~~  352 (474)
                           |++|++.......  ........+...+..+.|+|||++|+..+.++     .|++||+.++..  ...+.....
T Consensus       240 ~~~~~v~~~~lgt~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSAD--QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             CCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             CCCCEEEEEECCCCchhC--EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                 8888875433211  11122222334588999999999888777543     799999876521  222322222


Q ss_pred             eeeEEEEecCCEEEEEeCC----CcEEEEECCCCc-eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEE
Q 047728          353 LAILCLVTAGNLVFSGSAD----MSICIWRRKENE-HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVK  427 (474)
Q Consensus       353 ~~v~~~~~~~~~l~sgs~d----g~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~  427 (474)
                      .....+.++++.|+..+.+    +.|.+||+.+.. . ....+..+...+..++|. ++.        ++++...|+..+
T Consensus       318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~l~~~~~~~l~~~~~~-~~~--------lv~~~~~dg~~~  387 (741)
T 1yr2_A          318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR-FDTVVPESKDNLESVGIA-GNR--------LFASYIHDAKSQ  387 (741)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCE-EEEEECCCSSEEEEEEEE-BTE--------EEEEEEETTEEE
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccc-cEEEecCCCCeEEEEEEE-CCE--------EEEEEEECCEEE
Confidence            3334456889988887754    459999998742 1 123344555567778887 444        788999999988


Q ss_pred             EEEccCCCCCCCCCcccccccC-CCCCCCccccCCCCCcCCceee
Q 047728          428 MWRVSEQAPPLVSTTQQHPLEG-HGVAPNSLPYAPSFSSQGRICQ  471 (474)
Q Consensus       428 vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~p~~s~Dg~~l~  471 (474)
                      ||.+....      .....+.. ....+..+    ++++|++.++
T Consensus       388 l~~~~~~g------~~~~~l~~~~~~~v~~~----~~s~d~~~l~  422 (741)
T 1yr2_A          388 VLAFDLDG------KPAGAVSLPGIGSASGL----SGRPGDRHAY  422 (741)
T ss_dssp             EEEEETTS------CEEEECBCSSSCEEEEE----ECCBTCSCEE
T ss_pred             EEEEeCCC------CceeeccCCCCeEEEEe----ecCCCCCEEE
Confidence            88776311      12222322 23334444    5677877554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=4.6e-11  Score=123.97  Aligned_cols=276  Identities=13%  Similarity=0.037  Sum_probs=166.4

Q ss_pred             cEEEEEEcCCEEEEeeCCCc---EEEEe--C----Ccccccc-------ccCccCEEEEEec--CCEEEEEeCC-----C
Q 047728          112 HIYSLAAAGDLLYTGSDSKN---IRVWK--N----QREFSGF-------KSNSGLVKAIVIS--NEKIFSGHQD-----G  168 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~---v~vwd--~----~~~~~~~-------~~h~~~V~~i~~~--~~~l~s~~~d-----g  168 (474)
                      .+....++|++++....++.   -.+|.  .    ......+       .+|...+..+.|+  +++|+.+..+     .
T Consensus       110 ~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~  189 (741)
T 1yr2_A          110 RFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWR  189 (741)
T ss_dssp             EECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred             ccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence            34455588887776554432   55563  2    2222221       2333467888898  5677766543     3


Q ss_pred             eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc-----
Q 047728          169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT-----  243 (474)
Q Consensus       169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-----  243 (474)
                      .|++||+.+++..... .                                +...+..++|+|| +.|+.++.++.     
T Consensus       190 ~i~v~dl~tg~~~~~~-~--------------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          190 TVKFVGVADGKPLADE-L--------------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             EEEEEETTTCCEEEEE-E--------------------------------EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             EEEEEECCCCCCCCcc-C--------------------------------CCceeccEEEECC-CEEEEEEecCcccccc
Confidence            6999999988753210 0                                1112357899999 99988887654     


Q ss_pred             ---------EEEEEcCCcce--eeeeee--cCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccCCCceeeeeeee
Q 047728          244 ---------FKVWRTSDYKC--LESVIA--HDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQGKGTKHFFSQT  304 (474)
Q Consensus       244 ---------i~iwd~~~~~~--~~~~~~--~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~  304 (474)
                               |++|++.++..  ...+..  +...+..+.|+||| .|+..+.+     ..|.+||+..+...    ....
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~  311 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG----PVTA  311 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC----CCEE
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc----ccEE
Confidence                     89999987653  222222  23357899999999 66655544     37999998754110    0122


Q ss_pred             eecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCccc-ccceeeeecceeeEEEEe-cCCEEEEEeCCCcEEEEE
Q 047728          305 LLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELNL-SHGGVLRGHKLAILCLVT-AGNLVFSGSADMSICIWR  378 (474)
Q Consensus       305 ~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~iwd  378 (474)
                      +..+...+... ++|+++.|+..+.+    +.|.+||+.+.. ....+...+...+..+++ ++.++++...|+..+||.
T Consensus       312 l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          312 LIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred             ecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence            22333334444 34888888877653    459999987642 233344444444445555 455777888898887776


Q ss_pred             CC-CCceEEEEeecC-CccceEEEEEeeCCccccccceEEEEE---ecCCCcEEEEEccCCC
Q 047728          379 RK-ENEHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYS---GSLDKSVKMWRVSEQA  435 (474)
Q Consensus       379 ~~-~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s---~s~Dg~i~vw~~~~~~  435 (474)
                      +. .+.  ....+.. +.+.|..+.++|++..       ++++   ....++|++||+.+++
T Consensus       391 ~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~-------l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          391 FDLDGK--PAGAVSLPGIGSASGLSGRPGDRH-------AYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EETTSC--EEEECBCSSSCEEEEEECCBTCSC-------EEEEEEETTEEEEEEEEETTTTE
T ss_pred             EeCCCC--ceeeccCCCCeEEEEeecCCCCCE-------EEEEEcCCCCCCEEEEEECCCCc
Confidence            54 233  2344443 3567889999998763       3333   3345789999997754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.42  E-value=6e-10  Score=105.21  Aligned_cols=274  Identities=8%  Similarity=-0.005  Sum_probs=166.9

Q ss_pred             EcCCEEEEeeC--CC---cEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCC
Q 047728          118 AAGDLLYTGSD--SK---NIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSK  178 (474)
Q Consensus       118 ~~~~~l~tgs~--dg---~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~  178 (474)
                      ++++++++...  ..   .|.+||..  +.+..+.....+  .++++  +++++.+.          .++.|.+||..+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            44555555442  22   78888844  334344433333  67776  66777775          3678999999876


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLE  256 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~  256 (474)
                      +............                        +. +......++|+||+++|+++..  ++.|.++| .+++.+.
T Consensus       108 ~~~~~i~~~~~~~------------------------~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H          108 LPIADIELPDAPR------------------------FD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             cEEEEEECCCccc------------------------cc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence            5543322210000                        00 1123458899999999999874  57899999 9998887


Q ss_pred             e-eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc-EEEEEEcCCCCEEEEEcCCCc
Q 047728          257 S-VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA-VTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       257 ~-~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      . +... .   ++.+.+++  .+++.+.||.+.++|. .............. ....+ .....+.+++..++..+..+.
T Consensus       162 ~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~  235 (373)
T 2mad_H          162 QLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGK  235 (373)
T ss_pred             EEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCce
Confidence            7 5432 2   24444555  6677788999999998 44321110000001 11122 223456666655555557888


Q ss_pred             EEEeecCccccc-ceee------------eecceeeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEEe
Q 047728          333 VNFWERELNLSH-GGVL------------RGHKLAILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLSM  389 (474)
Q Consensus       333 i~v~d~~~~~~~-~~~~------------~~~~~~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~  389 (474)
                      +.+.|+...... ...+            .......+.++++++.+++...          .+.|.++|..+.+.  +..
T Consensus       236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~  313 (373)
T 2mad_H          236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQ  313 (373)
T ss_pred             EEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEE
Confidence            999998654211 1111            1122233677888888887653          35799999998874  344


Q ss_pred             ecCCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728          390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQA  435 (474)
Q Consensus       390 ~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~  435 (474)
                      +.. .....+++|+||++.       +++++. .++.|.+||+.+.+
T Consensus       314 i~~-g~~p~~i~~s~Dg~~-------~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          314 ISL-GHDVDAISVAQDGGP-------DLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEC-CCCcCeEEECCCCCe-------EEEEEcCCCCeEEEEECCCCC
Confidence            432 235899999999873       455555 58999999998874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=3e-10  Score=104.75  Aligned_cols=239  Identities=9%  Similarity=0.042  Sum_probs=150.0

Q ss_pred             cEEEEEEc--CCEEEE-------eeCCCcEEEEeCC-cccccccc-----CccCEEEEEec-C-CEEEEEeCCCeEEEEe
Q 047728          112 HIYSLAAA--GDLLYT-------GSDSKNIRVWKNQ-REFSGFKS-----NSGLVKAIVIS-N-EKIFSGHQDGKIRVWK  174 (474)
Q Consensus       112 ~i~~~~~~--~~~l~t-------gs~dg~v~vwd~~-~~~~~~~~-----h~~~V~~i~~~-~-~~l~s~~~dg~i~vwd  174 (474)
                      ...+++++  ++++++       +..++.|.+||.. ..+..+..     +...+.+++++ . ..|+.+...+.|.+|+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d   98 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEe
Confidence            34566664  777777       6778899999843 33333322     45678899997 3 5777776666799999


Q ss_pred             cCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC------------
Q 047728          175 VSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD------------  241 (474)
Q Consensus       175 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------------  241 (474)
                      .+ ++.... ....  .                          ......+.++++.++++++++...+            
T Consensus        99 ~~-g~~~~~~~~~~--~--------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           99 TD-GTFEEIAKKDS--E--------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             TT-SCEEECCSBCT--T--------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CC-CCEEEEEeccC--C--------------------------CccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence            87 543211 0000  0                          0023457899999999887776654            


Q ss_pred             ---CcEEEEEcCCcceeeeeeecCcceeEEEec----CCC-eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeeccc-cc
Q 047728          242 ---KTFKVWRTSDYKCLESVIAHDDAVNSIVAG----FDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQE-CA  311 (474)
Q Consensus       242 ---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~----~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~  311 (474)
                         +.|..||.. ++... +..+......++++    +++ .++++ ..++.|.+||+.................+. ..
T Consensus       150 ~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T 1pjx_A          150 EKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             SSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             CCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC
Confidence               567777765 44433 33334456889999    998 55444 567899999986322111111112222233 56


Q ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEE-EeCCCcEEEEECCCC
Q 047728          312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFS-GSADMSICIWRRKEN  382 (474)
Q Consensus       312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s-gs~dg~i~iwd~~~~  382 (474)
                      +..++++++++++++...++.|.+||.+++.... .+..+...+  ++++++++.|+. ...++.|..|++...
T Consensus       228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM-RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE-EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE-EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            7889999999988887788899999988554332 222332333  455578885554 455688999998643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.2e-11  Score=116.04  Aligned_cols=171  Identities=10%  Similarity=0.003  Sum_probs=121.5

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCCccc------------cccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcc
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQREF------------SGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDAS  181 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~~------------~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~  181 (474)
                      .+++....+|++|+.++ +++|++....            .....+.. |+.++|++..|+++ .++.|++||+.+....
T Consensus        43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~  119 (388)
T 1xip_A           43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEF  119 (388)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCE
T ss_pred             EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhcc
Confidence            34444578999999885 6669743221            12234566 99999977888888 8899999999876532


Q ss_pred             eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec
Q 047728          182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH  261 (474)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  261 (474)
                      ..                                ...|...+.++.+.+.  .+++++.||.|.+||+.++....    +
T Consensus       120 ~~--------------------------------~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~  161 (388)
T 1xip_A          120 RT--------------------------------VTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L  161 (388)
T ss_dssp             EE--------------------------------EEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E
T ss_pred             Cc--------------------------------cceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c
Confidence            11                                1125566777776654  38889999999999999877643    4


Q ss_pred             CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee--eeeee---cccccEEEEEEcCCCCEEEE
Q 047728          262 DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF--SQTLL---KQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       262 ~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~---~~~~~v~~l~~~~~~~~l~~  326 (474)
                      ...|.|++|+|+| ++.|..||.+++|+........+..+  .....   .|...|.++.|.+++.++++
T Consensus       162 ~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          162 AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            5689999999999 77899999999998764431001111  01112   36788999999999988876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.38  E-value=2.4e-10  Score=109.52  Aligned_cols=233  Identities=10%  Similarity=0.081  Sum_probs=153.8

Q ss_pred             cCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728          149 GLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL  226 (474)
Q Consensus       149 ~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  226 (474)
                      .....|+++  ++.+++...++.|++||.+++.......                                 ...... +
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------~~~~~~-i  176 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------GFKGGK-P  176 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------TCCBCB-C
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------cCCCCc-e
Confidence            357788887  3445555567899999998765432111                                 112233 8


Q ss_pred             EecCCCCEEEEEECCC--cEEEEEcCCcceeeee----eecCcceeEEEecC-CCeEEEeeCCCcEEEEEcccCCCceee
Q 047728          227 SMSEDQNLLYSASWDK--TFKVWRTSDYKCLESV----IAHDDAVNSIVAGF-DGLVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       227 ~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~----~~~~~~v~~v~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      +|+++++.|+++..++  .|.+|+...+.....+    ......+.+++++| ++.|+++..++.|+.||......  ..
T Consensus       177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~  254 (409)
T 3hrp_A          177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TL  254 (409)
T ss_dssp             EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EE
T ss_pred             eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EE
Confidence            9999999999988766  7899988765543333    21446678999999 56666677788999999874431  11


Q ss_pred             eeeeeeecccccE--EEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeeec-----------------ceeeEEEE
Q 047728          300 FFSQTLLKQECAV--TALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRGH-----------------KLAILCLV  359 (474)
Q Consensus       300 ~~~~~~~~~~~~v--~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------~~~v~~~~  359 (474)
                      ............-  ..++|+|+ +.++++-..++.|+.|+.....   ..+.++                 ...-+++.
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d  331 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC---EWFCGSATQKTVQDGLREEALFAQPNGMTVD  331 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE---EEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE---EEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence            1000011111111  38999995 5566666678899999976541   112221                 12346777


Q ss_pred             ecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCC---------------ccceEEEEEeeCCccccccceEEEEEecCC
Q 047728          360 TAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGH---------------SGPVKCLAVEKDDESLSREKRWILYSGSLD  423 (474)
Q Consensus       360 ~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D  423 (474)
                      ++|+++++-. .++.|+.|+..++..   ..+.++               -.....+++++++.        ++++-..+
T Consensus       332 ~dG~lyvad~~~~~~I~~~~~~~G~v---~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~--------lyVad~~n  400 (409)
T 3hrp_A          332 EDGNFYIVDGFKGYCLRKLDILDGYV---STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG--------YWIAEAWG  400 (409)
T ss_dssp             TTCCEEEEETTTTCEEEEEETTTTEE---EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE--------EEEEESTT
T ss_pred             CCCCEEEEeCCCCCEEEEEECCCCEE---EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC--------EEEEECCC
Confidence            8899877777 889999999877753   333333               24588999999987        78888888


Q ss_pred             CcEEEEEc
Q 047728          424 KSVKMWRV  431 (474)
Q Consensus       424 g~i~vw~~  431 (474)
                      ++|+.+++
T Consensus       401 ~~Ir~i~~  408 (409)
T 3hrp_A          401 KAIRKYAV  408 (409)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEe
Confidence            89988876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=4.4e-11  Score=112.14  Aligned_cols=168  Identities=12%  Similarity=-0.003  Sum_probs=121.0

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---------eee-eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEc
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---------CLE-SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRR  290 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~-~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~  290 (474)
                      .++.+++++...++++|+.++ +++|++.+.+         ... ....+.. |+.++|  ++ .|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            689999999999999999875 6669876443         111 2234566 999999  55 77777 8899999999


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                      +.....      .....+...+.++.+.+..  +++++.||.|.+||+.......   ........|++++|  ++.|..
T Consensus       114 ~sl~~~------~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          114 EELSEF------RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             SSTTCE------EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEET
T ss_pred             hhhhcc------CccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEc
Confidence            865532      2233445567777776543  8888999999999998665431   22334445555566  788999


Q ss_pred             CCcEEEEECCCCceEEEEee------c---CCccceEEEEEeeCCc
Q 047728          371 DMSICIWRRKENEHICLSML------T---GHSGPVKCLAVEKDDE  407 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~------~---~h~~~v~~l~~~~~~~  407 (474)
                      ||.+++|+....+.....++      .   +|...|.+|.|.+++.
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~  226 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD  226 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence            99999999887762112334      2   4778999999999887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.35  E-value=1.2e-09  Score=99.93  Aligned_cols=214  Identities=12%  Similarity=0.096  Sum_probs=137.0

Q ss_pred             CEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728          150 LVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL  226 (474)
Q Consensus       150 ~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  226 (474)
                      .-.+..|+   +..+++...++.|..||..++....                                  ......+.++
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------------~~~~~~~~~i   59 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----------------------------------VTMDAPVSSV   59 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE----------------------------------EECSSCEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------------EeCCCceEEE
Confidence            34566666   2355566678899999988764311                                  0134568899


Q ss_pred             EecCCCCEEEEEECCCcEEEEEcCCcceeeeeee----cCcceeEEEecCCCeEEEeeC----------CCcEEEEEccc
Q 047728          227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA----HDDAVNSIVAGFDGLVFTGSA----------DGTVKVWRREL  292 (474)
Q Consensus       227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~l~~~~~----------dg~i~iwd~~~  292 (474)
                      +++++++++++ . +..|.+||..+++.......    ....++.+++.++|.++.++.          ...-.+|.+..
T Consensus        60 ~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           60 ALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP  137 (297)
T ss_dssp             EEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred             EECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence            99999995554 4 56799999988765433222    123578899999995444432          23345666553


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecC--ccccc-ceee---eecc--eeeEEEEecCC
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWERE--LNLSH-GGVL---RGHK--LAILCLVTAGN  363 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~--~~~~~-~~~~---~~~~--~~v~~~~~~~~  363 (474)
                      ....      ............++|+|+++.|++ .+.++.|.+||+.  ++... ...+   ..+.  ..-+++.++|+
T Consensus       138 ~g~~------~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          138 DHHV------KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             TSCE------EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             CCCE------EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            3221      112223345688999999987654 5567889999873  33211 0111   1111  22356667888


Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe-eCCc
Q 047728          364 LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE-KDDE  407 (474)
Q Consensus       364 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~  407 (474)
                      +.++...++.|..||..+++  .+..+..+...+++++|. |+++
T Consensus       212 lwva~~~~~~v~~~d~~tG~--~~~~i~~p~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVTGK--RLQTVKLPVDKTTSCCFGGKNYS  254 (297)
T ss_dssp             EEEEEETTTEEEEECTTTCC--EEEEEECSSSBEEEEEEESGGGC
T ss_pred             EEEEEcCCCEEEEEcCCCce--EEEEEECCCCCceEEEEeCCCCC
Confidence            88888888899999998777  345566666789999998 7776

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.34  E-value=1.2e-09  Score=103.61  Aligned_cols=267  Identities=10%  Similarity=0.026  Sum_probs=162.5

Q ss_pred             EEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728          114 YSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT  191 (474)
Q Consensus       114 ~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  191 (474)
                      ..+..++..|+.++.++.|..+|..  +.+................++.++.++.++.|..+|..+++............
T Consensus        97 ~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A           97 GGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             EEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred             cCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence            3455568888889999999999854  33333332222222233447789999999999999999887665443211000


Q ss_pred             cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc-------
Q 047728          192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA-------  264 (474)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------  264 (474)
                                             .+.....    ...  .+..++.++.++.|..+|..+++.+.........       
T Consensus       177 -----------------------~~~~~~~----~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  227 (376)
T 3q7m_A          177 -----------------------SLRGESA----PTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR  227 (376)
T ss_dssp             -------------------------CCCCC----CEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred             -----------------------eecCCCC----cEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence                                   0000111    111  1457888888999999999999987766532110       


Q ss_pred             ---eeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728          265 ---VNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       265 ---v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                         +.......++.+++++.++.|..+|.+.+.....      .  .......+..  ++..+++++.++.|..+|..++
T Consensus       228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~------~--~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK------R--ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE------E--CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred             ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee------c--cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence               1111111245788888999999999876543111      1  1122333333  4667888888999999999888


Q ss_pred             cccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec
Q 047728          342 LSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS  421 (474)
Q Consensus       342 ~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s  421 (474)
                      +...................+..|+.++.+|.|.++|..+++..  .........+.......++         .|+.++
T Consensus       298 ~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~--~~~~~~~~~~~~~~~~~~~---------~l~v~~  366 (376)
T 3q7m_A          298 VTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFV--AQQKVDSSGFQTEPVAADG---------KLLIQA  366 (376)
T ss_dssp             CEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE--EEEECCTTCBCSCCEEETT---------EEEEEB
T ss_pred             cEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEE--EEEecCCCcceeCCEEECC---------EEEEEe
Confidence            65433221111122222335788999999999999999998843  3333322333322222344         578888


Q ss_pred             CCCcEEEEE
Q 047728          422 LDKSVKMWR  430 (474)
Q Consensus       422 ~Dg~i~vw~  430 (474)
                      .||.|..|+
T Consensus       367 ~~G~l~~~~  375 (376)
T 3q7m_A          367 KDGTVYSIT  375 (376)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=4.7e-09  Score=99.48  Aligned_cols=269  Identities=10%  Similarity=0.078  Sum_probs=164.6

Q ss_pred             EcCCEEEEeeCCCcEEEEeCC--ccccccccC---------ccCE-EEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          118 AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSN---------SGLV-KAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       118 ~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h---------~~~V-~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      ..++.|++++.++.|..+|..  +.+-.+...         ...+ ..+...++.++.++.++.|..+|..+++......
T Consensus        51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            347788888888889888853  333222221         1223 4455568899999999999999999987665433


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV  265 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v  265 (474)
                      .....                            ...+    ..  .+..++.++.++.|..+|..+++.+..........
T Consensus       131 ~~~~~----------------------------~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          131 VAGEA----------------------------LSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             CSSCC----------------------------CSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred             CCCce----------------------------EcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence            22100                            1111    11  24578888899999999999999887765432211


Q ss_pred             -----eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcC--CCCEEEEEcCCCcEEEee
Q 047728          266 -----NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISP--DAAIVYCGSSDGLVNFWE  337 (474)
Q Consensus       266 -----~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d  337 (474)
                           ...... ++.++++..++.|..+|...+............... ...+..+...|  .+..+++++.++.+..+|
T Consensus       177 ~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          177 SLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             --CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             eecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence                 122222 458888999999999998765432111100000000 00000011111  356778888899999999


Q ss_pred             cCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec-CCccceEEEEEeeCCccccccceEE
Q 047728          338 RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT-GHSGPVKCLAVEKDDESLSREKRWI  416 (474)
Q Consensus       338 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~  416 (474)
                      .++++.......   .....+..++..++.++.++.|..+|..+++..  .... .....+......  +.        .
T Consensus       256 ~~tG~~~w~~~~---~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~--~~--------~  320 (376)
T 3q7m_A          256 LRSGQIMWKREL---GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTL--WTQSDLLHRLLTSPVLY--NG--------N  320 (376)
T ss_dssp             TTTCCEEEEECC---CCEEEEEEETTEEEEEETTCCEEEEETTTCCEE--EEECTTTTSCCCCCEEE--TT--------E
T ss_pred             CCCCcEEeeccC---CCCCCceEECCEEEEEcCCCeEEEEECCCCcEE--EeecccCCCcccCCEEE--CC--------E
Confidence            988765433221   223445557889999999999999999998743  3333 112222223332  23        6


Q ss_pred             EEEecCCCcEEEEEccCCCC
Q 047728          417 LYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       417 l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      |+.++.+|.|.++|..+++.
T Consensus       321 l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          321 LVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCE
T ss_pred             EEEEeCCCeEEEEECCCCcE
Confidence            88888999999999988743

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.30  E-value=2.1e-09  Score=102.16  Aligned_cols=275  Identities=8%  Similarity=-0.002  Sum_probs=171.6

Q ss_pred             cCCEEEEeeC-C----CcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCCC
Q 047728          119 AGDLLYTGSD-S----KNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSKD  179 (474)
Q Consensus       119 ~~~~l~tgs~-d----g~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~~  179 (474)
                      +++.+++... +    +.|.++|..  +.+..+.....+  .++++  +++|+++.          .++.|.++|..+.+
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            4565555544 2    689999954  444555444445  67777  66677665          46789999999887


Q ss_pred             cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeee
Q 047728          180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLES  257 (474)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~  257 (474)
                      ......+......                         ........+.|+||+++|+++..  ++.|.+.|+.+++.+..
T Consensus       161 vv~~I~v~g~~r~-------------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~  215 (426)
T 3c75_H          161 PIADIELPDAPRF-------------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRM  215 (426)
T ss_dssp             EEEEEEETTCCCC-------------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCcccc-------------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence            6544333200000                         01122346789999999999874  57899999999999888


Q ss_pred             eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc-EEEEEEcCCCCEEEEEcCCCcEE
Q 047728          258 VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA-VTALAISPDAAIVYCGSSDGLVN  334 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i~  334 (474)
                      +.....    ....|++  .+++.+.||.+.+.+...... ... ....+.....+ ...+.+.+++..++.....+.|.
T Consensus       216 I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~  289 (426)
T 3c75_H          216 LDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGET-KVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIF  289 (426)
T ss_dssp             EECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCC-EEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEE
T ss_pred             EEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcE-EEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEE
Confidence            764221    2333443  666777888888888733221 110 00011111111 12356788888887778889999


Q ss_pred             EeecCcccccc-ee------------eeecceeeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEEeec
Q 047728          335 FWERELNLSHG-GV------------LRGHKLAILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLSMLT  391 (474)
Q Consensus       335 v~d~~~~~~~~-~~------------~~~~~~~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~~~  391 (474)
                      +.|........ ..            ........+.++++++.+++...          ++.|.++|..+.+.+  ..+.
T Consensus       290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv--~~I~  367 (426)
T 3c75_H          290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI--NKIE  367 (426)
T ss_dssp             EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEEE
T ss_pred             EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE--EEEE
Confidence            99985432110 00            11122223688999887777642          357999999998843  4443


Q ss_pred             CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      . ......++|+||++..      ++++...++.|.++|+.+.+
T Consensus       368 v-g~~P~gia~spDg~~~------lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          368 L-GHEIDSINVSQDAEPL------LYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             E-EEEECEEEECCSSSCE------EEEEETTTTEEEEEETTTCC
T ss_pred             C-CCCcCeEEEccCCCEE------EEEEcCCCCeEEEEECCCCC
Confidence            2 1258899999998731      44444469999999999874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=4.2e-10  Score=107.80  Aligned_cols=198  Identities=13%  Similarity=0.060  Sum_probs=133.7

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCc
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKG  296 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~  296 (474)
                      ......|+|+++++++++...++.|++||..++........ ..... +++++++ .|+++..++  .|.+|+.......
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            34678999999998777777779999999988776554443 33334 8999998 777777766  7888887643321


Q ss_pred             eeeeeeeeeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee---eeec-c-e-e-eEEEEec-CCEEEE
Q 047728          297 TKHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV---LRGH-K-L-A-ILCLVTA-GNLVFS  367 (474)
Q Consensus       297 ~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~-~-~-~-v~~~~~~-~~~l~s  367 (474)
                      .  . ...... ....+.+++++|++..|+++..++.|+.||..+.......   ..+. . . . -++++++ +.++++
T Consensus       208 ~--~-~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          208 T--R-IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             E--E-EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             E--E-eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            0  1 111112 4456788999996556666777889999998766422110   1111 1 1 1 5778885 556666


Q ss_pred             EeCCCcEEEEECCCCceEEEEeecCC---------------ccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEc
Q 047728          368 GSADMSICIWRRKENEHICLSMLTGH---------------SGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRV  431 (474)
Q Consensus       368 gs~dg~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~  431 (474)
                      -..++.|+.|+......    .+.++               -.....+++++++.        ++++-. .+++|+.|++
T Consensus       285 d~~~~~I~~~~~~g~~~----~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~--------lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          285 DQNLSSVYKITPDGECE----WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN--------FYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             ETTTTEEEEECTTCCEE----EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC--------EEEEETTTTCEEEEEET
T ss_pred             eCCCCEEEEEecCCCEE----EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC--------EEEEeCCCCCEEEEEEC
Confidence            66788999999875421    22222               13478999999998        788887 8999999997


Q ss_pred             cCC
Q 047728          432 SEQ  434 (474)
Q Consensus       432 ~~~  434 (474)
                      .++
T Consensus       353 ~~G  355 (409)
T 3hrp_A          353 LDG  355 (409)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.27  E-value=6.8e-09  Score=94.94  Aligned_cols=222  Identities=12%  Similarity=0.091  Sum_probs=134.2

Q ss_pred             CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728          120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC  198 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (474)
                      +.++++...++.|..||..............+.+++++ ...|+.+. ++.|.+||.++++.........          
T Consensus        25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~----------   93 (297)
T 3g4e_A           25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDN----------   93 (297)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCT----------
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCC----------
Confidence            55777777889999999653322223345678999998 33355555 5579999988765322111000          


Q ss_pred             ecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC---------CcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728          199 SMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD---------KTFKVWRTSDYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~v~  269 (474)
                                        ......++++++.|+|+++++...+         ..-.+|.+.....+..+..+....+.++
T Consensus        94 ------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           94 ------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             ------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEE
T ss_pred             ------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceE
Confidence                              0012347889999999866654322         2345555543222333334445668999


Q ss_pred             ecCCC--eEEEeeCCCcEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce
Q 047728          270 AGFDG--LVFTGSADGTVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG  346 (474)
Q Consensus       270 ~~~~~--~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  346 (474)
                      |+|++  ++++.+.++.|.+||+.. ...................+..++++++|++.++....+.|.+||..+++....
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence            99998  445666688999999742 221111111122223345688999999998888877788999999987655433


Q ss_pred             eeee-cceeeEEEE-ecCCEEEEEeC
Q 047728          347 VLRG-HKLAILCLV-TAGNLVFSGSA  370 (474)
Q Consensus       347 ~~~~-~~~~v~~~~-~~~~~l~sgs~  370 (474)
                      +... .....++|. ++++.|+..+.
T Consensus       236 i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          236 VKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EECCCCCceEEEEeCCCCCEEEEEcC
Confidence            3322 223345555 56666655553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=1.8e-09  Score=110.43  Aligned_cols=279  Identities=9%  Similarity=0.070  Sum_probs=165.1

Q ss_pred             cCCEEEEeeCCCcEEEEeC--CccccccccCcc----------C-EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          119 AGDLLYTGSDSKNIRVWKN--QREFSGFKSNSG----------L-VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       119 ~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~----------~-V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      .+..|++++.++.|..+|.  ++.+-.+.....          . -..+.+.++.|+.++.|+.|..+|..+++......
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            4667777777888888874  333332221110          0 12234568899999999999999999998776544


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------CCCcEEEEEcCCcceeeeee
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------WDKTFKVWRTSDYKCLESVI  259 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~  259 (474)
                      ......                      ..+.....++    +. ++ .++.++      .++.|+.||.++++.+..+.
T Consensus       149 ~~~~~~----------------------~~~~~~~sP~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          149 TRADHK----------------------RSYTITGAPR----VV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             CCSCTT----------------------SCCBCCSCCE----EE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CcCCCC----------------------CCccccCCcE----EE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            320000                      0000011111    11 33 444443      36899999999999887765


Q ss_pred             ecC-------------------------------cceeEEEecCCC-eEEEeeCCCc-------------------EEEE
Q 047728          260 AHD-------------------------------DAVNSIVAGFDG-LVFTGSADGT-------------------VKVW  288 (474)
Q Consensus       260 ~~~-------------------------------~~v~~v~~~~~~-~l~~~~~dg~-------------------i~iw  288 (474)
                      ...                               .....+++.++. +++.+..++.                   |..|
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210                               011246777765 7888877763                   9999


Q ss_pred             EcccCCCceeeeeeee-e--ecccccEEEEEEcCCCC---EEEEEcCCCcEEEeecCcccccceeeee------------
Q 047728          289 RRELQGKGTKHFFSQT-L--LKQECAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVLRG------------  350 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~-~--~~~~~~v~~l~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------  350 (474)
                      |.++++.......... .  ......+.......+++   .++.++.+|.++++|.++++.+......            
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            9887654221110000 0  00111222222223554   7888999999999999888654211100            


Q ss_pred             ----------------------------cceeeEEEEecCCEEEEEeC--------------------------------
Q 047728          351 ----------------------------HKLAILCLVTAGNLVFSGSA--------------------------------  370 (474)
Q Consensus       351 ----------------------------~~~~v~~~~~~~~~l~sgs~--------------------------------  370 (474)
                                                  +.-.-++++++..++++...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                        00111566777777776532                                


Q ss_pred             -------------CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          371 -------------DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       371 -------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                                   +|.|..||+.+++.  +.....+ .++..-.+...+.        +++.++.||.|+.||..+++.
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagg--------lvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYV-TIFNGGTLSTAGN--------LVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTT--------EEEEECTTSEEEEEETTTCCE
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCe--EeEccCC-CCccCccceECCC--------EEEEECCCCcEEEEECCCCcc
Confidence                         37799999999984  3344333 2344445666666        888999999999999999854

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.23  E-value=4.1e-09  Score=96.84  Aligned_cols=232  Identities=8%  Similarity=0.056  Sum_probs=141.0

Q ss_pred             eeeeecCcEEEEE--EcCC-EEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEe-CCCeEEEEecCCCC
Q 047728          105 SLVREEGHIYSLA--AAGD-LLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGH-QDGKIRVWKVSSKD  179 (474)
Q Consensus       105 ~l~~h~~~i~~~~--~~~~-~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~-~dg~i~vwd~~~~~  179 (474)
                      .+...........  ++++ +++++..++.|..|+.......+..+...+..++++ ...|+++. .++.|.+|+.+ ++
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            3333333344444  4577 778888889999998765566666677789999998 33455554 45789999875 33


Q ss_pred             cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE----EEC-------------CC
Q 047728          180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS----ASW-------------DK  242 (474)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s----~s~-------------dg  242 (474)
                      ........  .                          ......+.++++.++|+++++    |..             .+
T Consensus       118 ~~~~~~~~--~--------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A          118 AHLLVGRY--A--------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             EEEEECEE--T--------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             EEEEEecc--C--------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence            21110000  0                          002245678999999988876    332             25


Q ss_pred             cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC------CcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728          243 TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD------GTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL  315 (474)
Q Consensus       243 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  315 (474)
                      .|..||..+++.....  .......++|+|++ .|+.+...      +.|.+|++..... ...  .............+
T Consensus       170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~--~~~~~~~~~~pdgi  244 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDR--RHFASVPDGLPDGF  244 (305)
T ss_dssp             EEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEE--EEEECCSSSCCCSE
T ss_pred             eEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCC--eEEEECCCCCCCeE
Confidence            6777877666654433  34556889999999 56666554      6899999874321 100  01111123345678


Q ss_pred             EEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCc
Q 047728          316 AISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMS  373 (474)
Q Consensus       316 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~  373 (474)
                      +++++|++. ++..+ .|.+|+.+.. ....+........+++.++++.|+.++.++.
T Consensus       245 ~~d~~G~lw-v~~~~-gv~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          245 CVDRGGWLW-SSSGT-GVCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             EECTTSCEE-ECCSS-EEEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred             EECCCCCEE-EecCC-cEEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence            999999944 44444 4999998533 3322322223344566678888888877643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.23  E-value=8.9e-10  Score=112.39  Aligned_cols=274  Identities=7%  Similarity=0.076  Sum_probs=167.5

Q ss_pred             cCCEEEEeeCCCcEEEEeCC--ccccccccCc-----------cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          119 AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS-----------GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       119 ~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~-----------~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      .+..|++++.++.|..+|..  +.+-.+....           .....+++.++.|+.++.|+.|..+|..+++......
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            36666667767777777733  3222222110           0112345568899999999999999999998776554


Q ss_pred             ec-ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC------CCcEEEEEcCCcceeeee
Q 047728          186 VG-TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW------DKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       186 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~  258 (474)
                      .. .....                       ..-...++    +  .+..++.++.      ++.|+.||..+++.+..+
T Consensus       156 ~~~~~~~~-----------------------~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          156 TFEGQKGS-----------------------LTITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTTTCCSS-----------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCcCcCcC-----------------------cccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            32 10000                       00000111    1  2345555543      689999999999998777


Q ss_pred             eecCcc--------------------------------eeEEEecCCC-eEEEeeCCC-------------------cEE
Q 047728          259 IAHDDA--------------------------------VNSIVAGFDG-LVFTGSADG-------------------TVK  286 (474)
Q Consensus       259 ~~~~~~--------------------------------v~~v~~~~~~-~l~~~~~dg-------------------~i~  286 (474)
                      ......                                ...+++.+++ .++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            542211                                1246777776 777776654                   488


Q ss_pred             EEEcccCCCceeeeeeeeeecc-------cccEEEEEEcCCC---CEEEEEcCCCcEEEeecCcccccceeeeec-----
Q 047728          287 VWRRELQGKGTKHFFSQTLLKQ-------ECAVTALAISPDA---AIVYCGSSDGLVNFWERELNLSHGGVLRGH-----  351 (474)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----  351 (474)
                      .+|.++++......    ...+       ......+....+|   ..++.++.+|.++++|.++++.+.......     
T Consensus       287 AlD~~TG~~~W~~~----~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQ----ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             EECTTTCCEEEEEE----SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEECCCCCEEEEEe----cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence            88887654321111    1111       1122223333466   688899999999999998886643322110     


Q ss_pred             -------------------------------ceeeEEEEecCCEEEEEeCC-----------------------------
Q 047728          352 -------------------------------KLAILCLVTAGNLVFSGSAD-----------------------------  371 (474)
Q Consensus       352 -------------------------------~~~v~~~~~~~~~l~sgs~d-----------------------------  371 (474)
                                                     .-...+++++..++++...+                             
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                                           00134677777888775432                             


Q ss_pred             --------------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          372 --------------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       372 --------------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                                    |.|..||+.+++..  .... +..++....+..++.        +++.++.||.+++||..+++.
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~--W~~~-~~~~~~~g~~~~~g~--------~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAA--WSVE-HVSPWNGGTLTTAGN--------VVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEE--EEEE-ESSSCCCCEEEETTT--------EEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEE--eecC-CCCCCcCcceEeCCC--------EEEEECCCCcEEEEECCCCce
Confidence                          78999999998843  3333 334455566777777        788889999999999999853

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=2.1e-09  Score=99.73  Aligned_cols=264  Identities=16%  Similarity=0.129  Sum_probs=161.7

Q ss_pred             cCcEEEEEEc-CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          110 EGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       110 ~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      ...+.++..+ +..|+.++.+  |..+|.. +.+..+...........+.++.|+.++.++.|..+|.. ++....... 
T Consensus        59 ~~~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-  134 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKT-  134 (330)
T ss_dssp             GEEEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEEC-
T ss_pred             CCcccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcC-
Confidence            3445677776 5577777766  8888743 33333332332233333447888999999999999987 543322111 


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS  267 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~  267 (474)
                                                     ....+.++...+++. |+.++.++.|..+|.. ++.+..+......+.+
T Consensus       135 -------------------------------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          135 -------------------------------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA  181 (330)
T ss_dssp             -------------------------------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred             -------------------------------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence                                           222344556666665 6667888999999988 8777777666667778


Q ss_pred             EEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee
Q 047728          268 IVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV  347 (474)
Q Consensus       268 v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  347 (474)
                      +...+++.+..++  +.|..+| ..+..      ..........+.++...+++.+. +++.++.|..+|.... .....
T Consensus       182 ~~~d~~g~l~v~t--~~l~~~d-~~g~~------~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g~-~~~~~  250 (330)
T 3hxj_A          182 ASIGKDGTIYFGS--DKVYAIN-PDGTE------KWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINPDGT-EKWRF  250 (330)
T ss_dssp             CEECTTCCEEEES--SSEEEEC-TTSCE------EEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECTTSC-EEEEE
T ss_pred             eEEcCCCEEEEEe--CEEEEEC-CCCcE------EEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECCCCC-EeEEe
Confidence            8887788777776  8899998 43221      11222233557778888877654 4667788888875332 22222


Q ss_pred             eeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728          348 LRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV  426 (474)
Q Consensus       348 ~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i  426 (474)
                      .. .......+..+ +..|+.++.+|.|..+|. +++.  +..+......+.++...+++.         |+.++.+|.+
T Consensus       251 ~~-~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~--~~~~~~~~~~~~~~~~d~~g~---------l~~gt~~G~~  317 (330)
T 3hxj_A          251 KT-GKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE--KWNFETGSWIIATPVIDENGT---------IYFGTRNGKF  317 (330)
T ss_dssp             EC-SSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE--EEEEECSSCCCSCCEECTTCC---------EEEECTTSCE
T ss_pred             eC-CCCccccceEcCCCeEEEecCCCCEEEECC-CCcE--EEEEEcCCccccceEEcCCCE---------EEEEcCCCeE
Confidence            11 11111112223 557778888989999996 4553  333333445677777777775         6778899999


Q ss_pred             EEEEccCC
Q 047728          427 KMWRVSEQ  434 (474)
Q Consensus       427 ~vw~~~~~  434 (474)
                      ++......
T Consensus       318 ~~~~~~~~  325 (330)
T 3hxj_A          318 YALFNLEH  325 (330)
T ss_dssp             EEEEC---
T ss_pred             EEEecccc
Confidence            99887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.19  E-value=9.8e-09  Score=104.92  Aligned_cols=283  Identities=17%  Similarity=0.143  Sum_probs=163.6

Q ss_pred             EEcCCEEEEeeCCCcEEEEeC--CccccccccC--c---cCEE-EEEecCCEEEEEe------CCCeEEEEecCCCCcce
Q 047728          117 AAAGDLLYTGSDSKNIRVWKN--QREFSGFKSN--S---GLVK-AIVISNEKIFSGH------QDGKIRVWKVSSKDASI  182 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h--~---~~V~-~i~~~~~~l~s~~------~dg~i~vwd~~~~~~~~  182 (474)
                      +..+..|++++.|+.|..+|.  ++.+-.+...  .   ..+. +..+.++.++.+.      .+|.|..||..+++...
T Consensus       118 ~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          118 AVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             EEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            445778889999999999984  3443333221  0   1111 1112356666654      37899999999998876


Q ss_pred             eeeecc-cCccceeeeeecCCCCeEEE--eeecccee---eeccCCeeEEEecCCCCEEEEEECCCc-------------
Q 047728          183 HKRVGT-LPTFKDFIKCSMKPSNYIEV--RRHRNGLW---IKHFDAISSLSMSEDQNLLYSASWDKT-------------  243 (474)
Q Consensus       183 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~dg~-------------  243 (474)
                      ...... .+... +.      ...+..  .......|   .++......+++.|+..+++.++.++.             
T Consensus       198 ~~~~~~~~p~~~-~~------~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd  270 (689)
T 1yiq_A          198 RFYTVPGDPKLP-PE------GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGD  270 (689)
T ss_dssp             EEESSCCCTTSC-CC------SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSC
T ss_pred             EecccCCCcccc-cc------cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence            554211 00000 00      000000  00000000   012222346788898889999987764             


Q ss_pred             ------EEEEEcCCcceeeeeeec--C-------cceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee-
Q 047728          244 ------FKVWRTSDYKCLESVIAH--D-------DAVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ-  303 (474)
Q Consensus       244 ------i~iwd~~~~~~~~~~~~~--~-------~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  303 (474)
                            |..||..+++.+..+...  .       .++.......++    .++.++.+|.++++|.++++......... 
T Consensus       271 ~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~  350 (689)
T 1yiq_A          271 NLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ  350 (689)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred             ceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc
Confidence                  999999999998877642  1       111111222244    58889999999999988765421110000 


Q ss_pred             ----e-----------------eecccc-----------cEEEEEEcCCCCEEEEEcC----------------------
Q 047728          304 ----T-----------------LLKQEC-----------AVTALAISPDAAIVYCGSS----------------------  329 (474)
Q Consensus       304 ----~-----------------~~~~~~-----------~v~~l~~~~~~~~l~~~~~----------------------  329 (474)
                          .                 ......           .-..++++|+..++++...                      
T Consensus       351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~  430 (689)
T 1yiq_A          351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY  430 (689)
T ss_dssp             SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred             ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence                0                 000000           0112788898888877532                      


Q ss_pred             -----------------------CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728          330 -----------------------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC  386 (474)
Q Consensus       330 -----------------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~  386 (474)
                                             +|.|..||+.+++..-....+.....-.+...+.+++.|+.||.|+.||.++++.  
T Consensus       431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~--  508 (689)
T 1yiq_A          431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK--  508 (689)
T ss_dssp             CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE--
T ss_pred             ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcc--
Confidence                                   3779999999887654443332222235666889999999999999999999984  


Q ss_pred             EEeecCCcc-ceEEEEEeeCCcc
Q 047728          387 LSMLTGHSG-PVKCLAVEKDDES  408 (474)
Q Consensus       387 ~~~~~~h~~-~v~~l~~~~~~~~  408 (474)
                      +..+....+ ...-+.|..+++.
T Consensus       509 lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          509 LWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceeeeCCCCcccCceEEEECCEE
Confidence            444443322 2244667788773

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.18  E-value=2.5e-08  Score=92.42  Aligned_cols=210  Identities=12%  Similarity=0.089  Sum_probs=128.3

Q ss_pred             EEEEecC--C-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          152 KAIVISN--E-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       152 ~~i~~~~--~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      .+..|+.  + .+++...++.|..|+.++++... .                                 .....+.++++
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~---------------------------------~~~~~v~~i~~   97 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-H---------------------------------ALPFMGSALAK   97 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E---------------------------------ECSSCEEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E---------------------------------ECCCcceEEEE
Confidence            3455552  3 45566667889999887653211 0                                 02346889999


Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCcceeeeeee----cCcceeEEEecCCCeEEEeeCC-----CcEEEEEcccCCCceee
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIA----HDDAVNSIVAGFDGLVFTGSAD-----GTVKVWRRELQGKGTKH  299 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~  299 (474)
                      .++++++++. .+ .|.+||..+++.......    ....+++++++++|.++.++.+     +...||.+. ...  . 
T Consensus        98 ~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~--~-  171 (326)
T 2ghs_A           98 ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGK--V-  171 (326)
T ss_dssp             EETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTE--E-
T ss_pred             eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCc--E-
Confidence            9998776654 44 499999988775432211    1235789999999944444432     234455444 221  1 


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecC--cc-ccc-ceeee---ecc--eeeEEEEecCCEEEEEe
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERE--LN-LSH-GGVLR---GHK--LAILCLVTAGNLVFSGS  369 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~--~~-~~~-~~~~~---~~~--~~v~~~~~~~~~l~sgs  369 (474)
                         ............++|+|+++.|+.+ +.++.|.+||+.  ++ ... ...+.   ...  ..-+++..+|++.++..
T Consensus       172 ---~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~  248 (326)
T 2ghs_A          172 ---TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW  248 (326)
T ss_dssp             ---EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred             ---EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence               1111223356789999999877555 557899999985  43 211 11111   111  22355566788777776


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCccceEEEEEe-eCCc
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE-KDDE  407 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~  407 (474)
                      .++.|.+||.. ++.  +..+..+...+++++|. +++.
T Consensus       249 ~~~~v~~~d~~-g~~--~~~i~~~~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          249 GEGAVDRYDTD-GNH--IARYEVPGKQTTCPAFIGPDAS  284 (326)
T ss_dssp             TTTEEEEECTT-CCE--EEEEECSCSBEEEEEEESTTSC
T ss_pred             CCCEEEEECCC-CCE--EEEEECCCCCcEEEEEecCCCC
Confidence            77899999984 442  34555566679999998 7766

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=1.6e-08  Score=103.16  Aligned_cols=307  Identities=15%  Similarity=0.108  Sum_probs=179.0

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeC--CccccccccC-c----cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCcc
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSN-S----GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDAS  181 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h-~----~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~  181 (474)
                      ++..+..|++++.|+.|..+|.  ++.+-.+..+ .    ..+. .....++.++.++.      +|.|+.||..+++..
T Consensus       124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence            4446788899999999999984  4444444332 1    1111 12233667777664      799999999999887


Q ss_pred             eeeeecccCccceeeeeecCCCCeEEEeeeccceee--eccCCeeEEEecCCCCEEEEEECCC-----------------
Q 047728          182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI--KHFDAISSLSMSEDQNLLYSASWDK-----------------  242 (474)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg-----------------  242 (474)
                      .............+.....  ......+......+.  +.......+++.+++.+|+.++.++                 
T Consensus       204 W~~~~~~~~~~~~~~~~~~--~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESM--KRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHH--HHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEeccCCCCcccccccccc--ccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            6554322110000000000  000000000000000  2233334678889888999887664                 


Q ss_pred             --cEEEEEcCCcceeeeeeecCc---------ceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee----
Q 047728          243 --TFKVWRTSDYKCLESVIAHDD---------AVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ----  303 (474)
Q Consensus       243 --~i~iwd~~~~~~~~~~~~~~~---------~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----  303 (474)
                        .|..+|..+++.+..+.....         ....+....+|    .++.++.+|.|+++|.++++.........    
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence              599999999999887764211         11222222244    68889999999999988765422111000    


Q ss_pred             -eeecccccE------------------------EEEEEcCCCCEEEEEcC-----------------------------
Q 047728          304 -TLLKQECAV------------------------TALAISPDAAIVYCGSS-----------------------------  329 (474)
Q Consensus       304 -~~~~~~~~v------------------------~~l~~~~~~~~l~~~~~-----------------------------  329 (474)
                       .......++                        ..++++|+..++++...                             
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence             000000111                        15788998888887543                             


Q ss_pred             --------------CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec-CCc
Q 047728          330 --------------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT-GHS  394 (474)
Q Consensus       330 --------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~  394 (474)
                                    .|.|..||+.+++..-....+....-..+...+.+++.++.||.+++||..+++.  +..+. ++.
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~--lw~~~~~~~  519 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK--LWEAPTGTG  519 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE--EEEEECSSC
T ss_pred             cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce--eeeeeCCCC
Confidence                          2779999999887665444333222344667888999999999999999999984  34443 232


Q ss_pred             cceEEEEEeeCCccccccceEEEEEecC----------------CCcEEEEEccC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSL----------------DKSVKMWRVSE  433 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~----------------Dg~i~vw~~~~  433 (474)
                      ....-+.+..+++.       +++..+.                .+.+.+|.+..
T Consensus       520 ~~~~p~~y~~~G~~-------~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQ-------YVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             CCSCCEEEEETTEE-------EEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             cccCCEEEEeCCEE-------EEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            23344566777763       4444322                46888888874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=1.6e-08  Score=94.51  Aligned_cols=264  Identities=11%  Similarity=0.014  Sum_probs=159.7

Q ss_pred             CcEEEEEEc--CCEEEEee--CCCcEEEEeC-Cccccc-------cccCccCEEEEEec-CCEEEEEeC------CCeEE
Q 047728          111 GHIYSLAAA--GDLLYTGS--DSKNIRVWKN-QREFSG-------FKSNSGLVKAIVIS-NEKIFSGHQ------DGKIR  171 (474)
Q Consensus       111 ~~i~~~~~~--~~~l~tgs--~dg~v~vwd~-~~~~~~-------~~~h~~~V~~i~~~-~~~l~s~~~------dg~i~  171 (474)
                      .....++++  |+++++..  .++.++||.. ...+..       ...|-..+..++++ .+.|+....      ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            567777765  77888753  2343555542 222221       12355789999998 355665543      57899


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-E---CCCcEEEE
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-S---WDKTFKVW  247 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s---~dg~i~iw  247 (474)
                      +||+.+++..........                          ...+...+..+++.+++..++.+ .   .++.|.+|
T Consensus        97 ~~d~~tg~~~~~~~~~~~--------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPP--------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EEETTTTEEEEEEECCTT--------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EEECCCCeEEEEEECChh--------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence            999987764332221100                          00133456899999865555444 4   57899999


Q ss_pred             EcCCcceeeeeeecCccee-EEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          248 RTSDYKCLESVIAHDDAVN-SIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       248 d~~~~~~~~~~~~~~~~v~-~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      |+.+++....+..|..... ...+..++ .+.+...++.++.|.                    ..+..++|+|+++.|+
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLY  210 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEE
T ss_pred             ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEE
Confidence            9998887666644422111 13334456 555566777766552                    1367799999999888


Q ss_pred             EEcCCC-cEEEeecCccc-------c-cce-eeeecc--eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC
Q 047728          326 CGSSDG-LVNFWERELNL-------S-HGG-VLRGHK--LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH  393 (474)
Q Consensus       326 ~~~~dg-~i~v~d~~~~~-------~-~~~-~~~~~~--~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h  393 (474)
                      ++..++ .+..++.....       . ... ...++.  ..-++++++|.++++...++.|.+||..+++...+... .+
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~  289 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EK  289 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GG
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-Cc
Confidence            887766 45555432100       0 000 111222  23478888899999999999999999855553222221 23


Q ss_pred             ccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      ...+.+++|.+++.        ++++.+..+.+.+|
T Consensus       290 ~~~p~~va~~~~g~--------l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          290 LSWTDSFNFGSDGY--------LYFDCNQLHHSAPL  317 (343)
T ss_dssp             GSCEEEEEECTTSC--------EEEEECCGGGSGGG
T ss_pred             eecCCeeEECCCCc--------EEEEeCcccccccc
Confidence            45689999999887        67776655555443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=1.1e-08  Score=94.02  Aligned_cols=221  Identities=11%  Similarity=0.114  Sum_probs=134.3

Q ss_pred             CccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          147 NSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       147 h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      .........|+  ++ .+++...++.|..|+.. ++..                                 .+..+...+
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---------------------------------~~~~~~~~~   88 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---------------------------------VLLDATAFT   88 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---------------------------------EEEESCSCE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---------------------------------EEeCCCCcc
Confidence            33445667776  45 56777788999999873 3211                                 112245568


Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec----CcceeEEEecCCCeEEE-----eeC-------------
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH----DDAVNSIVAGFDGLVFT-----GSA-------------  281 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~~~l~~-----~~~-------------  281 (474)
                      ..++++++++++++...++.|.+|+.. ++........    ...++++++.++|.+..     |..             
T Consensus        89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~  167 (305)
T 3dr2_A           89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA  167 (305)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred             ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence            899999999866665556789999975 5432222111    23467899999994444     332             


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC------CcEEEeecCccccc-ceeee---ec
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD------GLVNFWERELNLSH-GGVLR---GH  351 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~-~~~~~---~~  351 (474)
                      .+.|..||...+.. .      ... .......++|+|+++.|+++...      +.|.+|++...... ...+.   ..
T Consensus       168 ~~~v~~~d~~~g~~-~------~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          168 HHSVYRLPPDGSPL-Q------RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             CEEEEEECSSSCCC-E------EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             CCeEEEEcCCCCcE-E------EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence            24566666543321 1      111 23456789999999988877665      68999998654310 01110   01


Q ss_pred             ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728          352 KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK  424 (474)
Q Consensus       352 ~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg  424 (474)
                      ...-+++.++|++. ++..+ .|.+|+.....   +..+.... .+.+++|.++++        .|+.++.++
T Consensus       240 ~pdgi~~d~~G~lw-v~~~~-gv~~~~~~g~~---~~~~~~~~-~~~~~~f~~d~~--------~L~it~~~~  298 (305)
T 3dr2_A          240 LPDGFCVDRGGWLW-SSSGT-GVCVFDSDGQL---LGHIPTPG-TASNCTFDQAQQ--------RLFITGGPC  298 (305)
T ss_dssp             CCCSEEECTTSCEE-ECCSS-EEEEECTTSCE---EEEEECSS-CCCEEEECTTSC--------EEEEEETTE
T ss_pred             CCCeEEECCCCCEE-EecCC-cEEEECCCCCE---EEEEECCC-ceeEEEEeCCCC--------EEEEEcCCe
Confidence            11236677788844 44444 49999985432   33444333 588999998877        566666554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.17  E-value=1.8e-09  Score=111.02  Aligned_cols=203  Identities=13%  Similarity=0.043  Sum_probs=127.1

Q ss_pred             ccCCeeEEEecCCCCEEEEEE-----CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC---------
Q 047728          219 HFDAISSLSMSEDQNLLYSAS-----WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG---------  283 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg---------  283 (474)
                      |...+..++|+||+++|+.+.     .+..|++||+.+++.+... .+......++|+ |+ .|+.+..+.         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            556788999999999888433     3357999999999865431 111123577899 88 677776664         


Q ss_pred             ----cEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCCCEEEEEcC----CCcEEEeecCcccccceeeeeccee
Q 047728          284 ----TVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGSS----DGLVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       284 ----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                          .|++|++.+.....  ........ +...+..+.|+|++++|+....    +..|+++|+.++......+..+...
T Consensus       205 ~~~~~v~~~~lgt~~~~~--~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDD--RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             CCCCEEEEEETTSCGGGC--EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             CCCcEEEEEECCCCcccc--eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                38889876543211  11222222 3445788999999998865432    3589999987764222333333333


Q ss_pred             e-EEEEecCCEEEEEe-CC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--cEE
Q 047728          355 I-LCLVTAGNLVFSGS-AD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK--SVK  427 (474)
Q Consensus       355 v-~~~~~~~~~l~sgs-~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--~i~  427 (474)
                      . ..++++++.|+..+ .+   +.|..+|+.++.......+..|...+.  .|++++..       ++++...|+  .|+
T Consensus       283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~-------lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY-------LFAEYMVDATARVE  353 (693)
T ss_dssp             CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE-------EEEEEEETTEEEEE
T ss_pred             eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE-------EEEEEEECCeeEEE
Confidence            2 33677776665444 33   679999998765311234455655555  88998872       344444555  578


Q ss_pred             EEEccCC
Q 047728          428 MWRVSEQ  434 (474)
Q Consensus       428 vw~~~~~  434 (474)
                      +|++..+
T Consensus       354 ~~d~~g~  360 (693)
T 3iuj_A          354 QFDYEGK  360 (693)
T ss_dssp             EECTTSC
T ss_pred             EEECCCC
Confidence            8887643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.16  E-value=1.2e-07  Score=89.47  Aligned_cols=248  Identities=8%  Similarity=-0.003  Sum_probs=152.5

Q ss_pred             ceeeeeeeeecCcEEEEEEcCCEEEEee----------CCCcEEEEeCCc--cccccccC-------ccCEEEEEec--C
Q 047728          100 NVLIGSLVREEGHIYSLAAAGDLLYTGS----------DSKNIRVWKNQR--EFSGFKSN-------SGLVKAIVIS--N  158 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~~~~l~tgs----------~dg~v~vwd~~~--~~~~~~~h-------~~~V~~i~~~--~  158 (474)
                      .+++.++..-..+=..++++|++|+++.          .++.|.+||...  .+..+...       ...-..+.++  +
T Consensus        57 ~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG  136 (373)
T 2mad_H           57 GSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             CeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence            3445555443444445667799888875          367899999642  22222111       1123356665  7


Q ss_pred             CEEEEEeC--CCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CE
Q 047728          159 EKIFSGHQ--DGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NL  234 (474)
Q Consensus       159 ~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~  234 (474)
                      ++|+++..  ++.|.++| .+++.... ...                                 .   .++.+.|++ ..
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---------------------------------~---~~~~~~~~~~~~  179 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---------------------------------P---TCYHIHPGAPST  179 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------------C---ceEEEEeCCCce
Confidence            78888774  57899999 87764322 110                                 0   123444544 45


Q ss_pred             EEEEECCCcEEEEEcCCcceeeeee-----ecCcce-eEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee----
Q 047728          235 LYSASWDKTFKVWRTSDYKCLESVI-----AHDDAV-NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ----  303 (474)
Q Consensus       235 l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----  303 (474)
                      +++.+.||.+.++|. +++.+....     ....++ ....+.+++ .++..+..+.+.+.|+.............    
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence            667778999999999 877663322     111221 223344554 44444478899999986432211000000    


Q ss_pred             --eeecccccEEEEEEcCCCCEEEEEcC----------CCcEEEeecCcccccceeeeecceeeEEEEecCC-EEEEEe-
Q 047728          304 --TLLKQECAVTALAISPDAAIVYCGSS----------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVFSGS-  369 (474)
Q Consensus       304 --~~~~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sgs-  369 (474)
                        ...........++++|+++.+++...          .+.|.++|..+.+....+..++....+.++++|+ +++++. 
T Consensus       259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~  338 (373)
T 2mad_H          259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA  338 (373)
T ss_pred             ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence              00001233455789999998888653          3579999999888776776666677789999999 788877 


Q ss_pred             CCCcEEEEECCCCceE
Q 047728          370 ADMSICIWRRKENEHI  385 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~  385 (474)
                      .++.|.+||..+++..
T Consensus       339 ~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          339 GTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCeEEEEECCCCCEE
Confidence            5899999999998843

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.16  E-value=6e-09  Score=97.28  Aligned_cols=270  Identities=10%  Similarity=0.014  Sum_probs=162.6

Q ss_pred             CcceeeeeeeeecCcEEEEEEcCCEEEEee----------CCCcEEEEeCC--ccccccccC-------ccCEEEEEec-
Q 047728           98 SPNVLIGSLVREEGHIYSLAAAGDLLYTGS----------DSKNIRVWKNQ--REFSGFKSN-------SGLVKAIVIS-  157 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~~~~l~tgs----------~dg~v~vwd~~--~~~~~~~~h-------~~~V~~i~~~-  157 (474)
                      ...+.++++..-..+=..++++|++|+++.          .++.|.+||..  +.+..+...       ...-..+.++ 
T Consensus        67 ~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp  146 (386)
T 3sjl_D           67 EAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  146 (386)
T ss_dssp             TTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence            345556666544444356667788887765          36789999954  333333211       1123345665 


Q ss_pred             -CCEEEEEeC--CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE
Q 047728          158 -NEKIFSGHQ--DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL  234 (474)
Q Consensus       158 -~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  234 (474)
                       +++++++..  ++.|.++|+.+.+.........                                  . ...+....+.
T Consensus       147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------------------------------~-~~~~P~g~~~  191 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------------------------------C-YHIFPTAPDT  191 (386)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----------------------------------E-EEEEEEETTE
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----------------------------------c-ceeecCCCce
Confidence             778887764  6899999999987654332110                                  0 1122224456


Q ss_pred             EEEEECCCcEEEEEcCC-cceeeeeeec----Cccee-EEEe-cCCCeEEEeeCCCcEEEEEcccCCCceeeeee-ee--
Q 047728          235 LYSASWDKTFKVWRTSD-YKCLESVIAH----DDAVN-SIVA-GFDGLVFTGSADGTVKVWRRELQGKGTKHFFS-QT--  304 (474)
Q Consensus       235 l~s~s~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~v~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~--  304 (474)
                      +++.+.||.+.+.++.+ ++.......+    ..++. ...| .++|.++..+.+|.|.+.|+............ ..  
T Consensus       192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~  271 (386)
T 3sjl_D          192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA  271 (386)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccc
Confidence            67777888888888765 4442211111    11221 1344 36776555777899999998644321100000 00  


Q ss_pred             ---eecccccEEEEEEcCCCCEEEEEcC----------CCcEEEeecCcccccceeeeecceeeEEEEecCC-EEEEEe-
Q 047728          305 ---LLKQECAVTALAISPDAAIVYCGSS----------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVFSGS-  369 (474)
Q Consensus       305 ---~~~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sgs-  369 (474)
                         ..-.......++++++++.+++...          .+.|.++|+.+.+.+..+..++...-+.++++++ +|++.. 
T Consensus       272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred             cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence               0001223345778999998888643          2579999999999888888888777899999986 666654 


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      .++.|.++|..+++.+......+|.   +.|.+++|
T Consensus       352 ~~~~VsViD~~t~k~~~~i~~~~~p---~~l~~s~d  384 (386)
T 3sjl_D          352 GDKTLYIHDAESGEELRSVNQLGHG---PQVITTAD  384 (386)
T ss_dssp             TTTEEEEEETTTCCEEEEECCCCSS---CCEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCC---ceeEECCc
Confidence            5899999999999854333333333   34455554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.15  E-value=6.6e-10  Score=103.19  Aligned_cols=254  Identities=15%  Similarity=0.133  Sum_probs=152.9

Q ss_pred             EEEc-CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCcc
Q 047728          116 LAAA-GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTF  192 (474)
Q Consensus       116 ~~~~-~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  192 (474)
                      ...+ +..|+.++.++.|..||.. +....+......+.++... ++.|+.++.+  |..+|. +++.......      
T Consensus        25 ~~~d~~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~------   95 (330)
T 3hxj_A           25 PILAKNGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT------   95 (330)
T ss_dssp             CEECTTSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC------
T ss_pred             ceEccCCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC------
Confidence            3443 5567788888888888822 2233333344456677776 6677777666  777775 4333221110      


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF  272 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  272 (474)
                                                .........+.  +..|+.++.++.|..+|.. ++...........+.++...+
T Consensus        96 --------------------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~  146 (330)
T 3hxj_A           96 --------------------------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE  146 (330)
T ss_dssp             -------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred             --------------------------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC
Confidence                                      01111122222  5578888889999999988 777776666666677777877


Q ss_pred             CCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc
Q 047728          273 DGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK  352 (474)
Q Consensus       273 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  352 (474)
                      ++.++.++.++.|..+|.. +..      ..........+.++.+.+++.+++ ++  +.|..|| .++....... ...
T Consensus       147 ~g~l~vgt~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~-~~~  214 (330)
T 3hxj_A          147 DGTIYVGSNDNYLYAINPD-GTE------KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY-AGY  214 (330)
T ss_dssp             TSCEEEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-CSS
T ss_pred             CCEEEEEcCCCEEEEECCC-CCE------eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-cCC
Confidence            8888888989999999976 332      112222344566677777777555 44  7899999 4443332221 122


Q ss_pred             eeeEEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          353 LAILCLVTAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       353 ~~v~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      ..+.++..+. ..|..++.++.|..+|.....   +..+......+..+.+.+++.         |+.++.+|.|..++.
T Consensus       215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~---~~~~~~~~~~~~~~~~~~~g~---------l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYVTSLDGHLYAINPDGTE---KWRFKTGKRIESSPVIGNTDT---------IYFGSYDGHLYAINP  282 (330)
T ss_dssp             CCCSCCEECTTSCEEEEETTTEEEEECTTSCE---EEEEECSSCCCSCCEECTTSC---------EEEECTTCEEEEECT
T ss_pred             cceeceEECCCCeEEEEcCCCeEEEECCCCCE---eEEeeCCCCccccceEcCCCe---------EEEecCCCCEEEECC
Confidence            2333333332 266777778889888754332   233333333444555655554         777788888988885

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=5.9e-09  Score=107.11  Aligned_cols=239  Identities=12%  Similarity=0.082  Sum_probs=146.0

Q ss_pred             CccCEEEEEec--CCEEEE-----EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          147 NSGLVKAIVIS--NEKIFS-----GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      |...+..+.|+  +++|+-     |+.+..|++||+++++..... +                                +
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~--------------------------------~  173 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-L--------------------------------K  173 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-E--------------------------------E
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-c--------------------------------C
Confidence            55678888898  556663     223357999999998743210 0                                1


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCc-------------EEEEEcCCcce----eeeeee-cCcceeEEEecCCC-eE-EEe
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKT-------------FKVWRTSDYKC----LESVIA-HDDAVNSIVAGFDG-LV-FTG  279 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~-------------i~iwd~~~~~~----~~~~~~-~~~~v~~v~~~~~~-~l-~~~  279 (474)
                      ......++|+ |++.|+.++.+..             |++|++.+...    +..... |...+..+.++||+ .| ++.
T Consensus       174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            1112467899 9999998887743             99999987643    222223 34456788999999 44 333


Q ss_pred             eC---CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCC---CcEEEeecCcccc-cceeeeec
Q 047728          280 SA---DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSD---GLVNFWERELNLS-HGGVLRGH  351 (474)
Q Consensus       280 ~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d---g~i~v~d~~~~~~-~~~~~~~~  351 (474)
                      ..   ...|.++|+......     ...+..+....... +++++..|+.. ..+   +.|..+|+.+... ....+..|
T Consensus       253 ~~~~~~~~i~~~d~~~~~~~-----~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~  326 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENAP-----LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE  326 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTCC-----CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred             ccCCCCcEEEEEECCCCCCc-----eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence            32   357999998754321     12233334444444 56666655544 333   5788999887543 11233444


Q ss_pred             ceeeEEEEecCCEEEEEeCCC---cEEEEECCCCceEEEEeec-CCccceEEEEEeeCCccccccceEEEEEecC---CC
Q 047728          352 KLAILCLVTAGNLVFSGSADM---SICIWRRKENEHICLSMLT-GHSGPVKCLAVEKDDESLSREKRWILYSGSL---DK  424 (474)
Q Consensus       352 ~~~v~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~---Dg  424 (474)
                      ...++.++++++.|+....++   .|++||+.++..   ..+. ...+.+..+.+++++..       ++++.+.   -+
T Consensus       327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~---~~l~~p~~~~~~~~~~~~d~~~-------l~~~~ss~~tP~  396 (693)
T 3iuj_A          327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRV---REVALPGLGSVSGFNGKHDDPA-------LYFGFENYAQPP  396 (693)
T ss_dssp             CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEE---EEECCSSSSEEEECCCCTTCSC-------EEEEEECSSSCC
T ss_pred             CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCee---EEeecCCCceEEeeecCCCCCE-------EEEEecCCCCCC
Confidence            444448899998887766544   688999886542   2222 24456777778777763       3333332   27


Q ss_pred             cEEEEEccCCC
Q 047728          425 SVKMWRVSEQA  435 (474)
Q Consensus       425 ~i~vw~~~~~~  435 (474)
                      .|..||+.+++
T Consensus       397 ~l~~~d~~~g~  407 (693)
T 3iuj_A          397 TLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECTTTCC
T ss_pred             EEEEEECCCCe
Confidence            88899887653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.14  E-value=4.9e-08  Score=90.46  Aligned_cols=219  Identities=11%  Similarity=0.025  Sum_probs=129.2

Q ss_pred             EEEc-CCEEEEeeCCCcEEEEeCCcc-ccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCcc
Q 047728          116 LAAA-GDLLYTGSDSKNIRVWKNQRE-FSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTF  192 (474)
Q Consensus       116 ~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  192 (474)
                      +.++ +.+++++..++.|.+||.... ...+. ....+.+++++ +..++.+..++ |.+||..+++.........    
T Consensus        56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~~~~~~~~----  129 (326)
T 2ghs_A           56 FDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELES----  129 (326)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSST----
T ss_pred             EeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcEEEEeeCCC----
Confidence            3444 457777777889999986532 22222 34678999887 44555555554 8999987765321110000    


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC------CCcEEEEEcCCcceeeeeeecCccee
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW------DKTFKVWRTSDYKCLESVIAHDDAVN  266 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~v~  266 (474)
                                              ......+.+++++|+|+++++...      .+.|..++  +++.. .+..+.....
T Consensus       130 ------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~  182 (326)
T 2ghs_A          130 ------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPN  182 (326)
T ss_dssp             ------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEE
T ss_pred             ------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccC
Confidence                                    001235789999999987665442      24566666  44433 3333344567


Q ss_pred             EEEecCCC-eE-EEeeCCCcEEEEEcc--cC-CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728          267 SIVAGFDG-LV-FTGSADGTVKVWRRE--LQ-GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       267 ~v~~~~~~-~l-~~~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                      .++|++++ .+ ++.+.++.|.+||+.  .+ ...... ...........+..+++++++++.++...++.|.+||.. +
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~-~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g  260 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE-VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G  260 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE-EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce-EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C
Confidence            89999999 44 445567899999985  22 111111 111122234557889999999988777677889999984 3


Q ss_pred             cccceeeeecceee--EEEE-ecCCEEEEEeC
Q 047728          342 LSHGGVLRGHKLAI--LCLV-TAGNLVFSGSA  370 (474)
Q Consensus       342 ~~~~~~~~~~~~~v--~~~~-~~~~~l~sgs~  370 (474)
                      ... ..+..+...+  +++. ++++.|+.++.
T Consensus       261 ~~~-~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          261 NHI-ARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CEE-EEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CEE-EEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            332 2222233234  4444 55566655543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.11  E-value=5.6e-09  Score=97.57  Aligned_cols=255  Identities=6%  Similarity=-0.035  Sum_probs=155.9

Q ss_pred             cEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCCCcceeeeecccCccceee
Q 047728          131 NIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSKDASIHKRVGTLPTFKDFI  196 (474)
Q Consensus       131 ~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  196 (474)
                      +|.+.|..  +.+..+.....+  .+.++  +++++++.          .++.|.+||..+.+......+...+.     
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-----  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-----  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-----
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-----
Confidence            67788843  455555444445  57776  66777775          47889999999988765443320000     


Q ss_pred             eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEE--EEcCCcceeeeeeecCcceeEEEecC
Q 047728          197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKV--WRTSDYKCLESVIAHDDAVNSIVAGF  272 (474)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~v~~~~  272 (474)
                                        ..  .......++++||+++++++..  +..|.+  +|+.+   +..+... +.   +.+.|
T Consensus       120 ------------------~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p  172 (368)
T 1mda_H          120 ------------------FS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHP  172 (368)
T ss_dssp             ------------------CC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEE
T ss_pred             ------------------cc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEcc
Confidence                              00  0123457899999999999875  467888  88876   4444321 11   12334


Q ss_pred             CC--eEEEeeCCCcEEEEEccc----CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-cc
Q 047728          273 DG--LVFTGSADGTVKVWRREL----QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-HG  345 (474)
Q Consensus       273 ~~--~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~  345 (474)
                      ++  .+++.+.||.+.+.|+..    ..+.... ..........+.   . .+++..++..+. +.+.+.|...... ..
T Consensus       173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~-~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~  246 (368)
T 1mda_H          173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ-CTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMK  246 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCC-SCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEE
T ss_pred             CCCeEEEEEcCCCCEEEEECccccccCCeEEEE-eeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEE
Confidence            44  666777889988888865    1110000 000111122333   3 566666665666 8999999864321 10


Q ss_pred             e-e-----------eeecceeeEEEEecCCEEEEEeC---------CCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          346 G-V-----------LRGHKLAILCLVTAGNLVFSGSA---------DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       346 ~-~-----------~~~~~~~v~~~~~~~~~l~sgs~---------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      . +           ........+.++++++.++.+..         ++.+.++|+.+.+.  +..+.... ...+++|+|
T Consensus       247 ~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg~-~p~gi~~s~  323 (368)
T 1mda_H          247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISNGH-DSDAIIAAQ  323 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEEEE-EECEEEECC
T ss_pred             EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEECCC-CcceEEECC
Confidence            1 0           11222233679999998887643         23566999999874  44444332 588999999


Q ss_pred             CCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728          405 DDESLSREKRWILYSGS-LDKSVKMWRVSEQA  435 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~  435 (474)
                      |++.       ++++.. .++.|.++|+.+.+
T Consensus       324 Dg~~-------l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          324 DGAS-------DNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SSSC-------EEEEEETTTTEEEEEESSSCE
T ss_pred             CCCE-------EEEEccCCCCeEEEEECCCCc
Confidence            9874       566766 69999999999873

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=5.2e-11  Score=112.58  Aligned_cols=185  Identities=11%  Similarity=0.107  Sum_probs=103.6

Q ss_pred             EecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE
Q 047728          155 VISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL  234 (474)
Q Consensus       155 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  234 (474)
                      +..++.+++++.||.|+.||..+++.......                                  ..+.+..+..++..
T Consensus         6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------------~~~~s~p~~~~g~~   51 (369)
T 2hz6_A            6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------------DPVLQVPTHVEEPA   51 (369)
T ss_dssp             --CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------------CCSCCCC-----CC
T ss_pred             eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------------CCceecceEcCCCE
Confidence            34588999999999999999999887654332                                  12333334456777


Q ss_pred             EEEEECCCcEEEEEcCCcceeeeeeecCc-ceeE-EEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728          235 LYSASWDKTFKVWRTSDYKCLESVIAHDD-AVNS-IVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV  312 (474)
Q Consensus       235 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  312 (474)
                      +++++.|+.|+.||.++++.+..+..+.. .+.+ ..+..++.+++++.++.|+.||.++++....      ...+.   
T Consensus        52 ~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~------~~~~~---  122 (369)
T 2hz6_A           52 FLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT------LSSAF---  122 (369)
T ss_dssp             EEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------
T ss_pred             EEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEE------ecCCC---
Confidence            88788999999999999988766543321 1111 1112345788899999999999987654211      11111   


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC---CEEEEEeCCCcEEEEECCCCce
Q 047728          313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG---NLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                       ...++|++..+++++.|+.|+.||.+++......... ......+..+.   ..+++++.||.|+.||..+++.
T Consensus       123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             -----------EEEEEEEEEEECCCSSSSSCCCEEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             -cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence             2345668889999999999999999988655433211 11111222221   5678889999999999998874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.00  E-value=2.5e-08  Score=94.75  Aligned_cols=250  Identities=12%  Similarity=0.040  Sum_probs=147.9

Q ss_pred             CCEEEEEeCC-----CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728          158 NEKIFSGHQD-----GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ  232 (474)
Q Consensus       158 ~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  232 (474)
                      ++.+++....     +.|.++|..+.+.......+                                ..+  .++++||+
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--------------------------------~~P--gia~SpDg  129 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--------------------------------FLP--HPVAAEDG  129 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--------------------------------SSC--EEEECTTS
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--------------------------------CCC--ceEECCCC
Confidence            5556555542     68999999988765444332                                123  79999999


Q ss_pred             CEEEEEE----------CCCcEEEEEcCCcceeeeeeec-------CcceeEEEecCCC-eEEEeeC--CCcEEEEEccc
Q 047728          233 NLLYSAS----------WDKTFKVWRTSDYKCLESVIAH-------DDAVNSIVAGFDG-LVFTGSA--DGTVKVWRREL  292 (474)
Q Consensus       233 ~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~~~~~-~l~~~~~--dg~i~iwd~~~  292 (474)
                      ++|+++.          .++.|.++|..+++.+..+...       ......+.++||+ +++++..  ++.|.+.|+..
T Consensus       130 k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          130 SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence            9998886          3678999999999998887642       2345678999999 6666653  67899999886


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccce---eeeecc---eeeEEEEecCCEE
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGG---VLRGHK---LAILCLVTAGNLV  365 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~---~~v~~~~~~~~~l  365 (474)
                      .+..      ..+.....    ....|+ ...+++.+.||.+.+.+...+.....   .+....   .....+.+++..+
T Consensus       210 ~kvv------~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~  279 (426)
T 3c75_H          210 KTFD------RMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL  279 (426)
T ss_dssp             TEEE------EEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred             CeEE------EEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence            5431      11111110    122232 24444455566666666533322110   000000   1123456777777


Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeecC----------CccceEEEEEeeCCccccccceEEEEEec----------CCCc
Q 047728          366 FSGSADMSICIWRRKENEHICLSMLTG----------HSGPVKCLAVEKDDESLSREKRWILYSGS----------LDKS  425 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s----------~Dg~  425 (474)
                      +..+..+.|.+.|........+..+.-          .......+++++++.        .++...          .++.
T Consensus       280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~--------rlyVa~~~~~~gthk~~s~~  351 (426)
T 3c75_H          280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD--------RIYLLVDQRDEWKHKAASRF  351 (426)
T ss_dssp             EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT--------EEEEEEEECCTTCTTSCEEE
T ss_pred             EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC--------EEEEEecccccccccCCCCE
Confidence            777788999999997654322211110          011222368999977        344432          1357


Q ss_pred             EEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc-eee
Q 047728          426 VKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR-ICQ  471 (474)
Q Consensus       426 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~-~l~  471 (474)
                      |.+.|+.+.+.       ...+..- ....++    +|+|||+ ++.
T Consensus       352 VsVID~~T~kv-------v~~I~vg-~~P~gi----a~spDg~~~ly  386 (426)
T 3c75_H          352 VVVLNAETGER-------INKIELG-HEIDSI----NVSQDAEPLLY  386 (426)
T ss_dssp             EEEEETTTCCE-------EEEEEEE-EEECEE----EECCSSSCEEE
T ss_pred             EEEEECCCCeE-------EEEEECC-CCcCeE----EEccCCCEEEE
Confidence            99999988732       2333211 124444    8899998 554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.99  E-value=2.1e-10  Score=108.33  Aligned_cols=184  Identities=14%  Similarity=0.111  Sum_probs=100.9

Q ss_pred             CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE  309 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (474)
                      ++..+++++.|+.|+.||..+++.+..+..  +.+.+..+..++ .+++++.||.|+.||.++++...............
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999999988876  455555555566 77777899999999987655422111100000001


Q ss_pred             ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 047728          310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM  389 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  389 (474)
                      .++    +. .+..+++++.++.|+.||.++++.........   ...+++++..+++++.|+.|+.||.++++......
T Consensus        86 sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           86 SPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             CSC----C------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             Cce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            111    11 34567778889999999999887654332221   23445688899999999999999999887432212


Q ss_pred             ecCCccceEEEEEeeCC---ccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          390 LTGHSGPVKCLAVEKDD---ESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       390 ~~~h~~~v~~l~~~~~~---~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      ...    ....++..+.   .        .++.++.||.|..||..+++.
T Consensus       158 ~~~----~~~~~~~~~~~~~~--------~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          158 YFD----YAASLPEDDVDYKM--------SHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEE----ECCBCCCCCTTCCC--------CEEEEETSCEEEEECTTTCCE
T ss_pred             ccc----ccCccccCCccccc--------eEEEECCCCEEEEEECCCCcE
Confidence            111    1122233321   2        466788899999999988753

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=8.8e-09  Score=96.30  Aligned_cols=233  Identities=13%  Similarity=0.124  Sum_probs=135.5

Q ss_pred             CCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeee-------eecCcceeEEEecCCCeEEEeeC------CCcE
Q 047728          221 DAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESV-------IAHDDAVNSIVAGFDGLVFTGSA------DGTV  285 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~v~~~~~~~l~~~~~------dg~i  285 (474)
                      ..+..++++++++++++..  .++.++||.+.+++.. .+       ..+-..+..+++.+++.|+....      +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5789999999999888864  2342455554455432 22       12446789999999995554442      5789


Q ss_pred             EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-c---CCCcEEEeecCcccccceeeeec----------
Q 047728          286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-S---SDGLVNFWERELNLSHGGVLRGH----------  351 (474)
Q Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---~dg~i~v~d~~~~~~~~~~~~~~----------  351 (474)
                      .+||+.++..............+...+..+++++++..++++ .   .++.|.+||+.++... ....+|          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-RVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-EECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-EEecCCCcccccccce
Confidence            999987543111110000111223456899999865555444 4   5788999998755321 111110          


Q ss_pred             ---------------------ceeeEEEEecCCEEEEEeCCC-cEEEEECC---CCce---EE--EEeecCCccceEEEE
Q 047728          352 ---------------------KLAILCLVTAGNLVFSGSADM-SICIWRRK---ENEH---IC--LSMLTGHSGPVKCLA  401 (474)
Q Consensus       352 ---------------------~~~v~~~~~~~~~l~sgs~dg-~i~iwd~~---~~~~---~~--~~~~~~h~~~v~~l~  401 (474)
                                           ...-++++++++.|+.+..++ .|..++..   .+..   ..  .....++.+....++
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia  254 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS  254 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence                                 112367788898888887666 44444431   1100   00  001113344567899


Q ss_pred             EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       402 ~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      +++++.        ++++...++.|.+|+..+++..     ..... .+...+.++    +|++||++.++.
T Consensus       255 ~d~~G~--------l~va~~~~~~V~~~d~~~G~~~-----~~~~~-~~~~~p~~v----a~~~~g~l~v~~  308 (343)
T 2qe8_A          255 IDKDHN--------IYVGDLAHSAIGVITSADRAYK-----LLVTD-EKLSWTDSF----NFGSDGYLYFDC  308 (343)
T ss_dssp             ECTTCC--------EEEEEGGGTEEEEEETTTTEEE-----EEEEC-GGGSCEEEE----EECTTSCEEEEE
T ss_pred             ECCCCC--------EEEEccCCCeEEEEECCCCCEE-----EEEEC-CceecCCee----EECCCCcEEEEe
Confidence            999988        8888888999999998444210     10100 112234555    667788887764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=1.8e-07  Score=87.94  Aligned_cols=192  Identities=11%  Similarity=0.116  Sum_probs=122.1

Q ss_pred             CCCCEEEE-EECCCcEEEEEcCCc----ceeeeee------e-cCcceeEEEecCCCeEEEeeCC------CcEEEEEcc
Q 047728          230 EDQNLLYS-ASWDKTFKVWRTSDY----KCLESVI------A-HDDAVNSIVAGFDGLVFTGSAD------GTVKVWRRE  291 (474)
Q Consensus       230 ~~~~~l~s-~s~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~v~~~~~~~l~~~~~d------g~i~iwd~~  291 (474)
                      .+.++|+. +..+++|.++|+.+.    +...++.      . .......+.+.|++.++++..+      |.|.++|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            67777765 457789999999755    5555552      1 1124456788899955555554      789999987


Q ss_pred             cCCCceeeeeeeeeec--c-cccEEEEEEcCCCCEEEEEc-------------------CCCcEEEeecCcccccceeee
Q 047728          292 LQGKGTKHFFSQTLLK--Q-ECAVTALAISPDAAIVYCGS-------------------SDGLVNFWERELNLSHGGVLR  349 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~--~-~~~v~~l~~~~~~~~l~~~~-------------------~dg~i~v~d~~~~~~~~~~~~  349 (474)
                      +...      ......  . ...-..+.|+|+++.+++..                   .+.+|.+||+.+.+....+..
T Consensus       173 T~~v------~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          173 SFEP------LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             TCCE------EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             CCeE------EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            5543      222221  1 12234588899999888874                   368999999987654443333


Q ss_pred             ecc--ee-eE--EEEecCCEEEEEeC------CCcEEEEECCCCceEEEEee--cCC----------------ccceEEE
Q 047728          350 GHK--LA-IL--CLVTAGNLVFSGSA------DMSICIWRRKENEHICLSML--TGH----------------SGPVKCL  400 (474)
Q Consensus       350 ~~~--~~-v~--~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~--~~h----------------~~~v~~l  400 (474)
                      +..  .+ -+  .+++++++++++++      +++|.+|..+.++......+  ...                ......|
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            211  11 12  23778998888774      56888877765543322221  110                1347889


Q ss_pred             EEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .+++|++.       +.++.-..+.|.+||+...
T Consensus       327 ~lS~DGrf-------LYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          327 DISLDDKF-------LYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EECTTSCE-------EEEEETTTTEEEEEECSST
T ss_pred             EECCCCCE-------EEEEeCCCCEEEEEEecCC
Confidence            99999983       3444455789999999744

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.88  E-value=2.7e-06  Score=76.16  Aligned_cols=220  Identities=10%  Similarity=0.005  Sum_probs=129.0

Q ss_pred             CeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728          222 AISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      .+..++|++++..|+.+. .++.|..++.........+.........+++.+++  .+++-...+.|.++++.....  .
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~  114 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--R  114 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--E
Confidence            467999999766666554 56889999987654433332222467899999864  444555678899998863221  1


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEEe-CCC
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGS-ADM  372 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs-~dg  372 (474)
                          ............++++|++..|+.+..   .+.|..++++..... ....  .....-++++++++.|+.+. ..+
T Consensus       115 ----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~~~~  189 (267)
T 1npe_A          115 ----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (267)
T ss_dssp             ----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence                111112246789999997666665554   368888887643221 1111  12233467777776665554 568


Q ss_pred             cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC-C
Q 047728          373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH-G  451 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~  451 (474)
                      .|.++|.......  ...... .....+++. .+.        ++++....+.|.+++..+++       ....+... .
T Consensus       190 ~I~~~~~~g~~~~--~~~~~~-~~P~gi~~d-~~~--------lyva~~~~~~v~~~d~~~g~-------~~~~i~~g~~  250 (267)
T 1npe_A          190 RAECLNPAQPGRR--KVLEGL-QYPFAVTSY-GKN--------LYYTDWKTNSVIAMDLAISK-------EMDTFHPHKQ  250 (267)
T ss_dssp             EEEEEETTEEEEE--EEEECC-CSEEEEEEE-TTE--------EEEEETTTTEEEEEETTTTE-------EEEEECCSSC
T ss_pred             EEEEEecCCCceE--EEecCC-CCceEEEEe-CCE--------EEEEECCCCeEEEEeCCCCC-------ceEEEccccc
Confidence            9999999764422  222222 234566654 333        55566667899999987763       22333222 2


Q ss_pred             CCCCccccCCCCCcCC
Q 047728          452 VAPNSLPYAPSFSSQG  467 (474)
Q Consensus       452 ~~v~~l~~~p~~s~Dg  467 (474)
                      ..+..+++.|.-.|++
T Consensus       251 ~~p~gi~~~~~~~~~~  266 (267)
T 1npe_A          251 TRLYGITIALSQCPQG  266 (267)
T ss_dssp             CCCCCEEEECSCC---
T ss_pred             cccceeeecCccCCCC
Confidence            2366776665544543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.86  E-value=1.7e-05  Score=82.87  Aligned_cols=284  Identities=14%  Similarity=0.178  Sum_probs=169.7

Q ss_pred             EEEEEEc-CCEEEEeeCCCcEEEEeCCc-ccccc--ccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728          113 IYSLAAA-GDLLYTGSDSKNIRVWKNQR-EFSGF--KSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       113 i~~~~~~-~~~l~tgs~dg~v~vwd~~~-~~~~~--~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  187 (474)
                      |.++..+ ...|..|+.++-|..|+... .+..+  ..+...|.++..+ .+.|..|+.++-|.+|+..+++........
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~  254 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSP  254 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCT
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCC
Confidence            7777765 44566677655588888432 22222  1234568888876 566777775544888987765432111000


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-------e
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-------A  260 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~  260 (474)
                      ..+                       .  .-....|.++...+++.+. .|+.+ -|.+||..+++......       .
T Consensus       255 ~~~-----------------------~--~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l  307 (795)
T 4a2l_A          255 SNP-----------------------K--SISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSL  307 (795)
T ss_dssp             TCT-----------------------T--SCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSC
T ss_pred             CCc-----------------------c--ccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCC
Confidence            000                       0  0034568999988877654 45555 58999987765433221       1


Q ss_pred             cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728          261 HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       261 ~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      ....|.++...++|.|..|+.++-|..|+.....-...........-....|.++..++++.+.+ |+.++-|..||..+
T Consensus       308 ~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          308 SQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTT
T ss_pred             CCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCC
Confidence            23579999999999888899988999998764321100000000011245699999998887554 77777799999875


Q ss_pred             ccccceeee-------ecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeec--CCccceEEEEEeeCCccc
Q 047728          341 NLSHGGVLR-------GHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLT--GHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       341 ~~~~~~~~~-------~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~  409 (474)
                      +........       -....|.++..  ++++|..|+.++-|.+||..+++........  .....|.++...+++.  
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--  464 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN--  464 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC--
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC--
Confidence            532111100       01234566655  4555788888888999999887633211100  2345789998888876  


Q ss_pred             cccceEEEEEecCCCcEEEEEccCC
Q 047728          410 SREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                            +.+ |+.+ -|.+|+..++
T Consensus       465 ------lwi-gt~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          465 ------LWL-GTLS-ALVRFNPEQR  481 (795)
T ss_dssp             ------EEE-EESS-CEEEEETTTT
T ss_pred             ------EEE-EecC-ceeEEeCCCC
Confidence                  444 4444 4888887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=1.3e-07  Score=92.19  Aligned_cols=253  Identities=8%  Similarity=0.046  Sum_probs=160.4

Q ss_pred             EEEEe-----cCCEEEEEeC-CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          152 KAIVI-----SNEKIFSGHQ-DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       152 ~~i~~-----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      ..+.+     ++++++.... ++.|.+.|+++.+......+.                               .......
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-------------------------------~g~~phg  138 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-------------------------------NAKGIHG  138 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-------------------------------SCCSEEE
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-------------------------------CCCCCcc
Confidence            45555     3566666554 557999999988754422211                               2234667


Q ss_pred             EEe-c-CCCCEEEEEE------------------CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC-
Q 047728          226 LSM-S-EDQNLLYSAS------------------WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG-  283 (474)
Q Consensus       226 l~~-~-~~~~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg-  283 (474)
                      +++ . |+++++++++                  .++.+.++|..+.+.+.++.... ....++++|++ ++++.+.+. 
T Consensus       139 ~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se  217 (595)
T 1fwx_A          139 LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE  217 (595)
T ss_dssp             EEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT
T ss_pred             eeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcc
Confidence            777 4 8899998885                  34579999999999888887544 45778899999 666666543 


Q ss_pred             --------------cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc--ccc-cce
Q 047728          284 --------------TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL--NLS-HGG  346 (474)
Q Consensus       284 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~--~~~-~~~  346 (474)
                                    .|.++|.....                     .+.++|+....    +.|.+.|.++  +.. ...
T Consensus       218 ~~~~i~~~~~~~~d~v~V~~~~~~~---------------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~  272 (595)
T 1fwx_A          218 KGMTLPEMTAAEMDHIVVFNIAEIE---------------------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRY  272 (595)
T ss_dssp             CCSSHHHHTCCSEEEEEEEEHHHHH---------------------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEE
T ss_pred             cCcchhhccccccceEEEeecccee---------------------EeccCCCeeEE----CcEEEEeCcccCCceeEEE
Confidence                          24444432110                     01223443333    5599999987  433 334


Q ss_pred             eeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCce----------EEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          347 VLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEH----------ICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       347 ~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      +..+.....+.++|||+++++++ .+.+|.++|+.+.+.          .....+. -......++|++++.        
T Consensus       273 Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~--------  343 (595)
T 1fwx_A          273 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGN--------  343 (595)
T ss_dssp             EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSE--------
T ss_pred             EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCe--------
Confidence            44555666789999999877766 678999999986421          1123332 224578899999995        


Q ss_pred             EEEEecCCCcEEEEEccCCC------CCCCCCcccccccCCCCCC-CccccCCCCCcCCceeecc
Q 047728          416 ILYSGSLDKSVKMWRVSEQA------PPLVSTTQQHPLEGHGVAP-NSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~v-~~l~~~p~~s~Dg~~l~~~  473 (474)
                      ..++.-.|+.|.+|++....      ...   .....+..|-.+- ......-+++|||+.|.+.
T Consensus       344 aY~t~~ldsqV~kwdi~~a~~~~~g~~~~---~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          344 AYTSLFLDSQVVKWNIEDAIRAYAGEKVD---PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHTCSCC---CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             EEEEEecCCcEEEEEhhHhhhhhcccccc---eeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            78888899999999998721      110   2222333222110 1222333789999998753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=1e-05  Score=84.49  Aligned_cols=280  Identities=12%  Similarity=0.162  Sum_probs=168.7

Q ss_pred             CcEEEEEEc-CCEEEEeeCCCcEEEEeCCc-ccccccc-------CccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCc
Q 047728          111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQR-EFSGFKS-------NSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDA  180 (474)
Q Consensus       111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~-~~~~~~~-------h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~  180 (474)
                      ..|.++..+ ...|..|+.++-|..|+... .+..+..       ....|.++..+ .+.|..|+.++-|..|+..++..
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence            468888887 44577788777788887432 2222211       24569999887 55788888887799998876543


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-  259 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-  259 (474)
                      .........+                       . ..-....|.++...+++.+|..|+.++-|..||..+++...... 
T Consensus       390 ~~~~~~~~~~-----------------------~-~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          390 TSYTLQEDES-----------------------A-RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             EEECCC------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             EEEecCCCCc-----------------------c-cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            2111000000                       0 00024578999988888757778887779999988766433211 


Q ss_pred             ---ecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee---eecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          260 ---AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT---LLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       260 ---~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                         .....|.++...+++.|..|+. +-|.+||......  . .....   .......|.++..++++.+.+...  +-|
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~--~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl  519 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSF--T-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGL  519 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEE--E-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCE
T ss_pred             CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeE--E-EccccccccccCCceEEEEEECCCCCEEEEeC--Cce
Confidence               1345789999888887777776 4588888753211  0 00000   011235789999999888766544  458


Q ss_pred             EEeecCcccccceee------eecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCC-ccceEEEEEee
Q 047728          334 NFWERELNLSHGGVL------RGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGH-SGPVKCLAVEK  404 (474)
Q Consensus       334 ~v~d~~~~~~~~~~~------~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~~  404 (474)
                      ..||..+...  ...      ......+.++..+  |. |..|+.. -|..||..+.+........+- ...|.++...+
T Consensus       520 ~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~  595 (795)
T 4a2l_A          520 SVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDS  595 (795)
T ss_dssp             EEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECT
T ss_pred             EEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECC
Confidence            8888765432  111      1123356666653  55 4445544 688899877653321111121 34688888888


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ++.        +.+++ .. -|..|+..+.
T Consensus       596 ~g~--------lWi~t-~~-Gl~~~~~~~~  615 (795)
T 4a2l_A          596 FGR--------LWLST-NR-GISCFNPETE  615 (795)
T ss_dssp             TSC--------EEEEE-TT-EEEEEETTTT
T ss_pred             CCC--------EEEEc-CC-ceEEEcCCCC
Confidence            887        44444 44 4667776543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.80  E-value=1.1e-05  Score=72.07  Aligned_cols=217  Identities=6%  Similarity=0.007  Sum_probs=130.2

Q ss_pred             cCEEEEEec--CCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          149 GLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       149 ~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      .....++++  ++.|+.+ ..++.|.+++.+........                                .........
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~--------------------------------~~~~~~p~~   83 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--------------------------------RQDLGSPEG   83 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--------------------------------CTTCCCEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE--------------------------------ECCCCCccE
Confidence            346788886  4555544 45678999998765321100                                001235678


Q ss_pred             EEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCC-CeEEEeeC---CCcEEEEEcccCCCceeee
Q 047728          226 LSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVFTGSA---DGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       226 l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~  300 (474)
                      +++.+++..|+.+. ..+.|.++++..................+++.++ +.|+.+..   .+.|..+++.....  .  
T Consensus        84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~--  159 (267)
T 1npe_A           84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--R--  159 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--E--
T ss_pred             EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--E--
Confidence            99999766666554 5678999998643322222222245789999995 55555543   36788888753221  1  


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWR  378 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd  378 (474)
                        ............+++++++..|+.+ ...+.|.++|....... ...... .....+..++..|+.+. ..+.|..+|
T Consensus       160 --~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          160 --ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             --EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECC-CSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCC-CCceEEEEeCCEEEEEECCCCeEEEEe
Confidence              1111223467899999987666554 45678999998754322 222211 12234455666666665 568999999


Q ss_pred             CCCCceEEEEeecCCc-cceEEEEEeeCCc
Q 047728          379 RKENEHICLSMLTGHS-GPVKCLAVEKDDE  407 (474)
Q Consensus       379 ~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~  407 (474)
                      ..+++.  +..+.... .....+++.|++.
T Consensus       236 ~~~g~~--~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          236 LAISKE--MDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTTEE--EEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCCCc--eEEEccccccccceeeecCccC
Confidence            988773  34443322 2467888888764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.79  E-value=7e-07  Score=90.94  Aligned_cols=273  Identities=9%  Similarity=0.126  Sum_probs=157.2

Q ss_pred             CCEEEEeeCCCcEEEEeC--CccccccccCc----------cC-EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728          120 GDLLYTGSDSKNIRVWKN--QREFSGFKSNS----------GL-VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV  186 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~----------~~-V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  186 (474)
                      +..|++++.++.|..+|.  ++.+-.+....          .. -..+.+.++.|+.++.|+.|..+|..+++.......
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            556666666666766663  22222221110          01 122345678899999999999999999987765543


Q ss_pred             cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC------CCcEEEEEcCCcceeeeeee
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW------DKTFKVWRTSDYKCLESVIA  260 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~  260 (474)
                      ......                       +.....++    +  .+..++++..      ++.|..+|.++++.+..+..
T Consensus       146 ~~~~~~-----------------------~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          146 TDPAKP-----------------------YSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             SCTTSS-----------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCCCCc-----------------------ceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            210000                       00001111    1  1335555543      58999999999999887753


Q ss_pred             cC-------------------------------cceeEEEecCCC-eEEEeeCCC-------------------cEEEEE
Q 047728          261 HD-------------------------------DAVNSIVAGFDG-LVFTGSADG-------------------TVKVWR  289 (474)
Q Consensus       261 ~~-------------------------------~~v~~v~~~~~~-~l~~~~~dg-------------------~i~iwd  289 (474)
                      ..                               .....+++.++. .++.++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            11                               011235677665 777777665                   388888


Q ss_pred             cccCCCceeeeeeeeeeccc-------ccEEEEEEcCCCC---EEEEEcCCCcEEEeecCcccccceeeee---------
Q 047728          290 RELQGKGTKHFFSQTLLKQE-------CAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVLRG---------  350 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~---------  350 (474)
                      .++++......    ...|.       .++....+..+++   .+++++.+|.++++|.++++.+......         
T Consensus       277 ~~tG~~~W~~~----~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          277 PDTGKLAWHYQ----VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             TTTCCEEEEEE----SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             CCCCceeeEee----cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            87665322111    11111       2233233333564   6888999999999999888654211100         


Q ss_pred             ----------------------------cceeeEEEEecCCEEEEE----------------------------------
Q 047728          351 ----------------------------HKLAILCLVTAGNLVFSG----------------------------------  368 (474)
Q Consensus       351 ----------------------------~~~~v~~~~~~~~~l~sg----------------------------------  368 (474)
                                                  +.-...+++++..+++..                                  
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence                                        000114556655555542                                  


Q ss_pred             --eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          369 --SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       369 --s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                        ..+|.|..||..+++..  ..... ..++....+...+.        +++.++.||.|++||..+++.
T Consensus       433 ~~~~~g~l~A~D~~tG~~~--W~~~~-~~~~~~~~~~t~gg--------~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAA--WKVPY-PTHWNGGTLSTAGN--------LVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEE--EEEEE-SSSCCCCEEEETTT--------EEEEECTTSEEEEEETTTCCE
T ss_pred             CCCccceEEEEeCCCCcEE--EEccC-CCCCcCceeEeCCC--------EEEEECCcccchhhhhhcChh
Confidence              13488999999998843  33322 22333344555666        788899999999999998854

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.78  E-value=2.2e-07  Score=86.85  Aligned_cols=231  Identities=11%  Similarity=-0.002  Sum_probs=138.8

Q ss_pred             eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE---------
Q 047728          169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS---------  239 (474)
Q Consensus       169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---------  239 (474)
                      +|.++|.++.+.......+                                ..+  .+.++||+++++++.         
T Consensus        47 ~vsvID~~t~~v~~~i~vG--------------------------------~~P--~i~~spDg~~lyVan~~~~r~~~G   92 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGA--------------------------------FLS--LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             EEEEEETTTTEEEEEEEEC--------------------------------TTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             eEEEEECCCCeEEEEEeCC--------------------------------CCC--ceEECCCCCEEEEEcccccccccC
Confidence            7889999888765443322                                224  699999999999886         


Q ss_pred             -CCCcEEEEEcCCcceeeeeeec-------CcceeEEEecCCC-eEEEeeC--CCcEEE--EEcccCCCceeeeeeeeee
Q 047728          240 -WDKTFKVWRTSDYKCLESVIAH-------DDAVNSIVAGFDG-LVFTGSA--DGTVKV--WRRELQGKGTKHFFSQTLL  306 (474)
Q Consensus       240 -~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~~~~~-~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~  306 (474)
                       .++.|.+||+.+++.+.++...       ......++++||+ +++++..  +..|.+  +|+..    ..     ...
T Consensus        93 ~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~-----~i~  163 (368)
T 1mda_H           93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQ-----LTK  163 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EE-----EEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ce-----EEE
Confidence             3688999999999999998754       1346789999999 6776654  467888  88864    00     111


Q ss_pred             cccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCc-----ccccce---eeeecceeeEEEEecCCEEEEEeCCCcEEEE
Q 047728          307 KQECAVTALAISPDA-AIVYCGSSDGLVNFWEREL-----NLSHGG---VLRGHKLAILCLVTAGNLVFSGSADMSICIW  377 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~-----~~~~~~---~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iw  377 (474)
                      . ...   ..+.|++ ..+++.+.|+.+.+.|+..     +.....   ...-...+. . .+++..++..+. +.|.+.
T Consensus       164 v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~vi  236 (368)
T 1mda_H          164 S-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQG  236 (368)
T ss_dssp             C-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEE
T ss_pred             C-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEE
Confidence            0 011   1123433 3445566788888888776     222110   011111222 3 666666666666 999999


Q ss_pred             ECCCCceEEEEeecCC----------ccceEEEEEeeCCccccccceEEEEEe-c---C-----CCcEEEEEccCCCCCC
Q 047728          378 RRKENEHICLSMLTGH----------SGPVKCLAVEKDDESLSREKRWILYSG-S---L-----DKSVKMWRVSEQAPPL  438 (474)
Q Consensus       378 d~~~~~~~~~~~~~~h----------~~~v~~l~~~~~~~~~~~~~~~~l~s~-s---~-----Dg~i~vw~~~~~~~~~  438 (474)
                      |........+..+...          ......++++|+++        .++.+ .   .     ++.+.++|+.+.+.  
T Consensus       237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--------~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--  306 (368)
T 1mda_H          237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCLAAAENTSSVTASVGQT--  306 (368)
T ss_dssp             ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTTSCEEEEEEEESSSCCE--
T ss_pred             ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--------EEEEEeccccCcccccCCCEEEEECCCCeE--
Confidence            9975432222222110          01122268999987        44433 2   1     23466999988742  


Q ss_pred             CCCcccccccCCCCCCCccccCCCCCcCCce
Q 047728          439 VSTTQQHPLEGHGVAPNSLPYAPSFSSQGRI  469 (474)
Q Consensus       439 ~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~  469 (474)
                           ...+.... .+..+    +|++||+.
T Consensus       307 -----v~~i~vg~-~p~gi----~~s~Dg~~  327 (368)
T 1mda_H          307 -----SGPISNGH-DSDAI----IAAQDGAS  327 (368)
T ss_dssp             -----EECCEEEE-EECEE----EECCSSSC
T ss_pred             -----EEEEECCC-CcceE----EECCCCCE
Confidence                 23332221 34455    78899984

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.77  E-value=4.1e-06  Score=85.29  Aligned_cols=262  Identities=16%  Similarity=0.187  Sum_probs=150.7

Q ss_pred             EEcCCEEEEeeCCCcEEEEeC--CccccccccCc----cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCccee
Q 047728          117 AAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNS----GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDASIH  183 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~----~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~  183 (474)
                      +..+..|+.++.|+.|..+|.  ++.+-.+....    ..+. ...+.++.++.+..      +|.|..+|..+++....
T Consensus       114 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             EEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            345677888888999999984  34433332210    1111 11223566666653      58999999999988766


Q ss_pred             eeecc-cCccce---eeeeecCCCCeEEEeeecccee--eeccCCeeEEEecCCCCEEEEEECCC---------------
Q 047728          184 KRVGT-LPTFKD---FIKCSMKPSNYIEVRRHRNGLW--IKHFDAISSLSMSEDQNLLYSASWDK---------------  242 (474)
Q Consensus       184 ~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~dg---------------  242 (474)
                      ..... .+....   .+.....      ... ....|  .++......+++.++..+++.++.++               
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~------~~~-g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~  266 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAK------TWQ-GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDN  266 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHT------TCC-SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred             ecccCCCCCccccccccccccc------cCC-ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence            54321 010000   0000000      000 00000  01223334578888888898888766               


Q ss_pred             ----cEEEEEcCCcceeeeeee--cC-------cceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee--
Q 047728          243 ----TFKVWRTSDYKCLESVIA--HD-------DAVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ--  303 (474)
Q Consensus       243 ----~i~iwd~~~~~~~~~~~~--~~-------~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--  303 (474)
                          .|..+|..+++.+..+..  |.       .+.....+..++    .++.++.+|.+.++|.++++.........  
T Consensus       267 l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  346 (668)
T 1kv9_A          267 LYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT  346 (668)
T ss_dssp             TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC
T ss_pred             eeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc
Confidence                399999999999888764  22       122222222345    48899999999999988765321110000  


Q ss_pred             ---eee-ccccc------------------------EEEEEEcCCCCEEEEEc---------------------------
Q 047728          304 ---TLL-KQECA------------------------VTALAISPDAAIVYCGS---------------------------  328 (474)
Q Consensus       304 ---~~~-~~~~~------------------------v~~l~~~~~~~~l~~~~---------------------------  328 (474)
                         ... ....+                        -..++++|+..++++..                           
T Consensus       347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  426 (668)
T 1kv9_A          347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA  426 (668)
T ss_dssp             SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred             cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence               000 00000                        01267788776666421                           


Q ss_pred             ---------CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728          329 ---------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       329 ---------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                               .+|.|..||+.+++..-+...........+...+.+++.++.|+.++.||.++++..
T Consensus       427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                     247899999988876544443333223456667899999999999999999999844

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.77  E-value=4.3e-06  Score=78.71  Aligned_cols=221  Identities=15%  Similarity=0.139  Sum_probs=133.3

Q ss_pred             cCCE-EEEeeCCCcEEEEeCCc------cccccc-------cCccCEEEEEec-CCEEEEEeCC------CeEEEEecCC
Q 047728          119 AGDL-LYTGSDSKNIRVWKNQR------EFSGFK-------SNSGLVKAIVIS-NEKIFSGHQD------GKIRVWKVSS  177 (474)
Q Consensus       119 ~~~~-l~tgs~dg~v~vwd~~~------~~~~~~-------~h~~~V~~i~~~-~~~l~s~~~d------g~i~vwd~~~  177 (474)
                      ++++ +++|..++.|.|+|+..      ....+.       .....-..+... +..++++..+      |.|.+.|..+
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCC
Confidence            3554 55677788999999641      122221       011122233333 3366665555      7899999988


Q ss_pred             CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------------------
Q 047728          178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------------------  239 (474)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------------  239 (474)
                      .+..........                             -..--..+.|+|+++.+++..                  
T Consensus       174 ~~v~~~~~~~~~-----------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~  224 (462)
T 2ece_A          174 FEPLGKWEIDRG-----------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD  224 (462)
T ss_dssp             CCEEEECCSBCT-----------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred             CeEEEEEccCCC-----------------------------CccccceEEECCCCCEEEEccCcCccccccccchhhhhh
Confidence            876543322210                             111233578899999888875                  


Q ss_pred             -CCCcEEEEEcCCcceeeeeeec--CcceeEEEe--cCCC-eEEEee------CCCcEEEEEcccCCCceeeeee--ee-
Q 047728          240 -WDKTFKVWRTSDYKCLESVIAH--DDAVNSIVA--GFDG-LVFTGS------ADGTVKVWRRELQGKGTKHFFS--QT-  304 (474)
Q Consensus       240 -~dg~i~iwd~~~~~~~~~~~~~--~~~v~~v~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~--~~-  304 (474)
                       .+.+|.+||+.+++.+.++...  ......+.|  +|++ ++++++      .+++|.+|..+. +.-......  .. 
T Consensus       225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~  303 (462)
T 2ece_A          225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAE  303 (462)
T ss_dssp             HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCE
T ss_pred             ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCc
Confidence             3689999999998888887653  133455555  9998 444444      567888877653 111110000  00 


Q ss_pred             -eec-----------ccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcc---cccceeeee-----------c----ce
Q 047728          305 -LLK-----------QECAVTALAISPDAAIVYCGSS-DGLVNFWERELN---LSHGGVLRG-----------H----KL  353 (474)
Q Consensus       305 -~~~-----------~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~---~~~~~~~~~-----------~----~~  353 (474)
                       ...           .......|.+++|+++|+++.. .+.|.+||+...   .....+..+           .    ..
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP  383 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP  383 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC
T ss_pred             cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC
Confidence             000           0245788999999999988766 678999998633   222222222           1    13


Q ss_pred             eeEEEEecCCEEEEEe
Q 047728          354 AILCLVTAGNLVFSGS  369 (474)
Q Consensus       354 ~v~~~~~~~~~l~sgs  369 (474)
                      .-+.++++|++|+++.
T Consensus       384 r~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          384 QMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSSEEEEEC
T ss_pred             CEEEEcCCCCEEEEEc
Confidence            5588999999999887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=2.6e-06  Score=75.24  Aligned_cols=196  Identities=10%  Similarity=0.030  Sum_probs=128.0

Q ss_pred             CeeEEEecCCCCEEEEEE-C--CCcEEEEEcCCcceeeeeeecCc-ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728          222 AISSLSMSEDQNLLYSAS-W--DKTFKVWRTSDYKCLESVIAHDD-AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s-~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      ....+.|++++ .|+.++ .  ++.|.++|+.+++.+..+..... ....+++..+...++.-.++.+.++|..+...  
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v--   98 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN--   98 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE--
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE--
Confidence            35799999986 555443 3  58999999999999888764222 22345665433555556789999999875432  


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-e-----eeEEEEecCCEEEEEeCC
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-L-----AILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~-----~v~~~~~~~~~l~sgs~d  371 (474)
                          ...+......  ...++++++.++++..++.|.++|..+.+....+..+.. .     .-+.+. ++...+....+
T Consensus        99 ----~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A           99 ----IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             ----EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             ----EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence                1122111011  133556777777777789999999988766655543321 1     123333 56444444467


Q ss_pred             CcEEEEECCCCceEEEEeecCC-----------ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          372 MSICIWRRKENEHICLSMLTGH-----------SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h-----------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.|.+.|..+++......+.+.           ....+.|+|+|+++.       +++++...+.|.+-++...
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~-------lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR-------IFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE-------EEEEETTCSEEEEEEEEEC
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE-------EEEECCCCCeEEEEEEecc
Confidence            8999999999984433333211           135689999999864       7888889999999998775

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.75  E-value=2.2e-06  Score=85.47  Aligned_cols=243  Identities=7%  Similarity=-0.039  Sum_probs=138.5

Q ss_pred             EEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC
Q 047728          154 IVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN  233 (474)
Q Consensus       154 i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  233 (474)
                      ++..++.++.++.|+.|..+|..+++............                      . +.-...++    +  .+.
T Consensus       111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----------------------~-~~~~~~P~----v--~~g  161 (571)
T 2ad6_A          111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV----------------------G-STLTQAPF----V--AKD  161 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----------------------T-CBCCSCCE----E--ETT
T ss_pred             cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc----------------------c-ceeccCCE----E--ECC
Confidence            34568899999999999999999998776544321000                      0 00011111    1  134


Q ss_pred             EEEEEEC------CCcEEEEEcCCcceeeeeeecCcc-------------------------------------e-eEEE
Q 047728          234 LLYSASW------DKTFKVWRTSDYKCLESVIAHDDA-------------------------------------V-NSIV  269 (474)
Q Consensus       234 ~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~  269 (474)
                      .+++++.      ++.|..+|.++++.+..+......                                     + ..++
T Consensus       162 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a  241 (571)
T 2ad6_A          162 TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYA  241 (571)
T ss_dssp             EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred             EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEE
Confidence            5666654      789999999999988776542211                                     0 1244


Q ss_pred             ecCCC-eEEEeeCC----------------CcEEEEEcccCCCceeeeeeee----eecccccEEEEEEcCCCC---EEE
Q 047728          270 AGFDG-LVFTGSAD----------------GTVKVWRRELQGKGTKHFFSQT----LLKQECAVTALAISPDAA---IVY  325 (474)
Q Consensus       270 ~~~~~-~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~---~l~  325 (474)
                      +.++. .++.+..+                +.|..+|.++++..........    ......++. +....+++   .++
T Consensus       242 ~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~  320 (571)
T 2ad6_A          242 YDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLS  320 (571)
T ss_dssp             EETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEE
T ss_pred             EcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEE
Confidence            55543 55555432                3588888876543211110000    001112222 22224663   577


Q ss_pred             EEcCCCcEEEeecCcccccceeeeec----------------------------------------ceeeEEEEecCCEE
Q 047728          326 CGSSDGLVNFWERELNLSHGGVLRGH----------------------------------------KLAILCLVTAGNLV  365 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~~~~----------------------------------------~~~v~~~~~~~~~l  365 (474)
                      .++.+|.++++|..+++.+.......                                        .-...+++++..++
T Consensus       321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  400 (571)
T 2ad6_A          321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL  400 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence            88899999999988876543322111                                        00123566666666


Q ss_pred             EEEe-------------------------------------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc
Q 047728          366 FSGS-------------------------------------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES  408 (474)
Q Consensus       366 ~sgs-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  408 (474)
                      ++..                                     .+|.|..||..+++..  ..... ..++....+...+. 
T Consensus       401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~--W~~~~-~~~~~~~~~~t~gg-  476 (571)
T 2ad6_A          401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK--WTKWE-KFAAWGGTLYTKGG-  476 (571)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE--EEEEE-SSCCCSBCEEETTT-
T ss_pred             EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE--EEecC-CCCccceeEEECCC-
Confidence            6653                                     3578999999888743  33321 12233333333444 


Q ss_pred             ccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          409 LSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       409 ~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                             +++.++.||.|+.||..+++..
T Consensus       477 -------~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          477 -------LVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             -------EEEEECTTSEEEEEETTTCCEE
T ss_pred             -------EEEEEcCCCeEEEEECCCCCEE
Confidence                   6777899999999999988543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.73  E-value=7.2e-06  Score=81.78  Aligned_cols=266  Identities=12%  Similarity=0.080  Sum_probs=143.0

Q ss_pred             EEcCCEEEEeeCCCcEEEEeCC--ccccccccCc----cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCccee
Q 047728          117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS----GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDASIH  183 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~----~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~  183 (474)
                      +..+..|+.++.|+.|..+|..  +.+-......    ..+. .....++.++.++.      +|.|..+|..+++....
T Consensus       112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            3457788888888999888843  3332222111    0111 11223667777765      79999999999987765


Q ss_pred             eeecccCccceeeeeecCCCC-e-------EEEeeeccceee-eccCCeeEEEecCCCCEEEEEECC-------------
Q 047728          184 KRVGTLPTFKDFIKCSMKPSN-Y-------IEVRRHRNGLWI-KHFDAISSLSMSEDQNLLYSASWD-------------  241 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d-------------  241 (474)
                      ........ ............ +       ...+.  ...+. +-......+++.++...++.+..+             
T Consensus       192 ~~~~~~~~-~~~~~p~~~~~~~~~G~~~~g~~~w~--~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~  268 (571)
T 2ad6_A          192 AFATGSDD-SVRLAKDFNSANPHYGQFGLGTKTWE--GDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EESSSCHH-HHTBCTTTTTTCGGGCCSSHHHHTSS--TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EccCCCcc-ccccCcccccccccccccccccccCc--ccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence            54321100 000000000000 0       00000  00000 000011235566666677766532             


Q ss_pred             ---CcEEEEEcCCcceeeeeeecCc------ceeE---EEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee--
Q 047728          242 ---KTFKVWRTSDYKCLESVIAHDD------AVNS---IVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ--  303 (474)
Q Consensus       242 ---g~i~iwd~~~~~~~~~~~~~~~------~v~~---v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--  303 (474)
                         +.|..+|.++++.+..+.....      .+..   +....++    .++.++.+|.+.++|.++++.........  
T Consensus       269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~  348 (571)
T 2ad6_A          269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence               3599999999998887754211      1111   2222355    36678889999999987654322111100  


Q ss_pred             ----eee-cccccE--------------------------EEEEEcCCCCEEEEEc------------------------
Q 047728          304 ----TLL-KQECAV--------------------------TALAISPDAAIVYCGS------------------------  328 (474)
Q Consensus       304 ----~~~-~~~~~v--------------------------~~l~~~~~~~~l~~~~------------------------  328 (474)
                          ... ....++                          ..++++|+..++++..                        
T Consensus       349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  428 (571)
T 2ad6_A          349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence                000 000111                          2467888777777653                        


Q ss_pred             -------------CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728          329 -------------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       329 -------------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                                   .+|.|..||..+++..-....+.......+...+.+++.++.||.|+.||.++++..
T Consensus       429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence                         347899999988866544433322222233456788888999999999999999844

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.67  E-value=2.2e-05  Score=78.36  Aligned_cols=280  Identities=11%  Similarity=0.059  Sum_probs=144.4

Q ss_pred             EEEeeCCCcEEEEeC--CccccccccCc----cCEE-EEEecCCEEEEEe------CCCeEEEEecCCCCcceeeeeccc
Q 047728          123 LYTGSDSKNIRVWKN--QREFSGFKSNS----GLVK-AIVISNEKIFSGH------QDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       123 l~tgs~dg~v~vwd~--~~~~~~~~~h~----~~V~-~i~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      |+.++.|+.|..+|.  ++.+-......    ..+. .-.+.++.++.++      .+|.|+.+|..+++..........
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            777777888877773  33322221111    0111 1122356677665      389999999999988765543211


Q ss_pred             CccceeeeeecCCC-Ce-------EEEeeeccceeeeccCCe-eEEEecCCCCEEEEEECC----------------CcE
Q 047728          190 PTFKDFIKCSMKPS-NY-------IEVRRHRNGLWIKHFDAI-SSLSMSEDQNLLYSASWD----------------KTF  244 (474)
Q Consensus       190 ~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~d----------------g~i  244 (474)
                      ... ..+....... ..       ...+  ....+..-...+ ..+++.++..+++.+..+                +.|
T Consensus       204 ~~~-~~~~p~~~~~~~~~g~~~~g~~tw--~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          204 DKD-LLLASDFNIKNPHYGQKGLGTGTW--EGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             HHH-HTBCTTTTTTCGGGCCTTHHHHTS--STTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             ccc-cccccccccccccccccccccccC--CCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            000 0000000000 00       0000  000000001111 134566777778877665                379


Q ss_pred             EEEEcCCcceeeeeeecCcce---------eEEEec-CCC----eEEEeeCCCcEEEEEcccCCCceeeeeee------e
Q 047728          245 KVWRTSDYKCLESVIAHDDAV---------NSIVAG-FDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ------T  304 (474)
Q Consensus       245 ~iwd~~~~~~~~~~~~~~~~v---------~~v~~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~  304 (474)
                      ..+|.++++.+..++......         .-+... .++    .++.++.+|.+.++|.++++.........      .
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            999999999988776432111         112221 345    46678899999999987655322111100      0


Q ss_pred             ee-cccccE--------------------------EEEEEcCCCCEEEEEc-----------------------------
Q 047728          305 LL-KQECAV--------------------------TALAISPDAAIVYCGS-----------------------------  328 (474)
Q Consensus       305 ~~-~~~~~v--------------------------~~l~~~~~~~~l~~~~-----------------------------  328 (474)
                      .. ....++                          ..++++|+..++++..                             
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence            00 000011                          2356666666555431                             


Q ss_pred             ----------CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc-ce
Q 047728          329 ----------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG-PV  397 (474)
Q Consensus       329 ----------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~-~v  397 (474)
                                ..|.|..||+.+++..-....+.....-.+...+.+++.++.|+.++.||.++++..  ..+....+ ..
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l--W~~~l~~g~~~  518 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL--WKFKIPSGAIG  518 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE--EEEECSSCCCS
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE--EEeeCCCCcEe
Confidence                      346788888888766544432222111224456888999999999999999999854  33332221 11


Q ss_pred             EEEEEeeCCc
Q 047728          398 KCLAVEKDDE  407 (474)
Q Consensus       398 ~~l~~~~~~~  407 (474)
                      .-+.+..+++
T Consensus       519 ~P~~y~~~G~  528 (599)
T 1w6s_A          519 YPMTYTHKGT  528 (599)
T ss_dssp             CCEEEEETTE
T ss_pred             ccEEEEeCCE
Confidence            2245556665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=8.2e-05  Score=77.49  Aligned_cols=284  Identities=11%  Similarity=0.123  Sum_probs=166.8

Q ss_pred             CcEEEEEEc-CCEEEEeeCCCcEEEEeCCcc-ccccc--------cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCC
Q 047728          111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGFK--------SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKD  179 (474)
Q Consensus       111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~~--------~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~  179 (474)
                      ..|.++..+ ...|..|+.++-|..||.... +..+.        .....|.++..+ ...|..|..+ -|.+||..+++
T Consensus       163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~  241 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET  241 (781)
T ss_dssp             CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred             cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence            457888876 556667777755888885432 22221        113568888887 4567677766 48888876654


Q ss_pred             cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728          180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI  259 (474)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  259 (474)
                      ..........                         ...-....|.++...+++. |..|+..+-|.++|..+.+......
T Consensus       242 ~~~~~~~~~~-------------------------~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~  295 (781)
T 3v9f_A          242 FTNFHNNPGN-------------------------IHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ  295 (781)
T ss_dssp             EEC------------------------------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-------
T ss_pred             EEEEEcCCCc-------------------------cccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec
Confidence            3211000000                         0000345688998887765 5567764568899987655322111


Q ss_pred             --------------ecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee-----eeecccccEEEEEEcCC
Q 047728          260 --------------AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ-----TLLKQECAVTALAISPD  320 (474)
Q Consensus       260 --------------~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~v~~l~~~~~  320 (474)
                                    .....|.++...+++.|..|+.++-|..++.....-.  .....     ........|.++...++
T Consensus       296 ~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~  373 (781)
T 3v9f_A          296 IRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH--TWSYSPTQMNESSLSNKVVSSVCDDGQ  373 (781)
T ss_dssp             --CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE--EEC----CCCSSCCSSSCEEEEEECTT
T ss_pred             cccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce--eeccCccccccCCCCCcceEEEEEcCC
Confidence                          1345789999988888888998888999987543211  00000     01113456999999888


Q ss_pred             CCEEEEEcCCCcEEEeecCcccccceee--eecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728          321 AAIVYCGSSDGLVNFWERELNLSHGGVL--RGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV  397 (474)
Q Consensus       321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v  397 (474)
                      +.+. +|+.++-|..||..+........  ......|.++..+ ...|..|+.++-|..+|..+++.............|
T Consensus       374 g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v  452 (781)
T 3v9f_A          374 GKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDV  452 (781)
T ss_dssp             SCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCE
T ss_pred             CCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeE
Confidence            7755 46666668889876542211100  1123456777665 445666887778999998777532111001234678


Q ss_pred             EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .++...+++.         |..|+. +-|..|+..++
T Consensus       453 ~~i~~d~~g~---------lwigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          453 RVFYEDKNKK---------IWIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             EEEEECTTSE---------EEEEET-TEEEEEESSSS
T ss_pred             EEEEECCCCC---------EEEEEC-CceEEEeCCCC
Confidence            8988887776         444444 45888887664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=4.6e-05  Score=79.34  Aligned_cols=284  Identities=10%  Similarity=0.060  Sum_probs=165.8

Q ss_pred             CcEEEEEEc-CCEEEEeeCCCcEEEEeCCcc-cccc---------------ccCccCEEEEEec-CCEEEEEeCCCeEEE
Q 047728          111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGF---------------KSNSGLVKAIVIS-NEKIFSGHQDGKIRV  172 (474)
Q Consensus       111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~---------------~~h~~~V~~i~~~-~~~l~s~~~dg~i~v  172 (474)
                      ..|+++..+ ...|..|+..+-|.+++.... +..+               .-....|.++..+ ...|..|..++-|..
T Consensus       258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~  337 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINF  337 (781)
T ss_dssp             CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEE
T ss_pred             ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEE
Confidence            458888887 456777877455888875422 1111               1234578999888 557888887777888


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY  252 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  252 (474)
                      ++................                     ...  .-....|.++...+++. |..|+.++-|..||..++
T Consensus       338 ~~~~~~~~~~~~~~~~~~---------------------~~~--~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          338 ISNAPPTFHTWSYSPTQM---------------------NES--SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKR  393 (781)
T ss_dssp             ECSSCCSCEEEC----CC---------------------CSS--CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEE
T ss_pred             eCCCCCcceeeccCcccc---------------------ccC--CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCC
Confidence            887765432111000000                     000  00335689998887765 556676666999998765


Q ss_pred             ceeeee---eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC
Q 047728          253 KCLESV---IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS  329 (474)
Q Consensus       253 ~~~~~~---~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  329 (474)
                      ......   ......|.++...+++.|..|+.++-|..+|......  . .. .........|.++...+++.+.+ |+.
T Consensus       394 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~-~~-~~~~~~~~~v~~i~~d~~g~lwi-gt~  468 (781)
T 3v9f_A          394 VAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF--Q-II-ELEKNELLDVRVFYEDKNKKIWI-GTH  468 (781)
T ss_dssp             EEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE--E-EC-CSTTTCCCCEEEEEECTTSEEEE-EET
T ss_pred             eEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE--E-Ee-ccCCCCCCeEEEEEECCCCCEEE-EEC
Confidence            432211   1234678899888888888888877888888653211  0 00 00012346789999988877555 445


Q ss_pred             CCcEEEeecCcccccceeeeec-----ceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeec-CCccceEEEEE
Q 047728          330 DGLVNFWERELNLSHGGVLRGH-----KLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLT-GHSGPVKCLAV  402 (474)
Q Consensus       330 dg~i~v~d~~~~~~~~~~~~~~-----~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~  402 (474)
                       +-|..||..+.... ......     ...+.++..+ ...|..|+.++-|..||..+.+........ .....|.++..
T Consensus       469 -~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~  546 (781)
T 3v9f_A          469 -AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYR  546 (781)
T ss_dssp             -TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEE
T ss_pred             -CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEE
Confidence             55888987765322 111111     2345666554 334555666455888988776532111101 12356889988


Q ss_pred             eeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      .+++.        +.+ |+.+|.|..|+..+.
T Consensus       547 d~~g~--------lWi-~T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          547 SSKGQ--------MWL-ATGEGLVCFPSARNF  569 (781)
T ss_dssp             CTTSC--------EEE-EETTEEEEESCTTTC
T ss_pred             CCCCC--------EEE-EECCCceEEECCCCC
Confidence            88887        444 444675577776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=2.7e-05  Score=71.74  Aligned_cols=194  Identities=13%  Similarity=0.072  Sum_probs=112.0

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-----cCcceeEEEecC-CCeEEEeeC-------------
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-----HDDAVNSIVAGF-DGLVFTGSA-------------  281 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~v~~~~-~~~l~~~~~-------------  281 (474)
                      ..+..+++.++...|+.+...+.|..+|..+++. ..+..     .......+++.+ +|.++.+..             
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            3578899997334566665556688888776542 22211     113467899999 884444432             


Q ss_pred             -----CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccc-eeeeec-ce
Q 047728          282 -----DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHG-GVLRGH-KL  353 (474)
Q Consensus       282 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~-~~~~~~-~~  353 (474)
                           ++.|..||......       ............++++++++.|+++ ...+.|.+|++.....-. ..+... ..
T Consensus       159 ~~~~~~g~v~~~d~~~~~~-------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP  231 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKET-------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNP  231 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEE-------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSE
T ss_pred             cccCCCceEEEEeCCCCEE-------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCC
Confidence                 35677777643211       1111112335679999999876655 556889999987532110 111111 12


Q ss_pred             eeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEEeecCC----ccceEEEEEeeCCccccccceEEEEE
Q 047728          354 AILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLSMLTGH----SGPVKCLAVEKDDESLSREKRWILYS  419 (474)
Q Consensus       354 ~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~~~~l~s  419 (474)
                      .-+++.++|++.++...          .+.|..+|.. ++.  +..+...    ...++++++ .++.        ++++
T Consensus       232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~--~~~~~~~~g~~~~~~~~~~~-~~g~--------L~v~  299 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI--LEVIPLPPPFAGEHFEQIQE-HDGL--------LYIG  299 (322)
T ss_dssp             EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE--EEEEECCTTTTTSCCCEEEE-ETTE--------EEEE
T ss_pred             CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCE--EEEEECCCCCccccceEEEE-eCCE--------EEEe
Confidence            33566677886666544          4678888875 442  2233222    234666766 4555        6667


Q ss_pred             ecCCCcEEEEEccCC
Q 047728          420 GSLDKSVKMWRVSEQ  434 (474)
Q Consensus       420 ~s~Dg~i~vw~~~~~  434 (474)
                      ....+.|.++++...
T Consensus       300 ~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          300 TLFHGSVGILVYDKK  314 (322)
T ss_dssp             CSSCSEEEEEEC---
T ss_pred             ecCCCceEEEecccc
Confidence            667888999998654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.59  E-value=4.5e-05  Score=74.45  Aligned_cols=262  Identities=10%  Similarity=-0.026  Sum_probs=142.2

Q ss_pred             cCCEEEEeeC-CCcEEEEeCCc--ccccccc-CccCEEEEEe----cCCEEEEEe------------------CCCeEEE
Q 047728          119 AGDLLYTGSD-SKNIRVWKNQR--EFSGFKS-NSGLVKAIVI----SNEKIFSGH------------------QDGKIRV  172 (474)
Q Consensus       119 ~~~~l~tgs~-dg~v~vwd~~~--~~~~~~~-h~~~V~~i~~----~~~~l~s~~------------------~dg~i~v  172 (474)
                      +|++|+.... ++.|.+.|+..  ....+.- .......+++    +++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            7887776655 55688988653  2232221 2234667775    367888774                  3457889


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecc---ceeeecc----CCeeEE------EecCCCCEEEEEE
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRN---GLWIKHF----DAISSL------SMSEDQNLLYSAS  239 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~----~~V~~l------~~~~~~~~l~s~s  239 (474)
                      .|.++.+......+...+..   +..+.+ ..+..+.....   ..+..-.    +.|.-+      .+.++|+....  
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~---~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i--  253 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDN---CDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL--  253 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCC---EEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE--
T ss_pred             EECCCCeEEEEEEeCCCccc---eEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE--
Confidence            99888766555444322211   111111 11111111000   0000000    000000      11233443332  


Q ss_pred             CCCcEEEEEcCC--cce-eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC-----ceeeeeeeeeeccc
Q 047728          240 WDKTFKVWRTSD--YKC-LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK-----GTKHFFSQTLLKQE  309 (474)
Q Consensus       240 ~dg~i~iwd~~~--~~~-~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~  309 (474)
                        +.|.+.|.++  ++. +..+.. .....++.++|||  .++++..+.+|.++|+.....     ............-.
T Consensus       254 --~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          254 --NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             --TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             --CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence              4589999887  444 455544 3456889999999  566666789999999984310     00000111222334


Q ss_pred             ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---------cccceeeeeccee-----e--EEEEecCCEEEEEeC---
Q 047728          310 CAVTALAISPDAAIVYCGSSDGLVNFWERELN---------LSHGGVLRGHKLA-----I--LCLVTAGNLVFSGSA---  370 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~~~~~~~~~~~~-----v--~~~~~~~~~l~sgs~---  370 (474)
                      .....++|+|+|...++...|++|.+||+...         ......+.-|-.+     .  ..+++||++|++...   
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk  410 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK  410 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence            56889999999955556778999999998762         1122222222221     1  234678999999864   


Q ss_pred             CCcE----------EEEECCCCceEEEEe
Q 047728          371 DMSI----------CIWRRKENEHICLSM  389 (474)
Q Consensus       371 dg~i----------~iwd~~~~~~~~~~~  389 (474)
                      |..+          .++|+.+++...+..
T Consensus       411 dr~~~~gp~~~~~~ql~dis~~~m~lv~d  439 (595)
T 1fwx_A          411 DRFLNVGPLKPENDQLIDISGDKMVLVHD  439 (595)
T ss_dssp             TSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred             cccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence            4321          889997766544433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.58  E-value=7.8e-06  Score=71.34  Aligned_cols=175  Identities=10%  Similarity=0.043  Sum_probs=110.4

Q ss_pred             eeEEEecCCCCEEEEEECCC--cEEEEEcCCcceeeeeeecCcce-eEEEecCCCeEEEeeCCCcEEEEEcccCCCceee
Q 047728          223 ISSLSMSEDQNLLYSASWDK--TFKVWRTSDYKCLESVIAHDDAV-NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      ...|.|+ ++.++.+.+.+|  .|+++|+++++.+..+....... ..++...+...++.-.++.+.+||..+...    
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~----  119 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ----  119 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE----
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE----
Confidence            4788888 666666777766  89999999999998886543321 235554333444555689999999876553    


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec-ceee---EEEEe-cCCEEEEEeCCCcE
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH-KLAI---LCLVT-AGNLVFSGSADMSI  374 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v---~~~~~-~~~~l~sgs~dg~i  374 (474)
                        ...+....   ....+.+++..|+.+..++.|.++|..+......+.... ..++   ..+.+ +|.+.+..-.++.|
T Consensus       120 --~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I  194 (262)
T 3nol_A          120 --VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI  194 (262)
T ss_dssp             --EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred             --EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence              12221111   112333567777777777889999998876655544321 1121   12222 56544444468899


Q ss_pred             EEEECCCCceEEEEeecCC----------ccceEEEEEeeCCc
Q 047728          375 CIWRRKENEHICLSMLTGH----------SGPVKCLAVEKDDE  407 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~~~~~~  407 (474)
                      .+.|..+++......+.+-          ..-.+.|||+|+.+
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence            9999999985433333211          13568999999877

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.52  E-value=7.1e-05  Score=74.70  Aligned_cols=181  Identities=20%  Similarity=0.139  Sum_probs=107.0

Q ss_pred             EEEecCCCCEEEEEEC--------------------C----CcEEEEEcCCcceeeeeee--cCc----ceeE-EEec--
Q 047728          225 SLSMSEDQNLLYSASW--------------------D----KTFKVWRTSDYKCLESVIA--HDD----AVNS-IVAG--  271 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~--------------------d----g~i~iwd~~~~~~~~~~~~--~~~----~v~~-v~~~--  271 (474)
                      .+++.|+..+++.+..                    |    +.|..+|..+++.+..++.  |..    .+.. +.+.  
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~  329 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK  329 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence            4667777778887763                    2    5899999999999888754  211    1111 1111  


Q ss_pred             -CCC----eEEEeeCCCcEEEEEcccCCCceeeeeee------ee-------------e---------ccccc-------
Q 047728          272 -FDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ------TL-------------L---------KQECA-------  311 (474)
Q Consensus       272 -~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~-------------~---------~~~~~-------  311 (474)
                       .++    .++.++.+|.++++|.++++.........      ..             .         .....       
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~  409 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL  409 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence             344    57788999999999987654321111100      00             0         00000       


Q ss_pred             ----EEEEEEcCCCCEEEEEc---------------------------------CCCcEEEeecCcccccceeeeeccee
Q 047728          312 ----VTALAISPDAAIVYCGS---------------------------------SDGLVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       312 ----v~~l~~~~~~~~l~~~~---------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                          -..++++|+..++++..                                 .+|.|..||+.+++..-+........
T Consensus       410 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~  489 (582)
T 1flg_A          410 GGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLW  489 (582)
T ss_dssp             CSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCC
T ss_pred             cccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCc
Confidence                01356677655555432                                 35789999998887654443332222


Q ss_pred             eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce-EEEEEeeCCc
Q 047728          355 ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV-KCLAVEKDDE  407 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~  407 (474)
                      ...+...+.+++.|+.|+.++.||.++++..  ..+....+.+ .-+.+..+++
T Consensus       490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~l--W~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKEL--WKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SCCEEETTTEEEEECTTSEEEEEETTTCCEE--EEEECSSCCCSCCEEEEETTE
T ss_pred             ccceEeCCCEEEEECCCCcEEEEECCCCCEE--EEecCCCCcccCceEEEECCE
Confidence            2234446888999999999999999999854  4443322211 2255667776

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.52  E-value=5.3e-05  Score=69.69  Aligned_cols=231  Identities=10%  Similarity=0.021  Sum_probs=131.5

Q ss_pred             EcCCEEEEeeCCCcEEEEeCCc-ccccccc--------------------CccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728          118 AAGDLLYTGSDSKNIRVWKNQR-EFSGFKS--------------------NSGLVKAIVIS--NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       118 ~~~~~l~tgs~dg~v~vwd~~~-~~~~~~~--------------------h~~~V~~i~~~--~~~l~s~~~dg~i~vwd  174 (474)
                      +++++++++..++.|..|+... .+..+..                    .......++++  ++.|+.+...+.|..++
T Consensus        28 ~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d  107 (322)
T 2fp8_A           28 STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVG  107 (322)
T ss_dssp             TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEe
Confidence            3477788888888899998543 2322210                    12357888887  46788777666688887


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEEC-------------
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASW-------------  240 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~-------------  240 (474)
                      ..++.........                         .   .........+++.+ ++++.++-..             
T Consensus       108 ~~~g~~~~~~~~~-------------------------~---~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A          108 SEGGHATQLATSV-------------------------D---GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             TTCEECEEEESEE-------------------------T---TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCCCEEEEecccC-------------------------C---CCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            6644321110000                         0   00123467899999 8876665432             


Q ss_pred             ----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728          241 ----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA  314 (474)
Q Consensus       241 ----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  314 (474)
                          ++.|..||..+++...... .......+++++++ .|+++ ...+.|.+|++............ .   ... ...
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~---~~g-P~g  233 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K---IPN-PGN  233 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E---CSS-EEE
T ss_pred             ccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e---CCC-CCC
Confidence                3678889987665433222 23445789999998 45544 56688999998743221111111 1   123 788


Q ss_pred             EEEcCCCCEEEEEcC----------CCcEEEeecCcccccceeeeec---ceeeEEEE-ecCCEEEEEeCCCcEEEEECC
Q 047728          315 LAISPDAAIVYCGSS----------DGLVNFWERELNLSHGGVLRGH---KLAILCLV-TAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       315 l~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~-~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      ++++++|++.++...          .+.|..+|.. +.....+....   ...+.++. .++.++++....+.|..+++.
T Consensus       234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred             eEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence            999999987666544          4668888865 32222221111   11222222 345555555567888888876


Q ss_pred             CCc
Q 047728          381 ENE  383 (474)
Q Consensus       381 ~~~  383 (474)
                      ...
T Consensus       313 ~~~  315 (322)
T 2fp8_A          313 KKG  315 (322)
T ss_dssp             ---
T ss_pred             ccc
Confidence            443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.50  E-value=3e-05  Score=77.43  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=26.3

Q ss_pred             EecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728          155 VISNEKIFSGHQDGKIRVWKVSSKDASIHKRV  186 (474)
Q Consensus       155 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  186 (474)
                      ++.++.++.++.|+.|.-+|..+++.......
T Consensus       114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A          114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            45688899999999999999999988765543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.50  E-value=1.2e-05  Score=80.18  Aligned_cols=151  Identities=9%  Similarity=0.044  Sum_probs=87.3

Q ss_pred             EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-
Q 047728          161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-  239 (474)
Q Consensus       161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-  239 (474)
                      |+.++.|+.|..+|..+++............                      . +.-...++    +. + ..+++++ 
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~----------------------~-~~~~ssP~----v~-~-g~V~vg~~  174 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKV----------------------G-STLTIAPY----VV-K-DKVIIGSS  174 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGG----------------------T-CBCCSCCE----EE-T-TEEEECCB
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCc----------------------c-ceeecCCE----EE-C-CEEEEEec
Confidence            8999999999999999998765544321000                      0 00001111    11 3 3555554 


Q ss_pred             -----CCCcEEEEEcCCcceeeeeeecCcc-------------------------------------e-eEEEecCCC-e
Q 047728          240 -----WDKTFKVWRTSDYKCLESVIAHDDA-------------------------------------V-NSIVAGFDG-L  275 (474)
Q Consensus       240 -----~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~~~~~~-~  275 (474)
                           .++.|+.+|.++++.+..+......                                     + ..+++.++. +
T Consensus       175 g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~  254 (599)
T 1w6s_A          175 GAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL  254 (599)
T ss_dssp             CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE
T ss_pred             ccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCE
Confidence                 3799999999999988776542211                                     0 023444444 6


Q ss_pred             EEEeeCC----------------CcEEEEEcccCCCceeeeeeeeeecc--------cccEEEEEEc-CCC---CEEEEE
Q 047728          276 VFTGSAD----------------GTVKVWRRELQGKGTKHFFSQTLLKQ--------ECAVTALAIS-PDA---AIVYCG  327 (474)
Q Consensus       276 l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~v~~l~~~-~~~---~~l~~~  327 (474)
                      ++.+..+                +.|..+|.++++....    .....|        ..++. +... .++   ..++.+
T Consensus       255 vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~----~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~  329 (599)
T 1w6s_A          255 IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG----YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHP  329 (599)
T ss_dssp             EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE----EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEE
T ss_pred             EEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE----eecCCCccccccCCCccEE-EeccccCCcEEEEEEEE
Confidence            6666654                3788888876543211    111111        11222 2222 466   467778


Q ss_pred             cCCCcEEEeecCcccccc
Q 047728          328 SSDGLVNFWERELNLSHG  345 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~~  345 (474)
                      +.+|.++++|.++++.+.
T Consensus       330 ~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          330 DRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             CTTSEEEEEETTTCCEEE
T ss_pred             CCCcEEEEEECCCCCEee
Confidence            899999999998876543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.47  E-value=1.8e-05  Score=68.97  Aligned_cols=180  Identities=11%  Similarity=0.036  Sum_probs=115.4

Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce--eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV--NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v--~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      ...|.|+ ++.++.+.+.+|.|+++|+++++.+..+ .. ...  ..+++..+...++.-.++.+.+||..+.+.     
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~-----  128 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-----  128 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE-----
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE-----
Confidence            4688887 3566667778889999999999998887 33 233  335665444555566789999999876543     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec-ceee---EEEEe-cCCEEEEEeCCCcEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH-KLAI---LCLVT-AGNLVFSGSADMSIC  375 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v---~~~~~-~~~~l~sgs~dg~i~  375 (474)
                       ...+.... .-..++  ++++.|+.+..++.|.++|..+.+....+.... ...+   ..+.+ +|.+.+..-.+..|.
T Consensus       129 -~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~  204 (268)
T 3nok_A          129 -ERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL  204 (268)
T ss_dssp             -EEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred             -EEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence             11221111 112333  567888888888999999998876655443322 2121   22333 565444444688999


Q ss_pred             EEECCCCceEEEEeecC-----------CccceEEEEEeeCCccccccceEEEEEec
Q 047728          376 IWRRKENEHICLSMLTG-----------HSGPVKCLAVEKDDESLSREKRWILYSGS  421 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s  421 (474)
                      +.|..+++......+.+           -..-.+.||++|++..       +++||-
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r-------lfVTGK  254 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR-------IFMTGK  254 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC-------EEEEET
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE-------EEEeCC
Confidence            99999998543333321           1135689999998763       666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.46  E-value=2.2e-05  Score=79.89  Aligned_cols=267  Identities=11%  Similarity=0.066  Sum_probs=140.2

Q ss_pred             EEEEE-cCCEEEEeeCCC-----------cEEEEeCCcc----cccc-ccCccCEEEEEe--cCCEEEEEe-CCCeEEEE
Q 047728          114 YSLAA-AGDLLYTGSDSK-----------NIRVWKNQRE----FSGF-KSNSGLVKAIVI--SNEKIFSGH-QDGKIRVW  173 (474)
Q Consensus       114 ~~~~~-~~~~l~tgs~dg-----------~v~vwd~~~~----~~~~-~~h~~~V~~i~~--~~~~l~s~~-~dg~i~vw  173 (474)
                      .++.+ ++++++.|+.+.           .+.+||....    +..+ ..+.....++++  .+..++.|+ .+..+.+|
T Consensus       191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~y  270 (656)
T 1k3i_A          191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  270 (656)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEe
Confidence            34555 688888887543           4788884421    1112 112222323333  467777877 44579999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CC-----CcEEEE
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WD-----KTFKVW  247 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d-----g~i~iw  247 (474)
                      |..+.+....   ..++                            ....-.+++..+++++++.|+ .+     ..+.+|
T Consensus       271 d~~t~~W~~~---~~~~----------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y  319 (656)
T 1k3i_A          271 DSSSDSWIPG---PDMQ----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  319 (656)
T ss_dssp             EGGGTEEEEC---CCCS----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             cCcCCceeEC---CCCC----------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence            9887643221   1111                            011112455567888888888 44     569999


Q ss_pred             EcCCcceeeee----eecCcceeEEEecCCC-eEEEeeCC---------CcEEEEEcccCCCceeeeeeeeeec------
Q 047728          248 RTSDYKCLESV----IAHDDAVNSIVAGFDG-LVFTGSAD---------GTVKVWRRELQGKGTKHFFSQTLLK------  307 (474)
Q Consensus       248 d~~~~~~~~~~----~~~~~~v~~v~~~~~~-~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~------  307 (474)
                      |..+.+-...-    ......-....+..++ .++.|+.+         ..+..||.....-.  . .......      
T Consensus       320 d~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~-~~~~~~~~~~~~~  396 (656)
T 1k3i_A          320 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--K-SAGKRQSNRGVAP  396 (656)
T ss_dssp             ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--E-EEEECEETTEECC
T ss_pred             CCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee--e-cCCccccccccCC
Confidence            99876533210    0000000001112233 44445444         35677887643311  0 1111100      


Q ss_pred             ccccEEEEEEcC-CCCEEEEEcCCC-----------cEEEeecCcccccce----eeeecceeeEEEEecCCEEEEEeCC
Q 047728          308 QECAVTALAISP-DAAIVYCGSSDG-----------LVNFWERELNLSHGG----VLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       308 ~~~~v~~l~~~~-~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~----~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ....-.++.+.. +++++++|+.++           .|.+||..+......    ..........++.+++++++.|+.+
T Consensus       397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence            111234445544 777888887542           677888776532211    1111112223455689999999864


Q ss_pred             -----------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728          372 -----------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       372 -----------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                                 ..+.+||..+.+...+..+........+..+.++++        +++.|+.
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~--------v~v~GG~  530 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR--------VFNGGGG  530 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC--------EEEEECC
T ss_pred             cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE--------EEecCCC
Confidence                       568999998877544333332223334455678888        8888874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.41  E-value=2.5e-05  Score=68.88  Aligned_cols=167  Identities=8%  Similarity=0.014  Sum_probs=106.5

Q ss_pred             ceeeeeeecCc--ceeEEEecCCCeEEEee-C--CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728          253 KCLESVIAHDD--AVNSIVAGFDGLVFTGS-A--DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG  327 (474)
Q Consensus       253 ~~~~~~~~~~~--~v~~v~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  327 (474)
                      +.+.++. |..  ....+.+++++.|+.++ .  ++.|+++|+.+++....     ...........+++.. +...++.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-----i~l~~~~fgeGi~~~g-~~lyv~t   82 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI-----HKMDDSYFGEGLTLLN-EKLYQVV   82 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-----EECCTTCCEEEEEEET-TEEEEEE
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-----EecCCCcceEEEEEeC-CEEEEEE
Confidence            4455553 443  35789999988555443 2  58999999987653211     1111222233455552 2344445


Q ss_pred             cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc---ceEEEEEee
Q 047728          328 SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG---PVKCLAVEK  404 (474)
Q Consensus       328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~~~  404 (474)
                      -.++.+.++|..+.+....+..+ ...-..++++++.++++..++.|.++|..+.+.........+..   .++.+.|. 
T Consensus        83 ~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           83 WLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             ecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            56789999999987766554434 22335588898888887788999999998877433222222222   36778888 


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      ++.        +++....++.|.+-|..+++.
T Consensus       161 dg~--------lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          161 NGE--------VWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             TTE--------EEEEETTSSEEEEEETTTCCE
T ss_pred             CCE--------EEEecCCCCeEEEEECCCCcE
Confidence            665        666666788999999988854

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.38  E-value=0.0002  Score=61.85  Aligned_cols=192  Identities=11%  Similarity=0.037  Sum_probs=117.7

Q ss_pred             CeeEEEecCCCCEEEEEECC--CcEEEEEcCCcceeeeeeecCcce-eEEEecCCCeEEEeeCCCcEEEEEcccCCCcee
Q 047728          222 AISSLSMSEDQNLLYSASWD--KTFKVWRTSDYKCLESVIAHDDAV-NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      -...+.|++ +.++.+.+.+  ..|+.+|+.+++.+..+....... ..+++..+......-.++.+.+||..+...   
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~---   97 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP---   97 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE---
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE---
Confidence            466899986 4555555554  489999999999998886533321 334554433555566789999999875443   


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-ccee---eEEEEe-cCCEEEEEeCCCc
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLA---ILCLVT-AGNLVFSGSADMS  373 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~---v~~~~~-~~~~l~sgs~dg~  373 (474)
                         ...+..... -..++  +++..|+++..++.|.++|..+......+..+ +...   ...+.+ +|...+..-.+..
T Consensus        98 ---~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~  171 (243)
T 3mbr_X           98 ---RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR  171 (243)
T ss_dssp             ---EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred             ---EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence               122221111 13343  56777777777899999999887665444332 2111   233444 4554444446789


Q ss_pred             EEEEECCCCceEEEEeecC-----------CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          374 ICIWRRKENEHICLSMLTG-----------HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      |.+.|..+++......+.+           -..-.+.|+++|++..       +++||-.=  =++|.++
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~-------lfVTGK~w--p~~~~v~  232 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR-------LFVTGKRW--PMLYEIR  232 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE-------EEEEETTC--SEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE-------EEEECCCC--CcEEEEE
Confidence            9999999998543333321           1135689999998763       56666432  2455543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.36  E-value=0.0013  Score=61.95  Aligned_cols=197  Identities=11%  Similarity=0.027  Sum_probs=119.7

Q ss_pred             cCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc
Q 047728          220 FDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG  296 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~  296 (474)
                      ...+..++|.+.+..|+.+ ...+.|..+++........+.........+++.+.+  ++++-...+.|.+.++..... 
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence            3457899999866666555 466889999987655433333333455778888644  455555667788887753221 


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-C-CcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEEe-CC
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-D-GLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGS-AD  371 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs-~d  371 (474)
                           .............++++|.+..|+.... . +.|..++++..... .+..  .....-+++++++..|+.+. ..
T Consensus       194 -----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          194 -----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             -----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             -----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence                 1112223356789999997766665543 3 67888887654322 1111  12234477887666555554 56


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.|..+|+......  ..+.........|++ ..+.        ++++-...+.|..++..++
T Consensus       268 ~~I~~~d~dG~~~~--~~~~~~~~~P~giav-~~~~--------ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          268 HVIERANLDGSHRK--AVISQGLPHPFAITV-FEDS--------LYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TEEEEECTTSCSCE--EEECSSCSSEEEEEE-ETTE--------EEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEeCCCCeeE--EEEECCCCCceEEEE-ECCE--------EEEeeCCCCeEEEEECCCC
Confidence            78999998765432  122223445678888 3444        6677777788888875444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.32  E-value=0.002  Score=59.72  Aligned_cols=197  Identities=11%  Similarity=0.016  Sum_probs=119.8

Q ss_pred             CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCce
Q 047728          221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      ..+..++|.+....|+.+. ..+.|..+++........+.........+++.+.+  ++++-...+.|.+.++.....  
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--
Confidence            3578999998666666554 66889999987655433333333456788888644  555656678899998763321  


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEc-CC-CcEEEeecCcccccceee-eecceeeEEEEecCCEEEEEe-CCCc
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGS-SD-GLVNFWERELNLSHGGVL-RGHKLAILCLVTAGNLVFSGS-ADMS  373 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d-g~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sgs-~dg~  373 (474)
                          .......-.....++++|.+..|+... .. +.|..++++......... ......-+++++++..|+.+. ..+.
T Consensus       151 ----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          151 ----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             ----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence                111222335678999999666555544 34 678888876543221111 112234477887666665554 5678


Q ss_pred             EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |..+|+.......  .+.........+++ ..+.        ++++-...+.|..++..++
T Consensus       227 I~~~~~dG~~~~~--~~~~~~~~P~giav-~~~~--------ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          227 IERANLDGSHRKA--VISQGLPHPFAITV-FEDS--------LYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEEEETTSCSCEE--EECSSCSSEEEEEE-ETTE--------EEEEETTTTEEEEEETTTC
T ss_pred             EEEEeCCCCceEE--EEeCCCCCceEEEE-ECCE--------EEEecCCCCeEEEEEccCC
Confidence            9999987654321  22223445678888 3444        6666667777877774444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.32  E-value=1.5e-05  Score=81.17  Aligned_cols=198  Identities=10%  Similarity=0.059  Sum_probs=106.1

Q ss_pred             eeEEEecCCCCEEEEEEC-CCcEEEEEcCCcceeeeeeecCc-ceeEEEecCCC-eEEEee-CC-----CcEEEEEcccC
Q 047728          223 ISSLSMSEDQNLLYSASW-DKTFKVWRTSDYKCLESVIAHDD-AVNSIVAGFDG-LVFTGS-AD-----GTVKVWRRELQ  293 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~-~l~~~~-~d-----g~i~iwd~~~~  293 (474)
                      ..++++..++++++.|+. +..+.+||..+.+-...-..+.. .-.+++..+++ +++.|+ .+     ..+.+||....
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            445677788999999884 46899999887654332222221 22344555577 677777 34     46899998643


Q ss_pred             CCceeeeee---eeeecccccEEEEEEcCCCCEEEEEcCCC---------cEEEeecCcccccceeeeecc---------
Q 047728          294 GKGTKHFFS---QTLLKQECAVTALAISPDAAIVYCGSSDG---------LVNFWERELNLSHGGVLRGHK---------  352 (474)
Q Consensus       294 ~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---------~i~v~d~~~~~~~~~~~~~~~---------  352 (474)
                      .-  .....   ........   ...+..++..++.++.+|         .+..||..+..... ......         
T Consensus       325 ~W--~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~  398 (656)
T 1k3i_A          325 TW--TSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDA  398 (656)
T ss_dssp             EE--EEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCC
T ss_pred             cc--eeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCC
Confidence            21  10000   00000000   011223445555554443         46778876654221 111111         


Q ss_pred             --eeeEEEE-ecCCEEEEEeCCC-----------cEEEEECCCCceEEEEeecCCccc-eEEEEEeeCCccccccceEEE
Q 047728          353 --LAILCLV-TAGNLVFSGSADM-----------SICIWRRKENEHICLSMLTGHSGP-VKCLAVEKDDESLSREKRWIL  417 (474)
Q Consensus       353 --~~v~~~~-~~~~~l~sgs~dg-----------~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~~~~~~~l  417 (474)
                        ...+.+. .++++++.|+.++           .|.+||..+.....+..-...... -.+++..|+++        ++
T Consensus       399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~--------i~  470 (656)
T 1k3i_A          399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS--------TF  470 (656)
T ss_dssp             BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC--------EE
T ss_pred             CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC--------EE
Confidence              1122222 3677888887543           688888887764422200112222 23455677888        88


Q ss_pred             EEecCC-----------CcEEEEEccCC
Q 047728          418 YSGSLD-----------KSVKMWRVSEQ  434 (474)
Q Consensus       418 ~s~s~D-----------g~i~vw~~~~~  434 (474)
                      +.|+.+           ..+.+||..+.
T Consensus       471 v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          471 ITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             EECCcccCcCcCCCCcccceEEEcCCCC
Confidence            888754           46899998764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.32  E-value=0.001  Score=60.44  Aligned_cols=182  Identities=12%  Similarity=0.008  Sum_probs=102.0

Q ss_pred             CeeEEEecCCCCEEEEEECCC--cEEEEEcCCcceeeeeee-cCcceeEEEecCCCeEEEe-eCCCcEEEEEcccCCCce
Q 047728          222 AISSLSMSEDQNLLYSASWDK--TFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDGLVFTG-SADGTVKVWRRELQGKGT  297 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~  297 (474)
                      ....+++.++++++++.....  .|..+|..+++....... .......++..+++.+++. ..++.|..+|...... .
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~  151 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-S  151 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-E
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-e
Confidence            366889999998665554332  477778777765432221 1223345555556644444 4588888888653210 0


Q ss_pred             eeeeee-----eeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCc-ccc-cceee-eecceeeEEEEecCCEEEEE
Q 047728          298 KHFFSQ-----TLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWEREL-NLS-HGGVL-RGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       298 ~~~~~~-----~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~-~~~-~~~~~-~~~~~~v~~~~~~~~~l~sg  368 (474)
                      ......     .....-.....+  +++++.|+++ ...+.|..|++.. +.. ....+ ......-+++.++|+++++.
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence            000000     000111234455  7788766555 4567899999874 211 11111 11123347788889887777


Q ss_pred             eCCCcEEEEECCCCceEEEEeecCCccceEEEEEe---eCCc
Q 047728          369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE---KDDE  407 (474)
Q Consensus       369 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~  407 (474)
                      ...+.|.++|.. ++...+..+.......++++|.   |++.
T Consensus       230 ~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          230 HIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             BTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             CCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCC
Confidence            778899999976 4432232333333568999998   7766

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.30  E-value=0.00071  Score=59.27  Aligned_cols=201  Identities=12%  Similarity=0.032  Sum_probs=124.2

Q ss_pred             eccCCeeEEEecCCCCEEEE-EECCCcEEEEEcCCcceeeeeeec-CcceeEEEecCCCeE-EEeeCCCcEEEEEcccCC
Q 047728          218 KHFDAISSLSMSEDQNLLYS-ASWDKTFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLV-FTGSADGTVKVWRRELQG  294 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l-~~~~~dg~i~iwd~~~~~  294 (474)
                      +-...+..++|+|+++.|++ ...++.|...|.. ++.+..+... ......|++.+++.+ ++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            34567999999997766654 6678889999987 8877776432 246778888888844 444466788898876544


Q ss_pred             Cceeeeeee-e--eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc--cccceeee---------ecceeeEEEEe
Q 047728          295 KGTKHFFSQ-T--LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLR---------GHKLAILCLVT  360 (474)
Q Consensus       295 ~~~~~~~~~-~--~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~---------~~~~~v~~~~~  360 (474)
                      ......... .  ..........++|+|.++.|+++.......+|..+..  ........         -.....+++.+
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp  182 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ  182 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence            311111111 1  1234556799999999988887776655556555410  00011111         11223455666


Q ss_pred             c-CCEEEEEeCCCcEEEEECCCCceEEEEeec-CCc------cceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728          361 A-GNLVFSGSADMSICIWRRKENEHICLSMLT-GHS------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW  429 (474)
Q Consensus       361 ~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw  429 (474)
                      . +.+++.......+.++|.... ......+. +..      ..--.|+|.+++.        +.++ ++-+.+.++
T Consensus       183 ~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~--------lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          183 QKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN--------IYIV-SEPNRFYRF  249 (255)
T ss_dssp             TTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC--------EEEE-ETTTEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC--------EEEE-cCCceEEEE
Confidence            4 556666777788999998755 33344444 221      2568999999997        4444 566644444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.27  E-value=0.0012  Score=60.06  Aligned_cols=236  Identities=11%  Similarity=0.063  Sum_probs=122.2

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEe-C-CC-eEE
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGH-Q-DG-KIR  171 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~-~-dg-~i~  171 (474)
                      .+.+.+..+... .....++++  |+++++-..++.|..||.................+++. ...|+.+. . ++ .|.
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            344555555322 335556664  77777776788999998554333332334567888887 22344444 2 22 355


Q ss_pred             EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728          172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD  251 (474)
Q Consensus       172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~  251 (474)
                      .++..+++.......   +                            .......++..+++..+++-..++.|.++|..+
T Consensus        99 ~~d~~~g~~~~~~~~---~----------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           99 SLVKSDGTVETLLTL---P----------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             EEECTTSCEEEEEEC---T----------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEcCCCCeEEEEEeC---C----------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence            555555543211110   0                            111123344444444444444578899999765


Q ss_pred             cce-eeeee---------ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728          252 YKC-LESVI---------AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP  319 (474)
Q Consensus       252 ~~~-~~~~~---------~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  319 (474)
                      ++. +....         ..-...+.+  ++++  ++++-...+.|..|++.........   ..+ ........+++++
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~---~~~-~~~~~P~gi~vd~  221 (306)
T 2p4o_A          148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP---EIF-VEQTNIDDFAFDV  221 (306)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC---EEE-EESCCCSSEEEBT
T ss_pred             CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc---EEE-eccCCCCCeEECC
Confidence            421 11000         111233455  6666  4555566788999998742111000   111 1113456789999


Q ss_pred             CCCEEEEEcCCCcEEEeecCcccccc-eeeee-cceeeEEEE---ecCCEEEEEeCC
Q 047728          320 DAAIVYCGSSDGLVNFWERELNLSHG-GVLRG-HKLAILCLV---TAGNLVFSGSAD  371 (474)
Q Consensus       320 ~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~-~~~~v~~~~---~~~~~l~sgs~d  371 (474)
                      +|+++++....+.|.++|........ ....+ .....+++.   ++++.|+..+..
T Consensus       222 dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          222 EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            99887777778899999976322111 11111 222334454   566666665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.25  E-value=0.00013  Score=63.59  Aligned_cols=191  Identities=9%  Similarity=0.114  Sum_probs=118.0

Q ss_pred             eeeeeeeeecCc--EEEEEEcCC-EEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEE-EeCCCeEEEEe
Q 047728          101 VLIGSLVREEGH--IYSLAAAGD-LLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFS-GHQDGKIRVWK  174 (474)
Q Consensus       101 ~~~~~l~~h~~~--i~~~~~~~~-~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s-~~~dg~i~vwd  174 (474)
                      +.++++ .|...  ...+.++++ +.++.+.+|.|+++|..  +.+........--..+++.++.|+. .-.++.+.+||
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred             EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence            455555 45433  567888866 45566778889999854  3333331111122446777665554 45788999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      ..+.+........                                 ..=..++  ++++.|+.+..++.|.++|..+.+.
T Consensus       123 ~~Tl~~~~ti~~~---------------------------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A          123 GMPPQRERTTRYS---------------------------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             TTTTEEEEEEECS---------------------------------SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE
T ss_pred             CCcCcEEEEEeCC---------------------------------CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE
Confidence            9988765443321                                 1112343  5677888877789999999999998


Q ss_pred             eeeeeec--Cc---ceeEEEecCCCeEEEee-CCCcEEEEEcccCCCceeeeeeee-------eecccccEEEEEEcCCC
Q 047728          255 LESVIAH--DD---AVNSIVAGFDGLVFTGS-ADGTVKVWRRELQGKGTKHFFSQT-------LLKQECAVTALAISPDA  321 (474)
Q Consensus       255 ~~~~~~~--~~---~v~~v~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~  321 (474)
                      +..+...  ..   .++.+.|. +|.+++.. .+..|.+.|.+++.......+...       ........+.|+++|++
T Consensus       168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~  246 (268)
T 3nok_A          168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS  246 (268)
T ss_dssp             EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred             EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence            8887642  22   34667776 66555544 578899999876553222211100       11123467899999976


Q ss_pred             CEEEEEc
Q 047728          322 AIVYCGS  328 (474)
Q Consensus       322 ~~l~~~~  328 (474)
                      +.|++.+
T Consensus       247 ~rlfVTG  253 (268)
T 3nok_A          247 GRIFMTG  253 (268)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEeC
Confidence            6555544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=0.0005  Score=65.87  Aligned_cols=197  Identities=7%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             cCCeeEEEecCCCCEEEEEECC-C----cEEEEEcCCccee--eeeeecCcceeEEEecC-CCe-EEEeeCCCcEEEEEc
Q 047728          220 FDAISSLSMSEDQNLLYSASWD-K----TFKVWRTSDYKCL--ESVIAHDDAVNSIVAGF-DGL-VFTGSADGTVKVWRR  290 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~d-g----~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~-~~~-l~~~~~dg~i~iwd~  290 (474)
                      ......|+|++++++|+.+... +    .+.+++ ..+...  ..+.. ......+++.| ++. +++-..++.|..++.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            3457799999999977766542 1    233344 333322  23322 34467888999 664 445556788999987


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecCcc--cc-cceeeeec---------------
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWERELN--LS-HGGVLRGH---------------  351 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~~~--~~-~~~~~~~~---------------  351 (474)
                      .....  .   .............++|+|++++|++ -...+.|..++.+..  .. ....+.+.               
T Consensus       256 ~~~~~--~---~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  330 (430)
T 3tc9_A          256 TTQET--T---PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR  330 (430)
T ss_dssp             TTTEE--E---EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred             CCCcE--E---EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence            63211  0   1111122245778999999995554 456778999876532  10 00111110               


Q ss_pred             ---ceeeEEEE--------ecCCEEEEEeCCCcEEEEECCCCceEEEEee-----cC----------CccceEEEEEeeC
Q 047728          352 ---KLAILCLV--------TAGNLVFSGSADMSICIWRRKENEHICLSML-----TG----------HSGPVKCLAVEKD  405 (474)
Q Consensus       352 ---~~~v~~~~--------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----~~----------h~~~v~~l~~~~~  405 (474)
                         ....+++.        .++.+.++=...+.|+.++. .+....+.-.     .+          .-.....|++.++
T Consensus       331 ~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  409 (430)
T 3tc9_A          331 MHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE  409 (430)
T ss_dssp             BSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred             eCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence               01123332        22445555556678888884 3432211111     01          0114688999984


Q ss_pred             -CccccccceEEEEEecCCCcEEEEEcc
Q 047728          406 -DESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       406 -~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                       +.        ++++-.....|+.++++
T Consensus       410 ~g~--------lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          410 REC--------FFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTE--------EEEEEGGGTEEEEEEEC
T ss_pred             CCE--------EEEEECCCCeEEEEccC
Confidence             55        66666667788887764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.22  E-value=0.0031  Score=57.56  Aligned_cols=200  Identities=10%  Similarity=0.037  Sum_probs=118.3

Q ss_pred             cCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC---cceeee-eeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEccc
Q 047728          220 FDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD---YKCLES-VIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~---~~~~~~-~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~  292 (474)
                      ...+..++|.+.++.|+.+. .++.|..+++..   +..... +...-.....+++.+. + ++++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34577999998766666554 568899999875   122222 2222245678888754 4 445556678899998763


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC--CcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEE
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD--GLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg  368 (474)
                      ...      .............++++|.+..|+.+...  +.|..++++..... .+..  .....-+++++++..|+.+
T Consensus       109 ~~~------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          109 VKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             SSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             Cce------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEECCCCCceEEEEeccCCEEEEE
Confidence            211      11112233567899999976666555443  67888887643221 1111  1223347777776666655


Q ss_pred             e-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          369 S-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       369 s-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      . ..+.|..+|+.......+............+++. .+.        ++++-...+.|..++..++.
T Consensus       182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~--------ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK--------VFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTE--------EEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCE--------EEEEECCCCeEEEEeCCCCc
Confidence            5 5679999999765433222222223345778875 344        66676777888888865543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.20  E-value=0.00036  Score=60.86  Aligned_cols=181  Identities=12%  Similarity=0.054  Sum_probs=109.9

Q ss_pred             EEEEEecCCEE-EEEeCCC--eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728          151 VKAIVISNEKI-FSGHQDG--KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS  227 (474)
Q Consensus       151 V~~i~~~~~~l-~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  227 (474)
                      ...+.|+++.| .+.+.+|  .|+++|+.+++........                                 .......
T Consensus        45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------------------------~~~FgeG   91 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------------------------KRYFGEG   91 (262)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------------------------------TTCCEEE
T ss_pred             cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecC---------------------------------CccceeE
Confidence            46777775544 4555655  8999999998765443321                                 1121211


Q ss_pred             ecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728          228 MSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL  305 (474)
Q Consensus       228 ~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (474)
                      +.++++.|+... .++.+.+||..+.+.+.++.... .-..++  +++ .|+....++.|.++|..+.+....  .....
T Consensus        92 it~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~--I~V~~  166 (262)
T 3nol_A           92 ISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRT--ITVTA  166 (262)
T ss_dssp             EEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEE--EECEE
T ss_pred             EEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEE--EEecc
Confidence            223355666655 57899999999999999987533 223444  345 666666678899999876543111  11111


Q ss_pred             eccc-ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-------------cceeeEEEEecCCEEEEEeC
Q 047728          306 LKQE-CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-------------HKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       306 ~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~l~sgs~  370 (474)
                      .+.. ..++.+.|. +|...+..-.+..|.+.|.++++....+...             ....-+++.++++.|+..+.
T Consensus       167 ~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          167 HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            1111 334557776 6766665657889999999888665443221             11133777777777776664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.18  E-value=0.0049  Score=58.32  Aligned_cols=201  Identities=10%  Similarity=0.026  Sum_probs=121.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~  291 (474)
                      ....+..|+|++.+..|+.+. ..+.|+.+++...    .....+.........+++.+. + ++++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345678999998666666654 5678888888652    222222223445678888863 4 55555667888888876


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFS  367 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s  367 (474)
                      ....      .............|+++|.+..|+....  .+.|...+++..... .+...  ....-+++++++..|+.
T Consensus       190 g~~~------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~~~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          190 GVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             TCSE------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCce------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEEECCCCceEEEEEEeCCCEEEE
Confidence            3221      1112223445789999997666665543  367888888754332 12111  22344777776776666


Q ss_pred             Ee-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          368 GS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       368 gs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      +. ..+.|..+|+.......+...........+|++. .+.        ++++-...+.|..++..+++
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~--------lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK--------VFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTE--------EEEEESSSCSEEEEESSSCC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCE--------EEEecCCCCeEEEEEcCCCC
Confidence            65 5678999999765533232222223445677773 333        66677777888888865553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.15  E-value=0.0046  Score=56.76  Aligned_cols=268  Identities=7%  Similarity=0.013  Sum_probs=135.2

Q ss_pred             cCcEEEEEEc--CCEEEEeeCCCcEEEEe-CCcccccc----ccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcce
Q 047728          110 EGHIYSLAAA--GDLLYTGSDSKNIRVWK-NQREFSGF----KSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd-~~~~~~~~----~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~  182 (474)
                      ...+.++.+.  +..++ ++..|.|.... -++.-...    ......+.+|.+.++.++.++.+|.|.. ..+.++. .
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~t-W  111 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQS-W  111 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSS-C
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCC-c
Confidence            3468888885  45566 45577654332 22211111    1234468888888766666677774433 2232221 1


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee-eec
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV-IAH  261 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~  261 (474)
                      ......                            ..+...+..+.+.+++..++ ++.++.|.. ....++.-..+ ...
T Consensus       112 ~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~~  161 (327)
T 2xbg_A          112 SQIPLD----------------------------PKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDSGKNWQALVQEA  161 (327)
T ss_dssp             EECCCC----------------------------TTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESSTTSSEEEEECSC
T ss_pred             eECccc----------------------------cCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCCCCCCEEeecCC
Confidence            110000                            00223356677666665554 445665432 12223322222 234


Q ss_pred             CcceeEEEecCCCeEEEeeCCCcEEE-EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728          262 DDAVNSIVAGFDGLVFTGSADGTVKV-WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       262 ~~~v~~v~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~  340 (474)
                      ...+..+.+.+++.+++.+.+|.+.. +|-  ......    .........+..+.+.+++..+++ +.+|.+++.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~----~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~  234 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWE----PHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN  234 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCE----EEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCcee----ECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCC
Confidence            45788899998885555555665443 221  011111    111234567889999998876654 4678777764222


Q ss_pred             ccccceeeee---cceeeEEEE--ecCCEEEEEeCCCcEEEEECCCCceEEEEeec---CCccceEEEEEeeCCcccccc
Q 047728          341 NLSHGGVLRG---HKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLT---GHSGPVKCLAVEKDDESLSRE  412 (474)
Q Consensus       341 ~~~~~~~~~~---~~~~v~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~  412 (474)
                      +........+   ....+.++.  +++.+++++ .+|.| ++..+.++.-  ..+.   .....+.++.|.+++.     
T Consensus       235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~v~~~~~~~-----  305 (327)
T 2xbg_A          235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTW--QQDVDVKKVPSNFYKILFFSPDQ-----  305 (327)
T ss_dssp             EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSC--EECGGGTTSSSCCCEEEEEETTE-----
T ss_pred             CCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCccc--EEcCccCCCCCCeEEEEEECCCc-----
Confidence            2211111111   112344444  345555554 46766 4445544321  1222   2345688899986654     


Q ss_pred             ceEEEEEecCCCcEEEEE
Q 047728          413 KRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       413 ~~~~l~s~s~Dg~i~vw~  430 (474)
                          ++.++.+|.|.-++
T Consensus       306 ----~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          306 ----GFILGQKGILLRYV  319 (327)
T ss_dssp             ----EEEECSTTEEEEEC
T ss_pred             ----eEEEcCCceEEEEc
Confidence                66667789766554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.11  E-value=0.00034  Score=72.28  Aligned_cols=193  Identities=15%  Similarity=0.096  Sum_probs=108.6

Q ss_pred             CeeEEEec-CCCCEEEEEEC-CC----cEEEEEcCCc-ceeee-eeecCcceeEEEecCCC-eEEEeeCC-----CcEEE
Q 047728          222 AISSLSMS-EDQNLLYSASW-DK----TFKVWRTSDY-KCLES-VIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKV  287 (474)
Q Consensus       222 ~V~~l~~~-~~~~~l~s~s~-dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~i  287 (474)
                      .+...+|+ |||++|+-+.. +|    +|+++|+.++ +.+.. +.   .....+.|+||+ .|+....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99998875543 33    4999999998 63321 21   124568899998 55555554     24666


Q ss_pred             EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCcccc-c--ceeeeecceeeEEEE-e
Q 047728          288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNLS-H--GGVLRGHKLAILCLV-T  360 (474)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~-~--~~~~~~~~~~v~~~~-~  360 (474)
                      +++........  .... .........+.|+||+++|+....   ...|.++|+.++.. .  ..+............ .
T Consensus       252 ~~lgt~~~~~~--lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          252 HVMGKLQSEDV--CLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EETTSCGGGCE--EEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             EECCCCchhcE--EEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            66654321111  1111 122334678899999998887653   34688888876521 1  222222333334443 3


Q ss_pred             cCCEEEEEe-CC----CcEEEEECCC-CceEEEEe-ecCCcc--ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          361 AGNLVFSGS-AD----MSICIWRRKE-NEHICLSM-LTGHSG--PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       361 ~~~~l~sgs-~d----g~i~iwd~~~-~~~~~~~~-~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      .++.|+..+ .+    ..|..+|+.+ .+..   . +..+..  .+..+.+.  +..       ++++...|+..+||-+
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~---~~li~~~~~~~l~~~~~~--~~~-------lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWS---HVLVDHSEDVFMESIAVR--SNY-------LVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCC---CEEECCCSSEEEEEEEEC--SSE-------EEEEEEETTEEEEEEE
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccce---eeEECCCCCcEEEEEEEE--CCE-------EEEEEEeCCEEEEEEE
Confidence            366555444 33    3566777764 2211   2 222333  34455554  332       6778888887666654


Q ss_pred             c
Q 047728          432 S  432 (474)
Q Consensus       432 ~  432 (474)
                      .
T Consensus       397 d  397 (751)
T 2xe4_A          397 M  397 (751)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.09  E-value=0.0058  Score=56.63  Aligned_cols=213  Identities=11%  Similarity=0.031  Sum_probs=117.6

Q ss_pred             cEEEEeCCc-cccccccCccCEEEEEec--CCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeE
Q 047728          131 NIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYI  206 (474)
Q Consensus       131 ~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (474)
                      .|+..+... ....+........+++|+  ++.|+.+ ...+.|..++++........                      
T Consensus        54 ~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~----------------------  111 (349)
T 3v64_C           54 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV----------------------  111 (349)
T ss_dssp             CEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------------------
T ss_pred             ceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE----------------------
Confidence            466665432 222222233457788887  4555544 46678888888765422110                      


Q ss_pred             EEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCC-
Q 047728          207 EVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSAD-  282 (474)
Q Consensus       207 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~d-  282 (474)
                                .........+++.+.+..|+ +-...+.|.+.++........+...-.....+++.|.+ .| ++-... 
T Consensus       112 ----------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~  181 (349)
T 3v64_C          112 ----------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT  181 (349)
T ss_dssp             ----------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred             ----------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence                      00123456888887555554 44456789999986543333333333567899999854 44 444444 


Q ss_pred             CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecce--eeEEEE
Q 047728          283 GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHKL--AILCLV  359 (474)
Q Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~--~v~~~~  359 (474)
                      +.|..+++.....      .......-.....|+++|++..|+.+ ...+.|..+|++..... .+......  .-+++ 
T Consensus       182 ~~I~r~~~dG~~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav-  253 (349)
T 3v64_C          182 PRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGLPHPFAITV-  253 (349)
T ss_dssp             CEEEEEETTSCSC------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEE-
T ss_pred             CEEEEEeCCCCCc------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCCCCceEEEE-
Confidence            6777777653221      11111233457899999876666655 45678999998754321 12211111  12333 


Q ss_pred             ecCCEEEEEeCCCcEEEEECCCCc
Q 047728          360 TAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       360 ~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ..+.++++-...+.|..++..+++
T Consensus       254 ~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          254 FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCEEEEecCCCCeEEEEEccCCC
Confidence            334444555566778877754444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.02  E-value=0.0035  Score=54.83  Aligned_cols=201  Identities=8%  Similarity=0.053  Sum_probs=115.7

Q ss_pred             cCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728          146 SNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA  222 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  222 (474)
                      +-...+..++++  ++.|+ +...++.|...|.. ++........                               -...
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-------------------------------g~~D   71 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-------------------------------FVKD   71 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-------------------------------SCSS
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-------------------------------CCCC
Confidence            344568888887  34444 46677777777776 4433222111                               1134


Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCccee---eeee------ecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL---ESVI------AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL  292 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~------~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~  292 (474)
                      ...|++.+++.++++.-.++.+.++++.....+   ....      ........+++.+++ .|+++.......+|.+..
T Consensus        72 ~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g  151 (255)
T 3qqz_A           72 LETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG  151 (255)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             hHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc
Confidence            667888888776666556778888887654322   2221      123345899999988 777777766667776651


Q ss_pred             CCCceeeeeeee----eecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeee-ec--------ceeeEEE
Q 047728          293 QGKGTKHFFSQT----LLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLR-GH--------KLAILCL  358 (474)
Q Consensus       293 ~~~~~~~~~~~~----~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~--------~~~v~~~  358 (474)
                      ............    .......+..++++|. +++++.......+.++|..........+. +.        ...-+++
T Consensus       152 ~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~  231 (255)
T 3qqz_A          152 LLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAM  231 (255)
T ss_dssp             TTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred             cccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEE
Confidence            111000011100    0112345789999995 45566666777888899775522211222 11        3345888


Q ss_pred             EecCCEEEEEeCCCcEEEEEC
Q 047728          359 VTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       359 ~~~~~~l~sgs~dg~i~iwd~  379 (474)
                      .++|++.++ ++-+.++.|..
T Consensus       232 d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          232 DASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CTTCCEEEE-ETTTEEEEEEC
T ss_pred             CCCCCEEEE-cCCceEEEEEe
Confidence            888985544 66666666644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.01  E-value=0.0054  Score=57.72  Aligned_cols=222  Identities=11%  Similarity=0.025  Sum_probs=122.1

Q ss_pred             EEEEeeCCCcEEEEeCCc-cccccccCccCEEEEEec--CCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          122 LLYTGSDSKNIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      +|+.+. ...|+..+... ....+.........++|+  ++.|+.+ ...+.|..++++........             
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------  154 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------  154 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-------------
T ss_pred             eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-------------
Confidence            444443 34577777542 233333334557888887  4555544 46678888888765421110             


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE-EECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS-ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L  275 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~  275 (474)
                                         .........+++.+.+..|+. -...+.|.+.++........+...-.....+++.|.+ .
T Consensus       155 -------------------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          155 -------------------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             -------------------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             -------------------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence                               001223457888875555544 4456788888876543333333333567899999865 4


Q ss_pred             EEEee-CC-CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecc
Q 047728          276 VFTGS-AD-GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHK  352 (474)
Q Consensus       276 l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~  352 (474)
                      |+... .. +.|..+++.....      .......-.....|+++|++..|+.+ ...+.|..+|+...... .+.....
T Consensus       216 ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~  288 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGL  288 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEECSSC
T ss_pred             EEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEECCC
Confidence            44443 33 6677777653221      11111223457899999866666555 45678999998754322 1221111


Q ss_pred             eeeEEEE-ecCCEEEEEeCCCcEEEEECCCCc
Q 047728          353 LAILCLV-TAGNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       353 ~~v~~~~-~~~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ..-..+. ..+.++++-...+.|..++..+++
T Consensus       289 ~~P~giav~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          289 PHPFAITVFEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence            1122222 344455555567788888855554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.01  E-value=0.0025  Score=55.01  Aligned_cols=182  Identities=5%  Similarity=-0.041  Sum_probs=108.3

Q ss_pred             cCEEEEEecCCEEEEE-eCC--CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          149 GLVKAIVISNEKIFSG-HQD--GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       149 ~~V~~i~~~~~~l~s~-~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      .-...+.|+++.|+.+ +.+  ..|+++|+.+++..........                               .--..
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------------------------------~fgeG   69 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------------------------------YFGAG   69 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------------------------------CCEEE
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------------------------------cceeE
Confidence            4467888886655544 443  3899999999877644432210                               00112


Q ss_pred             EEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728          226 LSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ  303 (474)
Q Consensus       226 l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  303 (474)
                      +++  .++.|+.. -.++.+.+||..+.+.+.++..... -..++.  ++ .|+.+..++.|.++|..+.......  ..
T Consensus        70 i~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I--~V  142 (243)
T 3mbr_X           70 IVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSI--KV  142 (243)
T ss_dssp             EEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEE--EC
T ss_pred             EEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEE--EE
Confidence            333  34455544 4678999999999999999875433 345553  44 6666667889999998765431111  11


Q ss_pred             eeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--------------cceeeEEEEecCCEEEEE
Q 047728          304 TLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--------------HKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       304 ~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~l~sg  368 (474)
                      ...+ .-..++.+.+. ++..++..-.+..|.+.|.++++....+...              .-..-+++.++++.|+..
T Consensus       143 ~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT  221 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT  221 (243)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred             ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence            1111 11235566665 6666655556789999999888665443321              011236666766666655


Q ss_pred             e
Q 047728          369 S  369 (474)
Q Consensus       369 s  369 (474)
                      +
T Consensus       222 G  222 (243)
T 3mbr_X          222 G  222 (243)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.99  E-value=0.002  Score=58.68  Aligned_cols=195  Identities=11%  Similarity=0.152  Sum_probs=116.0

Q ss_pred             CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC----C----eEEEeeC---CCcEEEEEcccCCCceee
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD----G----LVFTGSA---DGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~----~----~l~~~~~---dg~i~iwd~~~~~~~~~~  299 (474)
                      ...+++.....+-+.+||+ +++.+..+..  +.++.+..-|+    +    ++++...   +++|.+|++.........
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4466776777888999999 8888888753  45666665542    2    2233333   578999987422221110


Q ss_pred             eeee--eeecccccEEEEEE--cCC-CC-EEEEEcCCCcEEEeecCc-------ccccceeeeecceeeEEEEecCCEEE
Q 047728          300 FFSQ--TLLKQECAVTALAI--SPD-AA-IVYCGSSDGLVNFWEREL-------NLSHGGVLRGHKLAILCLVTAGNLVF  366 (474)
Q Consensus       300 ~~~~--~~~~~~~~v~~l~~--~~~-~~-~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~~v~~~~~~~~~l~  366 (474)
                      ....  ........+..+|+  +|. +. ++++...+|.+..|++..       .+.+..+..+....-+.+.+....|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            0000  01111155667777  774 43 688888999999998842       12222233333344455556688999


Q ss_pred             EEeCCCcEEEEECCCC---ceEEEEeec-CC-ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728          367 SGSADMSICIWRRKEN---EHICLSMLT-GH-SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~---~~~~~~~~~-~h-~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                      .+-++.-|..++.+..   ....+..+. ++ ...+..|++.+...    ...++|+++-.+.++.+|+..
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~----g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD----GKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG----GCEEEEEEEGGGTEEEEEESS
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC----CCEEEEEEcCCCCEEEEEECC
Confidence            9999977777775421   122333332 22 24688898865432    122367777678899999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.98  E-value=0.0046  Score=59.14  Aligned_cols=231  Identities=7%  Similarity=0.060  Sum_probs=125.0

Q ss_pred             EEEEEecC----CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728          151 VKAIVISN----EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL  226 (474)
Q Consensus       151 V~~i~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  226 (474)
                      ...|+++.    ..|+.+...+.|+.++..++.....                                 .........+
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---------------------------------~~~~~~P~gi  187 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---------------------------------TTNIGQCADV  187 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE---------------------------------CCCCSCEEEE
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe---------------------------------ecCCCCccEE
Confidence            45677763    5666665556777777765533211                                 1133457899


Q ss_pred             EecCCCCEEEEEECCC----c-EEEEEcCCcce-eeeeeecCcceeEEEecC-CCeEE-EeeCCCcEEEEEcccCCCcee
Q 047728          227 SMSEDQNLLYSASWDK----T-FKVWRTSDYKC-LESVIAHDDAVNSIVAGF-DGLVF-TGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       227 ~~~~~~~~l~s~s~dg----~-i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~-~~~l~-~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      +++++++ |+.+...+    . +...+...+.. ...+. .......+++.+ ++.|+ +-..++.|+.+|...+.....
T Consensus       188 avd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~  265 (433)
T 4hw6_A          188 NFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE  265 (433)
T ss_dssp             EECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE
T ss_pred             EECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE
Confidence            9999999 55554322    1 33333221111 01222 234457788898 66555 444567888888763321010


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCc--cccc-ceeeeec-----------------ceeeEE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWEREL--NLSH-GGVLRGH-----------------KLAILC  357 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~~-~~~~~~~-----------------~~~v~~  357 (474)
                        . . ..........++|+|+++.|+++ ...+.|..++...  +... ...+.+.                 ...-++
T Consensus       266 --~-~-~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia  341 (433)
T 4hw6_A          266 --E-V-MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI  341 (433)
T ss_dssp             --E-E-ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred             --E-e-ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence              0 0 11112223469999999955554 4567899977652  2110 0111111                 011255


Q ss_pred             E---------EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC------------------ccceEEEEEe-eCCccc
Q 047728          358 L---------VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH------------------SGPVKCLAVE-KDDESL  409 (474)
Q Consensus       358 ~---------~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h------------------~~~v~~l~~~-~~~~~~  409 (474)
                      +         ..++.++++-...+.|+.++. .+..   ..+.+.                  -.....|++. +++.  
T Consensus       342 v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v---~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~--  415 (433)
T 4hw6_A          342 FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV---TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC--  415 (433)
T ss_dssp             EEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE---EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE--
T ss_pred             EEccccccccCCCCcEEEEECCCCEEEEECC-CCCE---EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE--
Confidence            5         445566666666788988885 3432   222211                  1236788998 5665  


Q ss_pred             cccceEEEEEecCCCcEEEEEcc
Q 047728          410 SREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                            ++++-...++|+.++++
T Consensus       416 ------lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          416 ------FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ------EEEEEGGGTEEEEEEEC
T ss_pred             ------EEEEeCCCCEEEEEecC
Confidence                  66666667788887764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.97  E-value=0.0094  Score=54.66  Aligned_cols=229  Identities=9%  Similarity=0.045  Sum_probs=116.4

Q ss_pred             CcEEEEEEcCCEEEEeeCCCcEEEEe-CCccccccc---cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          111 GHIYSLAAAGDLLYTGSDSKNIRVWK-NQREFSGFK---SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       111 ~~i~~~~~~~~~l~tgs~dg~v~vwd-~~~~~~~~~---~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      ..+.++.++++.++.++.+|.|..-+ -++.-....   .+.+.+..|.+. ++.++.++.+|.|  |....+-......
T Consensus        80 ~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~  157 (327)
T 2xbg_A           80 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQAL  157 (327)
T ss_dssp             CEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEE
T ss_pred             ccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEe
Confidence            35777777755555555667554432 222211111   233456777764 5555555566643  3222211111110


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE-EEc--CCcceeeeeeecC
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV-WRT--SDYKCLESVIAHD  262 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i-wd~--~~~~~~~~~~~~~  262 (474)
                      .                              ......+..+++.+++.+++.+ .++.+.. +|-  .+.+.+.  ....
T Consensus       158 ~------------------------------~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~  204 (327)
T 2xbg_A          158 V------------------------------QEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTS  204 (327)
T ss_dssp             E------------------------------CSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSS
T ss_pred             e------------------------------cCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECC--CCCC
Confidence            0                              0133467889999988777655 4555544 332  2222221  2345


Q ss_pred             cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728          263 DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       263 ~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                      ..+..+.+.+++.++.++.+|.+++.+...+.   ........ ......+..+++.+++..++++. ++.|. +..+.+
T Consensus       205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~---tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG  279 (327)
T 2xbg_A          205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE---NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGG  279 (327)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEETTEEE---EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTT
T ss_pred             CccceeEECCCCCEEEEeCCceEEEecCCCCC---eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCC
Confidence            67788888888866777778887776421111   00001100 11234588999998887777655 56663 333333


Q ss_pred             cccceeee--ecceeeEEEEe-cCCEEEEEeCCCcEEEEEC
Q 047728          342 LSHGGVLR--GHKLAILCLVT-AGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       342 ~~~~~~~~--~~~~~v~~~~~-~~~~l~sgs~dg~i~iwd~  379 (474)
                      ..-.....  .....+.++.+ +...+++++.+|.|.-++-
T Consensus       280 ~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          280 QTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             SSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             cccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            22211111  11122333333 4556777778898776654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.93  E-value=0.016  Score=59.66  Aligned_cols=200  Identities=10%  Similarity=0.014  Sum_probs=117.6

Q ss_pred             ccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~  291 (474)
                      ....+..|+|.+....|+.+ ...+.|+.+++...    .....+.........|++.+.+  ++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            34567789999865555554 45677888888653    2222333234556788888665  55566667889999886


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFS  367 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s  367 (474)
                      ....      .............|+++|....|+....  .+.|...++...... .+...  ....-+++.+.+..|+.
T Consensus       502 G~~~------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          502 GVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCeE------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCCCCCceEEEEecCCCeEEE
Confidence            3221      1112233445889999997666666543  267888888754332 22221  22334667766666666


Q ss_pred             Ee-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          368 GS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       368 gs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +. ..+.|..+++.......+..-...-....+|++..+ .        ++++-...+.|...+..++
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~--------lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K--------VFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-E--------EEEEETTTTEEEEEETTTC
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-E--------EEEEECCCCEEEEEeCCCC
Confidence            54 457899999876654323222122233456776433 3        5566666677777775555

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.90  E-value=0.003  Score=57.05  Aligned_cols=205  Identities=11%  Similarity=0.106  Sum_probs=118.4

Q ss_pred             EEEEec--CCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          152 KAIVIS--NEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       152 ~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      .++.|+  ...++.++ ..++|..|+...+..... .+..+....                        .....+..|.|
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g------------------------~~~~~~sGl~~   70 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG------------------------DGEQQMSGLSL   70 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS------------------------CCSEEEEEEEE
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC------------------------CCcceeeEEEE
Confidence            356776  35666666 789999999875432211 111000000                        01113478899


Q ss_pred             ---cCCCCEEEEEE-------------CCCcEEEEEcC---Ccceeeeeee--cC-----------cceeEEEecCCC-e
Q 047728          229 ---SEDQNLLYSAS-------------WDKTFKVWRTS---DYKCLESVIA--HD-----------DAVNSIVAGFDG-L  275 (474)
Q Consensus       229 ---~~~~~~l~s~s-------------~dg~i~iwd~~---~~~~~~~~~~--~~-----------~~v~~v~~~~~~-~  275 (474)
                         .|++.++++..             .+..|..+|+.   +++.+.....  ..           .....++..++| .
T Consensus        71 ~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna  150 (334)
T 2p9w_A           71 LTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS  150 (334)
T ss_dssp             SSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE
T ss_pred             eccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE
Confidence               57866666543             26779999998   7777665542  11           247899999999 6


Q ss_pred             EEEeeCC-CcEEEEEcccCCCceeeee-eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--e-
Q 047728          276 VFTGSAD-GTVKVWRRELQGKGTKHFF-SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--G-  350 (474)
Q Consensus       276 l~~~~~d-g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~-  350 (474)
                      .++++.- +.|..++..  ++...... ...........+.|+++|+++.|++....+.+..+|+...........  + 
T Consensus       151 YVt~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~  228 (334)
T 2p9w_A          151 YVAFALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGD  228 (334)
T ss_dssp             EEEEEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSC
T ss_pred             EEeCCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCC
Confidence            6667766 766655544  22111111 111112233477899999999999887799999999885422001111  1 


Q ss_pred             -----cceeeEEEEecCCE-EEEEeCCCcEEEEECCCCc
Q 047728          351 -----HKLAILCLVTAGNL-VFSGSADMSICIWRRKENE  383 (474)
Q Consensus       351 -----~~~~v~~~~~~~~~-l~sgs~dg~i~iwd~~~~~  383 (474)
                           ....++....+|+. +++....+.+.+.+.+..+
T Consensus       229 ~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          229 FGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             CCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred             cccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence                 11222334457777 4555566666676665543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.90  E-value=0.014  Score=53.29  Aligned_cols=196  Identities=10%  Similarity=0.029  Sum_probs=119.7

Q ss_pred             CeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceee-eeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCce
Q 047728          222 AISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLE-SVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      .+..++|.+.+..|+.+ ...+.|..+++....... .+...-.....+++.+. + ++++-...+.|.++++.....  
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--  113 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--  113 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence            46688999865555554 456889999987654222 22222345677888864 4 555556678899998763221  


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEEe-CCC
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGS-ADM  372 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs-~dg  372 (474)
                          .............++++|.+..|+....  .+.|..++++..... .+..  -....-+++++++..|+.+. ..+
T Consensus       114 ----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l~~Pnglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          114 ----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             ----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence                1111233456789999997666666553  578888887643221 1111  12234577887666665554 568


Q ss_pred             cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      .|..+|+.......+  ..+.......+++..+ .        ++++-...+.|..++..+++
T Consensus       189 ~I~~~d~dG~~~~~~--~~~~~~~P~glav~~~-~--------lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          189 FIHKSNLDGTNRQAV--VKGSLPHPFALTLFED-I--------LYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEEEETTSCSCEEE--ECSCCSCEEEEEEETT-E--------EEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEcCCCCceEEE--ecCCCCCceEEEEeCC-E--------EEEEecCCCeEEEEECCCCC
Confidence            899999876543222  2223445677777533 3        56666677888888876554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.88  E-value=0.019  Score=54.29  Aligned_cols=237  Identities=10%  Similarity=0.029  Sum_probs=130.2

Q ss_pred             CcEEEEeCCcc-ccccccCccCEEEEEec--CCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCe
Q 047728          130 KNIRVWKNQRE-FSGFKSNSGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY  205 (474)
Q Consensus       130 g~v~vwd~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (474)
                      ..|+..++... ...+......+.+|+|+  ++.|+.+. ..+.|+.++++.........                    
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~--------------------  151 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--------------------  151 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE--------------------
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce--------------------
Confidence            45666664422 22333345577888887  45555554 56778888876532100000                    


Q ss_pred             EEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC--
Q 047728          206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA--  281 (474)
Q Consensus       206 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~--  281 (474)
                              .+..........|++.+.+..|+ +-...+.|.+.++........+.........|++.|.+ .|+....  
T Consensus       152 --------~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          152 --------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             --------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred             --------EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence                    00011234567889988544554 44567889999987654444444344567899999854 5544432  


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeee--cceeeEEE
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRG--HKLAILCL  358 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~  358 (474)
                      .+.|...++.....  .    ......-.....|++++++..|+.+. ..+.|..+|++..... .+...  ....-..+
T Consensus       224 ~~~I~~~~~dG~~~--~----~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl  296 (400)
T 3p5b_L          224 PAKIKKGGLNGVDI--Y----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL  296 (400)
T ss_dssp             SCCEEEEETTSCSC--E----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEECSSTTSSEEEE
T ss_pred             CCEEEEEeCCCCcc--E----EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeCCCCCCCCEEE
Confidence            36788777753221  1    11122335688999999777776664 4678999998754322 22221  11222344


Q ss_pred             EecCC-EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728          359 VTAGN-LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE  403 (474)
Q Consensus       359 ~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~  403 (474)
                      ..++. ++++-...+.|..+|..+++..  ..+........++.+.
T Consensus       297 ~v~~~~lywtd~~~~~V~~~~~~~G~~~--~~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          297 AVFEDKVFWTDIINEAIFSANRLTGSDV--NLLAENLLSPEDMVLF  340 (400)
T ss_dssp             EEETTEEEEEESSSCSEEEEESSSCCCC--EEEECSCSCEEEEEEE
T ss_pred             EEeCCEEEEecCCCCeEEEEEcCCCCce--EEEecCCCCCceEEEE
Confidence            44444 4455556688988987666532  2333333334555443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.87  E-value=0.015  Score=55.97  Aligned_cols=201  Identities=11%  Similarity=0.063  Sum_probs=116.6

Q ss_pred             CCeeEEEe-------cCCCCEEEEEECCC-------cEEEEEcCC-ccee-----eeeeecCcceeEEEecCCC--eEEE
Q 047728          221 DAISSLSM-------SEDQNLLYSASWDK-------TFKVWRTSD-YKCL-----ESVIAHDDAVNSIVAGFDG--LVFT  278 (474)
Q Consensus       221 ~~V~~l~~-------~~~~~~l~s~s~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~v~~~~~~--~l~~  278 (474)
                      .....|+|       +++++.|+++...+       .|.+++... +...     ..+.. -.....++++|++  ++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEE
Confidence            45789999       99999777776654       266666433 2322     22322 2244678889954  5556


Q ss_pred             eeCCCcEEEEEcc-------cCCCcee---e----eeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccc
Q 047728          279 GSADGTVKVWRRE-------LQGKGTK---H----FFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLS  343 (474)
Q Consensus       279 ~~~dg~i~iwd~~-------~~~~~~~---~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~  343 (474)
                      -..++.|..+|+.       .+.....   .    ...............++|+|+++.|+.+ .....|+.++......
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            6677889999987       2221000   0    0000112233456899999999965555 5567888866543210


Q ss_pred             -c--ceeeeec------------------ceeeEEEE-------ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC--
Q 047728          344 -H--GGVLRGH------------------KLAILCLV-------TAGNLVFSGSADMSICIWRRKENEHICLSMLTGH--  393 (474)
Q Consensus       344 -~--~~~~~~~------------------~~~v~~~~-------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h--  393 (474)
                       +  ...+.+.                  ....+++.       .++.++++=...+.|+.++. .+..   .++.+.  
T Consensus       345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v---~TiaG~g~  420 (496)
T 3kya_A          345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV---STYAGRGA  420 (496)
T ss_dssp             EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE---EEEEESCT
T ss_pred             eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE---EEEecccc
Confidence             0  0111111                  11134444       34566666667789999984 4442   222211  


Q ss_pred             ----------------------ccceEEEEEeeC-CccccccceEEEEEecCCCcEEEEEccCC
Q 047728          394 ----------------------SGPVKCLAVEKD-DESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       394 ----------------------~~~v~~l~~~~~-~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                                            -.....|++.++ +.        ++++=....+|+.+++...
T Consensus       421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~--------lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM--------FYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE--------EEEEETTTTEEEEEEECCC
T ss_pred             cccccCccccccCCCCchhhhhcCCCcEEEEECCCCE--------EEEEeCCCCEEEEEECCCC
Confidence                                  123678999986 66        6666677889999998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.77  E-value=0.0075  Score=54.43  Aligned_cols=159  Identities=6%  Similarity=0.025  Sum_probs=101.0

Q ss_pred             eeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeec-------CcceeEEEe---cCCCeEEE-ee----------
Q 047728          223 ISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH-------DDAVNSIVA---GFDGLVFT-GS----------  280 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~---~~~~~l~~-~~----------  280 (474)
                      -.+++|.+....|+.++ ..++|..||...+.........       ...+..|.+   .+++.|++ ..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            44789988666777666 7899999998755433332111       113578899   57784443 33          


Q ss_pred             ---CCCcEEEEEcc---cCCCceeeeeeeeeec-------ccccEEEEEEcCCCCEEEEEcCC-CcEEEeecCcccccce
Q 047728          281 ---ADGTVKVWRRE---LQGKGTKHFFSQTLLK-------QECAVTALAISPDAAIVYCGSSD-GLVNFWERELNLSHGG  346 (474)
Q Consensus       281 ---~dg~i~iwd~~---~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~  346 (474)
                         .+..|..||+.   +........+.....+       .......++..++|+..++++.. +.|..++....... .
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~-~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS-T  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-E
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-e
Confidence               16779999987   4433211111111111       12358899999999999988888 88888777644211 1


Q ss_pred             eeeec-------ceeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728          347 VLRGH-------KLAILCLVTAGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       347 ~~~~~-------~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      .....       ...-+.+.++++.|++....|.|..+|+...
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            11111       1224678889998888877999999998843

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.76  E-value=0.0023  Score=66.12  Aligned_cols=235  Identities=13%  Similarity=0.035  Sum_probs=116.1

Q ss_pred             EEEE-EcCCEEEEeeC-CC----cEEEEeCCcc-ccccccC-ccCEEEEEec--CCEEEEEeCC-----CeEEEEecCCC
Q 047728          114 YSLA-AAGDLLYTGSD-SK----NIRVWKNQRE-FSGFKSN-SGLVKAIVIS--NEKIFSGHQD-----GKIRVWKVSSK  178 (474)
Q Consensus       114 ~~~~-~~~~~l~tgs~-dg----~v~vwd~~~~-~~~~~~h-~~~V~~i~~~--~~~l~s~~~d-----g~i~vwd~~~~  178 (474)
                      .+++ |+|++||-+.. +|    .|+++|+... .. +... ......+.|+  ++.|+....|     ..|.++++.++
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~  257 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL  257 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence            4567 77888775433 33    4889986533 11 1111 1112356676  5566666654     25677777655


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcc-e
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYK-C  254 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~-~  254 (474)
                      +........                             .........+.|+||+++|+..+.   ...|.++|+.++. .
T Consensus       258 ~~~~~lv~~-----------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~  308 (751)
T 2xe4_A          258 QSEDVCLYE-----------------------------EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH  308 (751)
T ss_dssp             GGGCEEEEE-----------------------------CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred             chhcEEEEe-----------------------------cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence            321100000                             012234567899999998887653   3468888988752 1


Q ss_pred             e--eee-eecCcceeEEEecCCC-eEEEeeCC--C--cEEEEEcccCCCceeeeeeee-eecccc--cEEEEEEcCCCCE
Q 047728          255 L--ESV-IAHDDAVNSIVAGFDG-LVFTGSAD--G--TVKVWRRELQGKGTKHFFSQT-LLKQEC--AVTALAISPDAAI  323 (474)
Q Consensus       255 ~--~~~-~~~~~~v~~v~~~~~~-~l~~~~~d--g--~i~iwd~~~~~~~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~  323 (474)
                      .  ..+ .........+.|+.++ +++....+  +  .|..+|+.....      ... +..+..  .+..+.+. .+.+
T Consensus       309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~~~li~~~~~~~l~~~~~~-~~~l  381 (751)
T 2xe4_A          309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD------WSHVLVDHSEDVFMESIAVR-SNYL  381 (751)
T ss_dssp             CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC------CCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred             ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc------ceeeEECCCCCcEEEEEEEE-CCEE
Confidence            2  223 3334555666655555 44444443  3  455555542111      011 122222  34555554 3345


Q ss_pred             EEEEcCCCc--EEEeec-------CcccccceeeeecceeeEEE------EecCC-EEEEEeCC---CcEEEEECCCCce
Q 047728          324 VYCGSSDGL--VNFWER-------ELNLSHGGVLRGHKLAILCL------VTAGN-LVFSGSAD---MSICIWRRKENEH  384 (474)
Q Consensus       324 l~~~~~dg~--i~v~d~-------~~~~~~~~~~~~~~~~v~~~------~~~~~-~l~sgs~d---g~i~iwd~~~~~~  384 (474)
                      +++...++.  |.++|+       ..+.....+.......+..+      ++++. ++++.+..   ..+..+|+.+++.
T Consensus       382 v~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          382 VVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             EEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             EEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            556666775  445564       22220112211112223445      23443 44444433   4577778776654


Q ss_pred             E
Q 047728          385 I  385 (474)
Q Consensus       385 ~  385 (474)
                      .
T Consensus       462 ~  462 (751)
T 2xe4_A          462 T  462 (751)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.75  E-value=0.023  Score=51.70  Aligned_cols=217  Identities=10%  Similarity=0.033  Sum_probs=119.6

Q ss_pred             CcEEEEeCCcc---ccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728          130 KNIRVWKNQRE---FSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS  203 (474)
Q Consensus       130 g~v~vwd~~~~---~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (474)
                      ..|+..++...   ............++.|+  ++.|+ +-...+.|..++++........                   
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-------------------   73 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------------------   73 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------------------
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------------------
Confidence            45666664432   11111222346677886  34444 4456678888888765321100                   


Q ss_pred             CeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee-
Q 047728          204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS-  280 (474)
Q Consensus       204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~-  280 (474)
                                  ..........+++.+.+..|+ +-...+.|.++++........+.........+++.|.+ .|+... 
T Consensus        74 ------------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~  141 (318)
T 3sov_A           74 ------------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW  141 (318)
T ss_dssp             ------------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred             ------------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence                        011223456888887555554 44466789999986543322222334567899999864 555544 


Q ss_pred             -CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728          281 -ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHKLAILCL  358 (474)
Q Consensus       281 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~  358 (474)
                       ..+.|...++.....  .    ......-.....|++++++..|+.+ ...+.|..+|++..... .+..+....-..+
T Consensus       142 ~~~~~I~r~~~dG~~~--~----~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~gl  214 (318)
T 3sov_A          142 GEVPKIERAGMDGSSR--F----IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFAL  214 (318)
T ss_dssp             SSSCEEEEEETTSCSC--E----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEEE
T ss_pred             CCCCEEEEEEcCCCCe--E----EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceEE
Confidence             256777777653211  1    1111223457899999976666655 45678999998753221 1222111222333


Q ss_pred             EecCC-EEEEEeCCCcEEEEECCCCce
Q 047728          359 VTAGN-LVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       359 ~~~~~-~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      ..++. ++++-...+.|..++..+++.
T Consensus       215 av~~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          215 TLFEDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEeCCEEEEEecCCCeEEEEECCCCCc
Confidence            33444 444545667888888866653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.74  E-value=0.0052  Score=57.00  Aligned_cols=235  Identities=10%  Similarity=0.018  Sum_probs=117.2

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce--eeeee---ecCcceeEEEecCC----CeEEEeeC-C-----Cc
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--LESVI---AHDDAVNSIVAGFD----GLVFTGSA-D-----GT  284 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~v~~~~~----~~l~~~~~-d-----g~  284 (474)
                      -.....++|.|++++ +.+..++.|++++  +++.  +..+.   ........|+++|+    +.|+++.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345679999999985 4556779999998  4432  11111   12346789999998    44444433 2     56


Q ss_pred             EEEEEcccCCCceeeeeeeeee---cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCcc-------
Q 047728          285 VKVWRRELQGKGTKHFFSQTLL---KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELN-------  341 (474)
Q Consensus       285 i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~-------  341 (474)
                      |..|+...........+...+.   ........++|.|+|.++++.+.             .|.|.-++.+..       
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            7777765321111111111121   11123468999999976665432             256666665531       


Q ss_pred             -----cccceeeeecce-eeEEEEe-cCCEEEEEeCCCcE------EEEECCCCc----------------eEEEEeecC
Q 047728          342 -----LSHGGVLRGHKL-AILCLVT-AGNLVFSGSADMSI------CIWRRKENE----------------HICLSMLTG  392 (474)
Q Consensus       342 -----~~~~~~~~~~~~-~v~~~~~-~~~~l~sgs~dg~i------~iwd~~~~~----------------~~~~~~~~~  392 (474)
                           ........++.. .-+++.+ ++.++++-.....+      .|.-+..+.                ...+..+..
T Consensus       187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  266 (352)
T 2ism_A          187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ  266 (352)
T ss_dssp             TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence                 011122233432 2366777 45554443322221      122222111                011222322


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                       ......++| .++.        ++++.-..+.|...++......... .....+.....++..+    ++.|||.+.+.
T Consensus       267 -~~ap~G~~~-~~G~--------l~v~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~~~rp~~v----~~~pdG~lyv~  331 (352)
T 2ism_A          267 -GFPPGNLAF-FRGD--------LYVAGLRGQALLRLVLEGERGRWRV-LRVETALSGFGRLREV----QVGPDGALYVT  331 (352)
T ss_dssp             -CCCEEEEEE-ETTE--------EEEEETTTTEEEEEEEEEETTEEEE-EEEEEEEESSCCEEEE----EECTTSCEEEE
T ss_pred             -CCCCcceEE-ECCE--------EEEEECCCCEEEEEEECCCCcceee-cchheecccCCCeeEE----EECCCCcEEEE
Confidence             234567777 4555        6666666677777777654321000 0011111112345666    66788887765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.71  E-value=0.024  Score=51.00  Aligned_cols=150  Identities=11%  Similarity=0.076  Sum_probs=76.7

Q ss_pred             CCCEEEEEECC-----CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeCC-----CcEEEEEcccCCCcee
Q 047728          231 DQNLLYSASWD-----KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQGKGTK  298 (474)
Q Consensus       231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~~  298 (474)
                      ++.+++.|+.+     ..+.+||..+.+-...-.... ..-.+++.. ++ .++.|+.+     ..+.+||+....    
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  186 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGH----  186 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence            45666666643     358889987765332211111 111222222 45 66667654     457888876432    


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC-
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD-  371 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d-  371 (474)
                      ................+.+  ++.+++.|+.+     ..+.+||+.+..-... ..........++..++++++.|+.+ 
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG  264 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence            1111111111112222222  56677777664     4688999876532211 1111111223344577777887765 


Q ss_pred             ----CcEEEEECCCCceEEE
Q 047728          372 ----MSICIWRRKENEHICL  387 (474)
Q Consensus       372 ----g~i~iwd~~~~~~~~~  387 (474)
                          ..+.+||..+.+...+
T Consensus       265 ~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          265 NSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             SSBEEEEEEEETTTTEEEEE
T ss_pred             CcccccEEEEcCCCCeEEEc
Confidence                4678899988765443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.71  E-value=0.028  Score=51.22  Aligned_cols=141  Identities=14%  Similarity=0.231  Sum_probs=86.9

Q ss_pred             CCcEEEEEcC--Ccceeeeeee------cC-cceeEEEe--cCC-C--eEEEeeCCCcEEEEEcccCCCc-eeeeeeeee
Q 047728          241 DKTFKVWRTS--DYKCLESVIA------HD-DAVNSIVA--GFD-G--LVFTGSADGTVKVWRRELQGKG-TKHFFSQTL  305 (474)
Q Consensus       241 dg~i~iwd~~--~~~~~~~~~~------~~-~~v~~v~~--~~~-~--~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~  305 (474)
                      +++|.+|++.  +++ +..+..      .. ..+..+++  ++. +  ++++...+|.+..|++...... ........ 
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~-  175 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA-  175 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-
Confidence            5789999773  333 433311      11 55677777  664 4  6888899999999998654333 22222333 


Q ss_pred             ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc----ccceee-eec---ceeeEEEE--ecCC-EEEEEe-CCCc
Q 047728          306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL----SHGGVL-RGH---KLAILCLV--TAGN-LVFSGS-ADMS  373 (474)
Q Consensus       306 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~-~~~---~~~v~~~~--~~~~-~l~sgs-~dg~  373 (474)
                      ......+..+..++....|+++-++.-|..|+.+...    ...... .++   ...-+.+.  .+++ +|++.+ .+++
T Consensus       176 f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          176 FKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             ecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            3335678899999999999999998777777754221    111111 121   12234453  3444 666666 6789


Q ss_pred             EEEEECC-CCc
Q 047728          374 ICIWRRK-ENE  383 (474)
Q Consensus       374 i~iwd~~-~~~  383 (474)
                      +.+||.. +.+
T Consensus       256 ~~Vydr~~~~~  266 (355)
T 3amr_A          256 YAIYDRQGKNK  266 (355)
T ss_dssp             EEEEESSTTCC
T ss_pred             EEEEECCCCCc
Confidence            9999997 444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.69  E-value=0.00054  Score=69.94  Aligned_cols=198  Identities=11%  Similarity=0.019  Sum_probs=112.2

Q ss_pred             CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC----cceeeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccC
Q 047728          221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD----YKCLESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~  293 (474)
                      ..+..|+|.+.+..|+.+. ..+.|+.+++..    ......+.........|++.+. + ++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3566889998776776654 457899999875    2222222222234566787744 3 4555556788999887632


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeee--ecceeeEEEEecCCE-EEEE
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNL-VFSG  368 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~-l~sg  368 (474)
                      ..      .............|+++|.+..|+.+..  .+.|.++++...... .+..  .....-+++++++.. +++-
T Consensus       486 ~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          486 KR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             CE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred             ce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeCCCCCccEEEEeccCCEEEEEe
Confidence            21      1111122234677899997665555543  267888887643221 1111  122334778876554 4455


Q ss_pred             eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       369 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ...+.|..+++.......+............|++..+ .        ++++....+.|..++..++
T Consensus       559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~--------lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K--------VFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-E--------EEEECSTTTCEEEEETTTE
T ss_pred             cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-E--------EEEEeCCCCeEEEEEccCC
Confidence            5667899999976543222221122233445666544 3        6677777788999886543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.66  E-value=0.0052  Score=58.78  Aligned_cols=196  Identities=9%  Similarity=0.071  Sum_probs=114.2

Q ss_pred             CCeeEEEecCC--CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCC-----cEEEEEcccC
Q 047728          221 DAISSLSMSED--QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQ  293 (474)
Q Consensus       221 ~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~  293 (474)
                      .....|+|.|+  ...|+.+...+.|+.+|..+++..... ........+++.+++.|+.+...+     .+...+....
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            35678999984  556666655588999999877654433 344568899999998554444322     1333332211


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeec---ceeeEEEEecCCEEEEE-
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGH---KLAILCLVTAGNLVFSG-  368 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~sg-  368 (474)
                      .. ..    .. .........++++| ++.++++-..++.|+.+|..++..........   ...-+++++++++|+.+ 
T Consensus       218 ~~-~~----~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          218 FT-ER----LS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             TC-CE----EE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             ee-cc----cc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            11 00    01 11234456788999 67666666677889999987554311221111   11237888899855555 


Q ss_pred             eCCCcEEEEECCC--CceEEEEeecCC---------------ccceEEEEE---------eeCCccccccceEEEEEecC
Q 047728          369 SADMSICIWRRKE--NEHICLSMLTGH---------------SGPVKCLAV---------EKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       369 s~dg~i~iwd~~~--~~~~~~~~~~~h---------------~~~v~~l~~---------~~~~~~~~~~~~~~l~s~s~  422 (474)
                      ...+.|+.++...  +.......+.+.               -.....+++         .+++.        ++++-..
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~--------lyvaD~~  363 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD--------FYFCDRD  363 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE--------EEEEETT
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc--------EEEEECC
Confidence            4568899988652  221101111111               123567888         55555        6666667


Q ss_pred             CCcEEEEEc
Q 047728          423 DKSVKMWRV  431 (474)
Q Consensus       423 Dg~i~vw~~  431 (474)
                      .++|+.++.
T Consensus       364 n~~I~~~~~  372 (433)
T 4hw6_A          364 SHTVRVLTP  372 (433)
T ss_dssp             TTEEEEECT
T ss_pred             CCEEEEECC
Confidence            778888874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.66  E-value=0.033  Score=50.70  Aligned_cols=216  Identities=11%  Similarity=0.028  Sum_probs=118.4

Q ss_pred             CcEEEEeCCcc-ccccccCccCEEEEEec--CCEEEEE-eCCCeEEEEecCCCC---cceeeeecccCccceeeeeecCC
Q 047728          130 KNIRVWKNQRE-FSGFKSNSGLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKD---ASIHKRVGTLPTFKDFIKCSMKP  202 (474)
Q Consensus       130 g~v~vwd~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  202 (474)
                      ..|+..|.... ...+........+++|+  ++.|+.+ ..++.|..++++...   ....                   
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-------------------   70 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------   70 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE-------------------
Confidence            34777764432 22222234457788887  4555554 456788888877521   1000                   


Q ss_pred             CCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728          203 SNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS  280 (474)
Q Consensus       203 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~  280 (474)
                                  .+.........+++.+.+..|+ +-...+.|.++|+........+.........+++.|.+ .++.+.
T Consensus        71 ------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           71 ------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             ------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             ------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence                        0001223457888887555555 44567889999987543333333334567899999854 554444


Q ss_pred             CC--CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeee--cceee
Q 047728          281 AD--GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRG--HKLAI  355 (474)
Q Consensus       281 ~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~--~~~~v  355 (474)
                      ..  +.|..+++....  ..    ......-.....+++++++..|+.+. ..+.|..+|++..... .+...  .....
T Consensus       139 ~~~~~~I~~~~~dG~~--~~----~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~~~~P  211 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVD--IY----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHP  211 (316)
T ss_dssp             CSSSCEEEEEETTSCC--EE----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSE
T ss_pred             cCCCCeEEEEcCCCCC--eE----EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCccCCc
Confidence            32  677777765221  11    11112335678999999777666554 5578999998753221 22221  11112


Q ss_pred             EEEEec-CCEEEEEeCCCcEEEEECCCCc
Q 047728          356 LCLVTA-GNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       356 ~~~~~~-~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      ..+..+ +.++++-...+.|..++..+++
T Consensus       212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          212 FSLAVFEDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence            223333 4444455566788888876655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.65  E-value=0.063  Score=53.87  Aligned_cols=197  Identities=13%  Similarity=0.023  Sum_probs=120.3

Q ss_pred             CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCce
Q 047728          221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      ..+..|+|.+.+..|+.+. .++.|..+++........+.........+++.+.+  ++++-...+.|.+.++.....  
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence            4577999999766666554 57889999886544333333223456788887654  555555678889988863321  


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSI  374 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i  374 (474)
                      .    ......-.....|+++|....|+....  .+.|...+++...............-+++.++++.|+.+. ..+.|
T Consensus       115 ~----~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I  190 (628)
T 4a0p_A          115 Q----VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI  190 (628)
T ss_dssp             E----EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             E----EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEE
Confidence            1    111133345789999996666665542  4678777776543221111112233467777666666655 56789


Q ss_pred             EEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ..+|+.......   +........++++.. +.        ++++-...+.|...|..++.
T Consensus       191 ~~~d~dG~~~~v---~~~~l~~P~glav~~-~~--------ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          191 ESSNMLGLNREV---IADDLPHPFGLTQYQ-DY--------IYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEETTSCSCEE---EEECCSCEEEEEEET-TE--------EEEEETTTTEEEEEETTTCC
T ss_pred             EEEcCCCCceEE---eeccCCCceEEEEEC-CE--------EEEecCCCCEEEEEECCCCC
Confidence            999997655322   222233456788765 33        56666667888888866654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.64  E-value=0.066  Score=55.11  Aligned_cols=219  Identities=12%  Similarity=0.032  Sum_probs=123.0

Q ss_pred             CcEEEEeCCc-cccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCe
Q 047728          130 KNIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY  205 (474)
Q Consensus       130 g~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (474)
                      ..|+..++.. ....+......+.+|+++  .+.|+ +-...+.|+.++++.........                    
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~--------------------  463 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--------------------  463 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--------------------
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee--------------------
Confidence            4566666442 233333445567788886  44554 44456778888876532100000                    


Q ss_pred             EEEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC--
Q 047728          206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA--  281 (474)
Q Consensus       206 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~--  281 (474)
                              .++.........|++.+.+..|+.+ ...+.|.+.++........+.........|++.|.+ .|+....  
T Consensus       464 --------~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          464 --------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             --------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             --------EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence                    0011123456688998877555554 467889999987544433333344567899999874 5555443  


Q ss_pred             CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeee--cceeeEEE
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRG--HKLAILCL  358 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~  358 (474)
                      .+.|...++....  .    .......-.....|++++.+..|+.+. ....|..+++...... .+...  .-.....+
T Consensus       536 ~~~I~~~~~dG~~--~----~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~~~~l~~P~gl  608 (791)
T 3m0c_C          536 PAKIKKGGLNGVD--I----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL  608 (791)
T ss_dssp             SCEEEEEETTSCC--E----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEE
T ss_pred             CCeEEEEecCCCc--e----EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecCCCccCCCCEE
Confidence            2667777765322  1    111122335688999998777666664 4567999988654332 22222  11223455


Q ss_pred             EecCCEEEEEe-CCCcEEEEECCCCc
Q 047728          359 VTAGNLVFSGS-ADMSICIWRRKENE  383 (474)
Q Consensus       359 ~~~~~~l~sgs-~dg~i~iwd~~~~~  383 (474)
                      ...+..|+... ..+.|...|..+++
T Consensus       609 av~~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          609 AVFEDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEeCCEEEEEECCCCEEEEEeCCCCc
Confidence            55555555554 55788888876664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.62  E-value=0.033  Score=53.10  Aligned_cols=141  Identities=7%  Similarity=0.006  Sum_probs=81.5

Q ss_pred             CCEEEEeeCCCcEEEEeCCc-cccccccCccCEEEEEec--CCEEEEEeCC-C----eEEEEecCCCCcceeeeecccCc
Q 047728          120 GDLLYTGSDSKNIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIFSGHQD-G----KIRVWKVSSKDASIHKRVGTLPT  191 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~s~~~d-g----~i~vwd~~~~~~~~~~~~~~~~~  191 (474)
                      +..|+.+...+.|+.+|... .+..+.........|+++  +++|+.+... +    .+.+.+. .+.......      
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~------  221 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITE------  221 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEE------
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeee------
Confidence            34555555447788888653 344444445567888887  5556666542 1    1222222 221110000      


Q ss_pred             cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEE
Q 047728          192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIV  269 (474)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~  269 (474)
                                              + ........++++| ++.++++-..++.|..++..++........ .......++
T Consensus       222 ------------------------l-~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia  276 (430)
T 3tc9_A          222 ------------------------L-TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQ  276 (430)
T ss_dssp             ------------------------E-EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEE
T ss_pred             ------------------------e-ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEE
Confidence                                    0 0123456788999 666565655778999999887654222222 123467899


Q ss_pred             ecCCC-eEE-EeeCCCcEEEEEccc
Q 047728          270 AGFDG-LVF-TGSADGTVKVWRREL  292 (474)
Q Consensus       270 ~~~~~-~l~-~~~~dg~i~iwd~~~  292 (474)
                      ++|++ .|+ +-...+.|..++...
T Consensus       277 ~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          277 FHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EcCCCCEEEEEECCCCEEEEEeCCc
Confidence            99999 344 445677899988763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.59  E-value=0.039  Score=49.80  Aligned_cols=154  Identities=10%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             CCCEEEEEECC------CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeC---------CCcEEEEEcccC
Q 047728          231 DQNLLYSASWD------KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSA---------DGTVKVWRRELQ  293 (474)
Q Consensus       231 ~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~---------dg~i~iwd~~~~  293 (474)
                      ++++++.|+.+      ..+.+||..+.+-...-.... ..-.+++.. ++ +++.|+.         -..+.+||+...
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            55666777655      468899988765332211111 111122222 44 5566654         344778887643


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccc-eeeeecceeeEEEEecCCEEEE
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHG-GVLRGHKLAILCLVTAGNLVFS  367 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s  367 (474)
                      .    ................+.+  ++++++.|+.+     ..+.+||+.+..-.. ...........+...++.+++.
T Consensus       180 ~----W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~  253 (306)
T 3ii7_A          180 T----WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL  253 (306)
T ss_dssp             E----EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred             e----EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEE
Confidence            2    1111111111112222222  56677777654     358889987653211 1111111222334447778888


Q ss_pred             EeCC-----CcEEEEECCCCceEEEEeec
Q 047728          368 GSAD-----MSICIWRRKENEHICLSMLT  391 (474)
Q Consensus       368 gs~d-----g~i~iwd~~~~~~~~~~~~~  391 (474)
                      |+.+     ..+.+||..+.+...+..+.
T Consensus       254 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          254 AGFQGVGRLGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             ECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred             eCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence            8754     56899999888766554444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.58  E-value=0.005  Score=56.77  Aligned_cols=180  Identities=12%  Similarity=0.136  Sum_probs=103.8

Q ss_pred             CeeEEEecCCCCEEEEE------------ECCCcEEEEEcCCcc-eeeee--ee-----cCcceeEEEecC--CC--eEE
Q 047728          222 AISSLSMSEDQNLLYSA------------SWDKTFKVWRTSDYK-CLESV--IA-----HDDAVNSIVAGF--DG--LVF  277 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~------------s~dg~i~iwd~~~~~-~~~~~--~~-----~~~~v~~v~~~~--~~--~l~  277 (474)
                      ...++++.|+|..++++            ..+|.|.++|..+.. ....+  .+     .......+.+.+  ++  .|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45577778876444443            168999999987321 11222  22     123556666655  34  454


Q ss_pred             Eee-C--CCcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCCCEEEEEc-----------------CCCcEEEe
Q 047728          278 TGS-A--DGTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDAAIVYCGS-----------------SDGLVNFW  336 (474)
Q Consensus       278 ~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~-----------------~dg~i~v~  336 (474)
                      ++. .  +..|.+|++.......  ....... ..-...+.+.+.++|.+.++..                 ..|.|..+
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~--~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSL--LHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEE--EEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCEE--EEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            443 2  4678899887554322  2222222 2235688999999998777654                 12456666


Q ss_pred             ecCcccccceeeee-cceeeEEEEecCCEEEEEe-CCCcEEEEECCC-CceEEEEeecCCccceEEEEEee-CCc
Q 047728          337 ERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGS-ADMSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEK-DDE  407 (474)
Q Consensus       337 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~-~~~  407 (474)
                      |..  . ......+ ....-++++++++.|+.+. ..+.|..|++.. +.......+ ...+..-.+++.+ ++.
T Consensus       209 d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          209 SPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD  279 (355)
T ss_dssp             CTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred             ECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence            653  1 2122222 3345588999998877765 568999999863 332222233 2245667788888 477

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.57  E-value=0.13  Score=55.41  Aligned_cols=301  Identities=11%  Similarity=0.062  Sum_probs=147.2

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCc-cccc--cccCccCEEEEEec--------CCEEEEEeC-CCeEEEEecCCCC
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQR-EFSG--FKSNSGLVKAIVIS--------NEKIFSGHQ-DGKIRVWKVSSKD  179 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~-~~~~--~~~h~~~V~~i~~~--------~~~l~s~~~-dg~i~vwd~~~~~  179 (474)
                      .|.+.+.++.+++.++ .+.+.+++... .+..  -..-...|.|+++.        .+.++.|.. |++|+|++++..+
T Consensus       515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          515 NISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             CCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            3555555566676665 56677765321 1111  11235679999985        358899996 9999999998654


Q ss_pred             cceeeeecc--cCcc--------ceeeeeecCCCCeEEEeeec-c-------ceeeeccCCeeEEEecCCCCEEEEEECC
Q 047728          180 ASIHKRVGT--LPTF--------KDFIKCSMKPSNYIEVRRHR-N-------GLWIKHFDAISSLSMSEDQNLLYSASWD  241 (474)
Q Consensus       180 ~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~-~-------~~~~~h~~~V~~l~~~~~~~~l~s~s~d  241 (474)
                      .........  .+..        ..++...+....++...-.. .       ..+.| ..++.=..+...+..-+-+..+
T Consensus       594 ~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~  672 (1158)
T 3ei3_A          594 LLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD  672 (1158)
T ss_dssp             EEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS
T ss_pred             eEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC
Confidence            443222211  1100        01111222222222111100 0       01112 2233333333333332223334


Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeEE-EecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEE
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI  317 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~v-~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  317 (474)
                      ....++--+ ++.... ...-..+..+ .|+...   -++ +..++.++|..+....+     .......-...+..+++
T Consensus       673 rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~~-----~~~~~ipL~~Tprri~y  744 (1158)
T 3ei3_A          673 RPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQK-----LHIRTVPLYESPRKICY  744 (1158)
T ss_dssp             SCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCSSS-----EEEEEEECSSEEEEEEE
T ss_pred             CCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEE-EEcCCceEEEEecccCC-----eeEEEEeCCCCceEEEE
Confidence            444444432 222211 1112233333 343221   233 23355699988754322     22233334457888888


Q ss_pred             cCCCCEEEEEcCC-------------------------------------------------CcEEEeecCcccccceee
Q 047728          318 SPDAAIVYCGSSD-------------------------------------------------GLVNFWERELNLSHGGVL  348 (474)
Q Consensus       318 ~~~~~~l~~~~~d-------------------------------------------------g~i~v~d~~~~~~~~~~~  348 (474)
                      +|+.+.++++..+                                                 +.|++.|..+......+.
T Consensus       745 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~  824 (1158)
T 3ei3_A          745 QEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQ  824 (1158)
T ss_dssp             EGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEE
T ss_pred             cCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEe
Confidence            8877766554321                                                 124444444333222222


Q ss_pred             eecceeeEEEE---ec---CCEEEEEe----------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccccc
Q 047728          349 RGHKLAILCLV---TA---GNLVFSGS----------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSRE  412 (474)
Q Consensus       349 ~~~~~~v~~~~---~~---~~~l~sgs----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  412 (474)
                      ......+.|+.   ..   ..++++|+          ..|.|++|++...+...+.. ....++|++++-.. +.     
T Consensus       825 l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~g~v~al~~~~-g~-----  897 (1158)
T 3ei3_A          825 FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVKGAVYSMVEFN-GK-----  897 (1158)
T ss_dssp             CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEESSCEEEEEEET-TE-----
T ss_pred             CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcCCcCEEEeeeC-CE-----
Confidence            22223333333   22   46888887          34889999997555433332 33567899987553 34     


Q ss_pred             ceEEEEEecCCCcEEEEEccCC
Q 047728          413 KRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       413 ~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                         +|++.+  ..|++|++...
T Consensus       898 ---Lla~ig--~~l~vy~l~~~  914 (1158)
T 3ei3_A          898 ---LLASIN--STVRLYEWTTE  914 (1158)
T ss_dssp             ---EEEEET--TEEEEEEECTT
T ss_pred             ---EEEEcC--CEEEEEECCCC
Confidence               555443  68999999765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.50  E-value=0.017  Score=51.99  Aligned_cols=186  Identities=8%  Similarity=0.097  Sum_probs=94.9

Q ss_pred             CCCEEEEEECC-----CcEEEEEcCCcc---eee--eeeecCcceeEEEecCCC-eEEEeeCCC-----cEEEEEcccCC
Q 047728          231 DQNLLYSASWD-----KTFKVWRTSDYK---CLE--SVIAHDDAVNSIVAGFDG-LVFTGSADG-----TVKVWRRELQG  294 (474)
Q Consensus       231 ~~~~l~s~s~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~v~~~~~~-~l~~~~~dg-----~i~iwd~~~~~  294 (474)
                      ++.+++.|+.+     ..+.+||..+.+   -..  .+...... .+++.. ++ .++.|+.++     .+.+||+....
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45666667654     468999988765   222  12111111 122222 45 666666543     57788875432


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEE
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                        ..  ..............+.+  ++++++.|+.+     ..+.+||+.+..-... ..........+...++.+++.|
T Consensus       140 --W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  213 (301)
T 2vpj_A          140 --WS--MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG  213 (301)
T ss_dssp             --EE--EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             --EE--ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence              11  11111111112222222  56777777654     4588899876532211 0111111223344567777777


Q ss_pred             eCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728          369 SAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ  434 (474)
Q Consensus       369 s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~  434 (474)
                      +.+     ..+.+||..+.+...+..+.........+.  -++.        +++.|+.+     ..|.+||+.+.
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~--------i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGR--------LYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE--------EEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCE--------EEEEcCcCCCcccccEEEEcCCCC
Confidence            764     568999999887654433322222222222  2555        67777655     35677787654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.50  E-value=0.027  Score=50.79  Aligned_cols=188  Identities=12%  Similarity=0.087  Sum_probs=93.4

Q ss_pred             CCCEEEEEECC-----CcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCC-----cEEEEEcccCCCceee
Q 047728          231 DQNLLYSASWD-----KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQGKGTKH  299 (474)
Q Consensus       231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~  299 (474)
                      ++.+++.|+.+     ..+.+||..+.+-...-.... ..-.+++...+..++.|+.++     .+.+||+....    .
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~----W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE----W  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE----E
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe----E
Confidence            55666666644     358889987765322211111 111222222233666676553     36677765322    1


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCC-------CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSD-------GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                      ...............+.+  ++++++.|+.+       ..+.+||+.+..-... ..........+...++.+++.|+.+
T Consensus       137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  214 (302)
T 2xn4_A          137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD  214 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred             eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence            111111111112222222  56666666543       3588899876532111 1111111223344577777887764


Q ss_pred             -----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC-----cEEEEEccCC
Q 047728          372 -----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK-----SVKMWRVSEQ  434 (474)
Q Consensus       372 -----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg-----~i~vw~~~~~  434 (474)
                           ..+.+||..+.+...+..+.........+  .-++.        +++.|+.++     .|.+||+.+.
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~--------i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGL--------LYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTE--------EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCE--------EEEECCcCCCcccccEEEEcCCCC
Confidence                 46899999988765443332211111222  22555        677777553     4888888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.40  E-value=0.048  Score=49.30  Aligned_cols=151  Identities=11%  Similarity=0.087  Sum_probs=76.4

Q ss_pred             CCCEEEEEECC-----CcEEEEEcCCcceeee--eeecCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccCCCce
Q 047728          231 DQNLLYSASWD-----KTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQGKGT  297 (474)
Q Consensus       231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~  297 (474)
                      ++++++.|+.+     ..+.+||..+.+-...  +...... .+++.. ++ +++.|+.+     ..+.+||+....   
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~---  195 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE---  195 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE---
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCe---
Confidence            45566666533     4688899877643222  1111111 122222 44 66667654     457888876432   


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                       ................+.+  ++.+++.|+.+     ..+.+||+.+..-... ..........+...++++++.|+.+
T Consensus       196 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  272 (308)
T 1zgk_A          196 -WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYD  272 (308)
T ss_dssp             -EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             -EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcC
Confidence             1111111111122222333  56777777654     4688999876532111 1111111223333467777777754


Q ss_pred             -----CcEEEEECCCCceEEEEe
Q 047728          372 -----MSICIWRRKENEHICLSM  389 (474)
Q Consensus       372 -----g~i~iwd~~~~~~~~~~~  389 (474)
                           ..+.+||..+.+...+..
T Consensus       273 ~~~~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          273 GHTFLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             SSCBCCEEEEEETTTTEEEEEEE
T ss_pred             CCcccceEEEEcCCCCEEeecCC
Confidence                 457889998877654433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.38  E-value=0.058  Score=48.61  Aligned_cols=187  Identities=12%  Similarity=0.153  Sum_probs=95.1

Q ss_pred             CCCEEEEEECC----CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeCC------CcEEEEEcccCCCcee
Q 047728          231 DQNLLYSASWD----KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSAD------GTVKVWRRELQGKGTK  298 (474)
Q Consensus       231 ~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~d------g~i~iwd~~~~~~~~~  298 (474)
                      ++.+++.|+.+    ..+.+||..+.+-...-.... ..-.+++.. ++ +++.|+.+      ..+.+||+....    
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~----  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES----  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE----
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc----
Confidence            55666777654    668889988765332211111 111122222 44 66677655      458888876432    


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcC---------CCcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSS---------DGLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                      ................+.+  ++++++.|+.         -..+.+||+.+..-... ..........++..++++++.|
T Consensus       130 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  207 (306)
T 3ii7_A          130 WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVG  207 (306)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEe
Confidence            1111111111111222222  5666666653         34588899876532111 0111111223333467777777


Q ss_pred             eCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728          369 SAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ  434 (474)
Q Consensus       369 s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~  434 (474)
                      +.+     ..+.+||..+.+...+..+........++.+  ++.        +++.|+.+     ..|.+||+.+.
T Consensus       208 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~--------i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          208 GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI--------VYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE--------EEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE--------EEEEeCcCCCeeeeeEEEEcCCCC
Confidence            653     4689999998876544333322222223333  555        67777754     45788888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.36  E-value=0.061  Score=48.35  Aligned_cols=148  Identities=11%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             CCCEEEEEECCC-----cEEEEEcCCcceeeeeeec-CcceeEEEecCCC-eEEEeeCC-------CcEEEEEcccCCCc
Q 047728          231 DQNLLYSASWDK-----TFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDG-LVFTGSAD-------GTVKVWRRELQGKG  296 (474)
Q Consensus       231 ~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~d-------g~i~iwd~~~~~~~  296 (474)
                      ++.+++.|+.++     .+.+||+.+.+-...-... ...-.+++.. ++ .++.|+.+       ..+.+||+....  
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNE--  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence            556677776553     4778888775533221111 1111222333 44 56666543       347788876432  


Q ss_pred             eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeC
Q 047728          297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                        ................+.+  ++.+++.|+.+     ..+.+||+.+..-... ..........++..++.+++.|+.
T Consensus       185 --W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~  260 (302)
T 2xn4_A          185 --WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGD  260 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             --EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence              1111111111112222222  56777777654     3688899876532111 011111122334457778888876


Q ss_pred             CC-----cEEEEECCCCceE
Q 047728          371 DM-----SICIWRRKENEHI  385 (474)
Q Consensus       371 dg-----~i~iwd~~~~~~~  385 (474)
                      ++     .+.+||..+.+..
T Consensus       261 ~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             CSSSBCCCEEEEETTTTEEE
T ss_pred             CCCcccccEEEEcCCCCeEE
Confidence            53     4899999887754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.35  E-value=0.25  Score=53.27  Aligned_cols=223  Identities=8%  Similarity=0.073  Sum_probs=117.6

Q ss_pred             cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          149 GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       149 ~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      ..|...+.++.+++.+. ++.+.+++++.++......                               ..-...|.|+++
T Consensus       514 ~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~-------------------------------~~l~~evscl~i  561 (1158)
T 3ei3_A          514 KNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISH-------------------------------TEMEHEVACLDI  561 (1158)
T ss_dssp             CCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEE-------------------------------EECSSCEEEEEC
T ss_pred             CEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecc-------------------------------cCCCCceEEEEe
Confidence            45777777777777775 6778888777542211000                               113457999998


Q ss_pred             cCC------CCEEEEEEC-CCcEEEEEcCCcceeeeeeec-CcceeEEEecC-CC--eEEEeeCCCcEEEEEcccCCCce
Q 047728          229 SED------QNLLYSASW-DKTFKVWRTSDYKCLESVIAH-DDAVNSIVAGF-DG--LVFTGSADGTVKVWRRELQGKGT  297 (474)
Q Consensus       229 ~~~------~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~  297 (474)
                      .+.      ..+++.|.+ |++|+|+++.+.+.+....-. .....++.+.. ++  +|+.|-.||.+..+.+.... +.
T Consensus       562 ~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~t-g~  640 (1158)
T 3ei3_A          562 TPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIET-GL  640 (1158)
T ss_dssp             CCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTT-CC
T ss_pred             ecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCC-Cc
Confidence            763      368999997 999999999877665443221 12334443321 23  78999999998777665321 11


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec--CCEEEEEeCCCcEE
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSIC  375 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sgs~dg~i~  375 (474)
                      .........+ ..++.-..+...+..-+.+..+.-..+|.-+............-..+..|+..  .+-++..+ ++.++
T Consensus       641 l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~Lr  718 (1158)
T 3ei3_A          641 LSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLT  718 (1158)
T ss_dssp             EEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEE
T ss_pred             cccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceE
Confidence            1111111222 23444334443333222223334444443332211100000001122333321  34444333 55699


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      |..+...+...+..+.- ...+..++++|+.+
T Consensus       719 I~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~  749 (1158)
T 3ei3_A          719 IGTIDEIQKLHIRTVPL-YESPRKICYQEVSQ  749 (1158)
T ss_dssp             EEEECCSSSEEEEEEEC-SSEEEEEEEEGGGT
T ss_pred             EEEecccCCeeEEEEeC-CCCceEEEEcCCCC
Confidence            99886554444444443 35789999999877

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.25  E-value=0.05  Score=49.19  Aligned_cols=186  Identities=12%  Similarity=0.117  Sum_probs=92.5

Q ss_pred             CCCEEEEEEC----C-----CcEEEEEcCCcceeee--eeecCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccC
Q 047728          231 DQNLLYSASW----D-----KTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQ  293 (474)
Q Consensus       231 ~~~~l~s~s~----d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~  293 (474)
                      ++.+++.|+.    +     ..+.+||..+.+-...  +...... .+++.. ++ +++.|+.+     ..+.+||+...
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-IGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-CEEEEE-TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-cEEEEE-CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4555666654    2     4688899877653222  1111111 122222 44 66666644     35778887643


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEE
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFS  367 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s  367 (474)
                      .-    ...............+.+  ++.+++.|+.+     ..+.+||+.+..-... ..........+...++.+++.
T Consensus       148 ~W----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  221 (308)
T 1zgk_A          148 EW----HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAA  221 (308)
T ss_dssp             EE----EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred             eE----eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEE
Confidence            21    111111111122222222  56677777654     4588898876532111 111111112333447777777


Q ss_pred             EeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728          368 GSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ  434 (474)
Q Consensus       368 gs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~  434 (474)
                      |+.+     ..+.+||+.+.+...+..+.........+.  -++.        +++.|+.+     ..|.+||+.+.
T Consensus       222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~--------i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGR--------IYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTE--------EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCE--------EEEEcCcCCCcccceEEEEcCCCC
Confidence            7764     569999999887554433322221222222  2455        67777654     34777887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.22  E-value=0.13  Score=47.47  Aligned_cols=101  Identities=13%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             CEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          150 LVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       150 ~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      .-..++|. +..|+.+..+|.|++++  .++..   .+...+                        ++.........|+|
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~---~~~~~~------------------------v~~~g~~~p~gia~   82 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLS---TYAELS------------------------VYHRGESGLLGLAL   82 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEE---EEEECC------------------------CCCSTTCSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCcc---Eeecce------------------------EeecCCCCceeEEE
Confidence            45678886 33566667778888887  33211   111000                        01112346789999


Q ss_pred             cCC---CCEEEEEEC-C-----CcEEEEEcCCcc-----ee-eeee---ecCcceeEEEecCCCeEEEe
Q 047728          229 SED---QNLLYSASW-D-----KTFKVWRTSDYK-----CL-ESVI---AHDDAVNSIVAGFDGLVFTG  279 (474)
Q Consensus       229 ~~~---~~~l~s~s~-d-----g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~v~~~~~~~l~~~  279 (474)
                      +|+   +..|+.+.. .     ..|..++.....     .+ ..+.   ........++|.|+|.|+.+
T Consensus        83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A           83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            998   556655543 2     668888876432     11 1122   11123468999999944443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.19  E-value=0.23  Score=49.72  Aligned_cols=199  Identities=11%  Similarity=0.057  Sum_probs=115.0

Q ss_pred             cCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeee-eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC
Q 047728          220 FDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLES-VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      ......|+|++.+..|+.+. ..+.|..+++........ +...-.....+++.+.+  ++++-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            34577899999777777665 457788888865432222 22222567889998854  555556678899999864321


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceee--eecceeeEEEEecCCEEEEEe-C
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVL--RGHKLAILCLVTAGNLVFSGS-A  370 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sgs-~  370 (474)
                        .    ......-.....|+++|.+..|+....  .+.|...+++..... .+.  ......-+++.++++.|+.+. .
T Consensus       119 --~----~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~~P~Glald~~~~~LY~aD~~  191 (619)
T 3s94_A          119 --K----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAK  191 (619)
T ss_dssp             --E----EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEETT
T ss_pred             --E----EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEEeCCCCCCcEEEEEccCCEEEEEeCC
Confidence              1    111133445778999997666665543  356776766543221 111  112233467777666665554 5


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      .+.|..+|+.......+  ..+......+|++..+ .        ++++-...+.|...|..+++.
T Consensus       192 ~~~I~~~~~dG~~~~~~--~~~~~~~P~gi~~~~~-~--------ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          192 LNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFED-I--------LYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             TCCEEEESSSCCEEC-----------CCCEEESSS-E--------EEEECTTTCSEEEEESSSCCC
T ss_pred             CCeEEEecCCCCccEEE--EeCCCCCceEEEEeCC-E--------EEEecCCCCEEEEEECCCCcc
Confidence            67899999876543222  1111222346677655 3        666767778888888876643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.13  E-value=0.067  Score=49.50  Aligned_cols=243  Identities=8%  Similarity=-0.032  Sum_probs=118.3

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-eeeeee---ecCcceeEEEecCC----CeEEEeeC----C----C
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-CLESVI---AHDDAVNSIVAGFD----GLVFTGSA----D----G  283 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~v~~~~~----~~l~~~~~----d----g  283 (474)
                      -.....|+|.|+++ |+++..++.|+++| .+++ .+..+.   ........|+++|+    +.|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999987 55556779999997 4454 222111   12345789999997    55544433    2    5


Q ss_pred             cEEEEEcccCCCce--eeeeeeeee-cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCccc-----
Q 047728          284 TVKVWRRELQGKGT--KHFFSQTLL-KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELNL-----  342 (474)
Q Consensus       284 ~i~iwd~~~~~~~~--~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~-----  342 (474)
                      .|..|+........  ...+..... ........|+|.|+|.++++.+.             .|.|.-++.+...     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            56666655321111  111111111 11223467999999987666432             2456666654321     


Q ss_pred             --ccceeeeecce-eeEEEEe-cCCEEEEEeCCC---cEEEEECCC--------C------ceEEEEeecCCccceEEEE
Q 047728          343 --SHGGVLRGHKL-AILCLVT-AGNLVFSGSADM---SICIWRRKE--------N------EHICLSMLTGHSGPVKCLA  401 (474)
Q Consensus       343 --~~~~~~~~~~~-~v~~~~~-~~~~l~sgs~dg---~i~iwd~~~--------~------~~~~~~~~~~h~~~v~~l~  401 (474)
                        .......++.. .-+++.+ ++.++++-....   .|.+...-.        +      ....+..+.........++
T Consensus       186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence              01122233332 2366777 455444332211   233322100        0      0011223311223577888


Q ss_pred             EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       402 ~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      |........ -+..++++.-..+.|...++.......   .....+.+....+..+    ++.|||.+.+.
T Consensus       266 ~y~g~~fp~-~~G~l~v~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~~~rp~~v----~~~pDG~lyv~  328 (354)
T 3a9g_A          266 FVHGDMFPG-LRGWLLIACLRGSMLAAVNFGDNMEVR---KISTFFKNVFGRLRDV----VIDDDGGILIS  328 (354)
T ss_dssp             ECCSSSCGG-GTTEEEEEETTTTEEEEEEECGGGCEE---EEEEECTTTSCCEEEE----EECTTSCEEEE
T ss_pred             EECCCCCcc-cCCcEEEEEcCCCEEEEEEECCCCccc---ceeeeccCCCCCeeEE----EECCCCcEEEE
Confidence            853221111 111266666667778888876431110   0011122223445566    66788887664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.09  E-value=0.0039  Score=63.58  Aligned_cols=173  Identities=9%  Similarity=-0.020  Sum_probs=92.9

Q ss_pred             eeEEEecCCCCEE-EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC--CCcEEEEEcccCCCcee
Q 047728          223 ISSLSMSEDQNLL-YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA--DGTVKVWRRELQGKGTK  298 (474)
Q Consensus       223 V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~--dg~i~iwd~~~~~~~~~  298 (474)
                      ...|++.+.+..| ++-...+.|.++++........+.........|++.|.+ .|+....  .+.|..+++.....  .
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~  532 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--Y  532 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--C
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--e
Confidence            4567887644444 444456889999986544333333233456788998865 4444432  26777776653221  1


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEE-EEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEE-EEEeCCCcE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIV-YCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLV-FSGSADMSI  374 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l-~sgs~dg~i  374 (474)
                          ......-.....|+|+|++..| ++-...+.|.++++...... .+...  .......+..++..| ++-...+.|
T Consensus       533 ----~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~~lywtd~~~~~V  607 (699)
T 1n7d_A          533 ----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFEDKVFWTDIINEAI  607 (699)
T ss_dssp             ----EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETTEEEEECSTTTCE
T ss_pred             ----EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECCEEEEEeCCCCeE
Confidence                1111123346789999975544 44456678999998653222 12111  111122333344444 444566889


Q ss_pred             EEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          375 CIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      ..++..+++.  +..+.........|++.+
T Consensus       608 ~~~d~~~G~~--~~~i~~~~~~P~~i~v~~  635 (699)
T 1n7d_A          608 FSANRLTGSD--VNLLAENLLSPEDMVLFH  635 (699)
T ss_dssp             EEEETTTEEE--EECCCTTCSSCCCCCBCS
T ss_pred             EEEEccCCCc--eEEeecCCCCCcEEEEeC
Confidence            9999877663  334433222344554443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.07  E-value=0.2  Score=46.87  Aligned_cols=198  Identities=11%  Similarity=0.125  Sum_probs=126.8

Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT  304 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (474)
                      +.-.+|..+.|+.=. ..++.|+|+++.+.+..+.-.+ .|.-=.|-.+..|+.. .+..|.-|++.......+. +...
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kv-FdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKM-FDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEE-EECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhh-eecc
Confidence            344577777666554 6889999999998888876544 4555566555544433 3567999998753332222 2222


Q ss_pred             eecccccEEEEEEcCCCCEEEEEcC-------CCcEEEeecCcccccceeeeecceeeEEEEecCC-----EEEEEeC--
Q 047728          305 LLKQECAVTALAISPDAAIVYCGSS-------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-----LVFSGSA--  370 (474)
Q Consensus       305 ~~~~~~~v~~l~~~~~~~~l~~~~~-------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~sgs~--  370 (474)
                      ..-....|..-..+++.++++..+-       .|.+.+|..+.+  ..+.+.+|......+..+|+     +++-+..  
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~  223 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence            1223567888888999998775432       467889988765  44677888877777666543     3444443  


Q ss_pred             -CCcEEEEECCCC---ce----EEEEee---cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          371 -DMSICIWRRKEN---EH----ICLSML---TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       371 -dg~i~iwd~~~~---~~----~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                       .+.++|-++...   ..    ..+..+   ..-.+--.++..++...        +++.-+.-|.|.+||+.++..
T Consensus       224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg--------viyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD--------VVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT--------EEEEEETTSEEEEEETTTCCE
T ss_pred             CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC--------EEEEEecCceEEEEeccccee
Confidence             278999988543   10    001111   11233455677777776        788888899999999999843

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.99  E-value=0.063  Score=51.71  Aligned_cols=159  Identities=11%  Similarity=0.074  Sum_probs=92.7

Q ss_pred             CCeeEEEecC-CCCEEEEEEC-CCcEEEEEcCCcceeeeeeec---CcceeEEEe-------cCCC-eEEEeeCCC----
Q 047728          221 DAISSLSMSE-DQNLLYSASW-DKTFKVWRTSDYKCLESVIAH---DDAVNSIVA-------GFDG-LVFTGSADG----  283 (474)
Q Consensus       221 ~~V~~l~~~~-~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~---~~~v~~v~~-------~~~~-~l~~~~~dg----  283 (474)
                      .....|+|.| +...|+.+.. .+.|++.|+.++.....+...   ......++|       .+++ .|+++...+    
T Consensus       139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            3567899998 3555555544 467999998876655444321   234788999       9988 466665554    


Q ss_pred             ---cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecC-------cccc---------
Q 047728          284 ---TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERE-------LNLS---------  343 (474)
Q Consensus       284 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~-------~~~~---------  343 (474)
                         .|.+++...............+. .......++++| ++.++++-..++.|..+|+.       ++..         
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               25566533311111000000111 122345778999 55666667778889999987       3332         


Q ss_pred             --cceeee---ecceeeEEEEecCCEEEEE-eCCCcEEEEECC
Q 047728          344 --HGGVLR---GHKLAILCLVTAGNLVFSG-SADMSICIWRRK  380 (474)
Q Consensus       344 --~~~~~~---~~~~~v~~~~~~~~~l~sg-s~dg~i~iwd~~  380 (474)
                        ...+..   .....-+++++++++|+.+ ...+.|+.++..
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence              001111   1223458888999965555 456788886654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.98  E-value=0.11  Score=48.46  Aligned_cols=113  Identities=13%  Similarity=0.103  Sum_probs=78.9

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc------------eeeeeee------cCcceeEEEecCCC----eEEEe
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK------------CLESVIA------HDDAVNSIVAGFDG----LVFTG  279 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~~------~~~~v~~v~~~~~~----~l~~~  279 (474)
                      .|..+..+|+|++|+..+ +..|.|..+..+.            ....+.-      ...+|..+.|+|-+    .|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            567799999999999886 4679998886321            1112222      24679999999976    79999


Q ss_pred             eCCCcEEEEEcccCCCceeeeeeee-----eecccccEEEEEEcCCCCEEEEEc--CCCcEEEe
Q 047728          280 SADGTVKVWRRELQGKGTKHFFSQT-----LLKQECAVTALAISPDAAIVYCGS--SDGLVNFW  336 (474)
Q Consensus       280 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~v~  336 (474)
                      ..|+.|++||+........ .+...     .......|.+++|..++-.|++.+  ..|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999986332211 11111     112236799999999988888755  88888754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.95  E-value=0.21  Score=45.11  Aligned_cols=153  Identities=10%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             CCCCEEEEEEC----C-------CcEEEEEcCCcceeeeeeec-CcceeEEEecCCCeEEEeeCC--------CcEEEEE
Q 047728          230 EDQNLLYSASW----D-------KTFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLVFTGSAD--------GTVKVWR  289 (474)
Q Consensus       230 ~~~~~l~s~s~----d-------g~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l~~~~~d--------g~i~iwd  289 (474)
                      .++.+++.|+.    +       ..+.+||..+.+-...-... ...-.+++...+..++.|+.+        ..+.+||
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d  123 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD  123 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEEC
Confidence            46677777773    1       12778888776532211111 111112222322266666632        3478888


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-C-----CcEEEeecCcccccc-eeeeecceeeEEEEecC
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-D-----GLVNFWERELNLSHG-GVLRGHKLAILCLVTAG  362 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-----g~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~  362 (474)
                      +....    ................+.  -++++++.|+. +     ..+.+||..+..-.. ...........+...++
T Consensus       124 ~~~~~----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~  197 (315)
T 4asc_A          124 RLSFK----WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDG  197 (315)
T ss_dssp             TTTTE----EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT
T ss_pred             CCCCc----EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECC
Confidence            76432    111111111111222222  35667777765 2     468889987653211 11111111223344577


Q ss_pred             CEEEEEeCCC-----cEEEEECCCCceEEEE
Q 047728          363 NLVFSGSADM-----SICIWRRKENEHICLS  388 (474)
Q Consensus       363 ~~l~sgs~dg-----~i~iwd~~~~~~~~~~  388 (474)
                      ++++.|+.++     .+.+||..+.+...+.
T Consensus       198 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  228 (315)
T 4asc_A          198 RIIVAAGVTDTGLTSSAEVYSITDNKWAPFE  228 (315)
T ss_dssp             EEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred             EEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence            7888887654     5889999888765443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.89  E-value=0.51  Score=48.60  Aligned_cols=243  Identities=9%  Similarity=0.055  Sum_probs=127.4

Q ss_pred             cEEEEEEc-CCEEEEeeCCCcEEEEeCCccccccc-------cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcce
Q 047728          112 HIYSLAAA-GDLLYTGSDSKNIRVWKNQREFSGFK-------SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       112 ~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~~~~~~-------~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~  182 (474)
                      .|+++..+ ...|..|+..| +.++........+.       .....|.++..+ ...|..|..+| +..++..++....
T Consensus       280 ~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~  357 (758)
T 3ott_A          280 IIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHD  357 (758)
T ss_dssp             CEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCC
T ss_pred             eEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccce
Confidence            48888877 33566666666 54443322221110       123468888776 55677777665 5556554432111


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-e-
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-A-  260 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~-  260 (474)
                      ........                     ....+  ....|.++.-..++.+- .|+. +-|..+|..+++...... . 
T Consensus       358 ~~~~~~~~---------------------~~~~l--~~~~v~~i~~d~~g~lW-igt~-~GL~~~~~~~~~~~~~~~~~~  412 (758)
T 3ott_A          358 AIWYRMGD---------------------KTYPL--SHNRIRHIYEDKEQQLW-IATD-GSINRYDYATRQFIHYNIVDN  412 (758)
T ss_dssp             CEEECTTC---------------------SSSCC--SCSCEEEEEECTTSCEE-EEET-TEEEEEETTTTEEEEEEEECC
T ss_pred             eEEeccCC---------------------cCCCC--CCCceEEEEECCCCCEE-EEeC-CcHhhcCcCCCcEEEeecCCC
Confidence            00000000                     00000  23468888877777644 4554 569999988765433211 1 


Q ss_pred             ----cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC--Cceeeeeeee---eec-ccccEEEEEEcCCCCEEEEEcCC
Q 047728          261 ----HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG--KGTKHFFSQT---LLK-QECAVTALAISPDAAIVYCGSSD  330 (474)
Q Consensus       261 ----~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~---~~~-~~~~v~~l~~~~~~~~l~~~~~d  330 (474)
                          ....|.++....++.|..|+..+-|.++|.....  ..........   ..+ ....|.++..++++.+.+.++..
T Consensus       413 ~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~  492 (758)
T 3ott_A          413 TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN  492 (758)
T ss_dssp             C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC
T ss_pred             cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC
Confidence                1345788888888888888887788888865310  0000000000   011 22358999999999877644444


Q ss_pred             CcEEEeecCcccccceeee---ecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCc
Q 047728          331 GLVNFWERELNLSHGGVLR---GHKLAILCLVTA-GNLVFSGSADMSICIWRRKENE  383 (474)
Q Consensus       331 g~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~  383 (474)
                      +-|..||..+.... ....   .....+.++..+ ...|..|+.+ -+..||..+.+
T Consensus       493 ~Gl~~~d~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~lWigt~~-Gl~~~~~~~~~  547 (758)
T 3ott_A          493 KGIDKINPRTREVT-KLFADELTGEKSPNYLLCDEDGLLWVGFHG-GVMRINPKDES  547 (758)
T ss_dssp             SSEEEEETTTTEEE-EECTTTSCGGGCEEEEEECTTSCEEEEETT-EEEEECC--CC
T ss_pred             CCcEEEeCCCCceE-EecCCCcCCCcccceEEECCCCCEEEEecC-ceEEEecCCCc
Confidence            55888887654322 1110   012334555543 2344455554 48888876554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.87  E-value=0.52  Score=48.52  Aligned_cols=304  Identities=13%  Similarity=0.196  Sum_probs=150.8

Q ss_pred             CcEEEEEEc-CCEEEEeeCCCcEEEEeCCcc-cccc-ccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee-
Q 047728          111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGF-KSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV-  186 (474)
Q Consensus       111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~-~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-  186 (474)
                      ..|.++..+ ...|..|+.+| +..||.... +... ......|.++...++.|..++.+| |..++..+.+....... 
T Consensus        63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~  140 (758)
T 3ott_A           63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNG-LYTYQLQSRKLTSFDTRR  140 (758)
T ss_dssp             SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTE-EEEEETTTCCEEEECHHH
T ss_pred             ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCc-ceeEeCCCCeEEEeccCC
Confidence            357887766 55777888776 778885432 1111 112335777766667788887774 77888766543221000 


Q ss_pred             cccCccceeeeeecCCCCeEEEe--------eeccceeee---------ccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          187 GTLPTFKDFIKCSMKPSNYIEVR--------RHRNGLWIK---------HFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---------h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      ..++. ..+.....+....+.+.        ......+..         ....|.++....++..|..|+. +-|..+|.
T Consensus       141 ~~l~~-~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~  218 (758)
T 3ott_A          141 NGLPN-NTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP  218 (758)
T ss_dssp             HCCSC-SCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET
T ss_pred             CCcCC-CeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcC
Confidence            00110 01111111111111111        001111110         1123788887777776666664 45888998


Q ss_pred             CCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee---eecccccEEEEEEcCCCCEEEE
Q 047728          250 SDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT---LLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      .+++...........|.++....++.|..|+.+ -|.+++......  .......   ..-....|.++..+.++.+-+ 
T Consensus       219 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-  294 (758)
T 3ott_A          219 STGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPL--QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-  294 (758)
T ss_dssp             TTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCC--EEECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred             CCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcE--EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence            776543222222456888888888877777754 577787653321  0000000   011234689999888877555 


Q ss_pred             EcCCCcEEEeecCcccccceee----eecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeec-------CCc
Q 047728          327 GSSDGLVNFWERELNLSHGGVL----RGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLT-------GHS  394 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-------~h~  394 (474)
                      |+..| +.++............    ......+.++..+ ...|..|+.+| +..++..+++......+.       -..
T Consensus       295 GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~  372 (758)
T 3ott_A          295 GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSH  372 (758)
T ss_dssp             EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSC
T ss_pred             EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCC
Confidence            55556 5444332211110000    0012345666554 33455566554 666665543211011111       012


Q ss_pred             cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..|.++.-..++.         |..|+. +-|..|+..++
T Consensus       373 ~~v~~i~~d~~g~---------lWigt~-~GL~~~~~~~~  402 (758)
T 3ott_A          373 NRIRHIYEDKEQQ---------LWIATD-GSINRYDYATR  402 (758)
T ss_dssp             SCEEEEEECTTSC---------EEEEET-TEEEEEETTTT
T ss_pred             CceEEEEECCCCC---------EEEEeC-CcHhhcCcCCC
Confidence            3578887777765         334443 45777776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.85  E-value=0.12  Score=47.61  Aligned_cols=148  Identities=9%  Similarity=-0.023  Sum_probs=65.3

Q ss_pred             CcEEEEEcCCcceeeeeeecC-cce-eEEEecCCCeEEEeeC------CCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728          242 KTFKVWRTSDYKCLESVIAHD-DAV-NSIVAGFDGLVFTGSA------DGTVKVWRRELQGKGTKHFFSQTLLKQECAVT  313 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~-~~v-~~v~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  313 (474)
                      ..+.+||..+.+-...-.... ..- .+++...+.+++.|+.      ...+.+||+......  ...............
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE--EEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc--EEecCCCCCCccccc
Confidence            578899988765333211111 111 2333333336666654      345667776322221  111111111111111


Q ss_pred             EEEEcCCCCEEEEEcCC----------------------CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeC
Q 047728          314 ALAISPDAAIVYCGSSD----------------------GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       314 ~l~~~~~~~~l~~~~~d----------------------g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                      ..+...++.+++.|+.+                      ..+.+||+.+..-... .+........++..++++++.|+.
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence            11222356677777632                      2467888876532211 111111223445567888888885


Q ss_pred             CC------cEEEEECCCCceEEEEeec
Q 047728          371 DM------SICIWRRKENEHICLSMLT  391 (474)
Q Consensus       371 dg------~i~iwd~~~~~~~~~~~~~  391 (474)
                      ++      .|.++++++++......+.
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             CCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            53      3556688877755433333

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.82  E-value=0.49  Score=47.35  Aligned_cols=191  Identities=8%  Similarity=0.089  Sum_probs=101.9

Q ss_pred             cEEEEEEc--CCEEE-EeeCCCcEEEEeCCcc---ccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcce
Q 047728          112 HIYSLAAA--GDLLY-TGSDSKNIRVWKNQRE---FSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       112 ~i~~~~~~--~~~l~-tgs~dg~v~vwd~~~~---~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~  182 (474)
                      ....++++  ++.|+ +-...+.|..++....   ...+.........++++  ++.|+ +-...+.|.+.+++......
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~  120 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  120 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE
Confidence            35666665  44444 4444677777775432   12222233467778876  45554 44567889999987653321


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeeeeee
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLESVIA  260 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~  260 (474)
                      ..                                .........|++.|.+..|+....  .+.|...++...........
T Consensus       121 l~--------------------------------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~  168 (619)
T 3s94_A          121 LF--------------------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  168 (619)
T ss_dssp             EE--------------------------------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EE--------------------------------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence            10                                012334668999997666766654  35666667653322222222


Q ss_pred             cCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          261 HDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       261 ~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                      .-...+.|++.+++ .|+ +-...+.|..+|+.....  .. ...   ........+++..+ .++++-...+.|...|.
T Consensus       169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~--~~-~~~---~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR--QA-VVK---GSLPHPFALTLFED-ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE--C-------------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred             CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc--EE-EEe---CCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence            33457889999865 444 444567788887753211  11 111   11122345666655 44444445667877776


Q ss_pred             Ccc
Q 047728          339 ELN  341 (474)
Q Consensus       339 ~~~  341 (474)
                      .++
T Consensus       242 ~tg  244 (619)
T 3s94_A          242 YTG  244 (619)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.79  E-value=0.31  Score=44.64  Aligned_cols=238  Identities=13%  Similarity=0.045  Sum_probs=119.8

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee--ee----eecCcceeEEEecCC----CeEEEe---eCCCcE
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE--SV----IAHDDAVNSIVAGFD----GLVFTG---SADGTV  285 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~----~~~~~~v~~v~~~~~----~~l~~~---~~dg~i  285 (474)
                      .-...+.|+|.|++.++++--..|.|++++..+++...  .+    .........|+++|+    +.|++.   ..++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            45567899999999876665448999999866554321  11    123456789999985    444432   234455


Q ss_pred             EEEEcccCC----C-ceeeeeeeeee-cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCccc----
Q 047728          286 KVWRRELQG----K-GTKHFFSQTLL-KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELNL----  342 (474)
Q Consensus       286 ~iwd~~~~~----~-~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~----  342 (474)
                      .-|.+....    . .....+...+. ........|+|.|++.+.++.+.             .|.|.-++.+...    
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            555554311    1 11111111111 22234567999999987776542             3455555554321    


Q ss_pred             ---ccceeeeecceee-EEEEecCCEEEEEe-CCCcEEEEECCCCce----------------EEEEeecCCccceEEEE
Q 047728          343 ---SHGGVLRGHKLAI-LCLVTAGNLVFSGS-ADMSICIWRRKENEH----------------ICLSMLTGHSGPVKCLA  401 (474)
Q Consensus       343 ---~~~~~~~~~~~~v-~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~----------------~~~~~~~~h~~~v~~l~  401 (474)
                         .......+|.... +++.+++.+.++=. .|+.=.|--+..+..                ..+..+..+......++
T Consensus       190 Pf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~  269 (347)
T 3das_A          190 PFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA  269 (347)
T ss_dssp             SSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred             CCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence               0111223444333 66666665544321 222222222221110                01222222223556777


Q ss_pred             EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728          402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK  472 (474)
Q Consensus       402 ~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~  472 (474)
                      |.. +.        +++..-..+.|....+......   ......+.+...++..+    ...|||.+.+.
T Consensus       270 ~~~-g~--------~~~~~l~~~~l~~v~~~~~~~~---~~~e~~l~~~~gR~~dv----~~~pDG~lyv~  324 (347)
T 3das_A          270 YAE-GS--------VWMAGLRGERLWRIPLKGTAAA---ADPQAFLEGEYGRLRTV----APAGGDKLWLV  324 (347)
T ss_dssp             EET-TE--------EEEEESTTCSEEEEEEETTEES---SCCEEESTTTSSCEEEE----EEEETTEEEEE
T ss_pred             EEc-Cc--------eeeccccCCEEEEEEecCCcee---cceEEeecCCCCCccEE----EECCCCcEEEE
Confidence            763 33        4555555566666666543211   11122333444566777    66778887765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.73  E-value=0.14  Score=47.17  Aligned_cols=158  Identities=9%  Similarity=0.075  Sum_probs=86.4

Q ss_pred             ceeEEEecCCCeEEEee-------------CCCcEEEEEcccCCCceeeeeeee--eecccccEEEEEEcC--CCC--EE
Q 047728          264 AVNSIVAGFDGLVFTGS-------------ADGTVKVWRRELQGKGTKHFFSQT--LLKQECAVTALAISP--DAA--IV  324 (474)
Q Consensus       264 ~v~~v~~~~~~~l~~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~--~~~--~l  324 (474)
                      ...++.+.++|.+++++             .+|.|.++|+..............  ..........+.+.+  ++.  ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34566677777666655             689999999874322211111111  112345677777766  343  44


Q ss_pred             EEEcC--CCcEEEeecCcccccceee---eec---ceeeEEEEecCCEEEEEeC-----------------CCcEEEEEC
Q 047728          325 YCGSS--DGLVNFWERELNLSHGGVL---RGH---KLAILCLVTAGNLVFSGSA-----------------DMSICIWRR  379 (474)
Q Consensus       325 ~~~~~--dg~i~v~d~~~~~~~~~~~---~~~---~~~v~~~~~~~~~l~sgs~-----------------dg~i~iwd~  379 (474)
                      ++-..  +..|.+|+++.........   .+.   ...-..+.++|.+.++...                 .|.|.-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44333  4678888765432221222   111   1222556677877776541                 244555554


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                        ++.   ..+...-..-+.++|+||++.       +.++-+..+.|..|++..
T Consensus       211 --~~~---~~~~~~l~~pNGia~spDg~~-------lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 --NDV---RVVAEGFDFANGINISPDGKY-------VYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --TCC---EEEEEEESSEEEEEECTTSSE-------EEEEEGGGTEEEEEEECT
T ss_pred             --CeE---EEeecCCcccCcceECCCCCE-------EEEEeCCCCeEEEEEECC
Confidence              331   122222345789999999973       444555678899999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.63  E-value=0.66  Score=46.44  Aligned_cols=194  Identities=11%  Similarity=0.021  Sum_probs=115.0

Q ss_pred             cCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728          149 GLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS  225 (474)
Q Consensus       149 ~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  225 (474)
                      ....+|+|+  ++.|+ +-..++.|..++++.........                                ........
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~--------------------------------~g~~~P~G   84 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE--------------------------------FGLDYPEG   84 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------------------------------SSCSCCCE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe--------------------------------CCCCCcce
Confidence            457788887  45555 44567888888887543221110                                01134568


Q ss_pred             EEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC-CeEEEeeC--CCcEEEEEcccCCCceeeee
Q 047728          226 LSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVFTGSA--DGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       226 l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~  301 (474)
                      |++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|. +.|+....  .+.|...++.....      
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------  158 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------  158 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------
Confidence            8888765555554 45678999998654332222233455789999985 55555543  45666666653221      


Q ss_pred             eeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEEC
Q 047728          302 SQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRR  379 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~  379 (474)
                       ..+...-.....|++++++..|+.+. ..+.|..+|+.....  ..+.........+..++..|+... ..+.|...|.
T Consensus       159 -~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          159 -TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             -EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             -EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence             11122445688999999777666654 567899999876433  223222222344555555555555 5788888887


Q ss_pred             CCCc
Q 047728          380 KENE  383 (474)
Q Consensus       380 ~~~~  383 (474)
                      .+++
T Consensus       236 ~tg~  239 (628)
T 4a0p_A          236 TSGQ  239 (628)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            6554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.50  E-value=0.41  Score=42.46  Aligned_cols=224  Identities=17%  Similarity=0.155  Sum_probs=123.0

Q ss_pred             cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728          149 GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM  228 (474)
Q Consensus       149 ~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  228 (474)
                      ..|..|+......+.-. ||.|..|-.......-.      +.                          .....|..++.
T Consensus        24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~------p~--------------------------~~~~~i~~ia~   70 (282)
T 3qhy_B           24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM------PA--------------------------ATQSGVDAIAA   70 (282)
T ss_dssp             SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC------CG--------------------------GGGSCCCEEEE
T ss_pred             CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC------Cc--------------------------cCCCCEEEEEe
Confidence            36778877766555556 99999997665332210      00                          02235667766


Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ  308 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  308 (474)
                      .... .++. . ||.|..|-....-.+..-..-...|..++......++. . ||.|..|-.....+..      .....
T Consensus        71 G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg------~~~~~  139 (282)
T 3qhy_B           71 GNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTT------VPAEA  139 (282)
T ss_dssp             CSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTS------CCGGG
T ss_pred             CCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCC------CCccC
Confidence            5432 3333 4 89999997654322211111134677787765543333 4 9999999765433211      11122


Q ss_pred             cccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE
Q 047728          309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLS  388 (474)
Q Consensus       309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  388 (474)
                      ...|..++.......++  . ||.|..|-......+. ....-...+..++......+.- .||.|..|-.......  .
T Consensus       140 ~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gql--g  212 (282)
T 3qhy_B          140 QSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQT--T  212 (282)
T ss_dssp             GSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTT--C
T ss_pred             CCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCC--C
Confidence            34577776654433333  3 7999999765432221 1111234567777665555555 6999999976543211  1


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ........|..|+-.....        ++++   ||.|..|-....
T Consensus       213 ~p~~~~~~v~~i~~G~~h~--------~al~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          213 VPTEALSGVSAIASGEWYS--------LALK---NGKVIAWGSSRT  247 (282)
T ss_dssp             CCGGGGSSCCEEEECSSCE--------EEEE---TTEEEEESTTCC
T ss_pred             CCcccCCCceEEEcCCCEE--------EEEE---CCEEEEecCCCC
Confidence            1111223567776655443        3333   899999976654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.39  E-value=0.53  Score=42.48  Aligned_cols=190  Identities=8%  Similarity=0.080  Sum_probs=89.9

Q ss_pred             cCCCCEEEEEEC----CC-------cEEEEEcCCcceeeeeeec-CcceeEEEecCCCeEEEeeCC-------CcEEEEE
Q 047728          229 SEDQNLLYSASW----DK-------TFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLVFTGSAD-------GTVKVWR  289 (474)
Q Consensus       229 ~~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l~~~~~d-------g~i~iwd  289 (474)
                      ..++.+++.|+.    ++       .+.+||..+.+-...-... ...-.+++...+..++.|+.+       ..+.+||
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEe
Confidence            346677777773    11       1778888765533221111 111122333323366666653       2366777


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC------CCcEEEeecCcccccce-eeeecceeeEEEEecC
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS------DGLVNFWERELNLSHGG-VLRGHKLAILCLVTAG  362 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~  362 (474)
                      +....  ..  ..............+.  .++.+++.|+.      -..+.+||+.+..-... ..........+...++
T Consensus       134 ~~~~~--W~--~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~  207 (318)
T 2woz_A          134 PVAAK--WS--EVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG  207 (318)
T ss_dssp             TTTTE--EE--EECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred             CCCCC--Ee--ECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECC
Confidence            65321  11  1111111111111122  35667777764      23588899876532111 0111111123334567


Q ss_pred             CEEEEEeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC--------------
Q 047728          363 NLVFSGSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD--------------  423 (474)
Q Consensus       363 ~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D--------------  423 (474)
                      .+++.|+.+     ..+.+||..+.+...+..+.........+  .-++.        +++.|+.+              
T Consensus       208 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~--------i~v~GG~~~~~~~~~~~~~~~~  277 (318)
T 2woz_A          208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV--SLAGS--------LYAIGGFAMIQLESKEFAPTEV  277 (318)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE--EETTE--------EEEECCBCCBC----CCBCCBC
T ss_pred             EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE--EECCE--------EEEECCeeccCCCCceecccee
Confidence            777777643     35778999888765443333222222222  22444        66776654              


Q ss_pred             CcEEEEEccCC
Q 047728          424 KSVKMWRVSEQ  434 (474)
Q Consensus       424 g~i~vw~~~~~  434 (474)
                      ..|.+||+.+.
T Consensus       278 ~~v~~yd~~~~  288 (318)
T 2woz_A          278 NDIWKYEDDKK  288 (318)
T ss_dssp             CCEEEEETTTT
T ss_pred             eeEEEEeCCCC
Confidence            34777777664

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.34  E-value=0.56  Score=42.26  Aligned_cols=151  Identities=10%  Similarity=0.032  Sum_probs=74.5

Q ss_pred             CCCEEEEEECC--------CcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeC-C-----CcEEEEEcccCCC
Q 047728          231 DQNLLYSASWD--------KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSA-D-----GTVKVWRRELQGK  295 (474)
Q Consensus       231 ~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~  295 (474)
                      ++.+++.|+.+        ..+.+||..+.+-...-.... ..-.+++...+.+++.|+. +     ..+.+||+.... 
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE-
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe-
Confidence            45566666632        458899988764322111111 1112223332336666765 2     458888876431 


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCccccccee-eeecceeeEEEEecCCEEEEEe
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGS  369 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs  369 (474)
                         ...............++.+  ++++++.|+.++     .+.+||+.+..-.... .........++..++.+++.|+
T Consensus       177 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG  251 (315)
T 4asc_A          177 ---WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG  251 (315)
T ss_dssp             ---EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEE
T ss_pred             ---EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECC
Confidence               1111111111111222222  567777777654     4788888765321111 1111112233445677777777


Q ss_pred             CC--------------CcEEEEECCCCceEEE
Q 047728          370 AD--------------MSICIWRRKENEHICL  387 (474)
Q Consensus       370 ~d--------------g~i~iwd~~~~~~~~~  387 (474)
                      .+              ..+.+||+.+.+...+
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          252 FATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             ccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            53              2467888888775533

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.30  E-value=0.66  Score=42.68  Aligned_cols=242  Identities=10%  Similarity=0.019  Sum_probs=117.7

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee---eee----eecCcceeEEEecCC----CeEEEee-C------
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL---ESV----IAHDDAVNSIVAGFD----GLVFTGS-A------  281 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~----~~~~~~v~~v~~~~~----~~l~~~~-~------  281 (474)
                      -...+.|+|.|+++.|+++...|.|++++.. +...   ..+    .........|+++|+    +.|++.. .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3457899999999845556678999999853 3321   111    112345688999995    5444432 2      


Q ss_pred             -CCcEEEEEcccCCCc--eeeeeeeeee---cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCccc
Q 047728          282 -DGTVKVWRRELQGKG--TKHFFSQTLL---KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELNL  342 (474)
Q Consensus       282 -dg~i~iwd~~~~~~~--~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~  342 (474)
                       ...|..|++......  ....+.....   ........|+|.|++.++++.+.             .|.|.-++.+...
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             224555555422111  1111111111   11122467999999966555433             2457667765321


Q ss_pred             ------------ccceeeeeccee-eEEEEecCCEEEEEeCC--CcEEEEECCCCc------------------------
Q 047728          343 ------------SHGGVLRGHKLA-ILCLVTAGNLVFSGSAD--MSICIWRRKENE------------------------  383 (474)
Q Consensus       343 ------------~~~~~~~~~~~~-v~~~~~~~~~l~sgs~d--g~i~iwd~~~~~------------------------  383 (474)
                                  .......++..+ -+++.+....|+++...  +.=.|.-+..+.                        
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                        111223344433 36667633444444322  111222111111                        


Q ss_pred             -----eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728          384 -----HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP  458 (474)
Q Consensus       384 -----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  458 (474)
                           ...+..+.. ......++|....... .-...++++.-..+.|...++..+...    .....+......+..+ 
T Consensus       256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp-~~~g~l~v~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~rp~~v-  328 (353)
T 2g8s_A          256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFP-QWQQKLFIGALKDKDVIVMSVNGDKVT----EDGRILTDRGQRIRDV-  328 (353)
T ss_dssp             SCTTSCCCSEEESS-CCCEEEEEEECCSSSG-GGTTEEEEEETTTTEEEEEEEETTEEE----EEEEESGGGCCCEEEE-
T ss_pred             CCCCccCCeEEeCC-CcCcceeEEECCccCc-ccCCcEEEEEccCCEEEEEEeCCCeEe----eeEEcccCCCCceeEE-
Confidence                 001122222 2356778887533211 111126777667787887777643211    0111122222345566 


Q ss_pred             cCCCCCcCCceeec
Q 047728          459 YAPSFSSQGRICQK  472 (474)
Q Consensus       459 ~~p~~s~Dg~~l~~  472 (474)
                         ++.|||.+.+.
T Consensus       329 ---~~~pdG~lyv~  339 (353)
T 2g8s_A          329 ---RTGPDGYLYVL  339 (353)
T ss_dssp             ---EECTTSCEEEE
T ss_pred             ---EECCCCcEEEE
Confidence               67889988763

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.30  E-value=0.43  Score=44.52  Aligned_cols=148  Identities=11%  Similarity=0.099  Sum_probs=89.9

Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCcceeeeeeec----CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceee-----
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH----DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH-----  299 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----  299 (474)
                      ..++..++.+- ++.||.-++......+.++..    -..+..+..+|+|.+++-..+..|.|..+..+......     
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            44666666654 578888888755445555443    23678899999996555566778999988732211110     


Q ss_pred             -eeeeeee------cccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccceeee------e-----cceeeEEE
Q 047728          300 -FFSQTLL------KQECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHGGVLR------G-----HKLAILCL  358 (474)
Q Consensus       300 -~~~~~~~------~~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------~-----~~~~v~~~  358 (474)
                       .......      ....+|..+.|+|   .+..|++-..|+.|++||+.........+.      +     ......||
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence             0011111      1357899999999   567899999999999999986322111111      1     12223444


Q ss_pred             EecCCEEEEEe--CCCcEEEE
Q 047728          359 VTAGNLVFSGS--ADMSICIW  377 (474)
Q Consensus       359 ~~~~~~l~sgs--~dg~i~iw  377 (474)
                      ..++-.|+..+  .+|.|+-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            44555555544  77777644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.082  Score=48.19  Aligned_cols=109  Identities=9%  Similarity=-0.007  Sum_probs=64.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      ++.++.++.||.|.-.|..+++............   .+                     ......     .+.+..++.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p---~~---------------------~~~~~~-----~~~~~~~~v   60 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQP---LI---------------------EIQEPS-----RLETYETLI   60 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCC---SE---------------------ECCCSC-----TTTSSEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCC---cE---------------------EecCCc-----cccCCcEEE
Confidence            4578999999999999999888766554321000   00                     000000     012223443


Q ss_pred             E--ECCCcEEEEEcCCcceeeeeeec----CcceeE---EEe------cCCCeEEEeeCCCcEEEEEcccCCC
Q 047728          238 A--SWDKTFKVWRTSDYKCLESVIAH----DDAVNS---IVA------GFDGLVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       238 ~--s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~---v~~------~~~~~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      +  +.||.|..++..+|.....+...    ..++..   ..+      +.++.+++|+.+|.+...|+++++.
T Consensus        61 v~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           61 IEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             ECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             EEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence            3  58999999998888655443321    111111   001      1456899999999999999987654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.12  E-value=0.9  Score=42.53  Aligned_cols=234  Identities=10%  Similarity=0.069  Sum_probs=131.9

Q ss_pred             EEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcc-eeeeecccCcc
Q 047728          117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDAS-IHKRVGTLPTF  192 (474)
Q Consensus       117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~  192 (474)
                      .|..+.||.=. ..++.|+|++  ..+..+.-.. .|....|- .+.|+-.+.. .|.-|+++..... ..+....    
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~t-aVyHWsi~~~s~P~kvFdR~~----  146 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTDN-AVYHWSMEGESQPVKMFDRHS----  146 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECSS-EEEEEESSSSCCCEEEEECCG----
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcCC-eeEEecccCCCCchhheecch----
Confidence            34455555443 6789999965  3455555444 45566665 6666666544 6999999763221 1111100    


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-------CCCcEEEEEcCCcceeeeeeecCcce
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-------WDKTFKVWRTSDYKCLESVIAHDDAV  265 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~v  265 (474)
                                            .+  ....|.....+++.++++..+       -.|.+.+|..+. +.-+.+.+|....
T Consensus       147 ----------------------~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F  201 (494)
T 1bpo_A          147 ----------------------SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF  201 (494)
T ss_dssp             ----------------------GG--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEE
T ss_pred             ----------------------hc--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeee
Confidence                                  00  134566666777777776443       236788998765 4456677777665


Q ss_pred             eEEEecCCC----eEEEeeC---CCcEEEEEcccCCCceeee---eeee---eecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          266 NSIVAGFDG----LVFTGSA---DGTVKVWRRELQGKGTKHF---FSQT---LLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       266 ~~v~~~~~~----~l~~~~~---dg~i~iwd~~~~~~~~~~~---~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      ..+....+.    .+..+..   .+.++|-++.........+   ....   .....+-..++.+++....++.-+.-|.
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~  281 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence            555543222    2333333   2789999986431111111   0111   1123455678999999999999999999


Q ss_pred             EEEeecCcccccceeee-ecceeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728          333 VNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      |++||++++..+..... .....+.+-.....=++.....|.|.--.++..
T Consensus       282 i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            99999999876543221 111222222223344444445665555555443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.08  E-value=0.11  Score=43.85  Aligned_cols=107  Identities=7%  Similarity=-0.016  Sum_probs=64.5

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee------eeee--ecCcceeEEEecCCCeEEEeeCCCcEEEEEccc
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL------ESVI--AHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL  292 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~--~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~  292 (474)
                      ..+++++|+|++.+.++  .+|.+.-.+..+....      ..+-  +.. .-.++.|.+++.|.++ .||.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence            36779999998875555  6787776665442211      1110  111 2478999999966666 679888776432


Q ss_pred             CCCceeeeeee-ee--ecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728          293 QGKGTKHFFSQ-TL--LKQECAVTALAISPDAAIVYCGSSDGLVNF  335 (474)
Q Consensus       293 ~~~~~~~~~~~-~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v  335 (474)
                      ....  ...-. ..  ...=..+..|.+.|+|.+.++.  |+.++-
T Consensus       117 ~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          117 SDTD--NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             STTC--CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CCCC--ceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            2211  11111 11  1122467999999999988877  777543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.67  E-value=1.1  Score=39.77  Aligned_cols=221  Identities=13%  Similarity=0.159  Sum_probs=119.4

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      .|..++......+.-. ||.|..|-.+.  .+..-......|..|+......+.-. ||.|..|-.......-.      
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------   96 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV------   96 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC------
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC------
Confidence            3566666655443335 89999995321  11111112336777777755444445 99999997664332210      


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  269 (474)
                      |.                          .-...|..++...+  +.+.-. ||.|..|-....-.+.........|..++
T Consensus        97 P~--------------------------~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~  147 (282)
T 3qhy_B           97 PA--------------------------EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD  147 (282)
T ss_dssp             CG--------------------------GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred             Cc--------------------------ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE
Confidence            00                          01235777776544  333345 89999997654322221112234577777


Q ss_pred             ecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee
Q 047728          270 AGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR  349 (474)
Q Consensus       270 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  349 (474)
                      ......++. . ||.|..|-........      ........|..++.......++   .||.|+.|-......+. ...
T Consensus       148 ~G~~~~~~l-~-~G~v~~wG~n~~gqlg------~p~~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg-~p~  215 (282)
T 3qhy_B          148 GGVYTALAV-K-NGGVIAWGDNYFGQTT------VPAEAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTT-VPT  215 (282)
T ss_dssp             ECSSEEEEE-E-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTC-CCG
T ss_pred             cccCEEEEE-E-CCEEEEecCCCCCCCC------CceecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCC-CCc
Confidence            665543333 3 7999999765433211      0111134577777654433333   58999999755432221 111


Q ss_pred             ecceeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728          350 GHKLAILCLVTAGNLVFSGSADMSICIWRRKEN  382 (474)
Q Consensus       350 ~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~  382 (474)
                      .....+..++......++-. ||.|..|-....
T Consensus       216 ~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          216 EALSGVSAIASGEWYSLALK-NGKVIAWGSSRT  247 (282)
T ss_dssp             GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred             ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence            12234566666555444445 999999976543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.49  E-value=1.5  Score=40.27  Aligned_cols=47  Identities=9%  Similarity=0.075  Sum_probs=31.0

Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceEEEEee-cCCccceEEEEEeeCCc
Q 047728          361 AGNLVFSGSADMSICIWRRKENEHICLSML-TGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~  407 (474)
                      ++.++++.-..+.|...++..++......+ ......+..+++.||+.
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence            466777766778888888775542222222 22335789999999998

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=95.48  E-value=1.6  Score=40.64  Aligned_cols=253  Identities=12%  Similarity=0.079  Sum_probs=131.9

Q ss_pred             CEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728          150 LVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS  229 (474)
Q Consensus       150 ~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  229 (474)
                      .|..|+......+.-..||.|..|-....-.+-....                .. .... .....  -....+..++++
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~----------------~~-~~~p-~~v~~--~~~~~~~~v~i~  113 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT----------------ES-VSTP-TLLES--IQHVFIKKVAVN  113 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS----------------CC-EEEE-EECGG--GTTSCEEEEEEC
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc----------------CC-ccCC-EEccc--ccCCceeEEEEC
Confidence            4566666677778888999999996543211100000                00 0000 00000  012234556666


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCcc-----------eeeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC--
Q 047728          230 EDQNLLYSASWDKTFKVWRTSDYK-----------CLESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK--  295 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~--  295 (474)
                      ....+.+.-..||.|..|-....-           ....+.. ....|..|+.... ..++-..+|.|..|-.....+  
T Consensus       114 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG  192 (389)
T 3kci_A          114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWGKGRYGRLG  192 (389)
T ss_dssp             TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEECCGGGTTC
T ss_pred             cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeCCCCCCCcC
Confidence            666677777889999999653211           0111111 1225666665433 555567899999996543211  


Q ss_pred             ----ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEe
Q 047728          296 ----GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVT  360 (474)
Q Consensus       296 ----~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~  360 (474)
                          .....+..........|..++........++-..||.|+.|-....-.+           ..+.......+..++.
T Consensus       193 ~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~  272 (389)
T 3kci_A          193 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC  272 (389)
T ss_dssp             SSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred             CCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC
Confidence                0111111111122345777776554456666778999999964332111           0000111224666777


Q ss_pred             cCCEEEEEeCCCcEEEEECCCC---------ceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          361 AGNLVFSGSADMSICIWRRKEN---------EHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~---------~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      .....++-..||.|+.|-....         .......+.. ....|..|+....          ..+....||.|..|-
T Consensus       273 G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~----------h~~al~~~G~v~~wG  342 (389)
T 3kci_A          273 GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL----------HCVCCTEDGEVYTWG  342 (389)
T ss_dssp             ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS----------EEEEEETTCCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC----------eEEEECCCCCEEEee
Confidence            6777777788999999976321         0000111111 1234666655433          334446899999997


Q ss_pred             ccC
Q 047728          431 VSE  433 (474)
Q Consensus       431 ~~~  433 (474)
                      ...
T Consensus       343 ~n~  345 (389)
T 3kci_A          343 DND  345 (389)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.47  E-value=1.5  Score=40.16  Aligned_cols=69  Identities=14%  Similarity=0.131  Sum_probs=37.2

Q ss_pred             EEEecCCEEEEEeCC----------------------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccce
Q 047728          357 CLVTAGNLVFSGSAD----------------------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKR  414 (474)
Q Consensus       357 ~~~~~~~~l~sgs~d----------------------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~  414 (474)
                      +...++.+++.|+.+                      ..+.+||+.+.+...+..+......-.+  ..-+++       
T Consensus       248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~-------  318 (357)
T 2uvk_A          248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNS-------  318 (357)
T ss_dssp             EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTE-------
T ss_pred             EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCE-------
Confidence            455577777777732                      2578999988876655544433222222  234555       


Q ss_pred             EEEEEecCCC------cEEEEEccCCC
Q 047728          415 WILYSGSLDK------SVKMWRVSEQA  435 (474)
Q Consensus       415 ~~l~s~s~Dg------~i~vw~~~~~~  435 (474)
                       +++.|+.++      .|.++++++++
T Consensus       319 -i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          319 -LLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             -EEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             -EEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence             677777543      35555776653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.45  E-value=1.5  Score=40.20  Aligned_cols=48  Identities=15%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             ecCCEEEEEeCCCcEEEEECCCC-ceEEEEe-ecCCccceEEEEEeeCCc
Q 047728          360 TAGNLVFSGSADMSICIWRRKEN-EHICLSM-LTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       360 ~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~-~~~h~~~v~~l~~~~~~~  407 (474)
                      +++.++++.-..+.|...++... +...... +.+-...+.++++.||+.
T Consensus       275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~  324 (354)
T 3a9g_A          275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG  324 (354)
T ss_dssp             GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC
T ss_pred             cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc
Confidence            35667776667788888888753 2211122 223345789999999997

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.42  E-value=0.59  Score=42.74  Aligned_cols=147  Identities=16%  Similarity=0.076  Sum_probs=82.5

Q ss_pred             eeecCcceeEEEecCCCeEEEeeC-CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC---CCEEEEE---cCC
Q 047728          258 VIAHDDAVNSIVAGFDGLVFTGSA-DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD---AAIVYCG---SSD  330 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~---~~d  330 (474)
                      +...-...+.|+|.|++.++++.. .|.|++++.........................|+++|+   +..|++.   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333345678999999996666666 899999875432211000001122334667899999995   4455543   234


Q ss_pred             CcEEEeecCccc-------ccceee------eecceeeEEEEecCCEEEEEeC-------------CCcEEEEECCCC--
Q 047728          331 GLVNFWERELNL-------SHGGVL------RGHKLAILCLVTAGNLVFSGSA-------------DMSICIWRRKEN--  382 (474)
Q Consensus       331 g~i~v~d~~~~~-------~~~~~~------~~~~~~v~~~~~~~~~l~sgs~-------------dg~i~iwd~~~~--  382 (474)
                      +.|.-|......       ....++      ..|...-+.|.++|.+.++.+.             -|.|.-.+....  
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            556666554311       111111      2466666888899987777542             355555555432  


Q ss_pred             ------ceEEEEeecCCccceEEEEEeeCCc
Q 047728          383 ------EHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       383 ------~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                            ... + .-.+|.. ...++|+|++.
T Consensus       187 ~~nPf~~~~-i-~a~G~RN-p~Gla~dp~G~  214 (347)
T 3das_A          187 PGNPFPGSP-V-YSYGHRN-VQGLAWDDKQR  214 (347)
T ss_dssp             TTCSSTTCC-E-EEBCCSB-CCEEEECTTCC
T ss_pred             CCCCCCCCe-E-EeeCCCC-cceEEECCCCC
Confidence                  111 1 2235543 56899999876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.24  E-value=1.6  Score=39.18  Aligned_cols=150  Identities=13%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             CCCEEEEEECC-------CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeC------CCcEEEEEcccCCC
Q 047728          231 DQNLLYSASWD-------KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSA------DGTVKVWRRELQGK  295 (474)
Q Consensus       231 ~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~------dg~i~iwd~~~~~~  295 (474)
                      ++.+++.|+.+       ..+.+||..+.+-...-.... ..-.+++. .++ +++.|+.      -..+.+||+.... 
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence            55666777654       347888887754332211111 01112222 344 5566654      2358888876432 


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccc-eeeeecceeeEEEEecCCEEEEEe
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHG-GVLRGHKLAILCLVTAGNLVFSGS  369 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~sgs  369 (474)
                         ...............++.+  ++++++.|+.+     ..+.+||+.+..-.. ...........++..++.+++.|+
T Consensus       187 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  261 (318)
T 2woz_A          187 ---WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG  261 (318)
T ss_dssp             ---EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             ---EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECC
Confidence               1111111111111222222  56777777653     346788887653211 111111122233445677777776


Q ss_pred             CC--------------CcEEEEECCCCceEEE
Q 047728          370 AD--------------MSICIWRRKENEHICL  387 (474)
Q Consensus       370 ~d--------------g~i~iwd~~~~~~~~~  387 (474)
                      .+              ..+.+||..+.+...+
T Consensus       262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             BCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             eeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            54              4578889888775533

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.09  E-value=2.2  Score=40.71  Aligned_cols=110  Identities=10%  Similarity=0.087  Sum_probs=60.9

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee--eeee------cCcceeEEEecCC----CeEEEeeC------
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE--SVIA------HDDAVNSIVAGFD----GLVFTGSA------  281 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~------~~~~v~~v~~~~~----~~l~~~~~------  281 (474)
                      -...+.|+|.|+++++++-...+.|++++..+++...  .+..      .......|+++|+    +.|++...      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            3466799999999866654433478888765554322  2211      2345668999994    54444332      


Q ss_pred             -------CCcEEEEEcccCCCc--eeeeeeeeee-cccccEEEEEEcCCCCEEEEEcC
Q 047728          282 -------DGTVKVWRRELQGKG--TKHFFSQTLL-KQECAVTALAISPDAAIVYCGSS  329 (474)
Q Consensus       282 -------dg~i~iwd~~~~~~~--~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~  329 (474)
                             ...|.-|++......  ....+...+. ........|+|.|+|.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   124555554322111  1111111111 22345789999999987776543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.94  E-value=0.044  Score=50.02  Aligned_cols=145  Identities=13%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             CCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEE---ecCCCeEEEe--eCCCcEEEEEcccCCCceeeeeeeee
Q 047728          232 QNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIV---AGFDGLVFTG--SADGTVKVWRRELQGKGTKHFFSQTL  305 (474)
Q Consensus       232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~---~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (474)
                      +.+++.++.||.|.-+|..+|+....+.... .++....   ...++.++.+  +.||.|..++...+..  ........
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~--~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ--KLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE--EEEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE--Eeeecccc
Confidence            3478899999999999999999998886541 2222111   0013333333  6899999998765421  11111000


Q ss_pred             ecccccEEE---EEE-c----CCCCEEEEEcCCCcEEEeecCcccccceeeeeccee------eEEEE-------ecCCE
Q 047728          306 LKQECAVTA---LAI-S----PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA------ILCLV-------TAGNL  364 (474)
Q Consensus       306 ~~~~~~v~~---l~~-~----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~------v~~~~-------~~~~~  364 (474)
                      .....++..   ..+ .    ..+..+++|+.+|.+...|+++++.+.....+....      ..|..       ..+..
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence            111122221   000 0    145678889999999999999987665443322111      11111       12456


Q ss_pred             EEEEeCCCcEEEEE
Q 047728          365 VFSGSADMSICIWR  378 (474)
Q Consensus       365 l~sgs~dg~i~iwd  378 (474)
                      |+.|..+..+.+.+
T Consensus       168 v~ig~~~y~v~~~~  181 (339)
T 2be1_A          168 IVIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEEEECEECC
T ss_pred             EEEecceEEEEEEC
Confidence            77777777666666

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.91  E-value=2.7  Score=42.61  Aligned_cols=150  Identities=10%  Similarity=0.048  Sum_probs=79.2

Q ss_pred             CCCEEEEEECC------CcEEEEEcCCcceeee--eeecCcceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCceee
Q 047728          231 DQNLLYSASWD------KTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKGTKH  299 (474)
Q Consensus       231 ~~~~l~s~s~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~  299 (474)
                      ++.+++.|+.+      ..+.+||..+.+-...  +...... .+++...++ +++.|+.++  .+.+||.....    .
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~----W  525 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI----F  525 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE----E
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc----e
Confidence            66677777643      3578899887543221  2111111 223332245 777777655  68888876432    1


Q ss_pred             eeeee---eecccccEEEEEEcCC-CCEEEEEcC--C-----CcEEEeecCcccc-----cceeee---ecceeeEEEEe
Q 047728          300 FFSQT---LLKQECAVTALAISPD-AAIVYCGSS--D-----GLVNFWERELNLS-----HGGVLR---GHKLAILCLVT  360 (474)
Q Consensus       300 ~~~~~---~~~~~~~v~~l~~~~~-~~~l~~~~~--d-----g~i~v~d~~~~~~-----~~~~~~---~~~~~v~~~~~  360 (474)
                      .....   .........++.+..+ +.+++.|+.  +     ..+.+||+.+...     ......   .......+...
T Consensus       526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~  605 (695)
T 2zwa_A          526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI  605 (695)
T ss_dssp             EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE
T ss_pred             EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe
Confidence            11111   1111222233555555 667777765  2     3588899877651     111111   11112233344


Q ss_pred             c-CCEEEEEeC--------CCcEEEEECCCCceE
Q 047728          361 A-GNLVFSGSA--------DMSICIWRRKENEHI  385 (474)
Q Consensus       361 ~-~~~l~sgs~--------dg~i~iwd~~~~~~~  385 (474)
                      + +.+++.|+.        ...|.+||..+.+..
T Consensus       606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            5 777788874        356999999988754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.63  E-value=0.45  Score=40.06  Aligned_cols=106  Identities=7%  Similarity=-0.068  Sum_probs=59.7

Q ss_pred             eeEEEecCCCCEEEEEECCCcEEEEEcCCcceee------ee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC
Q 047728          223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE------SV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      -.++.|.+++.+.++  .||.|.-++-.+.....      .+ ..-=..+..|.+.|+|.|.+.. |+.+.-+.......
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~  166 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQ  166 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTT
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCC
Confidence            468899999977776  56988877653321111      11 1111467899999999777777 88854322211110


Q ss_pred             ceeee-eeeeee-cccccEEEEEEcCCCCEEEEEcCCCcEE
Q 047728          296 GTKHF-FSQTLL-KQECAVTALAISPDAAIVYCGSSDGLVN  334 (474)
Q Consensus       296 ~~~~~-~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~  334 (474)
                       .... ....+. ..-...+.+.|.+++.+.++.  ++.+.
T Consensus       167 -~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          167 -DNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             -CCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             -cccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence             0000 011111 223345557799999888776  66443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.57  E-value=2.9  Score=42.39  Aligned_cols=192  Identities=9%  Similarity=0.036  Sum_probs=95.9

Q ss_pred             CCCCEEEEEECC----CcEEEEEcCCcceeeee-e------ecCcceeEEEecC-CC-eEEEeeCCC------cEEEEEc
Q 047728          230 EDQNLLYSASWD----KTFKVWRTSDYKCLESV-I------AHDDAVNSIVAGF-DG-LVFTGSADG------TVKVWRR  290 (474)
Q Consensus       230 ~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~v~~~~-~~-~l~~~~~dg------~i~iwd~  290 (474)
                      -++.+++.|+.+    ..+.+||..+.+-...- .      .....-.+++... ++ .++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            356677777743    46888998876543222 1      1111122333332 55 667776543      4677877


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC--cEEEeecCcccccceee----eecce--eeEEEEec-
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG--LVNFWERELNLSHGGVL----RGHKL--AILCLVTA-  361 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~----~~~~~--~v~~~~~~-  361 (474)
                      ....    ............ -.+++...++.+++.|+.++  .+.+||..+..-.....    .....  ....+..+ 
T Consensus       476 ~t~~----W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          476 KTRE----WSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTTE----EEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CCCc----EEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            6421    111111111111 12233324788888887655  68999987653221110    00111  11222333 


Q ss_pred             CCEEEEEeC--C-----CcEEEEECCCCc------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC------
Q 047728          362 GNLVFSGSA--D-----MSICIWRRKENE------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL------  422 (474)
Q Consensus       362 ~~~l~sgs~--d-----g~i~iwd~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------  422 (474)
                      +.+++.|+.  +     ..+.+||+.+..      ...+.........-.+++...++.        +++.||.      
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~--------iyv~GG~~~~~~~  622 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK--------LLIVGGTSPSGLF  622 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE--------EEEECCBCSSCCC
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE--------EEEECCccCCCCC
Confidence            567777765  2     458899998876      333332110111111233333355        6777764      


Q ss_pred             --CCcEEEEEccCC
Q 047728          423 --DKSVKMWRVSEQ  434 (474)
Q Consensus       423 --Dg~i~vw~~~~~  434 (474)
                        ...|.+||+.+.
T Consensus       623 ~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          623 DRTNSIISLDPLSE  636 (695)
T ss_dssp             CTTTSEEEEETTTT
T ss_pred             CCCCeEEEEECCCC
Confidence              345888998765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.45  E-value=3  Score=39.83  Aligned_cols=107  Identities=10%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             cceeEEEecCCCeEEEeeCCC-cEEEEEcccCCCceeeeeeeeee--cccccEEEEEEcCC---CCEEEEEcC-------
Q 047728          263 DAVNSIVAGFDGLVFTGSADG-TVKVWRRELQGKGTKHFFSQTLL--KQECAVTALAISPD---AAIVYCGSS-------  329 (474)
Q Consensus       263 ~~v~~v~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~---~~~l~~~~~-------  329 (474)
                      ...+.|+|.|+|.|+++...+ .|++++...+.......+.....  .....+..|+|+|+   +..|++...       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            456799999999666666765 68888754222110000000110  13567889999995   555655542       


Q ss_pred             ------CCcEEEeecCccc----ccceee------eecceeeEEEEecCCEEEEEe
Q 047728          330 ------DGLVNFWERELNL----SHGGVL------RGHKLAILCLVTAGNLVFSGS  369 (474)
Q Consensus       330 ------dg~i~v~d~~~~~----~~~~~~------~~~~~~v~~~~~~~~~l~sgs  369 (474)
                            ...|.-|+.....    ....++      ..|...-+.+.++|.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  1345555543210    011111      136667788889998777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.70  E-value=4.3  Score=44.15  Aligned_cols=196  Identities=10%  Similarity=0.083  Sum_probs=111.0

Q ss_pred             EcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcc-eeeeecccCccc
Q 047728          118 AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDAS-IHKRVGTLPTFK  193 (474)
Q Consensus       118 ~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~  193 (474)
                      |..+.||.=. ..++.|+++.  ..+..+.-. ..|.-..|- .+.|+-.+. ..|.-|+++..... ..+...      
T Consensus        75 P~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~------  145 (1630)
T 1xi4_A           75 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRH------  145 (1630)
T ss_pred             CCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcc------
Confidence            4445555443 6789999864  445555443 356667776 555555544 46999999753211 101000      


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-------CCCcEEEEEcCCcceeeeeeecCccee
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-------WDKTFKVWRTSDYKCLESVIAHDDAVN  266 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~v~  266 (474)
                                          ..+  ....|..-..+++.++++..+       -.|.+.+|.++.+ ..+.+.+|.....
T Consensus       146 --------------------~~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~  202 (1630)
T 1xi4_A          146 --------------------SSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (1630)
T ss_pred             --------------------hhc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence                                000  134566666677777766443       3478889987653 3455566665544


Q ss_pred             EEEecCCC---eEEEeeC----CCcEEEEEcccCCCceeeee---e---eeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          267 SIVAGFDG---LVFTGSA----DGTVKVWRRELQGKGTKHFF---S---QTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       267 ~v~~~~~~---~l~~~~~----dg~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      .+......   .+++-..    .+.++|-++.....+...+.   .   ........-..++..++....++..+.-|.|
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~  282 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence            44332111   2332222    27899998854311111110   0   0111223445678888888889999999999


Q ss_pred             EEeecCcccccc
Q 047728          334 NFWERELNLSHG  345 (474)
Q Consensus       334 ~v~d~~~~~~~~  345 (474)
                      .+||+.++..+.
T Consensus       283 ~~~d~~t~~~i~  294 (1630)
T 1xi4_A          283 HLYDLETGTCIY  294 (1630)
T ss_pred             EEEecccchhhh
Confidence            999999986653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.47  E-value=6.4  Score=42.88  Aligned_cols=217  Identities=11%  Similarity=0.103  Sum_probs=114.4

Q ss_pred             CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEE
Q 047728          166 QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFK  245 (474)
Q Consensus       166 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  245 (474)
                      ...++.|+|+++.........                                 ...|.-=.|-.+ +.|+..+ +..|.
T Consensus        84 ag~~lQiFnl~~k~klks~~~---------------------------------~e~VvfWkWis~-~~l~lVT-~~aVy  128 (1630)
T 1xi4_A           84 AGKTLQIFNIEMKSKMKAHTM---------------------------------TDDVTFWKWISL-NTVALVT-DNAVY  128 (1630)
T ss_pred             cCCeEEEeehHHhhhhccccc---------------------------------CCCceEEEecCC-CeeEEEc-CCeEE
Confidence            467899999998765533321                                 123333344433 3455554 46699


Q ss_pred             EEEcCC-cceeeeeeec----CcceeEEEecCCC--eEEEee------CCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728          246 VWRTSD-YKCLESVIAH----DDAVNSIVAGFDG--LVFTGS------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAV  312 (474)
Q Consensus       246 iwd~~~-~~~~~~~~~~----~~~v~~v~~~~~~--~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  312 (474)
                      -|++.. ..+...+..|    ...|..-..+++.  .+++|-      -.|.+.+|..+...       .+.+.+|....
T Consensus       129 HW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-------sQ~iegha~~F  201 (1630)
T 1xi4_A          129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-------SQPIEGHAASF  201 (1630)
T ss_pred             EeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-------chhhhHhHhhh
Confidence            999964 2344444433    3456666667776  444443      35788899876432       34444554433


Q ss_pred             EEEEEcC--C-CCEEEEEcC---CCcEEEeecCcc---cc-c----ceeeeec----cee-eEEEEecCCEEEEEeCCCc
Q 047728          313 TALAISP--D-AAIVYCGSS---DGLVNFWERELN---LS-H----GGVLRGH----KLA-ILCLVTAGNLVFSGSADMS  373 (474)
Q Consensus       313 ~~l~~~~--~-~~~l~~~~~---dg~i~v~d~~~~---~~-~----~~~~~~~----~~~-v~~~~~~~~~l~sgs~dg~  373 (474)
                      ..+.+..  . ...++.+..   .+.++|.++...   .. .    ..+....    .-+ .+.++..-..++.-+.-|.
T Consensus       202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~  281 (1630)
T 1xi4_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (1630)
T ss_pred             heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence            3333321  1 112222211   267888887543   10 0    0011111    111 2444555678888999999


Q ss_pred             EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      |.+||+.++..+  ..-.-...+|...+-.....        =++.....|.|.--.+.+.
T Consensus       282 ~~~~d~~t~~~i--~~~ris~~~iF~~~~~~~~~--------g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          282 IHLYDLETGTCI--YMNRISGETIFVTAPHEATA--------GIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             EEEEecccchhh--hhccccCCceEEeccCCCCC--------ceEEEcCCceEEEEEEccc
Confidence            999999998743  33222334454444433322        2344446666655555544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.07  E-value=4.2  Score=39.43  Aligned_cols=128  Identities=12%  Similarity=-0.038  Sum_probs=76.9

Q ss_pred             CcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC-----c-eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          262 DDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK-----G-TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       262 ~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~-----~-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      ......+.++|||  .++.|--+.++.++|++....     . ...........-.-.....+|+++|....+-.-|..|
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence            3445678899999  556666789999999874211     0 0000111122234567889999999766677789999


Q ss_pred             EEeecCccc---------ccceeeeecceee-EEE------EecCCEEEEEe---CCCcE----------EEEECCCCce
Q 047728          334 NFWERELNL---------SHGGVLRGHKLAI-LCL------VTAGNLVFSGS---ADMSI----------CIWRRKENEH  384 (474)
Q Consensus       334 ~v~d~~~~~---------~~~~~~~~~~~~v-~~~------~~~~~~l~sgs---~dg~i----------~iwd~~~~~~  384 (474)
                      ..|++....         .+...+.-|-..- ...      .++|++|++..   .|..+          .+.|+...+.
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM  481 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEM  481 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCce
Confidence            999986531         1222222222221 211      35789999876   34443          6788876654


Q ss_pred             EEEEe
Q 047728          385 ICLSM  389 (474)
Q Consensus       385 ~~~~~  389 (474)
                      .++..
T Consensus       482 ~lv~D  486 (638)
T 3sbq_A          482 KLVHD  486 (638)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            44433

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=91.00  E-value=10  Score=35.43  Aligned_cols=288  Identities=9%  Similarity=0.042  Sum_probs=147.2

Q ss_pred             CcEEEEEEcCCEEEEeeCCCcEEEEeCCc--------------cccccccCccCEEEEEecCCEEEEEeCCC-eEEEEec
Q 047728          111 GHIYSLAAAGDLLYTGSDSKNIRVWKNQR--------------EFSGFKSNSGLVKAIVISNEKIFSGHQDG-KIRVWKV  175 (474)
Q Consensus       111 ~~i~~~~~~~~~l~tgs~dg~v~vwd~~~--------------~~~~~~~h~~~V~~i~~~~~~l~s~~~dg-~i~vwd~  175 (474)
                      ..|..++.-+...+.-..||.|..|=.+.              +..........|..|+.-....+.-..|+ .|..|-.
T Consensus        16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~   95 (406)
T 4d9s_A           16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGW   95 (406)
T ss_dssp             CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEEC
T ss_pred             cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcC
Confidence            35788888877777778899999993211              00000112336777877766666666664 8999965


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce-
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC-  254 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-  254 (474)
                      ...-..-....                ..  .....+...+  ....|..|+..  ..+.+.-..||.|+.|-....-. 
T Consensus        96 n~~GqLG~g~~----------------~~--~~~p~~v~~l--~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqL  153 (406)
T 4d9s_A           96 GDFGRLGHGNS----------------SD--LFTPLPIKAL--HGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQL  153 (406)
T ss_dssp             CGGGTTCSSSC----------------CC--EEEEEECGGG--TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred             CCCcCCCCCCC----------------Cc--cccceEeccc--CCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccC
Confidence            43211100000                00  0000000000  22356666654  34566667899999997543111 


Q ss_pred             ----------eeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC------ceeeeeeeeeecccccEEEEEE
Q 047728          255 ----------LESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK------GTKHFFSQTLLKQECAVTALAI  317 (474)
Q Consensus       255 ----------~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~l~~  317 (474)
                                ...+.. ....|..++.... ..++-..+|.|..|-.....+      .....+..........|..++.
T Consensus       154 G~g~~~~~~~p~~v~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~  232 (406)
T 4d9s_A          154 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC  232 (406)
T ss_dssp             CSSSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE
T ss_pred             CCCCCCCcccceEecccCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE
Confidence                      011111 1225666665433 555557899999996543221      1111111111112245666655


Q ss_pred             cCCCCEEEEEcCCCcEEEeecCcccccc-----------eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCC-c--
Q 047728          318 SPDAAIVYCGSSDGLVNFWERELNLSHG-----------GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKEN-E--  383 (474)
Q Consensus       318 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~-~--  383 (474)
                      .  ....++-..+|.|+.|-....-.+.           .+.......+..++......++-..||.|+.|-.... +  
T Consensus       233 G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG  310 (406)
T 4d9s_A          233 G--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG  310 (406)
T ss_dssp             C--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred             C--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCC
Confidence            4  3344455678899998643221110           0000112336667766777777788999999965421 1  


Q ss_pred             -------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          384 -------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       384 -------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                             ..+..........|..|+.-..          ..+.-..||.|..|=...
T Consensus       311 ~g~~~~~~~p~~v~~~~~~~v~~va~G~~----------hs~alt~~G~v~~wG~n~  357 (406)
T 4d9s_A          311 VGNNLDQCSPVQVRFPDDQKVVQVSCGWR----------HTLAVTERNNVFAWGRGT  357 (406)
T ss_dssp             SSSSSCEEEEEEECCGGGCCEEEEEECSS----------EEEEEETTSCEEEEECCT
T ss_pred             CCCCCCCccCEEEeccCCCcEEEEEeCCC----------eEEEEeCCCCEEEecCCC
Confidence                   1111111112234666655433          334445789999997654

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=90.92  E-value=9.9  Score=35.22  Aligned_cols=246  Identities=12%  Similarity=0.101  Sum_probs=126.2

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCcc----------c---cccc-cCccCEEEEEec--CCEEEEEeCCCeEEEEec
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQRE----------F---SGFK-SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKV  175 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~----------~---~~~~-~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~  175 (474)
                      .|..++......+.-..||.|..|-.+..          .   ..+. .....+..+.+.  ....+.-..||.|..|-.
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~  133 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE  133 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence            46667767777777778999999942210          0   0011 112234445554  567777789999999965


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-c-
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-K-  253 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~-  253 (474)
                      ......-....                ...  ........+  ....|..|+..  ..+.+.-..||.|..|-.... + 
T Consensus       134 n~~GqLG~g~~----------------~~~--~~p~~v~~l--~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqL  191 (389)
T 3kci_A          134 AEDGKLGHGNR----------------SPC--DRPRVIESL--RGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRL  191 (389)
T ss_dssp             CGGGTTCSSSC----------------CCE--EEEEECGGG--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTT
T ss_pred             CCCCcCCCCCC----------------ccC--cCCeEeccc--CCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCc
Confidence            43211100000                000  000000000  12246666553  345566678899999965321 1 


Q ss_pred             ---------eeeeeee-cCcceeEEEecCC-CeEEEeeCCCcEEEEEcccCCCc------eeeeeeeeeecccccEEEEE
Q 047728          254 ---------CLESVIA-HDDAVNSIVAGFD-GLVFTGSADGTVKVWRRELQGKG------TKHFFSQTLLKQECAVTALA  316 (474)
Q Consensus       254 ---------~~~~~~~-~~~~v~~v~~~~~-~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~l~  316 (474)
                               ....+.. ....|..++.... ...++-..||.|..|-.....+.      ....+..........|..++
T Consensus       192 G~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~  271 (389)
T 3kci_A          192 GHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE  271 (389)
T ss_dssp             CSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred             CCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEe
Confidence                     0011111 1235666666542 35666678999999965432110      11111111111222466665


Q ss_pred             EcCCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728          317 ISPDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE  381 (474)
Q Consensus       317 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~  381 (474)
                      ...  ...++-..+|.|+.|-......+           ..+.......+..++......++-..||.|+.|-...
T Consensus       272 ~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          272 CGS--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EET--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred             CCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence            543  34444568899999965332111           0011111234677777777777788999999997653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.41  E-value=9.2  Score=34.02  Aligned_cols=157  Identities=10%  Similarity=0.132  Sum_probs=83.0

Q ss_pred             EecCCCCEEEEEECC--------------CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee--CCCcEEEEE
Q 047728          227 SMSEDQNLLYSASWD--------------KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS--ADGTVKVWR  289 (474)
Q Consensus       227 ~~~~~~~~l~s~s~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~--~dg~i~iwd  289 (474)
                      -++++++.|+-+...              ..|+..++...+.. .+..  ...  ..+++++ .|+-..  .++.-.||.
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DPC--IYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SCE--EEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CCc--cEEEEeCCEEEEEeecCCCCceEEE
Confidence            346777777766542              35777777665432 2221  222  2455565 555444  455556665


Q ss_pred             cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728          290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG  368 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  368 (474)
                      +...+...     ..+..+..    .+++++++.|+-.+. ...|.+.++...... .+..+ ... ..+.|++.+|+-.
T Consensus       134 ~~~dGs~~-----~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~~-~~~-~~~~P~g~~iy~t  201 (302)
T 3s25_A          134 IRIDGEEK-----KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYDC-NCY-KPVVLDDTNVYYM  201 (302)
T ss_dssp             EETTSCCC-----EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEECS-CEE-EEEEEETTEEEEE
T ss_pred             EECCCCCe-----EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeCC-Ccc-ceeeecCCEEEEE
Confidence            55443321     11222211    356777887776655 567888887665432 22222 222 2356888888766


Q ss_pred             eCC--CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728          369 SAD--MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE  407 (474)
Q Consensus       369 s~d--g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  407 (474)
                      ..+  ..|..-++......   .+..  ..+  ..|+|++.
T Consensus       202 ~~~~~~~I~~~~ldG~~~~---~Lt~--~~~--~~~~~~g~  235 (302)
T 3s25_A          202 DVNRDNAIVHVNINNPNPV---VLTE--ANI--EHYNVYGS  235 (302)
T ss_dssp             EGGGTTEEEEECSSSCCCE---ECSC--SCE--EEEEEETT
T ss_pred             EcCCCcEEEEEECCCCCeE---EEeC--CCc--ceEEECCC
Confidence            543  35666666665532   2322  223  33677776

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=89.78  E-value=13  Score=34.81  Aligned_cols=243  Identities=9%  Similarity=-0.001  Sum_probs=129.4

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCc--------------cccccccCccCEEEEEecCCEEEEEeCCCeEEEEec--
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQR--------------EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKV--  175 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~--------------~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~--  175 (474)
                      .|..++..+...+.-..||.|..|-.+.              ...........|..|+......+.-..||.|..|-.  
T Consensus        76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~  155 (423)
T 3mvd_K           76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFR  155 (423)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred             CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence            4778888888888888899999994211              000111123467777777778888889999999985  


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL  255 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  255 (474)
                      ......-..     .....          ...+     .  ......|..|+..  ..+.+.-..||.|+.|-....-.+
T Consensus       156 n~~GqlG~~-----~~~~~----------~~p~-----~--~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqL  211 (423)
T 3mvd_K          156 DSHGNMGLT-----IDGNK----------RTPI-----D--LMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQL  211 (423)
T ss_dssp             CSSSEEESB-----TTBCE----------EEEE-----E--SSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred             CCCCCcCcC-----CCCCC----------ceee-----E--ecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCcc
Confidence            221111000     00000          0000     0  0123356666654  345566678999999964321110


Q ss_pred             -----------------------eeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc------eeeeeeeeee
Q 047728          256 -----------------------ESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG------TKHFFSQTLL  306 (474)
Q Consensus       256 -----------------------~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~  306 (474)
                                             .........|..++......++.-..+|.|..|-.....+.      ..... ....
T Consensus       212 G~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~-~p~~  290 (423)
T 3mvd_K          212 GRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFAL-TPIK  290 (423)
T ss_dssp             SSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEE-EEEE
T ss_pred             CCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceee-eeEE
Confidence                                   00011123455565543334444468999999975432211      00111 1111


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEecCCEEEEEeCCCcEE
Q 047728          307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVTAGNLVFSGSADMSIC  375 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~  375 (474)
                      .....|..++..  ....++-..+|.|+.|-....-.+           ......-...+..++......++-..||.|+
T Consensus       291 ~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~  368 (423)
T 3mvd_K          291 TELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLY  368 (423)
T ss_dssp             ECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred             cCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEE
Confidence            113456666554  334455567899999964322110           0011111125677777677777778999999


Q ss_pred             EEECCC
Q 047728          376 IWRRKE  381 (474)
Q Consensus       376 iwd~~~  381 (474)
                      .|=...
T Consensus       369 ~wG~n~  374 (423)
T 3mvd_K          369 SWGSGV  374 (423)
T ss_dssp             EEECCT
T ss_pred             EECCCC
Confidence            997643

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=88.22  E-value=17  Score=33.94  Aligned_cols=244  Identities=11%  Similarity=0.091  Sum_probs=127.2

Q ss_pred             cEEEEEEcCCEEEEeeCC-CcEEEEeCCcc--------------ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecC
Q 047728          112 HIYSLAAAGDLLYTGSDS-KNIRVWKNQRE--------------FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~d-g~v~vwd~~~~--------------~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~  176 (474)
                      .|..++......+.-..+ +.|+.|-.+..              ..........|..|+.-....+.-..||.|..|-..
T Consensus        69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n  148 (406)
T 4d9s_A           69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN  148 (406)
T ss_dssp             CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred             CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC
Confidence            578888876665555555 48999942210              001111233688888777788888899999999765


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce--
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--  254 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--  254 (474)
                      ....+-....                ..  .........+  ....|..++..  ..+.+.-..||.|+.|-....-.  
T Consensus       149 ~~GqLG~g~~----------------~~--~~~p~~v~~~--~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG  206 (406)
T 4d9s_A          149 QNGQLGLGDT----------------ED--SLVPQKIQAF--EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLG  206 (406)
T ss_dssp             TTSTTCSSSC----------------CC--EEEEEECGGG--TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTC
T ss_pred             CCccCCCCCC----------------CC--cccceEeccc--CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCC
Confidence            4322110000                00  0000000000  12246666554  34556667889999996432110  


Q ss_pred             ---------eeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc------eeeeeeeeeecccccEEEEEEc
Q 047728          255 ---------LESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG------TKHFFSQTLLKQECAVTALAIS  318 (474)
Q Consensus       255 ---------~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~l~~~  318 (474)
                               ...+.. ....|..++.... ..++-..+|.|..|-.....+.      ....+..........|..++..
T Consensus       207 ~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G  285 (406)
T 4d9s_A          207 LGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG  285 (406)
T ss_dssp             SSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred             CCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec
Confidence                     011111 1235666665433 4455578999999975432211      1111111111122346665554


Q ss_pred             CCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          319 PDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       319 ~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                        ....++-..||.|+.|-....-.+           ..+.......+..++.-....++-..||.|+.|=..
T Consensus       286 --~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n  356 (406)
T 4d9s_A          286 --WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRG  356 (406)
T ss_dssp             --SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred             --CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCC
Confidence              334445568899999964332111           111111223566777767777777889999999764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.66  E-value=15  Score=38.71  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI  259 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  259 (474)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            457778888888999999999999999999999888754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.33  E-value=23  Score=33.66  Aligned_cols=111  Identities=12%  Similarity=0.098  Sum_probs=61.0

Q ss_pred             cCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcc---eeeeee---e------cCcceeEEEecCC----CeEEEe-eC
Q 047728          220 FDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYK---CLESVI---A------HDDAVNSIVAGFD----GLVFTG-SA  281 (474)
Q Consensus       220 ~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~---~~~~~~---~------~~~~v~~v~~~~~----~~l~~~-~~  281 (474)
                      -..-+.|+|.|++. .|+++...|.|++++.....   .+..+.   .      .......|+++|+    +.|++. +.
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            34567999999986 56667789999999753221   111111   1      1346778999997    433322 21


Q ss_pred             --C----------CcEEEEEcccCC--C---ceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcCC
Q 047728          282 --D----------GTVKVWRRELQG--K---GTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSSD  330 (474)
Q Consensus       282 --d----------g~i~iwd~~~~~--~---~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d  330 (474)
                        +          ..|.-|.+....  .   .....+.... .........|+|.||+.+.++.+..
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence              1          133345543211  0   1111111111 2223457899999999877766543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.22  E-value=3.5  Score=39.96  Aligned_cols=128  Identities=8%  Similarity=-0.002  Sum_probs=74.8

Q ss_pred             cEEEeecCc----ccccceee-eecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCc-----------eEEEEeecCCc
Q 047728          332 LVNFWEREL----NLSHGGVL-RGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENE-----------HICLSMLTGHS  394 (474)
Q Consensus       332 ~i~v~d~~~----~~~~~~~~-~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~-----------~~~~~~~~~h~  394 (474)
                      .|.+.|.+.    .......+ .+....-+.++|||+++++++ .+.++.++|++...           ......... .
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-G  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-C
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-C
Confidence            366777665    22222222 222333477889999988776 57899999987321           111223332 2


Q ss_pred             cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC------CC--CCCCCcccccccCCCCCCCccccCCCCCcC
Q 047728          395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ------AP--PLVSTTQQHPLEGHGVAPNSLPYAPSFSSQ  466 (474)
Q Consensus       395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~------~~--~~~~~~~~~~~~~~~~~v~~l~~~p~~s~D  466 (474)
                      -.....+|.+++.        ...|.-.|..|.-|++...      +.  +.......+...+|.....    .-+-.+|
T Consensus       378 lGPlHt~Fd~~G~--------aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~----get~~~d  445 (638)
T 3sbq_A          378 LGPLHTTFDGRGN--------AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASL----CETNEAD  445 (638)
T ss_dssp             SCEEEEEECSSSE--------EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT----TTSTTCC
T ss_pred             CcccEEEECCCCc--------eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCC----CccCCCC
Confidence            3457788999986        6777789999999999753      11  1111122233334432222    2266889


Q ss_pred             Cceeec
Q 047728          467 GRICQK  472 (474)
Q Consensus       467 g~~l~~  472 (474)
                      |++|++
T Consensus       446 Gk~lv~  451 (638)
T 3sbq_A          446 GKWLVA  451 (638)
T ss_dssp             SCEEEE
T ss_pred             ccEEEE
Confidence            999876

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=82.98  E-value=29  Score=31.96  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=33.4

Q ss_pred             CCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee-----c--------CcceeEEEecCC--CeEEEeeCCC
Q 047728          221 DAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA-----H--------DDAVNSIVAGFD--GLVFTGSADG  283 (474)
Q Consensus       221 ~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~--------~~~v~~v~~~~~--~~l~~~~~dg  283 (474)
                      ..|.+|.+.| +...|+.+..++.|...+ ..++.-..+..     +        ...+.++.+.++  +.++++...+
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            4578899987 345566565455444332 22222222110     0        124788898886  4666666554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=82.38  E-value=26  Score=31.04  Aligned_cols=138  Identities=13%  Similarity=0.148  Sum_probs=73.0

Q ss_pred             EecCCCCEEEEEE--CC--CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeee
Q 047728          227 SMSEDQNLLYSAS--WD--KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       227 ~~~~~~~~l~s~s--~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .|+++++.|+-..  .+  ..|...++.. .....+..+..    ..+.+++ .|+ +......|.+-++....  ..  
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~--~~--  180 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS--EA--  180 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE--EE--
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC--EE--
Confidence            5677888888765  33  4455555543 33444444322    2345566 444 43335666666654322  11  


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCC--CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe--CCCcEEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSD--GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS--ADMSICI  376 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs--~dg~i~i  376 (474)
                         .+..  .... ..+.|++.+|+-....  ..|..-+++....  ..+..  ..+..+++++++|+-+.  ..+.|..
T Consensus       181 ---~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~~~~~~~g~~Iy~~~~~~~~~i~~  250 (302)
T 3s25_A          181 ---LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANIEHYNVYGSLIFYQRGGDNPALCV  250 (302)
T ss_dssp             ---EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCEEEEEEETTEEEEEECSSSCEEEE
T ss_pred             ---EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCcceEEECCCEEEEEECCCCcEEEE
Confidence               1111  1122 2456888887765543  3566666665432  22222  22356889998887653  2456777


Q ss_pred             EECCCCc
Q 047728          377 WRRKENE  383 (474)
Q Consensus       377 wd~~~~~  383 (474)
                      -++....
T Consensus       251 ~~~DG~~  257 (302)
T 3s25_A          251 VKNDGTG  257 (302)
T ss_dssp             EETTSCC
T ss_pred             EECCCCc
Confidence            7776554

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=81.89  E-value=28  Score=30.99  Aligned_cols=192  Identities=16%  Similarity=0.119  Sum_probs=101.5

Q ss_pred             CCCEEEEEECCCcEEEEEcCCcceee---------eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcc---cCCCcee
Q 047728          231 DQNLLYSASWDKTFKVWRTSDYKCLE---------SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRE---LQGKGTK  298 (474)
Q Consensus       231 ~~~~l~s~s~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~  298 (474)
                      +...+++.+.+|.|+--.+.+.+...         .++..+.-+..+.......++..+..|.+.-+...   .......
T Consensus         2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~   81 (307)
T 1zi0_A            2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR   81 (307)
T ss_dssp             CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred             CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence            45678889999999887765433211         12222223333334444477778888887666543   2221111


Q ss_pred             eeeee---eeecccccEEEEEE-c--CCCCEEEEEcCCCcEEEeecCcccccc--e----eeeecceeeEEE--EecCCE
Q 047728          299 HFFSQ---TLLKQECAVTALAI-S--PDAAIVYCGSSDGLVNFWERELNLSHG--G----VLRGHKLAILCL--VTAGNL  364 (474)
Q Consensus       299 ~~~~~---~~~~~~~~v~~l~~-~--~~~~~l~~~~~dg~i~v~d~~~~~~~~--~----~~~~~~~~v~~~--~~~~~~  364 (474)
                      .....   .+ .....|..+.. .  .++.+++..+..|.++...+..-....  .    .+..+ ..+..+  ......
T Consensus        82 G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~  159 (307)
T 1zi0_A           82 GRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE  159 (307)
T ss_dssp             CEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred             CeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence            11111   12 23344555543 2  356678889999999988664221110  0    11122 233222  224567


Q ss_pred             EEEEeCCCcEEEEECCCCc-------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          365 VFSGSADMSICIWRRKENE-------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       365 l~sgs~dg~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ++..+.+|.+..++...-.       -.....+. -...|.++....++.        .|+..+..|.++-.++..
T Consensus       160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~--------~ll~~T~~G~~Kr~~~~e  226 (307)
T 1zi0_A          160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDG--------AILTATQNGYGKRTAVAE  226 (307)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSC--------EEEEEETTSEEEEECGGG
T ss_pred             EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCC--------EEEEEEcCCceEEEEHHH
Confidence            8888889998888764211       11111222 234566665544444        677888899999888755

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=81.38  E-value=29  Score=30.92  Aligned_cols=195  Identities=15%  Similarity=0.077  Sum_probs=105.5

Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCcceee---------eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc---
Q 047728          229 SEDQNLLYSASWDKTFKVWRTSDYKCLE---------SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG---  296 (474)
Q Consensus       229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~---  296 (474)
                      -++...+++.+.+|.|+--.+...+...         .++..+.-+..+.......++..+..|.++-+....-...   
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            3456788899999999988765432211         1222222333333444447888888998877765421110   


Q ss_pred             eeeee---eeeeecccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccc------eeeeecceeeEEEE--ecC
Q 047728          297 TKHFF---SQTLLKQECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHG------GVLRGHKLAILCLV--TAG  362 (474)
Q Consensus       297 ~~~~~---~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~------~~~~~~~~~v~~~~--~~~  362 (474)
                      .....   ...+. ....|..+...+   +..+|+..+..|.++...+..-....      ..+.. ...+..+.  ...
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence            00000   11122 233444443332   46678888999999987764321110      01111 22232222  246


Q ss_pred             CEEEEEeCCCcEEEEECCCC-------ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          363 NLVFSGSADMSICIWRRKEN-------EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       363 ~~l~sgs~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..++..+.+|.+..+....-       .-.....+.. ...|..+....++.        .|++.+..|..+...+..-
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~--------~l~~vt~~G~~kr~~~~e~  232 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENP--------YLLIVSENGYGKRLNMSKI  232 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCS--------EEEEEETTSEEEEEEGGGS
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCC--------eEEEEECCCceEEEEHHHh
Confidence            67888999999999987531       1111222332 34566665554444        5778888999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	474
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 9e-23
 Identities = 62/320 (19%), Positives = 114/320 (35%), Gaps = 50/320 (15%)

Query: 144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK 201
              +   V  ++       + S  +D  I+VW   +          TL    D ++    
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISF 67

Query: 202 PSNYIEVRRHRNGLWIKHFD---------------AISSLSMSEDQNLLYSASWDKTFKV 246
             +   +      + IK +D                +SS+S+  + + + SAS DKT K+
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVW-------RRELQGKGTK 298
           W      C+++   H + V  +    DG L+ + S D TV+VW       + EL+     
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 299 HFF-------SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH 351
                     S + + +               +  GS D  +  W+          L GH
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLVGH 246

Query: 352 KLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409
              +  ++  + G  + S + D ++ +W  K     C+  L  H   V  L   K     
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHKTAP-- 302

Query: 410 SREKRWILYSGSLDKSVKMW 429
                  + +GS+D++VK+W
Sbjct: 303 ------YVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.3 bits (204), Expect = 3e-18
 Identities = 44/310 (14%), Positives = 97/310 (31%), Gaps = 49/310 (15%)

Query: 110 EGH---IYSLA--AAGDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEKIF 162
            GH   +  +       ++ + S+   I+VW  +        K ++  V+ I   +    
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 163 SGHQDGKIRVWKVSSKDASIHKRV----------GTLPTFKDFIKCSMKPSNYIEVRRHR 212
                  + +     +     + +            +P     +  S   +  +   +  
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 213 NGLWI--KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA 270
             +     H + +  +  ++D  L+ S S D+T +VW  +  +C   +  H   V  I  
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193

Query: 271 GFDG---------------------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE 309
             +                       + +GS D T+K+W               TL+  +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------TGMCLMTLVGHD 247

Query: 310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFS 367
             V  +        +   + D  +  W+ + N      L  H+  +  L        V +
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

Query: 368 GSADMSICIW 377
           GS D ++ +W
Sbjct: 307 GSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 1e-16
 Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 23/223 (10%)

Query: 120 GDLLYTGSDSKNIRVWKNQREFSGFK----SNSGLVKAIVISNEKIFSGHQDGKIRVWKV 175
           GD + + S  K I++W+ Q  +             +         I S   D  +RVW V
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

Query: 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL 235
           ++               K  ++        I      +   I       +    +    L
Sbjct: 173 AT------------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 220

Query: 236 YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG 294
            S S DKT K+W  S   CL +++ HD+ V  ++    G  + + + D T++VW  +   
Sbjct: 221 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--- 277

Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
                   +TL   E  VT+L     A  V  GS D  V  WE
Sbjct: 278 NKRCM---KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 4e-14
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 29/258 (11%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
           H   ++ +      +++ SAS D T KVW         ++  H D+V  I     G +  
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
                +                  +T+   +  V++++I P+   +   S D  +  WE 
Sbjct: 76  -----SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 339 ELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP 396
           +          GH+  +  +     G L+ S S D ++ +W     E  C + L  H   
Sbjct: 131 Q-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHRHV 187

Query: 397 VKCLAVEKDDE------------SLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQ 444
           V+C++   +                S +    L SGS DK++KMW VS            
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-------L 240

Query: 445 HPLEGHGVAPNSLPYAPS 462
             L GH      + +   
Sbjct: 241 MTLVGHDNWVRGVLFHSG 258

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 9/154 (5%)

Query: 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG 362
             L      VT +   P  +++   S D  +  W+ E        L+GH  ++  +    
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDH 69

Query: 363 NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422
           +     S    + I         C+  + GH   V  +++  +           + S S 
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG--------DHIVSASR 121

Query: 423 DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS 456
           DK++KMW V         T  +  +       + 
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 155

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 6e-20
 Identities = 51/293 (17%), Positives = 95/293 (32%), Gaps = 30/293 (10%)

Query: 110 EGH---IYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVISNE--- 159
            GH   IY++       LL + S    + +W      +       S  V     +     
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 160 ------------KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIE 207
                             +       +++     +                    + +  
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 208 VRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS 267
               +   +  H   + SLS++ D  L  S + D + K+W   +  C ++   H+  +N+
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231

Query: 268 IVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326
           I    +G    TGS D T +++      +   +          C +T+++ S    ++  
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN----IICGITSVSFSKSGRLLLA 287

Query: 327 GSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
           G  D   N W+        GVL GH   + CL     G  V +GS D  + IW
Sbjct: 288 GYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 9e-17
 Identities = 55/329 (16%), Positives = 107/329 (32%), Gaps = 48/329 (14%)

Query: 125 TGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASI 182
              D       + +R   G   +   + A+     +  + S  QDGK+ +W   +     
Sbjct: 35  NNIDPVGRIQMRTRRTLRG---HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT----- 86

Query: 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS--------------- 227
             +V  +P    ++       +   V           ++  +                  
Sbjct: 87  TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146

Query: 228 ---MSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG 283
                 D N + ++S D T  +W     +   +   H   V S+    D  L  +G+ D 
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206

Query: 284 TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS 343
           + K+W         +    QT    E  + A+   P+      GS D     ++   +  
Sbjct: 207 SAKLWDVR------EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Query: 344 HGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL 400
                  + +  +  V+   +G L+ +G  D +  +W   + +     +L GH   V CL
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCL 318

Query: 401 AVEKDDESLSREKRWILYSGSLDKSVKMW 429
            V  D           + +GS D  +K+W
Sbjct: 319 GVTDDGM--------AVATGSWDSFLKIW 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.7 bits (205), Expect = 3e-18
 Identities = 60/404 (14%), Positives = 117/404 (28%), Gaps = 46/404 (11%)

Query: 58  FAIAQDGSPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGF------SPNVLIGSLVREEG 111
           + +  +    H+    PF      +  V        +D +       P  +   L +   
Sbjct: 2   YLVPYNQRANHSKPIPPFLLD-LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLD 60

Query: 112 H---IYSLA--AAGDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVISNEKIFSG 164
           H   +  +     G+ L TG + K  +V++  +    +    +S   K     N      
Sbjct: 61  HTSVVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 165 HQDGKIRVWKVS-SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223
                  +  V  S D             + +   + K    ++                
Sbjct: 120 SDLY---IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176

Query: 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADG 283
             +S S D+ +           +  + +       ++          G    +  GS D 
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP---------GDGKYIAAGSLDR 227

Query: 284 TVKVWR-RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342
            V+VW              +++    + +V ++  + D   V  GS D  V  W  +   
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287

Query: 343 SHGGVLRGHKLAI-------------LCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
           +       +                 +        + SGS D  +  W +K      L M
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--PLLM 345

Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
           L GH   V  +AV  +  SL  E      +GS D   ++W+  +
Sbjct: 346 LQGHRNSVISVAV-ANGSSLGPEYNVFA-TGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 241 DKTFKVWRTSDYKC----LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWR------- 289
           +  + ++  +  +     L   + H   V  +    DG       + T +V+R       
Sbjct: 37  NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLV 96

Query: 290 RELQGKGTKHFFSQTLLKQEC-----AVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344
             L      +   + L           + ++  SPD   +  G+ D L+  W+ E     
Sbjct: 97  ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE----- 151

Query: 345 GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404
                   + IL                   +    +       + TG       +    
Sbjct: 152 ----NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV 207

Query: 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS 462
              ++S      + +GSLD++V++W            ++     GH  +  S+ +   
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 3e-17
 Identities = 66/338 (19%), Positives = 120/338 (35%), Gaps = 32/338 (9%)

Query: 110 EGH----IYSLAAAGDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEKIFS 163
           +GH    I  L   G+ + +GSD   ++VW     +       ++G V +  + +  I S
Sbjct: 13  KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 164 GHQDGKIRVWKVSSKDASIHKRVGTLP------TFKDFIKCSMKPSNYIEVRRHRNGLWI 217
           G  D  ++VW   + +        T          K  +  S   +  +        L +
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV 276
                 +   +  D   + S ++D   KVW      CL ++  H +        FDG  V
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHV 190

Query: 277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW 336
            +GS D +++VW  E            TL   +   + + +  +  I+  G++D  V  W
Sbjct: 191 VSGSLDTSIRVWDVE------TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIW 242

Query: 337 E--RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC---LSMLT 391
           +      L        H+ A+ CL    N V + S D ++ +W  K  E I         
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
           G  G V  +         +   R    +G+ +  + + 
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSR----NGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 5e-12
 Identities = 64/330 (19%), Positives = 109/330 (33%), Gaps = 43/330 (13%)

Query: 153 AIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS-----------MK 201
            +     +I SG  D  ++VW   +      K + TL      +  S             
Sbjct: 22  CLQFCGNRIVSGSDDNTLKVWSAVT-----GKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76

Query: 202 PSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH 261
            +  +        +   +    +   M   +  + S S D T +VW     +CL  ++ H
Sbjct: 77  RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136

Query: 262 DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
             AV  +      +V   + D  VKVW  E            TL  Q       ++  D 
Sbjct: 137 VAAVRCVQYDGRRVVSG-AYDFMVKVWDPE------TETCLHTL--QGHTNRVYSLQFDG 187

Query: 322 AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE 381
             V  GS D  +  W+ E   +    L GH+     +    N++ SG+AD ++ IW  K 
Sbjct: 188 IHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 246

Query: 382 NEHICL-SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS 440
            + +        H   V CL   K+           + + S D +VK+W +       + 
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKN----------FVITSSDDGTVKLWDLKTGE--FIR 294

Query: 441 TTQQHPLEGHGVAPNSLPYAPSFSSQGRIC 470
                   G G     +      S+   +C
Sbjct: 295 NLVTLESGGSGGVVWRI----RASNTKLVC 320

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 9e-10
 Identities = 55/239 (23%), Positives = 79/239 (33%), Gaps = 23/239 (9%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
           H D + +  +    N + S S D T KVW     KCL +++ H   V S           
Sbjct: 15  HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-------- 65

Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
              +  +                           T   +      V  GS D  +  W+ 
Sbjct: 66  -RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124

Query: 339 ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVK 398
           E       VL GH  A+ C+   G  V SG+ D  + +W        CL  L GH+  V 
Sbjct: 125 ETG-QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP--ETETCLHTLQGHTNRVY 181

Query: 399 CLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSL 457
            L  +             + SGSLD S+++W V         T  Q    G  +  N L
Sbjct: 182 SLQFDGI----------HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL 230

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 45/210 (21%), Positives = 78/210 (37%), Gaps = 23/210 (10%)

Query: 247 WRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306
           WR  + K  + +  HDD V + +      + +GS D T+KVW     GK       +TL+
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAV-TGK-----CLRTLV 54

Query: 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVF 366
                V +  +  +  I         V   E    +       GH   + C+      V 
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL---YGHTSTVRCMHLHEKRVV 111

Query: 367 SGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV 426
           SGS D ++ +W  +  + +   +L GH   V+C           +     + SG+ D  V
Sbjct: 112 SGSRDATLRVWDIETGQCLH--VLMGHVAAVRC----------VQYDGRRVVSGAYDFMV 159

Query: 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNS 456
           K+W    +    + T Q H    + +  + 
Sbjct: 160 KVWDPETETC--LHTLQGHTNRVYSLQFDG 187

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.4 bits (186), Expect = 1e-15
 Identities = 50/389 (12%), Positives = 116/389 (29%), Gaps = 73/389 (18%)

Query: 110 EGH---IYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGL---------------- 150
           + H   I+S++A      + S    ++VW N+   +    +                   
Sbjct: 11  KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 151 -VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK------CSMKPS 203
            ++        + +    G +  ++++ +D +       L      +K           S
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD 263
           N   +        +K    I       D++   + +W  T ++  T     +ES +    
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-----VESPMTPSQ 185

Query: 264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAI 323
              S+     GL+ TG  +GTV++                +++    ++ ++  SP  ++
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 324 VYCGSSDGLVNFW-------ERELNLSHGGVLRGHKLAILCLVTA----------GNLVF 366
           +                      +                   ++          G  + 
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305

Query: 367 SGSADMSICIWRRKENEHICLSMLTGHSGPVKC----LAVEKDDESLSREKRW------- 415
           S   D  +  W  K  E   ++ L  H   ++     LAV++  +SL+    +       
Sbjct: 306 SAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 363

Query: 416 ------------ILYSGSLDKSVKMWRVS 432
                        L    LD+S++ +R +
Sbjct: 364 GWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 45/371 (12%), Positives = 93/371 (25%), Gaps = 70/371 (18%)

Query: 142 SGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK 201
           +  K++   + ++   N    S   DG ++VW     D    K                 
Sbjct: 8   NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKS-------------- 53

Query: 202 PSNYIEVRRHRNGLWIKHFDAISSLSM-SEDQNLLYSASWDKTFKVWRTSDYKCLESVIA 260
                      +   + H D + ++   + +  L+ + S+      +R +     + VI 
Sbjct: 54  ------YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

Query: 261 HDD----------AVNSIVAGFDG------LVFTGSADGTVKVWRRELQGKGTKHF---- 300
                        +  ++  G          +      GT  +W+       +       
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167

Query: 301 --------FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK 352
                     ++ +      T++ IS    I   G ++G V   E             H 
Sbjct: 168 SPTLELQGTVESPMTPSQFATSVDISERGLIA-TGFNNGTVQISELSTLRPLYNFESQHS 226

Query: 353 LAILCLV-------TAGNLVFSGSADMSICIWRRKENEHI-CLSMLTGHSGPVKCLAVEK 404
           +               G+L+       S       E E    +  L+  +   +    E 
Sbjct: 227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 286

Query: 405 DDESL-----SREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY 459
              S        +    L S   D  ++ W V        +  +   L  H         
Sbjct: 287 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK-------TKERITTLNMHCDDIEIEED 339

Query: 460 APSFSSQGRIC 470
             +    G   
Sbjct: 340 ILAVDEHGDSL 350

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 2e-14
 Identities = 51/284 (17%), Positives = 92/284 (32%), Gaps = 28/284 (9%)

Query: 113 IYSLAAAGDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKI 170
           +Y L      + +G     I++W             ++G V  +      I +G  D  +
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 77

Query: 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY---------IEVRRHRNGLWIKHFD 221
           RVW V++ +                    M  +           +          +    
Sbjct: 78  RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 137

Query: 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA 281
             +   +  D   + SAS D+T KVW TS  + + ++  H   +  +    D LV +GS+
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSS 196

Query: 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE---- 337
           D T+++W  E           + L++            D   +  G+ DG +  W+    
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIR--------FDNKRIVSGAYDGKIKVWDLVAA 248

Query: 338 ----RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIW 377
                         L  H   +  L      + S S D +I IW
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 8e-13
 Identities = 57/309 (18%), Positives = 107/309 (34%), Gaps = 34/309 (11%)

Query: 136 KNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDA----SIHKRVGTLPT 191
            + +        S  V  +   ++KI SG +D  I++W  ++ +     + H        
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRT 249
           + + +  +    + + V     G  +          +    N     +   D++  VW  
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 250 SDYKCLESVIAHDDAVNSIVAGF--DGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK 307
           +    +           ++      D  + + S D T+KVW            F +TL  
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS------TCEFVRTLNG 176

Query: 308 QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFS 367
            +  +  L       +V  GSSD  +  W+ E   +   VL GH+  + C+      + S
Sbjct: 177 HKRGIACLQYRDR--LVVSGSSDNTIRLWDIE-CGACLRVLEGHEELVRCIRFDNKRIVS 233

Query: 368 GSADMSICIW-------RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG 420
           G+ D  I +W        R     +CL  L  HSG V  L  ++            + S 
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF----------QIVSS 283

Query: 421 SLDKSVKMW 429
           S D ++ +W
Sbjct: 284 SHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 43/287 (14%), Positives = 71/287 (24%), Gaps = 61/287 (21%)

Query: 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF 277
           +    +  L    D   + S   D T K+W  +  +C   +  H  +V  +      ++ 
Sbjct: 13  ETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 278 TGS---------------------------------------ADGTVKVWRRELQGKGTK 298
             S                                        D ++ VW        T 
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL 358
                             +  D   +   S D  +  W           L GHK  I CL
Sbjct: 131 RRVLVGHRAAVN-----VVDFDDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIACL 184

Query: 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418
                LV SGS+D +I +W  +    + +                             + 
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR------------FDNKRIV 232

Query: 419 SGSLDKSVKMWRVSEQAPPLVSTTQQ--HPLEGHGVAPNSLPYAPSF 463
           SG+ D  +K+W +     P           L  H      L +    
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ 279

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 41/363 (11%), Positives = 104/363 (28%), Gaps = 56/363 (15%)

Query: 113 IYSLA--AAGDLLYTGSDSKNIRVW----KNQREFSGFKSNSGLVKAIVIS--NEKIFSG 164
           I   A       +    ++  + ++        +    K ++G V  +  +  + +I + 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHR------------ 212
             D    VW +  +       +  +      ++ +     +      R            
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 213 ----NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD----------------- 251
                 +       + SL    +  LL + S D   +++                     
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 252 -YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE 309
             + +    +    V+ +    +G  V   S D TV +   +      K     TL  + 
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD------KKMAVATLASET 243

Query: 310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS 369
             + A+    ++++V  G     V F     + + G +  G +L +    +   L     
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFT---YDSAAGKLSFGGRLDVPKQSSQRGLTARER 300

Query: 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
                     + +      + + H   V  ++V    ++   +      +  +D  + +W
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ----FCTTGMDGGMSIW 356

Query: 430 RVS 432
            V 
Sbjct: 357 DVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDG-L 275
             + IS  + ++D+  +     +    ++    + +  +  +  H+  V  +    D   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 276 VFTGSADGTVKVW 288
           + T   D    VW
Sbjct: 66  IVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 311 AVTALAISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTA--GNLVFS 367
            ++  A + D   +    ++  V+ +E+  N       L+ H   +  +  A   N + +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 368 GSADMSICIWRRKENEHIC 386
              D +  +W  K      
Sbjct: 69  CGTDRNAYVWTLKGRTWKP 87

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 263 DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
           + ++      D   +     +  V ++ +     G K      L +    VT +  +PD+
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKS----GNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 322 AIVYCGSSDGLVNFWE 337
             +    +D     W 
Sbjct: 64  NRIVTCGTDRNAYVWT 79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 8e-11
 Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 2/92 (2%)

Query: 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
                   + V +        H   + SL  +       S   D     WRT     +  
Sbjct: 243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-F 301

Query: 258 VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVW 288
                 +V S     D   + TGS D    V+
Sbjct: 302 QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 7e-10
 Identities = 48/348 (13%), Positives = 85/348 (24%), Gaps = 51/348 (14%)

Query: 96  GFSPNVLIGS-------LVREEGH---IYSLA--AAGDLLYTGSDSKNIRVWKNQREFSG 143
            F P+ LIG         +    H   + ++        +YTG     ++VW      + 
Sbjct: 27  PFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNK 85

Query: 144 FKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203
              +           +       D  IR  K+           G                
Sbjct: 86  SPVS-----------QLDCLNR-DNYIRSCKLLPD--------GCTLIVGGEASTLSIWD 125

Query: 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD 263
                 R +  L        +     + +      S          +     +     D 
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185

Query: 264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAI 323
           A    ++     ++TG  D TV+ W         +             + +L   P    
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSWDL-------REGRQLQQHDFTSQIFSLGYCPTGEW 238

Query: 324 VYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENE 383
           +  G     V          +   L    +  L     G    S   D  +  WR     
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298

Query: 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
            I     +  S  V    +  DD+         + +GS DK   ++ V
Sbjct: 299 SI---FQSKESSSVLSCDISVDDK--------YIVTGSGDKKATVYEV 335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.9 bits (135), Expect = 1e-09
 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 1/126 (0%)

Query: 165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224
               K     +S  +  I             ++     ++    R  +            
Sbjct: 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219

Query: 225 SLSMSEDQNLLYSASWDKTFKVWRTSD-YKCLESVIAHDDAVNSIVAGFDGLVFTGSADG 283
           +     +++L+ + S D    ++      K ++++ AH D VN+++      + +  AD 
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADA 279

Query: 284 TVKVWR 289
            +K W 
Sbjct: 280 CIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 3e-09
 Identities = 36/281 (12%), Positives = 80/281 (28%), Gaps = 17/281 (6%)

Query: 110 EGH---IYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSG-- 164
            GH   I +L    + L +GS    I  W +    S  + +S L+ ++  S  + +S   
Sbjct: 10  SGHNKGITALTV--NPLISGSYDGRIMEWSSS---SMHQDHSNLIVSLDNSKAQEYSSIS 64

Query: 165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224
             D          +  S  K           +  +      ++         ++     S
Sbjct: 65  WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL------VFT 278
           ++S+S++   +     +       +      +         + I             V  
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
                 ++    +      +      +  +     A     +  +V  GS D  +  +  
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 339 ELNLSHGGVLRGHKLAILCLV-TAGNLVFSGSADMSICIWR 378
           +  +     L  HK  +  L+    + + S  AD  I  W 
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 5e-09
 Identities = 46/300 (15%), Positives = 91/300 (30%), Gaps = 34/300 (11%)

Query: 144 FKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203
              ++  + A+ ++   + SG  DG+I  W  SS        + +L    D  K     S
Sbjct: 9   ISGHNKGITALTVN--PLISGSYDGRIMEWSSSSMHQDHSNLIVSL----DNSKAQEYSS 62

Query: 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD 263
              +     NG+    F +   ++ + +       + D    + ++     ++SV  +  
Sbjct: 63  ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP 122

Query: 264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAI 323
                ++          A G  +    ++                    + ++ISP    
Sbjct: 123 GSAVSLSQNY------VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 324 VYCG------------SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
           +  G            S +   + W    +  +    +  +          +LV +GS D
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236

Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
            +I I+  K      +  L  H   V  L  E             L S   D  +K W V
Sbjct: 237 TNIFIYSVKRPMK-IIKALNAHKDGVNNLLWETPS---------TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 6e-04
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 347 VLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406
            + GH   I  L    N + SGS D  I  W          SM   HS  +  L   K  
Sbjct: 8   TISGHNKGITAL--TVNPLISGSYDGRIMEWSSS-------SMHQDHSNLIVSLDNSKAQ 58

Query: 407 E 407
           E
Sbjct: 59  E 59

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.6 bits (124), Expect = 4e-08
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251
               +  +        V    +   + H  ++  L+ S D   + SAS DKT K+W  + 
Sbjct: 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 269

Query: 252 YKCLESVIAHDDAVNSI--VAGFDGLVFTGSADGTVKVWRRE 291
            K  +++       +    +      + + SA+G +     E
Sbjct: 270 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 7e-06
 Identities = 33/297 (11%), Positives = 66/297 (22%), Gaps = 32/297 (10%)

Query: 109 EEGHIYSLAAAGD---LLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFS 163
             G    L        + Y    S       +  +   +  +S        S       S
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 164 GHQDGKIRVWKVSSKDASIHKRVG-----------------TLPTFKDFIKCSMKPSNYI 206
           G   G +R+W  +     +   +                       +   +         
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 207 EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN 266
                      +  +++        + +  S              +K             
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195

Query: 267 SIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326
                      TG     V     +    G     S   +    +V  L  SPD   +  
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 327 GSSDGLVNFWERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIW 377
            S+D  +  W    N++   V +        +   L ++     + S SA+  I   
Sbjct: 256 ASADKTIKIW----NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 4/104 (3%)

Query: 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC 357
              F             L  +P    +   +   +       L  +   +   H      
Sbjct: 6   TALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE--IYTEHSHQTTV 63

Query: 358 LVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKC 399
             T+  G    SG    ++ IW   +  HI  + +   SGPVK 
Sbjct: 64  AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 240 WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH 299
                      +   L++V           +     + + SAD T+K+W        T  
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-----TLK 271

Query: 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
                 +        L I      +   S++G +NF   E
Sbjct: 272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.6 bits (124), Expect = 4e-08
 Identities = 23/344 (6%), Positives = 68/344 (19%), Gaps = 47/344 (13%)

Query: 120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEK---IFSGHQDGK-IRVWKV 175
           GDL+   S  +   +      +         ++ +    +       G ++G  + ++  
Sbjct: 15  GDLIAFVSRGQ-AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 73

Query: 176 S-------------------SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216
                                ++                   + KP+     R      +
Sbjct: 74  RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 133

Query: 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLV 276
               ++         ++        +   V+     K   +   +              +
Sbjct: 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193

Query: 277 FTGSADGTVKVW-RRELQGKGTKHFFSQTLLKQECAVTALAISPDAA------IVYCGSS 329
           +  S         R  L            +     +     + P +              
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253

Query: 330 DGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICL 387
                      +      L    L     V                +  +  K  +    
Sbjct: 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---- 309

Query: 388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
             +T     +  L +  D +++             D  +  + +
Sbjct: 310 --VTEVKNNLTDLRLSADRKTV--------MVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 18/190 (9%), Positives = 40/190 (21%), Gaps = 16/190 (8%)

Query: 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC-------LES 257
             ++   +            + +   D   LY  S+                        
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222

Query: 258 VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVTAL 315
           +     + N             G  D      R          +     L+      +  
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 316 AISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMS 373
                AA        G++  ++ +        +   K  +  L  +     V     D  
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVK-----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGK 337

Query: 374 ICIWRRKENE 383
           I  +  ++ E
Sbjct: 338 IYTFPLEKPE 347

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 33/315 (10%), Positives = 79/315 (25%), Gaps = 44/315 (13%)

Query: 109 EEGH---IYSLA--AAGDLLYTGSDSKNIRVW-----KNQREFSGFKSNSGLVKAIVIS- 157
           E+     I  +    +  LL   S   ++ V+         +          +       
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 158 --NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGL 215
             + +I+ G   G+I    +    +               I                  +
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 216 WIKHFDAISSLSMS-----------------EDQNLLYSASWDKTFKVWRTSDYKCLESV 258
                     +++                   + + L     +   + +R    +     
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 259 IAHDDAVNSIVAGF-----DGLVFTGSADGTVKVWRRELQG---------KGTKHFFSQT 304
           I        I                S DG V V   + QG             H  +  
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246

Query: 305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNL 364
                  V ++  SP    +Y   SDG+++ W  +         + ++ +++ +  + N+
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306

Query: 365 VFSGSADMSICIWRR 379
           +   ++D +      
Sbjct: 307 LCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 31/260 (11%), Positives = 69/260 (26%), Gaps = 21/260 (8%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC---LESVIAHDDAVNSIVAGFDG- 274
             D IS + +   ++LL   SWD +  V++         L   + +   +       +  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 275 -LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333
             ++ G+  G +                ++  L              AA           
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 334 --NFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT 391
                      +        K  I  + T  + +  G  +  +  +R    E    ++  
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189

Query: 392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH------ 445
                         D +L  +++      S+D  V +    +Q     S+ +        
Sbjct: 190 SGLKYQIR------DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 446 --PLEGHGVAPNSLPYAPSF 463
                      NS+ ++P  
Sbjct: 244 NLKDTNLAYPVNSIEFSPRH 263

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 17/137 (12%)

Query: 157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216
             E       DG++ V     +    +                     +       N   
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSS-----------------KRFAFRCHRLNLKD 247

Query: 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLV 276
                 ++S+  S     LY+A  D     W     K +++    ++     +A  D ++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 277 FTGSADGTVKVWRRELQ 293
              ++D T K      Q
Sbjct: 308 CLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311
           + ++   A  D ++ I       L+   S DG++ V++ +      K+      L+ +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLRYKHP 58

Query: 312 VTALAISPDA-AIVYCGSSDGLVNFW 336
           +       +    +Y G+  G +   
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKV 84

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
            +       +   +       H +  +  +     N+L S S +  F ++     K + +
Sbjct: 260 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA 318

Query: 258 VI-AHDDAVNSIVAGFDGLVFTGSADGTVKVW 288
            I    D + S+      LV     DG   + 
Sbjct: 319 NILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
           H  ++ +  +  + N + + + DK  +V+ + + K L  +  HD  V ++     G++ +
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
           GS D TV+VW  +                       +    +   +  GS D  ++ W+
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHN----STVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 55/361 (15%), Positives = 118/361 (32%), Gaps = 60/361 (16%)

Query: 110 EGH----IYSLAAAGDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK-IF 162
            GH    I  L    + + TG+D K IRV+   N++       + G V A+  ++   + 
Sbjct: 9   RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 163 SG--------------------------------HQDGKIRVWKVSSKDASIHK-RVGTL 189
           SG                                 +   I+     S+D ++H  ++   
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249
            +  D  +    P  +     +   + +      S  ++S   N++ S S+D T  VW  
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 188

Query: 250 SDYKCLESVIAHDDAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ 308
           +  KCL  +  H D + S +   +     + S D T+++W  E             L+  
Sbjct: 189 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 248

Query: 309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368
                          +   ++DG +  W+             +  AI     + N++ SG
Sbjct: 249 LR--------LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG 300

Query: 369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428
           S +    I+  +  + +  + +   +  +  +  +            ++ +   D    +
Sbjct: 301 S-ENQFNIYNLRSGKLV-HANILKDADQIWSVNFKGK---------TLVAAVEKDGQSFL 349

Query: 429 W 429
            
Sbjct: 350 E 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 347 VLRGHKLAIL-CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
            LRGH  +++ CL    N V +G+ D  I ++     +   L  L+GH G V  L     
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG 64

Query: 406 DESLS 410
              +S
Sbjct: 65  GILVS 69

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 6e-08
 Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 4/105 (3%)

Query: 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247
                    +                    +            D     +   D T +VW
Sbjct: 219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW 278

Query: 248 RTSDYKCLESVIAHDDAVNSIVAGF----DGLVFTGSADGTVKVW 288
             +  KC++        + +   G     +G + + S DGT+  +
Sbjct: 279 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 39/343 (11%), Positives = 88/343 (25%), Gaps = 53/343 (15%)

Query: 109 EEGHIYSLAAAGD---LLYTGSDSKNIRVWKNQ-------REFSGFKSNSGLVKAIVIS- 157
           +      L+       + Y    S  +R   +         +F+G  S+   V  +  S 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSV--VTTVKFSP 73

Query: 158 ---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNG 214
              ++ + SG + GK+ VW  +                               V  +   
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDK------------------------ESNSVEVNVKS 109

Query: 215 LWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF 272
            +      IS +S   +  +  +     D             L  V  H   +N+     
Sbjct: 110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169

Query: 273 DGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332
              + + +      V   +               +                V    SD  
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 229

Query: 333 VNFWERELNLSHGGVLRGHKLAILCLVTA----GNLVFSGSADMSICIWRRKENEHICLS 388
           ++ ++ +       +    +     +            +  AD +I +W    ++  C+ 
Sbjct: 230 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK--CVQ 287

Query: 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
             T     +    V      +       + S SLD ++  + +
Sbjct: 288 KWTLDKQQLGNQQV-----GVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 6e-07
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSIVAGFDGLVF 277
           H  AI++LS S D   L+SA  +     W  S           H   +  I     G +F
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQ 303
           T S D  +KV      G  +    + 
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVAN 96

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 34/300 (11%), Positives = 77/300 (25%), Gaps = 28/300 (9%)

Query: 148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY 205
           +  + A+  S   + +FS   +G I  W +S+            P     +   +K ++ 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTG-----ISNRVFPDVHATMITGIKTTSK 66

Query: 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH---- 261
            ++        +K   A  S   S        +S      V    D              
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 262 ---------DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV 312
                        + +    D          +     +      ++        +     
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM 372
            +   +   A                EL  ++       K+A +        + +GS D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432
           S+ +W   +     + +   H+       +  ++          + S   D ++K W V 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--------TIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 39/296 (13%), Positives = 76/296 (25%), Gaps = 20/296 (6%)

Query: 103 IGSLVRE-EGH---IYSLA--AAGDLLYTGSDSKNIRVW---KNQREFSGFKSNSGLVKA 153
           +GS+ +   GH   I +L+  A G  L++     +I  W              ++ ++  
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 154 I-VISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG-------TLPTFKDFIKCSMKPSNY 205
           I   S   +F+   D  ++V           K V                   ++     
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265
                    L        SS     +     +     +           +  V       
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325
                 F        A    +           +   + +       V  ++ SPD   + 
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 326 CGSSDGLVNFWE-RELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSICIWR 378
            GS D  V  W   + +     +   H ++ +  V       + S   D +I  W 
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV 439
              +  GH+  +  L+   D +         L+S   +  +  W +S      V
Sbjct: 4   IDQVRYGHNKAITALSSSADGK--------TLFSADAEGHINSWDISTGISNRV 49

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 13/126 (10%), Positives = 32/126 (25%), Gaps = 3/126 (2%)

Query: 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV-IAHDDAVNSIVAGFDG--LVFTGSAD 282
            ++      +   ++     V   +     +S  +       + +   D        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 283 GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342
           G +     +          S    +   ++ + AISPD   VY   +          +  
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 343 SHGGVL 348
               V 
Sbjct: 122 PRLEVF 127

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 25/291 (8%), Positives = 56/291 (19%), Gaps = 27/291 (9%)

Query: 57  AFAIAQDG-----SPTHNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEG 111
              +A D         H                 +  +    + G S      S   +E 
Sbjct: 44  TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 103

Query: 112 HIYSLAAAGDLLYTGSDSKNIRVW-----KNQREFSGFKSNSGLVKAIVISNEKIFSGHQ 166
           +           +       + V+        +    F     +       +  ++    
Sbjct: 104 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY--VA 161

Query: 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226
              I    V +      K    LP      K    P                    I+  
Sbjct: 162 GPDIYKMDVKT-----GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR- 215

Query: 227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDGLVFTGSADGTV 285
              +D+    +A     +        K      A   +   + +               +
Sbjct: 216 -FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274

Query: 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW 336
             +         K          +     +A       +Y G +   +  +
Sbjct: 275 AKY-------DLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 31/345 (8%), Positives = 75/345 (21%), Gaps = 53/345 (15%)

Query: 115 SLAAAGDLLYTGSDSKNIRVW--KNQREFSGFKSNSGL-VKAIVIS--NEKIF-SGHQDG 168
           +L A  + +   +   N+ V    +   +              +++  N   +   +  G
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228
            I        D    K            +          +      ++            
Sbjct: 63  DIYGI-----DLDTCKNTFHANLSSVPGEVGRSM-YSFAISPDGKEVYATVNPT------ 110

Query: 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD--DAVNSIVAGFDGLVFTGSADGTV- 285
              +   +        +V+ T+D    + V        V  + A  DG ++    D    
Sbjct: 111 --QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168

Query: 286 ---------------KVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDAAIVYCGSS 329
                             +          +  Q+   +     T      D         
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 330 DGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICL 387
                  + +   +H              +          G  +  +  +  K+ + I  
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIK- 286

Query: 388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432
                      C+A +K  +         LY G     + ++   
Sbjct: 287 --AANLDHTYYCVAFDKKGD--------KLYLGGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 12/188 (6%), Positives = 44/188 (23%), Gaps = 9/188 (4%)

Query: 80  WSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQR 139
                V +   +++   +     I  +  + G         +    G  + ++  +   +
Sbjct: 142 PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201

Query: 140 EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASI------HKRVGTLPTFK 193
                 S    +       +   +           + +            +   T     
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261

Query: 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFD---AISSLSMSEDQNLLYSASWDKTFKVWRTS 250
                     N +     +    IK  +       ++  +  + LY         V+   
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

Query: 251 DYKCLESV 258
             + ++++
Sbjct: 322 TLEKVKNI 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 19/323 (5%), Positives = 63/323 (19%), Gaps = 32/323 (9%)

Query: 121 DLLYTGSDSKNIRVW-----KNQREFSGFKSNSGLVKAIVISNEK---IFSGHQDGKIRV 172
           D +   +    + V         +  +   +        +++        + ++   +  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPT-PMVPMVAPGGRIAYATVNKSESLVK 60

Query: 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232
             + +                   +              +     +    +         
Sbjct: 61  IDLVT------GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114

Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL 292
             +     +   +       + +  +    D       G D  V    A   V+    + 
Sbjct: 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQS 174

Query: 293 QGKG------TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG 346
                         ++Q       A        D       +    +   + E       
Sbjct: 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234

Query: 347 VLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406
            +R   +             +  A   +  +  ++N  I              + V  D 
Sbjct: 235 EVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK---RVPLPHSYYSVNVSTDG 291

Query: 407 ESLSREKRWILYSGSLDKSVKMW 429
                     ++ G     +  +
Sbjct: 292 S--------TVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 7/120 (5%), Positives = 31/120 (25%), Gaps = 8/120 (6%)

Query: 160 KIFSGHQDGKIRVWKVSSK--------DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRH 211
                     +    + +            +      +   K     +       ++ ++
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 212 RNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG 271
            +   +    +  S+++S D + ++          +     +    V    +A  S+ + 
Sbjct: 271 ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 29/224 (12%), Positives = 53/224 (23%), Gaps = 14/224 (6%)

Query: 68  HNDSSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGS 127
              +   +  SP     V                            +     G L     
Sbjct: 116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF 175

Query: 128 DSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187
            ++      +   F           A      ++      GKI    +SS DA     V 
Sbjct: 176 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE 235

Query: 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247
            L           +P  + +V  HR    I            + ++     +  +   V 
Sbjct: 236 ALTE--AERADGWRPGGWQQVAYHRALDRIYLL--------VDQRDEWRHKTASRFVVVL 285

Query: 248 RTSDYKCLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVW 288
                + L +       ++SI    D    L    + D T+ + 
Sbjct: 286 DAKTGERL-AKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 38/308 (12%), Positives = 82/308 (26%), Gaps = 24/308 (7%)

Query: 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF---DAISSLSMS 229
           WKV  K     K+        +    +++ +  I +    +   +K      A+    MS
Sbjct: 11  WKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMS 70

Query: 230 EDQNLLYSASWDKTFKVWRTSDYKC-----LESVIAHDDAVNSIVAGFDG--LVFTGSAD 282
                L     D    +      +      ++  I      +S   G++    +      
Sbjct: 71  ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP 130

Query: 283 GTVKVWRRELQG-KGTKHFFSQTLLKQECA----VTALAISPDAAIVYCGSSDG---LVN 334
               +   E    K        T+  Q       V A+  S +         +    L+ 
Sbjct: 131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190

Query: 335 FWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI-WRRKENEHICLSMLTGH 393
            ++   NL+   +     LA     ++     + + + +       K+     L  +   
Sbjct: 191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 250

Query: 394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVA 453
             P +                    S   D S+ +     +  P  +  +   L+G G  
Sbjct: 251 PHPGRGANFVHPK-----YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 305

Query: 454 PNSLPYAP 461
              +   P
Sbjct: 306 SLFIKTHP 313

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 18/173 (10%), Positives = 43/173 (24%), Gaps = 15/173 (8%)

Query: 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD---AISSLSMS 229
           WKV         +       ++    +++ +  I +            D   A+    +S
Sbjct: 11  WKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLS 70

Query: 230 EDQNLLYSASWDKTFKVWRTSDYKC-----LESVIAHDDAVNSIVAGFDG--LVFTGSAD 282
                L+    D    +      +      ++          S + G++    +      
Sbjct: 71  ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP 130

Query: 283 GTVKVWRREL-QGKGTKHFFSQTLLKQECAV----TALAISPDAAIVYCGSSD 330
               +   E  + K  +     T  +QE        A+  S           +
Sbjct: 131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	474
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.04
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.03
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.0
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.85
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.67
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.6
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.4
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.29
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.81
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.68
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.63
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.63
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.37
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.35
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.12
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.98
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.92
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.87
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.84
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.82
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.63
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.61
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.55
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.46
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.14
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.07
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.45
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.11
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.7
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.58
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.35
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.23
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	89.94
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.19
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.3
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.79
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.25
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	84.12

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=305.46  Aligned_cols=279  Identities=18%  Similarity=0.290  Sum_probs=234.5

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc-------ccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE-------FSGFKSNSGLVKAIVIS--NEKIFSGHQDGK  169 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~-------~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~  169 (474)
                      ..+.++ +|...|.|++++  |++|++|+ ||.|+|||+...       ......|.+.|.+++|+  +++|++|+.||.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            455555 899999999987  88999998 899999996421       12345789999999997  679999999999


Q ss_pred             EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      |++||+.........                              .+..|...|.+++|+|++.++++++.|+.|++||+
T Consensus       121 i~iwd~~~~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_         121 LSIWDLAAPTPRIKA------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             EEEEECCCC--EEEE------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccccccccc------------------------------ccccccccccccccccccccccccccccccccccc
Confidence            999999865443221                              23348889999999999999999999999999999


Q ss_pred             CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      .++++......|...|.+++|++++ .+++++.|+.|++||++....       .....+...|.+++|+|++++|++++
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~i~~l~~~~~~~~l~~~~  243 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-------LQQHDFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-------EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccee-------ecccccccceEEEEEcccccccceec
Confidence            9999999999999999999999998 999999999999999975432       23345788999999999999999999


Q ss_pred             CCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          329 SDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      .|+.+++||++.....  ....|...+.  ++++++++|++|+.||.|++||+.+++.  +.. ..|...|++++|+|++
T Consensus       244 ~d~~i~i~d~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~--~~~-~~~~~~v~~~~~s~d~  318 (337)
T d1gxra_         244 ESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQ-SKESSSVLSCDISVDD  318 (337)
T ss_dssp             TTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEE-EECSSCEEEEEECTTS
T ss_pred             cccccccccccccccc--cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE--EEE-ccCCCCEEEEEEeCCC
Confidence            9999999999887654  3445666564  5567899999999999999999998874  333 3478899999999999


Q ss_pred             ccccccceEEEEEecCCCcEEEEEc
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      +        +|++|+.||+|+|||+
T Consensus       319 ~--------~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         319 K--------YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             C--------EEEEEETTSCEEEEEE
T ss_pred             C--------EEEEEeCCCeEEEEEE
Confidence            8        9999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-38  Score=291.72  Aligned_cols=279  Identities=23%  Similarity=0.399  Sum_probs=244.0

Q ss_pred             eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC
Q 047728          103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~  176 (474)
                      ..+|.+|++.|++++++  +++|+||+.||+|+|||.  .+.+..+.+|...|.+++++  +.+++++..++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            35789999999999986  889999999999999995  46777889999999999998  6689999999999999987


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE  256 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  256 (474)
                      ......                                .+.+|...+.++.++++++.+++++.|+.+++||+++++.+.
T Consensus        90 ~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  137 (317)
T d1vyhc1          90 GFECIR--------------------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK  137 (317)
T ss_dssp             SSCEEE--------------------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccccc--------------------------------ccccccccceeeeccCCCceEEeeccCcceeEeecccceeee
Confidence            765432                                223488899999999999999999999999999999999999


Q ss_pred             eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC---------------
Q 047728          257 SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD---------------  320 (474)
Q Consensus       257 ~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------------  320 (474)
                      .+..|...+.++++++++ .|++++.|+.|++|++....      ....+..+...+.+++++|+               
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  211 (317)
T d1vyhc1         138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETK  211 (317)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             EEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce------eeEEEecCCCCceEEEEeeccccceeeccccceee
Confidence            999999999999999998 99999999999999998654      24556678888999988875               


Q ss_pred             -----CCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC
Q 047728          321 -----AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH  393 (474)
Q Consensus       321 -----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h  393 (474)
                           +.++++++.|+.|++||++++... ..+.+|...+.  ++++++++|++|+.||.|++||+.+++  ++..+.+|
T Consensus       212 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h  288 (317)
T d1vyhc1         212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTLNAH  288 (317)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC--CCEEEECC
T ss_pred             eeccCCceeEeccCCCEEEEEECCCCcEE-EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc--EEEEEcCC
Confidence                 347899999999999999987655 45567777775  456689999999999999999999887  46788999


Q ss_pred             ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                      .++|++++|+|+++        +|++|+.||+|+|||
T Consensus       289 ~~~V~~~~~s~~~~--------~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         289 EHFVTSLDFHKTAP--------YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECSSSS--------CEEEEETTSEEEEEC
T ss_pred             CCCEEEEEEcCCCC--------EEEEEeCCCeEEEeC
Confidence            99999999999998        899999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-37  Score=294.08  Aligned_cols=287  Identities=23%  Similarity=0.365  Sum_probs=223.1

Q ss_pred             eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc--ccc------------------ccccCccCEEEEEec--CC
Q 047728          104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR--EFS------------------GFKSNSGLVKAIVIS--NE  159 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~--~~~------------------~~~~h~~~V~~i~~~--~~  159 (474)
                      ....+|++.|+|++|+  |++||+|+ |++|+|||...  .+.                  ....|...|.+++|+  ++
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            3445799999999987  78999997 89999998542  211                  223577889999998  67


Q ss_pred             EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728          160 KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS  239 (474)
Q Consensus       160 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  239 (474)
                      +|++|+.||.|++|+...++...                                .+.+|...|.++++++++..+++++
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~~~~~~  182 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVM--------------------------------ILQGHEQDIYSLDYFPSGDKLVSGS  182 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEE--------------------------------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeccccccccccccccccccc--------------------------------ccccccccccccccccccccccccc
Confidence            99999999999999998775432                                2345999999999999999999999


Q ss_pred             CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee-eeeeeeecccccEEEEEE
Q 047728          240 WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH-FFSQTLLKQECAVTALAI  317 (474)
Q Consensus       240 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~  317 (474)
                      .++.|++||.++.........+...+....+.+++ +|++++.|+.|++||.+........ ........|...|.+++|
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             cceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            99999999999988887776655555444444566 8999999999999998865432221 112334567889999999


Q ss_pred             cCCCCEEEEEcCCCcEEEeecCcccccc-----------eeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728          318 SPDAAIVYCGSSDGLVNFWERELNLSHG-----------GVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEH  384 (474)
Q Consensus       318 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~-----------~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~  384 (474)
                      +|++++|++++.|+.|++||++......           .....|...+.  ++++++++|++|+.||.|++||+++++ 
T Consensus       263 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-  341 (388)
T d1erja_         263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-  341 (388)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-
T ss_pred             CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-
Confidence            9999999999999999999987653321           22334555554  455689999999999999999999988 


Q ss_pred             EEEEeecCCccceEEEEEe------eCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          385 ICLSMLTGHSGPVKCLAVE------KDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       385 ~~~~~~~~h~~~v~~l~~~------~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                       ++..+.+|.+.|+++++.      |++.        +|+||+.||+|+||++++
T Consensus       342 -~~~~l~~H~~~V~~~~~~~~~~~spd~~--------~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         342 -PLLMLQGHRNSVISVAVANGSSLGPEYN--------VFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             -EEEEEECCSSCEEEEEECSSCTTCTTCE--------EEEEEETTSEEEEEEEEE
T ss_pred             -EEEEEeCCCCCEEEEEEecCcccCCCCC--------EEEEEeCCCEEEEEeeee
Confidence             567899999999999864      5666        899999999999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-37  Score=288.72  Aligned_cols=309  Identities=18%  Similarity=0.240  Sum_probs=237.7

Q ss_pred             eeeeeeecCc-EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCC
Q 047728          103 IGSLVREEGH-IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       103 ~~~l~~h~~~-i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      ..+|.+|++. |.|++|++++||||+.||+|+|||..  +.+..+.+|.+.|.+++|+ +++|++|+.||+|++|++...
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc
Confidence            4578999887 58999999999999999999999954  6778899999999999998 679999999999999999887


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      .........                              .+...+....+.+++..+++++.|+.|++||+.+.......
T Consensus        85 ~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~  134 (355)
T d1nexb2          85 CCTHVFEGH------------------------------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH  134 (355)
T ss_dssp             EEEEEECCC------------------------------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred             ccccccccc------------------------------cccccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence            654322211                              13334556777889999999999999999999876543221


Q ss_pred             -----------------------eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728          259 -----------------------IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA  314 (474)
Q Consensus       259 -----------------------~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  314 (474)
                                             ..|...+..  +.+++ .++++..|+.|++||++...      .......+...+.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~~  206 (355)
T d1nexb2         135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMK------CLYILSGHTDRIYS  206 (355)
T ss_dssp             ----CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEE
T ss_pred             cccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeeeccccc------ceeeeecccccccc
Confidence                                   123333333  33344 89999999999999987543      24556677888999


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728          315 LAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS  394 (474)
Q Consensus       315 l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~  394 (474)
                      +.+++++.++++++.|+.|++||.+++... ..+.+|...+.++.+++++|++|+.||.|++||+++...    .+..|.
T Consensus       207 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~  281 (355)
T d1nexb2         207 TIYDHERKRCISASMDTTIRIWDLENGELM-YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR----KFSYHH  281 (355)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTCCEE-EEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCE----EEEEEC
T ss_pred             ccccccceeeecccccceEEeeeccccccc-cccccccccccccccccceeeeeecccccccccccccce----eccccc
Confidence            999999999999999999999999987655 566789999999999999999999999999999988763    334566


Q ss_pred             cceEEEE-EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC-----CCCcCCc
Q 047728          395 GPVKCLA-VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP-----SFSSQGR  468 (474)
Q Consensus       395 ~~v~~l~-~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-----~~s~Dg~  468 (474)
                      ..+.++. +++++.        +|++| .|+.|+|||+++++..      ...+.+|...|.+++|+|     +.+.||+
T Consensus       282 ~~~~~~~~~~~~~~--------~l~~g-~d~~i~vwd~~tg~~~------~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~  346 (355)
T d1nexb2         282 TNLSAITTFYVSDN--------ILVSG-SENQFNIYNLRSGKLV------HANILKDADQIWSVNFKGKTLVAAVEKDGQ  346 (355)
T ss_dssp             TTCCCCCEEEECSS--------EEEEE-ETTEEEEEETTTCCBC------CSCTTTTCSEEEEEEEETTEEEEEEESSSC
T ss_pred             CCceEEEEEcCCCC--------EEEEE-eCCEEEEEECCCCCEE------EEEecCCCCCEEEEEEcCCeEEEEEECCCc
Confidence            6666654 566665        66655 5899999999987432      124567888999997766     2355655


Q ss_pred             e
Q 047728          469 I  469 (474)
Q Consensus       469 ~  469 (474)
                      +
T Consensus       347 ~  347 (355)
T d1nexb2         347 S  347 (355)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.3e-37  Score=281.62  Aligned_cols=273  Identities=15%  Similarity=0.159  Sum_probs=221.8

Q ss_pred             EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728          113 IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGT  188 (474)
Q Consensus       113 i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  188 (474)
                      +.+++++|+.|+.+. ++.|.+|+..  .....+.+|...|++++|+  +++|++|+.||+|++||+.........    
T Consensus        22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~----   96 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT----   96 (311)
T ss_dssp             CCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE----
T ss_pred             EEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc----
Confidence            345556788998886 5679999865  4566788999999999997  779999999999999999987654322    


Q ss_pred             cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeeeeeecCccee
Q 047728          189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLESVIAHDDAVN  266 (474)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~  266 (474)
                                                .+..|..+|.+++|+|++++|++++.  +..+++|++++++....+.+|...|.
T Consensus        97 --------------------------~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          97 --------------------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN  150 (311)
T ss_dssp             --------------------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred             --------------------------ccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                      23348999999999999999999986  45699999999999999999999999


Q ss_pred             EEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728          267 SIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH  344 (474)
Q Consensus       267 ~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  344 (474)
                      +++|+|++  .+++|+.|+.|++||++...      .......|...|++++|+|++++|++++.|+.|++||...+...
T Consensus       151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFK------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT  224 (311)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccccceeeecccccccccccccccccc------cccccccccccccccccCcccccccccccccccccccccccccc
Confidence            99999988  58899999999999988543      35566778999999999999999999999999999999876443


Q ss_pred             ce------eeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc-ceEEEEEeeCCccccccceE
Q 047728          345 GG------VLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG-PVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       345 ~~------~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~  415 (474)
                      ..      ...+|...|.+  +++++++|++|+.||.|+|||+++++  ++..+..|.. ....+.+.+++.        
T Consensus       225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~--~~~~l~~~~~~~~~~~~~~~~~~--------  294 (311)
T d1nr0a1         225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK--VEKTIPVGTRIEDQQLGIIWTKQ--------  294 (311)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSGGGCEEEEEECSS--------
T ss_pred             ccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc--EEEEEECCCCccceEEEEEecCC--------
Confidence            22      22356666655  45679999999999999999999887  4566665543 233344455555        


Q ss_pred             EEEEecCCCcEEEEEcc
Q 047728          416 ILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~~~  432 (474)
                      .|++++.||.|++||.+
T Consensus       295 ~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         295 ALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEETTCCEEEEETT
T ss_pred             EEEEEECCCEEEEEeCC
Confidence            78999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.5e-36  Score=278.17  Aligned_cols=286  Identities=19%  Similarity=0.323  Sum_probs=237.7

Q ss_pred             ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728          100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW  173 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw  173 (474)
                      ....++|.+|++.|++++|+  +++||||+.||+|+|||..  +.+..+..|...|.+++|+  +.++++|+.|+.+++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            35667899999999999986  8899999999999999954  5677788999999999998  6799999999999999


Q ss_pred             ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728          174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK  253 (474)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  253 (474)
                      +...........                            ..+.+|.......... ....++....|.....++.....
T Consensus       125 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  175 (340)
T d1tbga_         125 NLKTREGNVRVS----------------------------RELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             ESSSSCSCCCEE----------------------------EEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTE
T ss_pred             cccccccccccc----------------------------eecccccccccccccc-ccccccccccccccccccccccc
Confidence            987765432111                            1223366656555544 45678888899999999998888


Q ss_pred             eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728          254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL  332 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  332 (474)
                      .......+...+....+.+.+ .+++++.|+.|++||++...      ....+..|...|++++|+|++++|++++.|+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccceeEeeeccccccceeEEeecCceEEEEECCCCc------EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe
Confidence            888888888899999998888 89999999999999987543      35566789999999999999999999999999


Q ss_pred             EEEeecCcccccceee-eecce--eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728          333 VNFWERELNLSHGGVL-RGHKL--AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL  409 (474)
Q Consensus       333 i~v~d~~~~~~~~~~~-~~~~~--~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  409 (474)
                      |++||++......... ..+..  ..+++++++++|++|+.||.|++||+.+++  ++..+.+|.++|++++|+|++.  
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~H~~~V~~l~~s~d~~--  325 (340)
T d1tbga_         250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGM--  325 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS--
T ss_pred             EEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCC--
Confidence            9999998775543321 23333  345667789999999999999999999887  5778999999999999999998  


Q ss_pred             cccceEEEEEecCCCcEEEEE
Q 047728          410 SREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       410 ~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                            +|++|+.||.|+|||
T Consensus       326 ------~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 ------AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------CEEEEETTSCEEEEC
T ss_pred             ------EEEEEccCCEEEEeC
Confidence                  899999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=284.10  Aligned_cols=270  Identities=17%  Similarity=0.237  Sum_probs=222.2

Q ss_pred             cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      .|...|.+++|+  +++|++|+ ||.|+|||+...........                           ....+|.+.|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~---------------------------~~~~~h~~~I  100 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ---------------------------LDCLNRDNYI  100 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE---------------------------EECSCTTSBE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE---------------------------eeecCCCCcE
Confidence            699999999998  66899987 89999999987654321111                           1123489999


Q ss_pred             eEEEecCCCCEEEEEECCCcEEEEEcCC--cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          224 SSLSMSEDQNLLYSASWDKTFKVWRTSD--YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .+++|+|++++|++|+.|+.|++||+..  .+....+..|...+.+++++|++ .+++++.|+.|++||++...      
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~------  174 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT------  174 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred             EEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------
Confidence            9999999999999999999999999874  45566778899999999999998 89999999999999987543      


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWR  378 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd  378 (474)
                      .......|...|.+++|++++..+++++.|+.|++||++++......  .|...+.+  +++++++|++|+.|+.|++||
T Consensus       175 ~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d  252 (337)
T d1gxra_         175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeccc--ccccceEEEEEcccccccceecccccccccc
Confidence            34566678899999999999999999999999999999887655333  45555544  556899999999999999999


Q ss_pred             CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728          379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP  458 (474)
Q Consensus       379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  458 (474)
                      ++..+.   .....|...|++++|+|+++        +|++++.||.|++||+.+++..       .. ..|...|.++ 
T Consensus       253 ~~~~~~---~~~~~~~~~i~~v~~s~~g~--------~l~s~s~Dg~i~iwd~~~~~~~-------~~-~~~~~~v~~~-  312 (337)
T d1gxra_         253 VNKPDK---YQLHLHESCVLSLKFAYCGK--------WFVSTGKDNLLNAWRTPYGASI-------FQ-SKESSSVLSC-  312 (337)
T ss_dssp             TTSSCE---EEECCCSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTCCEE-------EE-EECSSCEEEE-
T ss_pred             cccccc---ccccccccccceEEECCCCC--------EEEEEeCCCeEEEEECCCCCEE-------EE-ccCCCCEEEE-
Confidence            998873   35678999999999999999        9999999999999999887432       22 3467788888 


Q ss_pred             cCCCCCcCCceeeccC
Q 047728          459 YAPSFSSQGRICQKRS  474 (474)
Q Consensus       459 ~~p~~s~Dg~~l~~~s  474 (474)
                         +|+|||++|+++|
T Consensus       313 ---~~s~d~~~l~t~s  325 (337)
T d1gxra_         313 ---DISVDDKYIVTGS  325 (337)
T ss_dssp             ---EECTTSCEEEEEE
T ss_pred             ---EEeCCCCEEEEEe
Confidence               6778999888753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=276.01  Aligned_cols=313  Identities=21%  Similarity=0.331  Sum_probs=234.9

Q ss_pred             ceeeeeeeeecCcE-EEEEEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecC
Q 047728          100 NVLIGSLVREEGHI-YSLAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVS  176 (474)
Q Consensus       100 ~~~~~~l~~h~~~i-~~~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~  176 (474)
                      .+..+.|.+|++.| .|++++|++||||+.||+|+|||.  .+.+..+.+|.+.|.+++|++++|++|+.|+.+++|+..
T Consensus         6 ~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             CCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccc
Confidence            34567899999986 578999999999999999999995  467788999999999999999999999999999999998


Q ss_pred             CCCcceeeeecccCccc-----eeeeeecCCCCeEEEeeeccc--eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728          177 SKDASIHKRVGTLPTFK-----DFIKCSMKPSNYIEVRRHRNG--LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT  249 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~  249 (474)
                      .................     ..... ......+.+......  .............+.+....+++++.|+.|++||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVS-GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEE-EETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             cccceecccccceeEeeeecccccccc-cccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            76544322211110000     00000 001111122111111  11111122223334456678999999999999999


Q ss_pred             CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728          250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS  328 (474)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  328 (474)
                      ...+.+..+.+|...+..+.+  ++ .+++++.||.|++||++...      .......|...+.++++++  ++|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~------~~~~~~~~~~~v~~~~~~~--~~l~s~s  234 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELKD--NILVSGN  234 (342)
T ss_dssp             GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEET--TEEEEEE
T ss_pred             ccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccce------eeeEecccccceeEEecCC--CEEEEEc
Confidence            999999999988887776665  44 89999999999999998654      3566778888898888764  6999999


Q ss_pred             CCCcEEEeecCccccccee--eeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee-----cCCccceEEEE
Q 047728          329 SDGLVNFWERELNLSHGGV--LRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML-----TGHSGPVKCLA  401 (474)
Q Consensus       329 ~dg~i~v~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~  401 (474)
                      .|+.|++||+.........  ...|...+.++.++++++++|+.||.|++||+++++.+  ..+     .+|.+.|++++
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i--~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI--RNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE--EEEEECTTGGGTCEEEEEE
T ss_pred             CCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEE--EEEecccCCCCCCCEEEEE
Confidence            9999999999876544332  23466788999999999999999999999999998743  333     36788999999


Q ss_pred             EeeCCccccccceEEEEEecCCCc----EEEEEccC
Q 047728          402 VEKDDESLSREKRWILYSGSLDKS----VKMWRVSE  433 (474)
Q Consensus       402 ~~~~~~~~~~~~~~~l~s~s~Dg~----i~vw~~~~  433 (474)
                      |+|++.        +|++|+.||+    |++||+..
T Consensus       313 ~s~~~~--------~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         313 ASNTKL--------VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSEE--------EEEEECSSSSSCCEEEEEECCC
T ss_pred             ECCCCC--------EEEEEeCCCCCeeEEEEEeCCC
Confidence            999998        9999999986    99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-35  Score=271.08  Aligned_cols=284  Identities=16%  Similarity=0.230  Sum_probs=220.0

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--cccccc-ccCccCEEEEEec-CCEEEEEeCCCeEEEEe
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGF-KSNSGLVKAIVIS-NEKIFSGHQDGKIRVWK  174 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~-~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd  174 (474)
                      .+.+.+.||++.|++++++  +++|++|+.||+|++||..  +....+ ..|...|.+++|+ +..+++++.|+.+++|+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEec
Confidence            4678899999999999987  7899999999999999964  444555 4789999999998 44788889999999999


Q ss_pred             cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728          175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  254 (474)
                      ..........                             .....+...+.+++|++++.++++++ ++.+++|+...  .
T Consensus        83 ~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~  130 (299)
T d1nr0a2          83 AGGSGVDSSK-----------------------------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--L  130 (299)
T ss_dssp             SSSSSSCTTS-----------------------------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--E
T ss_pred             cCCccccccc-----------------------------cccccccccccccccccccccccccc-ccccccccccc--c
Confidence            8765432111                             12234778899999999998777665 57899998543  2


Q ss_pred             eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      ...  .....+.+++++|++ .+++|+.||.|++||++....     .......|...|++++|+|++++|++++.|+.|
T Consensus       131 ~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  203 (299)
T d1nr0a2         131 TEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-----SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV  203 (299)
T ss_dssp             EEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-----EEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccc--ccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccc
Confidence            222  234567889999998 899999999999999975432     223445678899999999999999999999999


Q ss_pred             EEeecCcccccc--eeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-ccceEEEEEeeCCcc
Q 047728          334 NFWERELNLSHG--GVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-SGPVKCLAVEKDDES  408 (474)
Q Consensus       334 ~v~d~~~~~~~~--~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~  408 (474)
                      ++||+.++....  ..+.+|...+.+  +++++++|++|+.||.|++||+++...........| ...|.++.| +++. 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-  281 (299)
T d1nr0a2         204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNET-  281 (299)
T ss_dssp             EEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETT-
T ss_pred             ccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCC-
Confidence            999998764432  334567777755  456899999999999999999987654333444444 456666655 4555 


Q ss_pred             ccccceEEEEEecCCCcEEEEEcc
Q 047728          409 LSREKRWILYSGSLDKSVKMWRVS  432 (474)
Q Consensus       409 ~~~~~~~~l~s~s~Dg~i~vw~~~  432 (474)
                             +|++++.|++|++||+.
T Consensus       282 -------~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         282 -------TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -------EEEEEETTSCEEEEECC
T ss_pred             -------EEEEEeCCCEEEEEecc
Confidence                   79999999999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-36  Score=274.97  Aligned_cols=276  Identities=23%  Similarity=0.393  Sum_probs=238.0

Q ss_pred             ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728          139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW  216 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (474)
                      .+...+++|.+.|++|+|+  +++|+||+.||+|+|||+.+++...                                .+
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~--------------------------------~~   55 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------------------------TL   55 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------------------------EE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE--------------------------------EE
Confidence            3456789999999999998  6799999999999999999876542                                23


Q ss_pred             eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728          217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      .+|...|.+++|+|++.+++++..++.+.+|+....+....+..|...+.++.+++++ .+++++.|+.+++||++... 
T Consensus        56 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  134 (317)
T d1vyhc1          56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-  134 (317)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-
T ss_pred             eCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce-
Confidence            4599999999999999999999999999999999999988899999999999999998 89999999999999998654 


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe---------------
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT---------------  360 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---------------  360 (474)
                           ....+..|...+.+++|++++.+|++++.|+.|++|+....... ..+..|...+.++.+               
T Consensus       135 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  208 (317)
T d1vyhc1         135 -----CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGS  208 (317)
T ss_dssp             -----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             -----eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee-EEEecCCCCceEEEEeeccccceeeccccc
Confidence                 35566788899999999999999999999999999999877554 334455555544432               


Q ss_pred             -------cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          361 -------AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       361 -------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                             .+.++++++.|+.|++||+.+++  ++..+.+|...|.+++|+|++.        +|++|+.||.|+|||+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~--------~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGK--------FILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS--------CEEEEETTTEEEEECCTT
T ss_pred             eeeeeccCCceeEeccCCCEEEEEECCCCc--EEEEEeCCCCCEEEEEECCCCC--------EEEEEECCCeEEEEECCC
Confidence                   35689999999999999999887  5678889999999999999998        899999999999999988


Q ss_pred             CCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          434 QAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      +       .....+.+|...|+++    +|+|||++|+++|
T Consensus       279 ~-------~~~~~~~~h~~~V~~~----~~s~~~~~l~s~s  308 (317)
T d1vyhc1         279 K-------RCMKTLNAHEHFVTSL----DFHKTAPYVVTGS  308 (317)
T ss_dssp             S-------CCCEEEECCSSCEEEE----EECSSSSCEEEEE
T ss_pred             C-------cEEEEEcCCCCCEEEE----EEcCCCCEEEEEe
Confidence            7       4556788899999999    6678898888764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-36  Score=283.79  Aligned_cols=312  Identities=23%  Similarity=0.331  Sum_probs=235.0

Q ss_pred             eeCCCcEEEEeCC--c----cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          126 GSDSKNIRVWKNQ--R----EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       126 gs~dg~v~vwd~~--~----~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      +..++.+.+|+..  +    .+....+|.+.|++++|+  +++|++|+ |++|+|||+.+++............      
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~------  106 (388)
T d1erja_          34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN------  106 (388)
T ss_dssp             EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred             cCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc------
Confidence            4456667788733  1    122334699999999998  56888876 8999999999887654332111000      


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV  276 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l  276 (474)
                              .............|...|++++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.+++++ .+
T Consensus       107 --------~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  178 (388)
T d1erja_         107 --------KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL  178 (388)
T ss_dssp             --------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             --------ccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccc
Confidence                    000111112234588899999999999999999999999999999999999999999999999999998 89


Q ss_pred             EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccccccee------ee
Q 047728          277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGV------LR  349 (474)
Q Consensus       277 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~~  349 (474)
                      ++++.++.+++||.+....      .... .+.....++.+.+ ++++|++++.|+.|++||.++.......      ..
T Consensus       179 ~~~~~~~~i~~~d~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  251 (388)
T d1erja_         179 VSGSGDRTVRIWDLRTGQC------SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT  251 (388)
T ss_dssp             EEEETTSEEEEEETTTTEE------EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------C
T ss_pred             cccccceeeeeeecccccc------cccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccccc
Confidence            9999999999999875432      2222 3334455555555 8899999999999999999877544332      23


Q ss_pred             ecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCce----------EEEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728          350 GHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEH----------ICLSMLTGHSGPVKCLAVEKDDESLSREKRWIL  417 (474)
Q Consensus       350 ~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l  417 (474)
                      +|...+.+  +++++++|++|+.||.|++||+...+.          .+......|...|++++|+|+++        +|
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l  323 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--------YI  323 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC--------EE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC--------EE
Confidence            56666655  556799999999999999999976532          12445667899999999999998        99


Q ss_pred             EEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC--CCCcCCceeeccC
Q 047728          418 YSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP--SFSSQGRICQKRS  474 (474)
Q Consensus       418 ~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~s~Dg~~l~~~s  474 (474)
                      ++|+.||.|++||+.++       .+...+.+|...|.++++.+  +|+|||++|+++|
T Consensus       324 ~sg~~dg~i~vwd~~~~-------~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         324 LSGSKDRGVLFWDKKSG-------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             EEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             EEEeCCCEEEEEECCCC-------cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence            99999999999999887       56677889999999998865  6899999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-35  Score=280.68  Aligned_cols=288  Identities=13%  Similarity=0.154  Sum_probs=221.7

Q ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCC--c--cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcce
Q 047728          111 GHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--R--EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASI  182 (474)
Q Consensus       111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~  182 (474)
                      .+|+|++|+  |++||+|+.||.|+|||..  +  .+..+++|.+.|.+++|+  +++|++|+.|++|+|||+..+....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            568888876  8899999999999999853  2  456688999999999997  7799999999999999998764332


Q ss_pred             eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee----eee
Q 047728          183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL----ESV  258 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~  258 (474)
                      ..                              .+.+|...|.+++|+|+++.|++++.|++|++|++......    ...
T Consensus        88 ~~------------------------------~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          88 TL------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             EE------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             cc------------------------------ccccccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence            21                              22348899999999999999999999999999998765533    233


Q ss_pred             eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee------------eeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          259 IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK------------HFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       259 ~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                      ..|...|.+++|+|++ +|++|+.|+.|++||.........            .........|...|.+++|+|++++|+
T Consensus       138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence            4578899999999999 899999999999999864332110            113344567888999999999999999


Q ss_pred             EEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEE----------------
Q 047728          326 CGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICL----------------  387 (474)
Q Consensus       326 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~----------------  387 (474)
                      +++.|+.|++||+..+... ..+..|..++  +++++++++|++|. |+.+++|..........                
T Consensus       218 s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
T d1k8kc_         218 WVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  295 (371)
T ss_dssp             EEETTTEEEEEEGGGTTEE-EEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             ccccCCcceEEeeecccce-eeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence            9999999999999887655 4456677666  45567787777655 77777765433211100                


Q ss_pred             -----------------------EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          388 -----------------------SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       388 -----------------------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                                             .....|.+.|+++++.+.+..    ....|+|++.||.|+||++++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~----~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA----KCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT----SCSEEEEEETTSEEEEEEHHHH
T ss_pred             cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCc----ceEEEEEEcCCCeEEEEeCCcC
Confidence                                   001248889999999986541    1115899999999999999764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-34  Score=266.76  Aligned_cols=251  Identities=18%  Similarity=0.161  Sum_probs=206.3

Q ss_pred             CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc----ccccccCccCEEEEEec--CCEEEEEeC--C
Q 047728           98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE----FSGFKSNSGLVKAIVIS--NEKIFSGHQ--D  167 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~--~~~l~s~~~--d  167 (474)
                      ........+.+|++.|.+++++  |++||+|+.||+|+|||....    ...+..|...|.+++|+  +++|++++.  +
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~  125 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  125 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc
Confidence            3445666788999999999875  889999999999999996532    24577899999999998  568888875  4


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE-EEEEECCCcEEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL-LYSASWDKTFKV  246 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~i  246 (474)
                      ..++||++++++...                                .+.+|...|++++|+|++++ |++|+.|+.|++
T Consensus       126 ~~~~v~~~~~~~~~~--------------------------------~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1         126 RFGHVFLFDTGTSNG--------------------------------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             CSEEEEETTTCCBCB--------------------------------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             ccccccccccccccc--------------------------------cccccccccccccccccceeeeccccccccccc
Confidence            569999998875432                                23459999999999998875 788999999999


Q ss_pred             EEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee-eeeeeeecccccEEEEEEcCCCCEE
Q 047728          247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH-FFSQTLLKQECAVTALAISPDAAIV  324 (474)
Q Consensus       247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l  324 (474)
                      ||+++++....+..|...|.++.++|++ .+++++.|+.|++||++........ .......+|...|++++|+|++++|
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence            9999999999999999999999999999 8999999999999998765432111 1112345688899999999999999


Q ss_pred             EEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          325 YCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       325 ~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      ++|+.||.|++||+++++....+...  ....+.++.+++++|++++.||.|++||.+
T Consensus       254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999999999988765433322  234567888999999999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-34  Score=257.73  Aligned_cols=276  Identities=23%  Similarity=0.398  Sum_probs=223.2

Q ss_pred             eeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCC
Q 047728          101 VLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      +.+....+|...|+|++|++++||||+.||+|+|||.  .+.+..+.+|.+.|.+++|++++|++|+.|+.|++|++..+
T Consensus         6 ~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred             EEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccc
Confidence            3445566788899999999999999999999999995  46778899999999999999999999999999999999887


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce---e
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC---L  255 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~  255 (474)
                      .......                                  ........+.+....++++..++.+.+||..+...   .
T Consensus        86 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (293)
T d1p22a2          86 EMLNTLI----------------------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR  131 (293)
T ss_dssp             CEEEEEC----------------------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred             ccccccc----------------------------------ccccccccccccccceeecccccceeEeecccccccccc
Confidence            6543221                                  11122334455667899999999999999987654   3


Q ss_pred             eeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728          256 ESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF  335 (474)
Q Consensus       256 ~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v  335 (474)
                      ..+..|...+..+.+.+. .+++++.|+.|++||++...      ....+..+...+..+.++  +..+++++.|+.|++
T Consensus       132 ~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i  202 (293)
T d1p22a2         132 RVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWNTSTCE------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRL  202 (293)
T ss_dssp             EEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             ccccccccccccceeccc-ccccccCCCceeeecCCCCc------EEEEEcccccccccccCC--CCeEEEecCCCEEEE
Confidence            445567888888777654 77889999999999998654      245566777788887775  568999999999999


Q ss_pred             eecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCC-------ceEEEEeecCCccceEEEEEeeCCcc
Q 047728          336 WERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKEN-------EHICLSMLTGHSGPVKCLAVEKDDES  408 (474)
Q Consensus       336 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~  408 (474)
                      ||+++.... ....++...+.++.+++.+|++|+.||.|++||+...       ...++..+.+|.+.|++++|+  +. 
T Consensus       203 ~d~~~~~~~-~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~-  278 (293)
T d1p22a2         203 WDIECGACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF-  278 (293)
T ss_dssp             EETTTCCEE-EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SS-
T ss_pred             Eecccceee-eeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CC-
Confidence            999887655 4566788888999999999999999999999997432       122467889999999999995  44 


Q ss_pred             ccccceEEEEEecCCCcEEEEE
Q 047728          409 LSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       409 ~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                             +|+||+.||+|+|||
T Consensus       279 -------~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 -------QIVSSSHDDTILIWD  293 (293)
T ss_dssp             -------CEEECCSSSEEEEEC
T ss_pred             -------EEEEEecCCEEEEeC
Confidence                   799999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-34  Score=259.49  Aligned_cols=269  Identities=17%  Similarity=0.194  Sum_probs=215.9

Q ss_pred             ceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCC
Q 047728          100 NVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSK  178 (474)
Q Consensus       100 ~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~  178 (474)
                      .+++++|.+|.+.|++++++.  |+||+.||+|++||....   ...|...|.++.+. +..+++++.|++|++|++...
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~---~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM---HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE---ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC---CCCCCCCEEEEEecCCCeEEEEeecccccccccccc
Confidence            468899999999999999986  999999999999997653   46799999999998 678999999999999997643


Q ss_pred             CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728          179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV  258 (474)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  258 (474)
                      +                                       ....+.++++.+++..++++ .++.+.+|+..+++.+..+
T Consensus        78 ~---------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          78 E---------------------------------------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             E---------------------------------------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE
T ss_pred             c---------------------------------------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeec
Confidence            2                                       33456778888887666654 5677999999999888877


Q ss_pred             eecCcceeEEEecCCC-eEEEeeCC-CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728          259 IAHDDAVNSIVAGFDG-LVFTGSAD-GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW  336 (474)
Q Consensus       259 ~~~~~~v~~v~~~~~~-~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~  336 (474)
                      ..+ ..+.+  +++++ .+++++.+ +.+++|++.....     .......+...+++++|+|++.+|++++.||.|++|
T Consensus       118 ~~~-~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~  189 (287)
T d1pgua2         118 RLN-SPGSA--VSLSQNYVAVGLEEGNTIQVFKLSDLEV-----SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY  189 (287)
T ss_dssp             ECS-SCEEE--EEECSSEEEEEETTTSCEEEEETTEEEE-----EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccc-ceeee--eeccCcceeeeccccceeeeeeccccce-----eeeeeeccCCceeEEEeccCccccccccccccccce
Confidence            543 34444  44555 66666665 5799999864321     223334567889999999999999999999999999


Q ss_pred             ecCcccccceeeeecceeeEEEEe------------cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          337 ERELNLSHGGVLRGHKLAILCLVT------------AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       337 d~~~~~~~~~~~~~~~~~v~~~~~------------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      |+.+..........|...+.++.+            ++.+|++|+.|+.|+|||++.... .+..+.+|...|++++|+|
T Consensus       190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-~~~~~~~h~~~V~~v~~~~  268 (287)
T d1pgua2         190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-IIKALNAHKDGVNNLLWET  268 (287)
T ss_dssp             ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-CEEETTSSTTCEEEEEEEE
T ss_pred             eecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe-EEEEeCCCCCCeEEEEECC
Confidence            999887665666788888877653            467999999999999999976443 3567789999999999999


Q ss_pred             CCccccccceEEEEEecCCCcEEEEEc
Q 047728          405 DDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      ++         .|++++.|++|++|++
T Consensus       269 ~~---------~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 PS---------TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT---------EEEEEETTSCEEEEEE
T ss_pred             CC---------EEEEEECCCeEEEEEE
Confidence            86         4889999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-33  Score=268.61  Aligned_cols=303  Identities=14%  Similarity=0.172  Sum_probs=217.6

Q ss_pred             eeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCCcc--------ccccccCccCEEEEEe------c---CCEEEEEeC
Q 047728          104 GSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQRE--------FSGFKSNSGLVKAIVI------S---NEKIFSGHQ  166 (474)
Q Consensus       104 ~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~~--------~~~~~~h~~~V~~i~~------~---~~~l~s~~~  166 (474)
                      ...++|++.|+++++++++|+||+.|++|+|||....        ......|...+..+..      .   ...+++++.
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            3457999999999999999999999999999984311        1112234433333222      2   236789999


Q ss_pred             CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-----CCEEEEEECC
Q 047728          167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-----QNLLYSASWD  241 (474)
Q Consensus       167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~s~d  241 (474)
                      ||.|++|++................                      .....+...+..++|.++     +.++++++.|
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  145 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDL----------------------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK  145 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECC----------------------SCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             CCcEEEEEccCCCceeeeeccccce----------------------eeeccCCCceEEEEEecCCCcccccEEEEEcCC
Confidence            9999999987665432221111000                      001125566777888764     4688999999


Q ss_pred             CcEEEEEcCCcc------------------eeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728          242 KTFKVWRTSDYK------------------CLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ  303 (474)
Q Consensus       242 g~i~iwd~~~~~------------------~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  303 (474)
                      +++++|++....                  .......+...+.+++|+|+++|++|+.||.|++||++............
T Consensus       146 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~  225 (393)
T d1sq9a_         146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH  225 (393)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             CcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccc
Confidence            999999974221                  01111234567899999999999999999999999998655433333445


Q ss_pred             eeecccccEEEEEEcCCCCEEEEEcCCCc---EEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          304 TLLKQECAVTALAISPDAAIVYCGSSDGL---VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~---i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      .+.+|..+|.+++|+|++++|++|+.|+.   |++||++++.....+                              ...
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l------------------------------~~~  275 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL------------------------------SVP  275 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE------------------------------CBC
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeee------------------------------ccc
Confidence            66789999999999999999999998874   889998866433111                              011


Q ss_pred             CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728          381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA  460 (474)
Q Consensus       381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  460 (474)
                      .........+.+|.+.|++++|+|+++        +|+||+.|++|+|||+.++       .+.+.+.+|...|....+.
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~--------~l~S~s~D~~v~vWd~~~g-------~~~~~l~gH~~~v~~~~~~  340 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGE--------TLCSAGWDGKLRFWDVKTK-------ERITTLNMHCDDIEIEEDI  340 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSS--------EEEEEETTSEEEEEETTTT-------EEEEEEECCGGGCSSGGGC
T ss_pred             cccccceeeeecccCceeeeccCCCCC--------eeEEECCCCEEEEEECCCC-------CEEEEECCcCCcccCCccE
Confidence            111113456778999999999999999        9999999999999999988       6778899999999988888


Q ss_pred             CCCCcCCceeecc
Q 047728          461 PSFSSQGRICQKR  473 (474)
Q Consensus       461 p~~s~Dg~~l~~~  473 (474)
                      .+|++||..++++
T Consensus       341 ~~~~~~~~~~~~~  353 (393)
T d1sq9a_         341 LAVDEHGDSLAEP  353 (393)
T ss_dssp             CCBCTTSCBCSSC
T ss_pred             EEECCCCCEEEEc
Confidence            9999999988765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-33  Score=257.83  Aligned_cols=277  Identities=16%  Similarity=0.263  Sum_probs=230.7

Q ss_pred             cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ..+++++|.+.|++++|+  +++|+||+.||+|+|||+.+++...                                .+.
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~--------------------------------~~~   94 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH--------------------------------AIP   94 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--------------------------------EEE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE--------------------------------EEe
Confidence            345688999999999998  6799999999999999998876432                                234


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc----eeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccC
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK----CLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQ  293 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~  293 (474)
                      .|...|.+++|+|++.++++|+.|+.+++|+.....    ....+.+|...........+..++....+.....+.....
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG  174 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT
T ss_pred             cccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999999999999976543    4455667777777777776678888999999999987643


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCC
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSAD  371 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~d  371 (474)
                      .      .......+...+....+.+...++++++.|+.|++||+++.... ..+.+|...+.+  +++++++|++|+.|
T Consensus       175 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~-~~~~~h~~~i~~v~~~p~~~~l~s~s~d  247 (340)
T d1tbga_         175 Q------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             E------EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             c------ccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEE-EEEeCCCCCeEEEEECCCCCEEEEEeCC
Confidence            2      24455567778999999999999999999999999999887654 455678777755  55689999999999


Q ss_pred             CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728          372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG  451 (474)
Q Consensus       372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  451 (474)
                      +.|++||+.............+...|++++|+|++.        +|++|+.||.|++||+.++       .....+.+|.
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~~g~~dg~i~iwd~~~~-------~~~~~~~~H~  312 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR--------LLLAGYDDFNCNVWDALKA-------DRAGVLAGHD  312 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC--------EEEEEETTSCEEEEETTTC-------CEEEEECCCS
T ss_pred             CeEEEEeecccccccccccccccCceEEEEECCCCC--------EEEEEECCCEEEEEECCCC-------cEEEEEcCCC
Confidence            999999999887655555667888999999999999        9999999999999999887       5667788999


Q ss_pred             CCCCccccCCCCCcCCceeeccC
Q 047728          452 VAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       452 ~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ..|+++    +|+|||++|+++|
T Consensus       313 ~~V~~l----~~s~d~~~l~s~s  331 (340)
T d1tbga_         313 NRVSCL----GVTDDGMAVATGS  331 (340)
T ss_dssp             SCEEEE----EECTTSSCEEEEE
T ss_pred             CCEEEE----EEeCCCCEEEEEc
Confidence            999999    5678898888764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-33  Score=256.70  Aligned_cols=281  Identities=17%  Similarity=0.161  Sum_probs=211.8

Q ss_pred             EEEcCCEEEEeeCCC-cEEEEeCC----ccccccccC-ccCEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          116 LAAAGDLLYTGSDSK-NIRVWKNQ----REFSGFKSN-SGLVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg-~v~vwd~~----~~~~~~~~h-~~~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      +.++++.|+.++.+. .|+.|+..    .....+.+| ...|++++|+    +.+|++|+.||+|+|||+..+.......
T Consensus        25 ~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~  104 (325)
T d1pgua1          25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE  104 (325)
T ss_dssp             EETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeee
Confidence            444588888876554 36777743    335566677 5679999996    4589999999999999998765432221


Q ss_pred             ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeeeeeecCc
Q 047728          186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLESVIAHDD  263 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~  263 (474)
                      ..                        ....+..|..+|.+++|++++++|++++.  ++.+++|+..+++++..+.+|..
T Consensus       105 ~~------------------------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1         105 VN------------------------VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EE------------------------EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             cc------------------------cccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            11                        11234558899999999999999988764  67899999999999999999999


Q ss_pred             ceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCc
Q 047728          264 AVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWEREL  340 (474)
Q Consensus       264 ~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~  340 (474)
                      .|.+++|+|++  .+++++.|+.|++||.+....   .........+...|.+++|+|+ +.+|++++.|+.|++||+++
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~---~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF---SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE---EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             ccccccccccccceEEEeeccccccccccccccc---ceecccccCCCCccEEeeeccccceeccccccccceeeeeecc
Confidence            99999999988  578899999999999864321   1223344567888999999996 68999999999999999988


Q ss_pred             ccccceeeeecceee----EEEE-ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          341 NLSHGGVLRGHKLAI----LCLV-TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       341 ~~~~~~~~~~~~~~v----~~~~-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      +... ..+.+|...+    .++. +++++|++++.|+.|+|||+++++.........|...+..+++.+.+..       
T Consensus       238 ~~~~-~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  309 (325)
T d1pgua1         238 GEFL-KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-------  309 (325)
T ss_dssp             CCEE-EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-------
T ss_pred             cccc-ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-------
Confidence            7655 3445555443    4444 5789999999999999999999884433334444444445554443221       


Q ss_pred             EEEEecCCCcEEEEEc
Q 047728          416 ILYSGSLDKSVKMWRV  431 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~~  431 (474)
                      +|++++.||.|++||+
T Consensus       310 ~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         310 RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             EEEEEECCCEEEEEEC
Confidence            6899999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-33  Score=261.53  Aligned_cols=244  Identities=11%  Similarity=0.128  Sum_probs=198.0

Q ss_pred             CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728          147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS  224 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  224 (474)
                      ...+|+|++|+  +++|++|+.||.|+||++.+++....                              ..+.+|.++|+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~------------------------------~~l~gH~~~V~   55 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV------------------------------HELKEHNGQVT   55 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE------------------------------EEEECCSSCEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE------------------------------EEecCCCCCEE
Confidence            34689999998  67999999999999999987653221                              23456999999


Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCccee--eeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCL--ESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFF  301 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  301 (474)
                      +++|+|++++|++|+.|++|++||+.++...  ..+..|...|.+++|+|++ .|++++.|+.|++|+++....  ....
T Consensus        56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~--~~~~  133 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--WWVC  133 (371)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--EEEE
T ss_pred             EEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccc--cccc
Confidence            9999999999999999999999999876543  4456788999999999999 899999999999999886543  2223


Q ss_pred             eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-----------------cceeeeecceee--EEEEecC
Q 047728          302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-----------------HGGVLRGHKLAI--LCLVTAG  362 (474)
Q Consensus       302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------------~~~~~~~~~~~v--~~~~~~~  362 (474)
                      ......|...|.+++|+|++++|++|+.|+.|++||......                 .......|...+  +++++++
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  213 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG  213 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred             cccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc
Confidence            445567888999999999999999999999999999754321                 111223455555  4566789


Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          363 NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       363 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      ++|++++.|+.|++||+..++  .+..+..|..+|.+++|+|++.        +|++|. |+.+++|....
T Consensus       214 ~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~s~~fs~d~~--------~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         214 SRVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS--------LVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             SEEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE--------EEEEET-TSSCEEEEEET
T ss_pred             ccccccccCCcceEEeeeccc--ceeeeecccccceeeeecCCCC--------EEEEEc-CCceEEEEeeC
Confidence            999999999999999999887  5678889999999999999998        777654 78788876654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.5e-33  Score=253.68  Aligned_cols=249  Identities=17%  Similarity=0.225  Sum_probs=198.3

Q ss_pred             CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccce
Q 047728          138 QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGL  215 (474)
Q Consensus       138 ~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (474)
                      +...+.+++|...|++++|+  +++|++|+.||+|++||+++++.....                               
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-------------------------------   50 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------------------------------   50 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-------------------------------
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-------------------------------
Confidence            34567789999999999998  679999999999999999887654211                               


Q ss_pred             eeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce---eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEccc
Q 047728          216 WIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC---LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL  292 (474)
Q Consensus       216 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~  292 (474)
                      ..+|...|++++|+|++. +++++.|+.+++|+......   ......+...+.++++++++.+++++.++.+++|+...
T Consensus        51 ~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~  129 (299)
T d1nr0a2          51 PDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK  129 (299)
T ss_dssp             SCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             cCCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            123889999999999986 55677899999999865332   22334577889999999999666667788999998542


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeC
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSA  370 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~  370 (474)
                      .          ........+.+++|+|++++|++++.|+.|++||+++..........|...+.++  ++++++|++++.
T Consensus       130 ~----------~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         130 L----------TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             E----------EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             c----------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1          1122345678999999999999999999999999987765544555677666555  567999999999


Q ss_pred             CCcEEEEECCCCceE-EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          371 DMSICIWRRKENEHI-CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       371 dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      |+.|++||+.++... ....+.+|..+|++++|+|++.        +|++|+.||.|++||+.++..
T Consensus       200 d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--------~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         200 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV--------RLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTCTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccc--------ceEEEcCCCEEEEEECCCCCc
Confidence            999999999876532 2345678999999999999999        999999999999999987643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-31  Score=246.61  Aligned_cols=307  Identities=19%  Similarity=0.306  Sum_probs=220.8

Q ss_pred             CCCCcceeeeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeCCccc--ccccc--CccCEEEEEec--CCEEEEEeCC
Q 047728           95 DGFSPNVLIGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQREF--SGFKS--NSGLVKAIVIS--NEKIFSGHQD  167 (474)
Q Consensus        95 ~~~~~~~~~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~~--~~~~~--h~~~V~~i~~~--~~~l~s~~~d  167 (474)
                      ++....+++.++.+|++.|++++++ +++|++|+.||+|++|+.....  .....  +...+....+.  +..+++++.|
T Consensus        38 Wd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  117 (355)
T d1nexb2          38 YDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD  117 (355)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETT
T ss_pred             EECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCC
Confidence            3455668899999999999999987 7799999999999999965332  22222  22333344444  5589999999


Q ss_pred             CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728          168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW  247 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw  247 (474)
                      +.|++|++................  .............       .....|...+...  .+++++++++..|+.|++|
T Consensus       118 ~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~v~~~--~~~~~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         118 NTLHVWKLPKESSVPDHGEEHDYP--LVFHTPEENPYFV-------GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW  186 (355)
T ss_dssp             SEEEEEECCC-----------CCC--EEESCTTTCTTEE-------EEEECCSSCEEEE--EEETTEEEEEETTSCEEEE
T ss_pred             CcEEEEEccCCceeccccccceec--cceecccccccee-------eeeeecccccccc--ccccceeeeecccceeeee
Confidence            999999998765432211110000  0000000000000       1122355555544  5567899999999999999


Q ss_pred             EcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728          248 RTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC  326 (474)
Q Consensus       248 d~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  326 (474)
                      |+.+++.+.....+...+.++.+++++ .+++++.|+.|++||++...      ....+..|...|.++++++  ++|++
T Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~h~~~v~~~~~~~--~~l~~  258 (355)
T d1nexb2         187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------LMYTLQGHTALVGLLRLSD--KFLVS  258 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC------EEEEECCCSSCCCEEEECS--SEEEE
T ss_pred             ecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc------ccccccccccccccccccc--ceeee
Confidence            999999999998899999999999998 99999999999999998654      3566778999999999874  69999


Q ss_pred             EcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          327 GSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                      ++.||.|++||+++..........+...+.++.+++.++++|+ |+.|+|||+++++.+ ...+.+|.++|++++|+|+ 
T Consensus       259 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~-~~~~~~~~~~V~~v~~~~~-  335 (355)
T d1nexb2         259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV-HANILKDADQIWSVNFKGK-  335 (355)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC-CSCTTTTCSEEEEEEEETT-
T ss_pred             eecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEE-EEEecCCCCCEEEEEEcCC-
Confidence            9999999999998765433222223334456677888777765 899999999998743 2356789999999999986 


Q ss_pred             ccccccceEEEEEecCCCcEEEEEc
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      .        ++++++.||.++||.+
T Consensus       336 ~--------~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         336 T--------LVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             E--------EEEEEESSSCEEEEEE
T ss_pred             e--------EEEEEECCCcEEEEEE
Confidence            3        7889999999777754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-31  Score=245.11  Aligned_cols=275  Identities=25%  Similarity=0.374  Sum_probs=202.6

Q ss_pred             ccccccccCccCE-EEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          139 REFSGFKSNSGLV-KAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       139 ~~~~~~~~h~~~V-~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      +....+++|.+.| .++.+++++|+||+.||+|+|||+.+++...                                .+.
T Consensus         7 ~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--------------------------------~~~   54 (342)
T d2ovrb2           7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------------------------------TLV   54 (342)
T ss_dssp             CCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE--------------------------------ECC
T ss_pred             CcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEE--------------------------------EEe
Confidence            4556789999887 5688889999999999999999998876542                                334


Q ss_pred             eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE------------------------------
Q 047728          218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS------------------------------  267 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~------------------------------  267 (474)
                      +|...|.+++|+++  +|++|+.|+.+++|+............+...+..                              
T Consensus        55 ~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  132 (342)
T d2ovrb2          55 GHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV  132 (342)
T ss_dssp             CCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred             CCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceee
Confidence            59999999999874  8999999999999998765443332222211111                              


Q ss_pred             ---------EEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728          268 ---------IVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER  338 (474)
Q Consensus       268 ---------v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~  338 (474)
                               ........+++++.|+.|++||.+...      ....+..|...+..+.  +++.++++++.||.|++||+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~  204 (342)
T d2ovrb2         133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET------CLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDV  204 (342)
T ss_dssp             EECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE------EEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEET
T ss_pred             eecccccceeeccccceeeeecCCCeEEEeecccce------eeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeec
Confidence                     111112267778888888888876443      2344555665555544  46889999999999999999


Q ss_pred             CcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee---cCCccceEEEEEeeCCccccccceE
Q 047728          339 ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML---TGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      +..... ....+|...+.++++++++|++|+.|+.|++||+...+..  ..+   ..|...+.++.+++  .        
T Consensus       205 ~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~--------  271 (342)
T d2ovrb2         205 ETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL--QTLQGPNKHQSAVTCLQFNK--N--------  271 (342)
T ss_dssp             TTCCEE-EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE--EEECSTTSCSSCEEEEEECS--S--------
T ss_pred             ccceee-eEecccccceeEEecCCCEEEEEcCCCEEEEEeccccccc--ccccccceeeeceeecccCC--C--------
Confidence            887654 5667888999999999999999999999999999887643  333   34666777777765  4        


Q ss_pred             EEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728          416 ILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS  474 (474)
Q Consensus       416 ~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s  474 (474)
                      ++++|+.||+|++||+++++....  .......+|...|+++    +|+||++++++++
T Consensus       272 ~~~s~s~Dg~i~iwd~~tg~~i~~--~~~~~~~~~~~~v~~v----~~s~~~~~la~g~  324 (342)
T d2ovrb2         272 FVITSSDDGTVKLWDLKTGEFIRN--LVTLESGGSGGVVWRI----RASNTKLVCAVGS  324 (342)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEE--EEECTTGGGTCEEEEE----EECSSEEEEEEEC
T ss_pred             eeEEEcCCCEEEEEECCCCCEEEE--EecccCCCCCCCEEEE----EECCCCCEEEEEe
Confidence            899999999999999998743211  1112234577778888    6778888888764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.8e-29  Score=227.68  Aligned_cols=269  Identities=25%  Similarity=0.426  Sum_probs=212.7

Q ss_pred             cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728          140 EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH  219 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  219 (474)
                      .+..+..|...|+|+.+++++|+||+.||+|+|||+.+++...                                .+.+|
T Consensus         7 ~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~--------------------------------~l~~H   54 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--------------------------------ILTGH   54 (293)
T ss_dssp             CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE--------------------------------EECCC
T ss_pred             EEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE--------------------------------EEecC
Confidence            3445667889999999999999999999999999998876542                                34569


Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceee
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      ...|++++|  ++++|++|+.|+.|++|++..+........+...... .....+.++++..++.+++||........  
T Consensus        55 ~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  129 (293)
T d1p22a2          55 TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDIT--  129 (293)
T ss_dssp             SSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCE--
T ss_pred             CCCEeeeec--ccceeeccccccccccccccccccccccccccccccc-ccccccceeecccccceeEeecccccccc--
Confidence            999999987  5679999999999999999998877766554444333 33344489999999999999987554322  


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                       .......+...+..+.+.+  ..+++++.|+.|++||.++.... ..+.++...+..+.+++.++++++.||.|++||+
T Consensus       130 -~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~  205 (293)
T d1p22a2         130 -LRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFV-RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI  205 (293)
T ss_dssp             -EEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             -ccccccccccccccceecc--cccccccCCCceeeecCCCCcEE-EEEcccccccccccCCCCeEEEecCCCEEEEEec
Confidence             3345566777888777754  57788999999999999887654 4566788889999999999999999999999999


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC--CCcccccccCCCCCCCcc
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV--STTQQHPLEGHGVAPNSL  457 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~l  457 (474)
                      ++.+  .+....+|...+..+  .++..        +|++|+.||.|++||+.....+..  .......+.+|...|.++
T Consensus       206 ~~~~--~~~~~~~~~~~v~~~--~~~~~--------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v  273 (293)
T d1p22a2         206 ECGA--CLRVLEGHEELVRCI--RFDNK--------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  273 (293)
T ss_dssp             TTCC--EEEEECCCSSCEEEE--ECCSS--------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             ccce--eeeeecccceeeeec--cccce--------EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence            9887  456778888888764  45566        899999999999999976543322  224556788999999999


Q ss_pred             ccCC
Q 047728          458 PYAP  461 (474)
Q Consensus       458 ~~~p  461 (474)
                      +|++
T Consensus       274 ~~d~  277 (293)
T d1p22a2         274 QFDE  277 (293)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            7654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=234.94  Aligned_cols=285  Identities=11%  Similarity=0.144  Sum_probs=203.7

Q ss_pred             cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      .+...++|.+.|++|+|+  +++|++|+.||+|+|||++.........                             ...
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~-----------------------------~~~   53 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL-----------------------------QSL   53 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE-----------------------------EEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEE-----------------------------Eec
Confidence            355678899999999997  7799999999999999998765432211                             123


Q ss_pred             eccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCcceeeeeeecCccee-EEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728          218 KHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-SIVAGFDG-LVFTGSADGTVKVWRRELQG  294 (474)
Q Consensus       218 ~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~v~~~~~~-~l~~~~~dg~i~iwd~~~~~  294 (474)
                      +|..+|.+++|+|+ +.+|++|+.|+.|++|++...........+..... ...+.++. .+++++.++.+++||++...
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            49999999999986 56899999999999999998877776665554443 33344444 99999999999999998655


Q ss_pred             CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--ecceeeEE---EEecCCEEEEEe
Q 047728          295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--GHKLAILC---LVTAGNLVFSGS  369 (474)
Q Consensus       295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~v~~---~~~~~~~l~sgs  369 (474)
                      ....................+.+.+.+..+++++.|+.|++||++..........  .+.....+   +..++..+++++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  213 (342)
T d1yfqa_         134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             cceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec
Confidence            4333222222223344456677888899999999999999999987654433222  22222222   234688999999


Q ss_pred             CCCcEEEEECCCCceE-------EE------EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          370 ADMSICIWRRKENEHI-------CL------SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~-------~~------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      .||.+.+|+.......       ..      ....+|...|++++|+|++.        +|+||+.||.|+|||+.+++ 
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--------~lasg~~Dg~v~vWD~~~~~-  284 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--------FLYTAGSDGIISCWNLQTRK-  284 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC--------CEEEEETTSCEEEEETTTTE-
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc--------EEEEECCCCEEEEEECCCCc-
Confidence            9999999998643210       01      11245777899999999999        89999999999999998873 


Q ss_pred             CCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          437 PLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       437 ~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                            ....+..+ .....+    +|++||++++.+
T Consensus       285 ------~l~~~~~~-~~~~~~----~~s~~~~~l~~a  310 (342)
T d1yfqa_         285 ------KIKNFAKF-NEDSVV----KIACSDNILCLA  310 (342)
T ss_dssp             ------EEEECCCC-SSSEEE----EEEECSSEEEEE
T ss_pred             ------EEEEecCC-CCCEEE----EEEeCCCEEEEE
Confidence                  33334322 123334    567788888764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.6e-29  Score=230.08  Aligned_cols=288  Identities=13%  Similarity=0.104  Sum_probs=207.2

Q ss_pred             eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-----cccccccCccCEEEEEec---CCEEEEEeCCCeE
Q 047728          101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-----EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKI  170 (474)
Q Consensus       101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-----~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i  170 (474)
                      +++..+.+|++.|++++|+  +++||+|+.||+|+|||...     .+....+|.+.|.+++|.   +.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            5677788999999999886  88999999999999998532     223344699999999997   3489999999999


Q ss_pred             EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728          171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS  250 (474)
Q Consensus       171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~  250 (474)
                      ++|++...........                               .+........+.++...+++++.|+++++||++
T Consensus        82 ~~w~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTN-------------------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EEECSSSSSSEEECBS-------------------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             eeeecccccccccccc-------------------------------cccccccccccccccccccccccccccceeecc
Confidence            9999988765432211                               133344455566788899999999999999987


Q ss_pred             Ccceeeeeee----c--CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCC
Q 047728          251 DYKCLESVIA----H--DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAA  322 (474)
Q Consensus       251 ~~~~~~~~~~----~--~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~  322 (474)
                      +.........    +  ......+.+.+.+ .+++++.|+.|++||++.......   ..........+.+..+.+ ++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  207 (342)
T d1yfqa_         131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG---TIEESGLKYQIRDVALLPKEQE  207 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCC---EEEECSCSSCEEEEEECSGGGC
T ss_pred             ccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccce---eeeecccccceeeeEeecCCCC
Confidence            6544333322    1  2233445555555 899999999999999976554222   122233444566666555 778


Q ss_pred             EEEEEcCCCcEEEeecCcccccce--------------eeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728          323 IVYCGSSDGLVNFWERELNLSHGG--------------VLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHIC  386 (474)
Q Consensus       323 ~l~~~~~dg~i~v~d~~~~~~~~~--------------~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~  386 (474)
                      .+++++.||.+.+|+.........              ....|...+  ++++|++++|++|+.||.|++||+++++  .
T Consensus       208 ~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~--~  285 (342)
T d1yfqa_         208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK--K  285 (342)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE--E
T ss_pred             EEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc--E
Confidence            999999999999998754422111              112333333  5677889999999999999999999887  3


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      +..+..+ ..+..++|+|++.        +|++++.|+.+++|....
T Consensus       286 l~~~~~~-~~~~~~~~s~~~~--------~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         286 IKNFAKF-NEDSVVKIACSDN--------ILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             EEECCCC-SSSEEEEEEECSS--------EEEEEEECTHHHHCSSSC
T ss_pred             EEEecCC-CCCEEEEEEeCCC--------EEEEEEcCCcEEEeeeeC
Confidence            4555433 3456688888888        899998899988886543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=230.14  Aligned_cols=268  Identities=16%  Similarity=0.205  Sum_probs=199.9

Q ss_pred             ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728          139 REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK  218 (474)
Q Consensus       139 ~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (474)
                      +.++.+++|...|++++|+.  |+||+.||+|++||+.+..                                     .+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-------------------------------------~~   44 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH-------------------------------------QD   44 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE-------------------------------------CC
T ss_pred             ceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC-------------------------------------CC
Confidence            45678899999999999986  9999999999999986532                                     23


Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      |...|.+++++++ ..+++++.|++|++|++...+       ....+..+.+.+++.++..+.++.+.+|+......   
T Consensus        45 h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  113 (287)
T d1pgua2          45 HSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI---  113 (287)
T ss_dssp             CCSCEEEEECCST-TCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE---
T ss_pred             CCCCEEEEEecCC-CeEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEeecccceeeeccceee---
Confidence            9999999999876 468999999999999875432       34456788889999766677788899998765432   


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-cEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-LVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSIC  375 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~  375 (474)
                         .... .....+  .++++++..+++++.++ .+++|++............|...+  +++++++.+|++|+.||.|+
T Consensus       114 ---~~~~-~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  187 (287)
T d1pgua2         114 ---IKSV-RLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL  187 (287)
T ss_dssp             ---EEEE-ECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ---eeec-ccccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccccc
Confidence               1121 222233  45677788888877765 799999876654444444455444  56677899999999999999


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCcccc--ccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS--REKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVA  453 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~--~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  453 (474)
                      +||+.+++.. ...+.+|..+|++++|+|.+....  .....+|++|+.|++|+||++.+..      .....+.+|...
T Consensus       188 i~d~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~------~~~~~~~~h~~~  260 (287)
T d1pgua2         188 LYDLQSREVK-TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM------KIIKALNAHKDG  260 (287)
T ss_dssp             EEETTTTEEE-ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT------CCEEETTSSTTC
T ss_pred             ceeecccccc-cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC------eEEEEeCCCCCC
Confidence            9999988643 345778999999999998754211  1122289999999999999997643      345667789999


Q ss_pred             CCccccCCCCCcCCceeecc
Q 047728          454 PNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       454 v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      |+++.    |+||+++++.+
T Consensus       261 V~~v~----~~~~~~l~s~g  276 (287)
T d1pgua2         261 VNNLL----WETPSTLVSSG  276 (287)
T ss_dssp             EEEEE----EEETTEEEEEE
T ss_pred             eEEEE----ECCCCEEEEEE
Confidence            99995    45677766543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.1e-28  Score=225.68  Aligned_cols=239  Identities=13%  Similarity=0.137  Sum_probs=180.5

Q ss_pred             CEEEEEec--CCEEEEEeCCC-eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec-cCCeeE
Q 047728          150 LVKAIVIS--NEKIFSGHQDG-KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH-FDAISS  225 (474)
Q Consensus       150 ~V~~i~~~--~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~  225 (474)
                      .+++++|+  ++.|+.++.+. .|+.|+..........                              .+.+| ...|++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~gh~~~~v~~   68 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVV------------------------------QFTGHGSSVVTT   68 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEE------------------------------EECTTTTSCEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceE------------------------------EEeCCCCCCEEE
Confidence            45677776  67888776554 3555654443322111                              22335 568999


Q ss_pred             EEecC--CCCEEEEEECCCcEEEEEcCCcceee--------eeeecCcceeEEEecCCC-eEEEee--CCCcEEEEEccc
Q 047728          226 LSMSE--DQNLLYSASWDKTFKVWRTSDYKCLE--------SVIAHDDAVNSIVAGFDG-LVFTGS--ADGTVKVWRREL  292 (474)
Q Consensus       226 l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~--------~~~~~~~~v~~v~~~~~~-~l~~~~--~dg~i~iwd~~~  292 (474)
                      ++|+|  ++.+|++|+.||+|+|||+..++...        .+..|.++|.+++|++++ .+++++  .++.+++|+.+.
T Consensus        69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~  148 (325)
T d1pgua1          69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS  148 (325)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred             EEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc
Confidence            99998  66899999999999999997655433        234578899999999999 555554  477899999875


Q ss_pred             CCCceeeeeeeeeecccccEEEEEEcCCCCE-EEEEcCCCcEEEeecCccccccee--eeecceeeEE--EEec-CCEEE
Q 047728          293 QGKGTKHFFSQTLLKQECAVTALAISPDAAI-VYCGSSDGLVNFWERELNLSHGGV--LRGHKLAILC--LVTA-GNLVF  366 (474)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~~v~~--~~~~-~~~l~  366 (474)
                      ..      ....+..|...|.+++|+|++.. +++++.|+.+++||....+.....  ...|...+.+  ++|+ +.+|+
T Consensus       149 ~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         149 GN------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             CC------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             cc------cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence            43      35566789999999999998764 678999999999998765443322  2355555655  4554 68999


Q ss_pred             EEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe---eCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          367 SGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE---KDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       367 sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +++.|+.|++||+++++  ++..+.+|..++.++.|+   ++++        +|++++.|+.|+|||++++
T Consensus       223 s~~~d~~i~iwd~~~~~--~~~~l~~~~~~v~~~~~s~~~~dg~--------~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         223 TVGSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWLDSQ--------KFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             EEETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEESSSS--------EEEEEETTSEEEEEETTTT
T ss_pred             ccccccceeeeeecccc--ccccccccccccccceeeeeccCCC--------EEEEEeCCCeEEEEECCCC
Confidence            99999999999999888  567888898888777766   6777        8999999999999999887

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=5.2e-27  Score=219.79  Aligned_cols=270  Identities=9%  Similarity=0.005  Sum_probs=204.1

Q ss_pred             EEEEEE-cCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCC--eEEEEecCCCCcceeeeec
Q 047728          113 IYSLAA-AGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDG--KIRVWKVSSKDASIHKRVG  187 (474)
Q Consensus       113 i~~~~~-~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~  187 (474)
                      ...++| +|+++|+++ +|.|++||..........|...|.+++|+  ++.|++++.+.  .|++||+++++..      
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~------   79 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE------   79 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE------
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE------
Confidence            467899 899999987 57899999764433334799999999998  55777666553  7999999887543      


Q ss_pred             ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE
Q 047728          188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS  267 (474)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~  267 (474)
                                                 .+..|...|.+++|+|++++|++++.++.+++|++.+++....+..|...+.+
T Consensus        80 ---------------------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (360)
T d1k32a3          80 ---------------------------KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  132 (360)
T ss_dssp             ---------------------------ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             ---------------------------EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccc
Confidence                                       12348899999999999999999999999999999999999999999999999


Q ss_pred             EEecCCC-eEEEe----------eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728          268 IVAGFDG-LVFTG----------SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW  336 (474)
Q Consensus       268 v~~~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~  336 (474)
                      ++|+|++ .|+.+          ..++.+++||+....       ......+...+..++|+|+++.|++++.++.+.+|
T Consensus       133 ~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             hhhccceeeeeeeccccccceeeccccceeeeccccCc-------eeeecccccccccccccCCCCEEEEEeCCCceEcc
Confidence            9999999 55543          345569999987542       23445567778999999999999999999999999


Q ss_pred             ecCcccccc------eeee--------------------------e----------cceeeEEEEe--------------
Q 047728          337 ERELNLSHG------GVLR--------------------------G----------HKLAILCLVT--------------  360 (474)
Q Consensus       337 d~~~~~~~~------~~~~--------------------------~----------~~~~v~~~~~--------------  360 (474)
                      |........      ....                          +          .......+..              
T Consensus       206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (360)
T d1k32a3         206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG  285 (360)
T ss_dssp             CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred             cccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecC
Confidence            854321000      0000                          0          0000111111              


Q ss_pred             -cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728          361 -AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP  437 (474)
Q Consensus       361 -~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~  437 (474)
                       ...++++++.++.|++||+.+++..      .|.+.|.+++|+||++        +|++++.||.|++|++.+++.+
T Consensus       286 ~~~~~~~~~~~~~~i~~~d~~~~~~~------~~~~~v~~~~~SpDG~--------~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         286 EFAAYYQGAPEKGVLLKYDVKTRKVT------EVKNNLTDLRLSADRK--------TVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCCEE------EEEEEEEEEEECTTSC--------EEEEEETTSCEEEEESSCTTSC
T ss_pred             CCeeEEEecCCCCEEEEEECCCCeEE------EecCCcCEEEECCCCC--------EEEEEECCCeEEEEECCCCCcc
Confidence             1124556667899999999887632      2445699999999999        8999999999999999988543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-25  Score=211.36  Aligned_cols=233  Identities=15%  Similarity=0.156  Sum_probs=163.2

Q ss_pred             CCEEEEeeCCCcEEEEeCCc--c----------ccccccCccCEEEEEec-------CCEEEEEeCCCeEEEEecCCCCc
Q 047728          120 GDLLYTGSDSKNIRVWKNQR--E----------FSGFKSNSGLVKAIVIS-------NEKIFSGHQDGKIRVWKVSSKDA  180 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~--~----------~~~~~~h~~~V~~i~~~-------~~~l~s~~~dg~i~vwd~~~~~~  180 (474)
                      +.++++++.||.|++|+...  .          ......+...+..+++.       +.++++++.||++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            34788999999999997321  1          11112345566666664       35789999999999999875432


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee--
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV--  258 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--  258 (474)
                      ........             ......+ .........+...+.+++|+|++ +|++|+.|++|++||+.+++++..+  
T Consensus       159 ~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~  223 (393)
T d1sq9a_         159 ESNSLTLN-------------WSPTLEL-QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES  223 (393)
T ss_dssp             HHHHTTTC-------------CCCEEEE-EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             ccceeeee-------------eccceec-ccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccc
Confidence            21100000             0000010 01111222366678999999987 8999999999999999998876654  


Q ss_pred             ----eecCcceeEEEecCCC-eEEEeeCCCc---EEEEEcccCCCcee-------eeeeeeeecccccEEEEEEcCCCCE
Q 047728          259 ----IAHDDAVNSIVAGFDG-LVFTGSADGT---VKVWRRELQGKGTK-------HFFSQTLLKQECAVTALAISPDAAI  323 (474)
Q Consensus       259 ----~~~~~~v~~v~~~~~~-~l~~~~~dg~---i~iwd~~~~~~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~  323 (474)
                          .+|..+|++++|+|++ +|++|+.|++   |++||++.+.....       ........+|...|++++|+|++++
T Consensus       224 ~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~  303 (393)
T d1sq9a_         224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET  303 (393)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE
T ss_pred             ccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCe
Confidence                4688999999999999 9999998875   89999876543211       1122334579999999999999999


Q ss_pred             EEEEcCCCcEEEeecCcccccceeeeecceee------EEEEecCCEEEEE
Q 047728          324 VYCGSSDGLVNFWERELNLSHGGVLRGHKLAI------LCLVTAGNLVFSG  368 (474)
Q Consensus       324 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v------~~~~~~~~~l~sg  368 (474)
                      |++++.|++|++||++++..+ ..+.+|...|      .++.+++..++++
T Consensus       304 l~S~s~D~~v~vWd~~~g~~~-~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         304 LCSAGWDGKLRFWDVKTKERI-TTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEEETTSEEEEEETTTTEEE-EEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eEEECCCCEEEEEECCCCCEE-EEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            999999999999999988655 5678887665      4566666666544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.6e-23  Score=201.17  Aligned_cols=309  Identities=12%  Similarity=0.063  Sum_probs=207.8

Q ss_pred             EEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          122 LLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      ++++++.||+|+|||..  +.+..+..|. .+..++|+  |++|++++.|++|++||+.+++......+..         
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~---------  103 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI---------  103 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC---------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC---------
Confidence            56888999999999954  6677777764 58999998  7799999999999999999987654333321         


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--  274 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--  274 (474)
                                        ..+|...+.+++|+|||++|+++ ..++.+++||..+++++..+..|...+..+.+.+++  
T Consensus       104 ------------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (426)
T d1hzua2         104 ------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  165 (426)
T ss_dssp             ------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             ------------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce
Confidence                              12377778888999999987554 588999999999999988887776666555555554  


Q ss_pred             eEEEeeCCCcEEEEEcccCCCce------eeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCccccccee
Q 047728          275 LVFTGSADGTVKVWRRELQGKGT------KHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGV  347 (474)
Q Consensus       275 ~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~  347 (474)
                      ..++.+.|+...++.........      ..........+...+..+.|+|++++++++. .+..+.+++..........
T Consensus       166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence            44455555554444433211100      0001233446677899999999999887765 4566888998877554333


Q ss_pred             ee---ecceeeEEEEecCC---EEEEEeCCCcEEEEECCCCc-----eEEEEeecCCccceEEEEEeeCCccccccceEE
Q 047728          348 LR---GHKLAILCLVTAGN---LVFSGSADMSICIWRRKENE-----HICLSMLTGHSGPVKCLAVEKDDESLSREKRWI  416 (474)
Q Consensus       348 ~~---~~~~~v~~~~~~~~---~l~sgs~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~  416 (474)
                      ..   .+......+...+.   ..++.+.|+.+.+|+.....     ......+.+|...+..++|+|+++        +
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~--------~  317 (426)
T d1hzua2         246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS--------H  317 (426)
T ss_dssp             ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS--------E
T ss_pred             ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc--------e
Confidence            22   12222333333332   22234467888888875431     124678899999999999999999        7


Q ss_pred             EE-------EecCCCcEEEEEccCCCCCCCCCc--ccccccCCCCCCCccccCCCCCcCCcee
Q 047728          417 LY-------SGSLDKSVKMWRVSEQAPPLVSTT--QQHPLEGHGVAPNSLPYAPSFSSQGRIC  470 (474)
Q Consensus       417 l~-------s~s~Dg~i~vw~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~~p~~s~Dg~~l  470 (474)
                      |+       +++.|++|+|||+.+++.......  ....+..+...+    ++++|||||+.+
T Consensus       318 l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv----~~~~fSpDGk~i  376 (426)
T d1hzua2         318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV----VQPEYNKRGDEV  376 (426)
T ss_dssp             EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE----EEEEECSSSSEE
T ss_pred             EEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccE----EEEEECCCCCEE
Confidence            77       466789999999998764432111  011122333333    455899999855

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=3e-24  Score=200.74  Aligned_cols=189  Identities=10%  Similarity=-0.021  Sum_probs=149.5

Q ss_pred             EEEEe-cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC
Q 047728          152 KAIVI-SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE  230 (474)
Q Consensus       152 ~~i~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~  230 (474)
                      ..... +++++++++ +|.|++|++..+....                                  .+|...|.+++|+|
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----------------------------------~~~~~~v~~~~~sp   52 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----------------------------------VPEPLRIRYVRRGG   52 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----------------------------------CSCCSCEEEEEECS
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----------------------------------ccCCCCEEEEEECC
Confidence            34454 467777776 5789999998765421                                  13889999999999


Q ss_pred             CCCEEEEEECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec
Q 047728          231 DQNLLYSASWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK  307 (474)
Q Consensus       231 ~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  307 (474)
                      |+++|++++.+.  .|++||+++++.. .+..|...|.+++|+|++ +|++++.++.+++|++.....      ......
T Consensus        53 Dg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~------~~~~~~  125 (360)
T d1k32a3          53 DTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP------TVIERS  125 (360)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE------EEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccce------eeeeec
Confidence            999998877553  7999999887654 566889999999999999 999999999999999976542      455667


Q ss_pred             ccccEEEEEEcCCCCEEEEEc----------CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEE
Q 047728          308 QECAVTALAISPDAAIVYCGS----------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIW  377 (474)
Q Consensus       308 ~~~~v~~l~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iw  377 (474)
                      +...+.+++|+|++++|+.+.          .++.+++||+.++.........+......++++|++|++++.|+.+.+|
T Consensus       126 ~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcc
Confidence            788899999999999998653          3456899999887654433344445567888999999999999999999


Q ss_pred             ECCCC
Q 047728          378 RRKEN  382 (474)
Q Consensus       378 d~~~~  382 (474)
                      |....
T Consensus       206 d~~~~  210 (360)
T d1k32a3         206 DRVVL  210 (360)
T ss_dssp             CSSSS
T ss_pred             ccccc
Confidence            87543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1e-21  Score=188.21  Aligned_cols=294  Identities=12%  Similarity=0.068  Sum_probs=193.3

Q ss_pred             EEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728          122 LLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK  197 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  197 (474)
                      ++++.+.||+|.|||.  .+.+..+..| ..+..++|+  +++|++++.||+|++||+.+++......+..         
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~---------  103 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI---------  103 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC---------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec---------
Confidence            4689999999999994  4677777766 469999998  7799999999999999999876543333221         


Q ss_pred             eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE-EEEECCCcEEEEEcCCcceeeeeeec-----------Ccce
Q 047728          198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL-YSASWDKTFKVWRTSDYKCLESVIAH-----------DDAV  265 (474)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~-----------~~~v  265 (474)
                                        ..+|...+.+..|+|||++| +++..+++|++||..+++++..+..+           ....
T Consensus       104 ------------------~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2         104 ------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             ------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             ------------------CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence                              12366667778889999986 67888999999999999988877643           3445


Q ss_pred             eEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCccc
Q 047728          266 NSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNL  342 (474)
Q Consensus       266 ~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~  342 (474)
                      ..+.+++++  .+++...++.|.+||......     .......+...+..++|+|+++++++++. ++.+.++|.....
T Consensus       166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-----~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         166 AAILASHYRPEFIVNVKETGKILLVDYTDLNN-----LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             eEEEECCCCCEEEEEEccCCeEEEEEccCCCc-----ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            678889988  566777889999999865432     12223345567899999999998777665 5578888987765


Q ss_pred             ccceeeee----cceeeEEEE-ec-CCEEEEEe-CCCcEEEEECCCCce-----EEEEeecC------------------
Q 047728          343 SHGGVLRG----HKLAILCLV-TA-GNLVFSGS-ADMSICIWRRKENEH-----ICLSMLTG------------------  392 (474)
Q Consensus       343 ~~~~~~~~----~~~~v~~~~-~~-~~~l~sgs-~dg~i~iwd~~~~~~-----~~~~~~~~------------------  392 (474)
                      .......+    |......+. +. +...++.. .++.|.+|+......     .....+..                  
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw  320 (432)
T d1qksa2         241 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  320 (432)
T ss_dssp             EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             EEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCcccee
Confidence            54332221    222222222 22 22333332 367788887644321     00111111                  


Q ss_pred             -------CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCc
Q 047728          393 -------HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSS  465 (474)
Q Consensus       393 -------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~  465 (474)
                             |......+++ ||++        .|++++.|+.+++|++.++.          .+..|...+.    +++|||
T Consensus       321 ~~~~~~~~~~~~~sv~v-pDg~--------~la~~s~d~~~k~w~~~~~~----------~l~~~~~~v~----~~~fS~  377 (432)
T d1qksa2         321 VDATLNPEAEISGSVAV-FDIK--------AMTGDGSDPEFKTLPIAEWA----------GITEGQPRVV----QGEFNK  377 (432)
T ss_dssp             EECTTCSSHHHHTCEEE-EEGG--------GCCCSSSCCCEEEECHHHHH----------TCCSSCCEEE----EEEECT
T ss_pred             ecccCCCCCCeeeEEEE-Eech--------hhcccccCCceEeccccccc----------ccCCCCCcEE----EeEECC
Confidence                   1111222333 5555        67788888888888876541          2223444444    458999


Q ss_pred             CCceee
Q 047728          466 QGRICQ  471 (474)
Q Consensus       466 Dg~~l~  471 (474)
                      ||+.+.
T Consensus       378 DG~~v~  383 (432)
T d1qksa2         378 DGTEVW  383 (432)
T ss_dssp             TSSEEE
T ss_pred             CCCEEE
Confidence            998664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.6e-19  Score=163.85  Aligned_cols=260  Identities=15%  Similarity=0.144  Sum_probs=186.0

Q ss_pred             EEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728          124 YTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC  198 (474)
Q Consensus       124 ~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (474)
                      ++++.|++|.|||..  +.+..+.. ...+..++++  +++| +++..++.|++||+.+++......             
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-------------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-------------   71 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-------------
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-------------
Confidence            467789999999954  33444443 3457889998  5666 567789999999999876543221             


Q ss_pred             ecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE-EECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--e
Q 047728          199 SMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS-ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--L  275 (474)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~  275 (474)
                                          ....+..++|++++..+++ +..++.+.+|+..+++....+..+ ..+.++.+++++  .
T Consensus        72 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~  130 (301)
T d1l0qa2          72 --------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKL  130 (301)
T ss_dssp             --------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEE
T ss_pred             --------------------ccccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCee
Confidence                                2234678999999886655 456788999999999888887654 556889999999  4


Q ss_pred             EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-CcEEEeecCcccccceeeeeccee
Q 047728          276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-GLVNFWERELNLSHGGVLRGHKLA  354 (474)
Q Consensus       276 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~~  354 (474)
                      ++++..++.+.+|+......       .........+..++++|++..++++..+ +.+.+|+.................
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (301)
T d1l0qa2         131 YVTNNGDKTVSVINTVTKAV-------INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS  203 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEE-------EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE
T ss_pred             eeeeccccceeeeeccccce-------eeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcc
Confidence            56777788999999875432       2223344568899999999988877765 556677766554332222222233


Q ss_pred             eEEEEecCCEEEEEeC---CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          355 ILCLVTAGNLVFSGSA---DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       355 v~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      -..+.++++.++.+..   ++.|++||..+++.  +..+.. ...+.+++|+||++.       ++++++.|+.|++||+
T Consensus       204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~~-~~~~~~va~spdg~~-------l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPV-GPDPAGIAVTPDGKK-------VYVALSFCNTVSVIDT  273 (301)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEEC-CSSEEEEEECTTSSE-------EEEEETTTTEEEEEET
T ss_pred             eeeccccccccccccccceeeeeeeeecCCCeE--EEEEcC-CCCEEEEEEeCCCCE-------EEEEECCCCeEEEEEC
Confidence            4667788888776543   46899999998873  444543 346899999999982       3468889999999999


Q ss_pred             cCCC
Q 047728          432 SEQA  435 (474)
Q Consensus       432 ~~~~  435 (474)
                      .+++
T Consensus       274 ~t~~  277 (301)
T d1l0qa2         274 ATNT  277 (301)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            8873

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.8e-21  Score=178.40  Aligned_cols=296  Identities=9%  Similarity=0.014  Sum_probs=192.9

Q ss_pred             CEEEEeeCCCcEEEEeCC--cccccccc--CccCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728          121 DLLYTGSDSKNIRVWKNQ--REFSGFKS--NSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK  193 (474)
Q Consensus       121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~--h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  193 (474)
                      +||++++.|++|+|||..  +.+..+..  +...+.+++++  ++++ ++++.++.|.+||+.+++..........    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~----   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC----
Confidence            589999999999999965  34444443  34557788887  5666 5667899999999999876544332211    


Q ss_pred             eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------------CCCcEEEEEcCCcceeeeeeec
Q 047728          194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------------WDKTFKVWRTSDYKCLESVIAH  261 (474)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~  261 (474)
                                             ..+...+..++|+|++++++++.            .+..+.+||..+++....+.. 
T Consensus        78 -----------------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  133 (337)
T d1pbyb_          78 -----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             -----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             -----------------------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-
Confidence                                   11344566899999999998876            467899999999998888765 


Q ss_pred             CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeee---------------eeccc--ccEEEEEEcCCCCE
Q 047728          262 DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT---------------LLKQE--CAVTALAISPDAAI  323 (474)
Q Consensus       262 ~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~--~~v~~l~~~~~~~~  323 (474)
                      ...+..+++++++ .+++++  +.+.+||...............               .....  ..........+...
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         134 PRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             cCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence            4567899999999 777765  4477898764432110000000               00000  00111111122222


Q ss_pred             EEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEE
Q 047728          324 VYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA  401 (474)
Q Consensus       324 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~  401 (474)
                      +..+..++.+.+||...+.........+....  ..+.+++.+++.+  ++.|++||+.+++.  +..+. +...+.+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~--~~~~~-~~~~~~~~~  286 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS--IKRVP-LPHSYYSVN  286 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE--EEEEE-CSSCCCEEE
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcE--EEEEc-CCCCEEEEE
Confidence            22334455688888887765544444444444  4455667777665  58999999999874  33443 556789999


Q ss_pred             EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcC
Q 047728          402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQ  466 (474)
Q Consensus       402 ~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~D  466 (474)
                      |+||++        +|++++.|+.|+|||+.+.+       ....+.-......++....-|++|
T Consensus       287 ~s~dG~--------~l~v~~~~~~i~v~D~~t~~-------~v~~i~~~g~~~~~~~~~~~~~~~  336 (337)
T d1pbyb_         287 VSTDGS--------TVWLGGALGDLAAYDAETLE-------KKGQVDLPGNASMSLASVRLFTRD  336 (337)
T ss_dssp             ECTTSC--------EEEEESBSSEEEEEETTTCC-------EEEEEECGGGCCCBTCCCEEEECC
T ss_pred             ECCCCC--------EEEEEeCCCcEEEEECCCCc-------EEEEEECCCCCccceeeeeEEcCC
Confidence            999999        89999999999999999873       333343333344455544556655

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=9.6e-21  Score=181.42  Aligned_cols=298  Identities=6%  Similarity=-0.079  Sum_probs=195.7

Q ss_pred             CCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--cc-----ccccccCccCEEEEEec--CCEE-EE
Q 047728           96 GFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--RE-----FSGFKSNSGLVKAIVIS--NEKI-FS  163 (474)
Q Consensus        96 ~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~-----~~~~~~h~~~V~~i~~~--~~~l-~s  163 (474)
                      +....+.++.+..|. .+..++|+  |++|++++.||.|++||..  +.     +.....|.+.+.+..|+  +++| ++
T Consensus        48 D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs  126 (432)
T d1qksa2          48 DGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG  126 (432)
T ss_dssp             ETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEE
Confidence            456677888887775 46666654  9999999999999999954  21     22334566666666665  6665 78


Q ss_pred             EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCC
Q 047728          164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDK  242 (474)
Q Consensus       164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg  242 (474)
                      +..+++|++||..+++............                     ...-..+......+.+++++..++ +...++
T Consensus       127 ~~~~~~v~i~d~~t~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         127 AYWPPQYVIMDGETLEPKKIQSTRGMTY---------------------DEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCEECT---------------------TTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             cCCCCeEEEEeCccccceeeeccCCccc---------------------cceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence            8899999999999987664433211100                     011123566778899999988765 556779


Q ss_pred             cEEEEEcCCcceeeeee-ecCcceeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeee---------------
Q 047728          243 TFKVWRTSDYKCLESVI-AHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQT---------------  304 (474)
Q Consensus       243 ~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------------  304 (474)
                      .|.+||..+.+...... .+...+.+++++|++ ++++++ .++.+.++|.+....... .....               
T Consensus       186 ~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSSBCCTTCEEEEETT
T ss_pred             eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE-eccCccccccCcccceecCC
Confidence            99999998877655433 345678899999999 555554 456788888753221000 00000               


Q ss_pred             ------------------------eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe
Q 047728          305 ------------------------LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT  360 (474)
Q Consensus       305 ------------------------~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  360 (474)
                                              ...+...+....+.|++..+++++.+...++|+.......     ......+++ +
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~-----~~~~~sv~v-p  338 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE-----AEISGSVAV-F  338 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS-----HHHHTCEEE-E
T ss_pred             CCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC-----CCeeeEEEE-E
Confidence                                    0112224555666666666777777777777764432111     001122333 8


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe----cCCCcEEEEEccCC
Q 047728          361 AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG----SLDKSVKMWRVSEQ  434 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~----s~Dg~i~vw~~~~~  434 (474)
                      +++.+++++.|+.+++|++.+..     .+..|...|..++|+|||+.       ++++.    ..+|.|+|||..+.
T Consensus       339 Dg~~la~~s~d~~~k~w~~~~~~-----~l~~~~~~v~~~~fS~DG~~-------v~~S~~~~~~~~g~i~i~D~~T~  404 (432)
T d1qksa2         339 DIKAMTGDGSDPEFKTLPIAEWA-----GITEGQPRVVQGEFNKDGTE-------VWFSVWNGKDQESALVVVDDKTL  404 (432)
T ss_dssp             EGGGCCCSSSCCCEEEECHHHHH-----TCCSSCCEEEEEEECTTSSE-------EEEEEECCTTSCCEEEEEETTTT
T ss_pred             echhhcccccCCceEeccccccc-----ccCCCCCcEEEeEECCCCCE-------EEEEEecCCCCCCcEEEEECCCc
Confidence            99999999999999999985543     34467778999999999983       33443    25789999999887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=5.8e-19  Score=160.01  Aligned_cols=249  Identities=16%  Similarity=0.187  Sum_probs=178.1

Q ss_pred             EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEE
Q 047728          161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SAS  239 (474)
Q Consensus       161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s  239 (474)
                      .++.+.|++|.+||+.+++......                                 ....+..++|+|+|++|+ +++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~---------------------------------~g~~p~~va~spdG~~l~v~~~   51 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIP---------------------------------VGSNPMGAVISPDGTKVYVANA   51 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE---------------------------------CSSSEEEEEECTTSSEEEEEEG
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEE---------------------------------CCCCceEEEEeCCCCEEEEEEC
Confidence            3467789999999999886543322                                 234577899999999875 566


Q ss_pred             CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEE
Q 047728          240 WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI  317 (474)
Q Consensus       240 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  317 (474)
                      .++.|++||+.+++.+..+..+.. +..+.+++++  .++++..++.+.+|+......       .....+...+.++++
T Consensus        52 ~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  123 (301)
T d1l0qa2          52 HSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-------AGTVKTGKSPLGLAL  123 (301)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------EEEEECSSSEEEEEE
T ss_pred             CCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeeccccccee-------eeeccccccceEEEe
Confidence            789999999999999999877654 5889999998  566677788999999875432       223344556789999


Q ss_pred             cCCCCEEE-EEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC-CcEEEEECCCCceEEEEeecCCcc
Q 047728          318 SPDAAIVY-CGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD-MSICIWRRKENEHICLSMLTGHSG  395 (474)
Q Consensus       318 ~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~h~~  395 (474)
                      +|++..++ ++..++.+.+|+..+.................+++++..++++..+ +.+.+|+....+.  ..... ...
T Consensus       124 ~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~  200 (301)
T d1l0qa2         124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--IDTVK-VEA  200 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE-CSS
T ss_pred             ecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceee--eeccc-ccC
Confidence            99998775 4556788999999887666544444445567778888888877765 5677777776652  33333 335


Q ss_pred             ceEEEEEeeCCccccccceEEEEEe---cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCcee-e
Q 047728          396 PVKCLAVEKDDESLSREKRWILYSG---SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRIC-Q  471 (474)
Q Consensus       396 ~v~~l~~~~~~~~~~~~~~~~l~s~---s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l-~  471 (474)
                      .+..++|++++.        .++.+   ..++.|++||+.+++       ....+..+ ..+.++    +|||||+.| +
T Consensus       201 ~~~~~~~~~~g~--------~~~v~~~~~~~~~v~v~D~~t~~-------~~~~~~~~-~~~~~v----a~spdg~~l~v  260 (301)
T d1l0qa2         201 APSGIAVNPEGT--------KAYVTNVDKYFNTVSMIDTGTNK-------ITARIPVG-PDPAGI----AVTPDGKKVYV  260 (301)
T ss_dssp             EEEEEEECTTSS--------EEEEEEECSSCCEEEEEETTTTE-------EEEEEECC-SSEEEE----EECTTSSEEEE
T ss_pred             Ccceeecccccc--------ccccccccceeeeeeeeecCCCe-------EEEEEcCC-CCEEEE----EEeCCCCEEEE
Confidence            578899999988        44433   345789999998873       33333322 335566    789999865 5


Q ss_pred             cc
Q 047728          472 KR  473 (474)
Q Consensus       472 ~~  473 (474)
                      +.
T Consensus       261 a~  262 (301)
T d1l0qa2         261 AL  262 (301)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=2.3e-18  Score=164.75  Aligned_cols=271  Identities=11%  Similarity=-0.006  Sum_probs=185.6

Q ss_pred             EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728          160 KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS  239 (474)
Q Consensus       160 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  239 (474)
                      ++++.+.||+|+|||+.+++.+....                                .| ..+..++|+|||++|++++
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~--------------------------------~g-~~~~~vafSPDGk~l~~~~   80 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVID--------------------------------TG-YAVHISRMSASGRYLLVIG   80 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEE--------------------------------CC-SSEEEEEECTTSCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe--------------------------------CC-CCeeEEEECCCCCEEEEEe
Confidence            56788899999999999987654332                                23 4588999999999999999


Q ss_pred             CCCcEEEEEcCCcceeeee-----eecCcceeEEEecCCC-e-EEEeeCCCcEEEEEcccCCCceeeee-----eeeeec
Q 047728          240 WDKTFKVWRTSDYKCLESV-----IAHDDAVNSIVAGFDG-L-VFTGSADGTVKVWRRELQGKGTKHFF-----SQTLLK  307 (474)
Q Consensus       240 ~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~v~~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~  307 (474)
                      .|++|++||+.+++.....     ..|...+.+++|+||| + ++++..++.+++||............     ......
T Consensus        81 ~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  160 (426)
T d1hzua2          81 RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  160 (426)
T ss_dssp             TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec
Confidence            9999999999988754432     2566667778889999 4 45666899999999876543111110     011122


Q ss_pred             ccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeeeecce--eeEEEEecCCEEEEEe-CCCcEEEEECCCCc
Q 047728          308 QECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLRGHKL--AILCLVTAGNLVFSGS-ADMSICIWRRKENE  383 (474)
Q Consensus       308 ~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~  383 (474)
                      .......+.+++++..++.... .+.+.+++............++..  .-..+++++++++++. .+..+.+++..+++
T Consensus       161 ~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         161 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence            3445667778888777665544 456666666554433323333333  3366677888877776 55678999999988


Q ss_pred             eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCC
Q 047728          384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF  463 (474)
Q Consensus       384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~  463 (474)
                      .........+..+...+.+...+..     ....++.+.|+.+.+|+................+.+|...+..+    +|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v----~~  311 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYG-----PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI----KT  311 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTE-----EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE----EC
T ss_pred             EEEEeccCCcccccceeeeecCCCC-----ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE----Ec
Confidence            6545554445555555666555431     11445667799999999877654444445667788999989888    78


Q ss_pred             CcCCceeec
Q 047728          464 SSQGRICQK  472 (474)
Q Consensus       464 s~Dg~~l~~  472 (474)
                      +|||+.|+.
T Consensus       312 sPdg~~l~v  320 (426)
T d1hzua2         312 HPKSSHLYV  320 (426)
T ss_dssp             CTTCSEEEE
T ss_pred             CCCCceEEE
Confidence            889988873

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=6e-20  Score=169.98  Aligned_cols=273  Identities=12%  Similarity=0.071  Sum_probs=181.7

Q ss_pred             EEEcCCEEEEeeCCCcEEEEeCC--ccccccc-cCccCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFK-SNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~-~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      ++.++++|++++.+++|.|||..  +.+..++ .|...+.+++|+  ++++ +++..++.|++||+.+++..........
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~   83 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   83 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence            34568899999999999999965  4455555 356667899997  5565 5666899999999998876543322211


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------------CCCcEEEEEcCCcceeee
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------------WDKTFKVWRTSDYKCLES  257 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~  257 (474)
                      .                          ..+...+..++|+|||+++++++            .++.+.+||..+++....
T Consensus        84 ~--------------------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  137 (346)
T d1jmxb_          84 P--------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP  137 (346)
T ss_dssp             T--------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred             c--------------------------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeE
Confidence            0                          11334566899999999998775            477899999988877665


Q ss_pred             eeec--CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC----------------
Q 047728          258 VIAH--DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP----------------  319 (474)
Q Consensus       258 ~~~~--~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----------------  319 (474)
                      +..+  ...+..+.+.+++.+++.+  +.+.+|++......      .... .......+.++|                
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (346)
T d1jmxb_         138 VRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYT------VALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFS  208 (346)
T ss_dssp             SEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEE------EEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             EEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEE------EEEe-cCCCccceEEeccccEEEEEecCCCceE
Confidence            5443  3456777788888555543  56888987644321      1111 111112222222                


Q ss_pred             ----------CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728          320 ----------DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICL  387 (474)
Q Consensus       320 ----------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~  387 (474)
                                ....++++..+..+.+||..+..........+...+..  .++++.+++... ++.|.+||..+++.  +
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~--~  285 (346)
T d1jmxb_         209 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKL--I  285 (346)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEE--E
T ss_pred             eeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcE--E
Confidence                      23333444455667888887776655555566555543  445666666655 46799999998874  3


Q ss_pred             EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       388 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ..+. +...+.+++|+||++        +|++++.|+.|+|||+.+.+
T Consensus       286 ~~~~-~~~~~~~va~s~DG~--------~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         286 KAAN-LDHTYYCVAFDKKGD--------KLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             EEEE-CSSCCCEEEECSSSS--------CEEEESBSSEEEEEETTTTE
T ss_pred             EEEc-CCCCEEEEEEcCCCC--------EEEEEeCCCcEEEEECccCC
Confidence            3333 445799999999999        89999999999999998873

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.4e-19  Score=165.19  Aligned_cols=253  Identities=9%  Similarity=0.005  Sum_probs=172.7

Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-E
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-S  237 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s  237 (474)
                      +++++++.|++|+|||+.+.+.........                              +...+.+++|+|||++++ +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~------------------------------~~~~~~~i~~spDg~~l~v~   51 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIAD------------------------------AGPTPMVPMVAPGGRIAYAT   51 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTT------------------------------CTTCCCCEEECTTSSEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCC------------------------------CCCCccEEEECCCCCEEEEE
Confidence            589999999999999999887654333221                              345678999999999875 5


Q ss_pred             EECCCcEEEEEcCCcceeeeeeecC-----cceeEEEecCCC-eEEEee------------CCCcEEEEEcccCCCceee
Q 047728          238 ASWDKTFKVWRTSDYKCLESVIAHD-----DAVNSIVAGFDG-LVFTGS------------ADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       238 ~s~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~-~l~~~~------------~dg~i~iwd~~~~~~~~~~  299 (474)
                      ++.++.|.+||+.+++.+..+..+.     ..+..++++|++ .++++.            .+..+.+||......    
T Consensus        52 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----  127 (337)
T d1pbyb_          52 VNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----  127 (337)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----
T ss_pred             ECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE----
Confidence            6688999999999999988886543     345688999999 666554            356788888765432    


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--------------------
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--------------------  359 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--------------------  359 (474)
                         .........+..++|+|+++++++++.+  +.+||..+.................+.                    
T Consensus       128 ---~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (337)
T d1pbyb_         128 ---RKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF  202 (337)
T ss_dssp             ---EEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEE
T ss_pred             ---EEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeee
Confidence               2222344567889999999999998754  678887765433222111000000000                    


Q ss_pred             ----ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          360 ----TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       360 ----~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                          ++...+..+..++.+.+||..++... ...+..+...+..+++++++.        +++.+  ++.|++||+.+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~i~v~d~~~~~  271 (337)
T d1pbyb_         203 YTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKT--------RAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             EEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSS--------EEEEE--ESEEEEEETTTTE
T ss_pred             eeeeeccceeeecccCccEEEEEcCCCcEE-EEEecCCCcceEEEEecccce--------EEEEc--cccEEEEECCCCc
Confidence                11222233344567999999888754 344556778889999999988        66665  5899999998873


Q ss_pred             CCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          436 PPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                             ....+ .+...+.++    +|||||+.|..+
T Consensus       272 -------~~~~~-~~~~~~~~~----~~s~dG~~l~v~  297 (337)
T d1pbyb_         272 -------SIKRV-PLPHSYYSV----NVSTDGSTVWLG  297 (337)
T ss_dssp             -------EEEEE-ECSSCCCEE----EECTTSCEEEEE
T ss_pred             -------EEEEE-cCCCCEEEE----EECCCCCEEEEE
Confidence                   22333 234456666    889999987654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.4e-17  Score=149.77  Aligned_cols=275  Identities=12%  Similarity=0.219  Sum_probs=183.1

Q ss_pred             EEEEeeCCCcEEEEeCCc--ccccc--ccCccCEEEEEec--CCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccce
Q 047728          122 LLYTGSDSKNIRVWKNQR--EFSGF--KSNSGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       122 ~l~tgs~dg~v~vwd~~~--~~~~~--~~h~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      .+++++.|++|+||++..  .+..+  ..|.+.+..|+|+  +++|++++ .|+.|++|+++...........       
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~-------   78 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-------   78 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-------
Confidence            457788999999998542  23333  3688899999998  56775554 5899999999876543221110       


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcCCcceeee--eeecCcceeEEEec
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTSDYKCLES--VIAHDDAVNSIVAG  271 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~  271 (474)
                                            ..+...+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++
T Consensus        79 ----------------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  136 (333)
T d1ri6a_          79 ----------------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS  136 (333)
T ss_dssp             ----------------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC
T ss_pred             ----------------------cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee
Confidence                                  114456778999999999999885 67899998876654433  33466778899999


Q ss_pred             CCC-eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceee
Q 047728          272 FDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVL  348 (474)
Q Consensus       272 ~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~  348 (474)
                      +++ .++++ ..+..|.+|+.........................++|++++..++... ..+...+|+...........
T Consensus       137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  216 (333)
T d1ri6a_         137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  216 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee
Confidence            999 44444 4566799999876554333333333444556678999999998877654 55667777754432211111


Q ss_pred             e-----------ecceeeEEEEecCCEEEEE-eCCCcEEEEECCCCce-EEEEeecCCccceEEEEEeeCCccccccceE
Q 047728          349 R-----------GHKLAILCLVTAGNLVFSG-SADMSICIWRRKENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRW  415 (474)
Q Consensus       349 ~-----------~~~~~v~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  415 (474)
                      .           ........+++++++++.. ..++.+.+|++..... ............+.+++|+||++        
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk--------  288 (333)
T d1ri6a_         217 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK--------  288 (333)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS--------
T ss_pred             eeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCC--------
Confidence            0           1112335678888876655 4678999999865432 12222333445678999999999        


Q ss_pred             EEEE-ecCCCcEEEEEccC
Q 047728          416 ILYS-GSLDKSVKMWRVSE  433 (474)
Q Consensus       416 ~l~s-~s~Dg~i~vw~~~~  433 (474)
                      +|++ +..++.|++|++..
T Consensus       289 ~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         289 YLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEECTTTCEEEEEEEET
T ss_pred             EEEEEECCCCeEEEEEEEC
Confidence            5554 55678999997754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=7.7e-17  Score=149.66  Aligned_cols=299  Identities=11%  Similarity=0.045  Sum_probs=186.4

Q ss_pred             EEEEcCCEEEEe-----eCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEE----------eCCCeEEEEec
Q 047728          115 SLAAAGDLLYTG-----SDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSG----------HQDGKIRVWKV  175 (474)
Q Consensus       115 ~~~~~~~~l~tg-----s~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~----------~~dg~i~vwd~  175 (474)
                      +.+|+++.++..     ..++.|.+||..  +.+..+..+...  .++|+  +++|+++          ..|+.|++||.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            446778877654     345679999954  445555544444  57776  6666654          45789999999


Q ss_pred             CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcc
Q 047728          176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYK  253 (474)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~  253 (474)
                      .+++............                         .........++|++++++++.+.  .+..+.+||..+++
T Consensus        86 ~t~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~  140 (355)
T d2bbkh_          86 VTLLPTADIELPDAPR-------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  140 (355)
T ss_dssp             TTCCEEEEEEETTCCC-------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CCCCEEEEEecCCcce-------------------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc
Confidence            9987654333221110                         01223345689999999988775  45789999999999


Q ss_pred             eeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728          254 CLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV  333 (474)
Q Consensus       254 ~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  333 (474)
                      .+..+..+.....  ........++.+.|+...++...................+...+....+.+++..++.++.++.+
T Consensus       141 ~~~~~~~~~~~~~--~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (355)
T d2bbkh_         141 FKRMLDVPDCYHI--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI  218 (355)
T ss_dssp             EEEEEECCSEEEE--EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred             EeeEEecCCcceE--eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeE
Confidence            8887765432211  11111133333444444444333222111111111122233345556788888889999999999


Q ss_pred             EEeecCcccccc-eee------------eecceeeEEEEecCCEEEEEeCC----------CcEEEEECCCCceEEEEee
Q 047728          334 NFWERELNLSHG-GVL------------RGHKLAILCLVTAGNLVFSGSAD----------MSICIWRRKENEHICLSML  390 (474)
Q Consensus       334 ~v~d~~~~~~~~-~~~------------~~~~~~v~~~~~~~~~l~sgs~d----------g~i~iwd~~~~~~~~~~~~  390 (474)
                      ++|++..+.... ...            .......+.+++++..++....+          ..|.+||..+++.  +..+
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~--~~~~  296 (355)
T d2bbkh_         219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKF  296 (355)
T ss_dssp             EEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEE
T ss_pred             EEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE--EEEe
Confidence            999987664321 111            11223347788888888776543          3699999998874  3444


Q ss_pred             cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728          391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP  458 (474)
Q Consensus       391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  458 (474)
                      . +...+.+++|+||++..      ++++++.|+.|+|||+.++       +....+.++......+.
T Consensus       297 ~-~~~~~~~~a~spDG~~~------l~v~~~~d~~i~v~D~~tg-------~~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         297 E-MGHEIDSINVSQDEKPL------LYALSTGDKTLYIHDAESG-------EELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             E-EEEEECEEEECCSSSCE------EEEEETTTTEEEEEETTTC-------CEEEEECCCCSSCCEEE
T ss_pred             c-CCCCEEEEEEcCCCCeE------EEEEECCCCEEEEEECCCC-------CEEEEEeCcCCCccEEE
Confidence            3 34568899999998732      5677888999999999988       45566766666666663

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=2.8e-15  Score=140.08  Aligned_cols=308  Identities=9%  Similarity=-0.012  Sum_probs=191.9

Q ss_pred             ecCcEEEE--EEcCCEEEEe-----eCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEe----------CC
Q 047728          109 EEGHIYSL--AAAGDLLYTG-----SDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGH----------QD  167 (474)
Q Consensus       109 h~~~i~~~--~~~~~~l~tg-----s~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~d  167 (474)
                      +.+++.++  +|+|+.++..     +.++.|.+||  ..+.+..+..+...  .++|+  +++|+++.          .+
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccc
Confidence            44444444  4557766553     2345678887  33555555555444  45565  66777654          45


Q ss_pred             CeEEEEecCCCCcceeeeeccc---------------CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728          168 GKIRVWKVSSKDASIHKRVGTL---------------PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ  232 (474)
Q Consensus       168 g~i~vwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  232 (474)
                      +.|.+||..+++..........               +..+.+......+.....+..........+.....++.++|++
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  176 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGA  176 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCC
Confidence            7789999888776543322111               1111111122223333333333344445666778899999988


Q ss_pred             CEE-EEEECCCcEEEEEcCCcceeeeeeecC------cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728          233 NLL-YSASWDKTFKVWRTSDYKCLESVIAHD------DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTL  305 (474)
Q Consensus       233 ~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (474)
                      +.+ ++.+.|+.+.+||...++.......+.      .....+.+.+++.++..+.++.+.+|+......    ......
T Consensus       177 ~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~  252 (373)
T d2madh_         177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKAPI  252 (373)
T ss_pred             CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE----EEEEee
Confidence            655 678899999999999888776654322      223345566666777888899999999775332    112222


Q ss_pred             ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728          306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       306 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      ...........+.|.....++.+.|+...+                     .....+..+++...++.+.+||..+++. 
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~-  310 (373)
T d2madh_         253 DALSGGRKADTWRPGGWQQVAYLKSSDGIY---------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQT-  310 (373)
T ss_pred             ccccCcEEeeeeccCcceeeEEecCCCeEE---------------------EecCCCceEEeecCCCeEEEEECCCCcE-
Confidence            333344455555555555555555543222                     2233456777888889999999999874 


Q ss_pred             EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728          386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY  459 (474)
Q Consensus       386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  459 (474)
                       +..+ .+...+.+++|+||++..      ++++++.|+.|+|||+.++       +..+.+..+...++.|++
T Consensus       311 -~~~~-~~~~~~~~~a~spDG~~~------l~vt~~~d~~v~v~D~~tg-------~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         311 -SSQI-SLGHDVDAISVAQDGGPD------LYALSAGTEVLHIYDAGAG-------DQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             -EEEe-cCCCCeeEEEECCCCCEE------EEEEeCCCCeEEEEECCCC-------CEEEEECCCCCCCcEEEE
Confidence             3344 366779999999998732      4578999999999999998       566777777777777754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.5e-17  Score=153.47  Aligned_cols=256  Identities=8%  Similarity=-0.051  Sum_probs=167.8

Q ss_pred             CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728          158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS  237 (474)
Q Consensus       158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  237 (474)
                      +++|++++.|++|.+||+.+++......+                               .|...+.+++|+|||+++++
T Consensus         8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-------------------------------~~~~~p~~l~~spDG~~l~v   56 (346)
T d1jmxb_           8 HEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------PDKFGPGTAMMAPDNRTAYV   56 (346)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEEC-------------------------------SSCCSSCEEEECTTSSEEEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCCEEEEEEc-------------------------------CCCCCcceEEECCCCCEEEE
Confidence            67999999999999999999866533322                               14556789999999998754


Q ss_pred             -EECCCcEEEEEcCCcceeeeeeecC------cceeEEEecCCC-eEEEee------------CCCcEEEEEcccCCCce
Q 047728          238 -ASWDKTFKVWRTSDYKCLESVIAHD------DAVNSIVAGFDG-LVFTGS------------ADGTVKVWRRELQGKGT  297 (474)
Q Consensus       238 -~s~dg~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~~~-~l~~~~------------~dg~i~iwd~~~~~~~~  297 (474)
                       +..++.|++||+.+++.+..+....      ..+..++++||| .+++++            .++.+.+||........
T Consensus        57 ~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  136 (346)
T d1jmxb_          57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK  136 (346)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred             EECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence             4578999999999999887765432      346788999999 555554            46778889877543211


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE------------------
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV------------------  359 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~------------------  359 (474)
                          ..........+..+.+++++.+++.+   +.+.+|+..+.................++                  
T Consensus       137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (346)
T d1jmxb_         137 ----PVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  209 (346)
T ss_dssp             ----CSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ----EEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEe
Confidence                11112223445566777777766543   45888887765443222111100001111                  


Q ss_pred             --------ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          360 --------TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       360 --------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                              .....++++..+..+.+||..++... ......|...+..+.+++++.        +++... ++.|++||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~v~v~d~  279 (346)
T d1jmxb_         210 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDP--------NQIYGV-LNRLAKYDL  279 (346)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCT--------TEEEEE-ESEEEEEET
T ss_pred             eeeeeeeccCceeEeeccCCceEEEEECCCCceE-EEEeecccceeEEEEEeCCCC--------EEEEec-CCeEEEEEC
Confidence                    12334555666778999999887754 345566788899999999987        565554 457999999


Q ss_pred             cCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728          432 SEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR  473 (474)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~  473 (474)
                      .+++       ....+. +...+.++    +|||||+.+..+
T Consensus       280 ~~~~-------~~~~~~-~~~~~~~v----a~s~DG~~l~v~  309 (346)
T d1jmxb_         280 KQRK-------LIKAAN-LDHTYYCV----AFDKKGDKLYLG  309 (346)
T ss_dssp             TTTE-------EEEEEE-CSSCCCEE----EECSSSSCEEEE
T ss_pred             CCCc-------EEEEEc-CCCCEEEE----EEcCCCCEEEEE
Confidence            8873       222232 23456666    889999988764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.7e-16  Score=142.15  Aligned_cols=263  Identities=14%  Similarity=0.204  Sum_probs=171.9

Q ss_pred             EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728          160 KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS  239 (474)
Q Consensus       160 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  239 (474)
                      .+++++.|++|++|+++........+                              ...|.+.+..|+|+|||++|++++
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~------------------------------~~~~~~~v~~la~spDG~~L~v~~   55 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQ------------------------------VVDVPGQVQPMVVSPDKRYLYVGV   55 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEE------------------------------EEECSSCCCCEEECTTSSEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEE------------------------------EEcCCCCEeEEEEeCCCCEEEEEE
Confidence            35778899999999998654332211                              123778899999999999996665


Q ss_pred             -CCCcEEEEEcCCcceeeeee---ecCcceeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728          240 -WDKTFKVWRTSDYKCLESVI---AHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT  313 (474)
Q Consensus       240 -~dg~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  313 (474)
                       .|+.|++|++........+.   .+...+..++|+||| .|++++ .++.|.+|+......    ........+...+.
T Consensus        56 ~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~  131 (333)
T d1ri6a_          56 RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCH  131 (333)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBC
T ss_pred             CCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc----eecccccCCCccce
Confidence             58999999998665443332   344567889999999 666666 477899998764322    12333445666788


Q ss_pred             EEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeee-------ecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCce
Q 047728          314 ALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLR-------GHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEH  384 (474)
Q Consensus       314 ~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~  384 (474)
                      ++.++|+++++++++. +..|.+|+............       +.....+.+++++.+++... ..+...+|+......
T Consensus       132 ~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  211 (333)
T d1ri6a_         132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  211 (333)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             EEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc
Confidence            9999999998887764 45689998766533322111       12223466677777776554 566788888754321


Q ss_pred             --EEEEeec------CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728          385 --ICLSMLT------GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS  456 (474)
Q Consensus       385 --~~~~~~~------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  456 (474)
                        .......      ........++++++++.       +++++..++.+.+|++.......    ...........+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~  280 (333)
T d1ri6a_         212 NIECVQTLDMMPENFSDTRWAADIHITPDGRH-------LYACDRTASLITVFSVSEDGSVL----SKEGFQPTETQPRG  280 (333)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTSCCE----EEEEEEECSSSCCC
T ss_pred             ceeeeeeeeeeecCCCccccceeEEEecccCc-------eeeecccCCeEEEEEEcCCCCEE----EEEEEeCCCCCeeE
Confidence              1111211      12345677889999873       56667788899999997653321    11111223344556


Q ss_pred             cccCCCCCcCCceee
Q 047728          457 LPYAPSFSSQGRICQ  471 (474)
Q Consensus       457 l~~~p~~s~Dg~~l~  471 (474)
                      +    +|||||+.|.
T Consensus       281 ~----a~spDGk~l~  291 (333)
T d1ri6a_         281 F----NVDHSGKYLI  291 (333)
T ss_dssp             E----EECTTSSEEE
T ss_pred             E----EEeCCCCEEE
Confidence            6    7899999754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=2.8e-13  Score=126.16  Aligned_cols=269  Identities=11%  Similarity=0.004  Sum_probs=168.1

Q ss_pred             ccCccCEEEEEec--CCEEEEE-----eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728          145 KSNSGLVKAIVIS--NEKIFSG-----HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI  217 (474)
Q Consensus       145 ~~h~~~V~~i~~~--~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (474)
                      ..+.+++..++++  +.+++..     +.++.|.+||..+++.......                               
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-------------------------------   65 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-------------------------------   65 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-------------------------------
Confidence            3567778888887  5666553     2345789999888875532211                               


Q ss_pred             eccCCeeEEEecCCCCEEEEEE----------CCCcEEEEEcCCcceeeeeeecCcce-------eEEEecCCC-eE--E
Q 047728          218 KHFDAISSLSMSEDQNLLYSAS----------WDKTFKVWRTSDYKCLESVIAHDDAV-------NSIVAGFDG-LV--F  277 (474)
Q Consensus       218 ~h~~~V~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v-------~~v~~~~~~-~l--~  277 (474)
                       +.  ...++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.+++++ .+  .
T Consensus        66 -~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~  142 (373)
T d2madh_          66 -GF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF  142 (373)
T ss_pred             -CC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEE
Confidence             22  23689999999999875          45789999999999988887665544       345667776 22  3


Q ss_pred             EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE-EEEcCCCcEEEeecCcccccceeee-----ec
Q 047728          278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV-YCGSSDGLVNFWERELNLSHGGVLR-----GH  351 (474)
Q Consensus       278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~-----~~  351 (474)
                      ....++.+.+|+.....          ...+.....++.++|+++.+ ++.+.|+.+.+|+............     ..
T Consensus       143 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  212 (373)
T d2madh_         143 QFAAGPAVGLVVQGGSS----------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ  212 (373)
T ss_pred             EEcCCCceEEeeccCCe----------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence            33445677777765322          22333446788999988754 6788999999999887654432221     11


Q ss_pred             ceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc----------eEEEEEeeCCcccc--ccceEEEE
Q 047728          352 KLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP----------VKCLAVEKDDESLS--REKRWILY  418 (474)
Q Consensus       352 ~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~~~--~~~~~~l~  418 (474)
                      ......+.++ +..++..+.++.+.+|+..............+...          ...+++++++....  ......++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (373)
T d2madh_         213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             cceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence            1122223332 34555667789999999988765444444433332          33455555554210  11112455


Q ss_pred             EecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCce
Q 047728          419 SGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRI  469 (474)
Q Consensus       419 s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~  469 (474)
                      +...++.|.+||+.+++.       ...+. +...+..+    +|||||+.
T Consensus       293 ~~~~~~~v~~~d~~t~~~-------~~~~~-~~~~~~~~----a~spDG~~  331 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQT-------SSQIS-LGHDVDAI----SVAQDGGP  331 (373)
T ss_pred             eecCCCeEEEEECCCCcE-------EEEec-CCCCeeEE----EECCCCCE
Confidence            667778899999988743       22222 33445555    88999983

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=2.4e-13  Score=126.64  Aligned_cols=270  Identities=6%  Similarity=-0.061  Sum_probs=168.0

Q ss_pred             eeCCCc--EEEEeC--CccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCCCcceeeeeccc
Q 047728          126 GSDSKN--IRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       126 gs~dg~--v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      ...+|.  |.+||.  .+.+.....+....  ++++  ++.|++.+          .|+.|++||..+.+..........
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~--~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEECTTCE--EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCCCCCc--ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            445555  444463  34445555555543  4555  66676654          477899999998876544332211


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEE
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSI  268 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  268 (474)
                      ..                         .........++|+|||++|+++. .++.+.+||+.+++.+..+..+.....  
T Consensus       118 ~~-------------------------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--  170 (368)
T d1mdah_         118 PR-------------------------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--  170 (368)
T ss_dssp             CS-------------------------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--
T ss_pred             ce-------------------------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--
Confidence            00                         00122234689999999998876 579999999999999888876554321  


Q ss_pred             EecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc---
Q 047728          269 VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG---  345 (474)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---  345 (474)
                      .......++..+.||.+.+|++.................+...+....+.+++..+...  .+.+.+++........   
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECC
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEee
Confidence            11222377778889999999877655433222223333444455566777777666543  3445555543322110   


Q ss_pred             ----------eeeeecceeeEEEEecCCEEEEEeCC---------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728          346 ----------GVLRGHKLAILCLVTAGNLVFSGSAD---------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD  406 (474)
Q Consensus       346 ----------~~~~~~~~~v~~~~~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~  406 (474)
                                ..........+.+++++..++....+         ..|.+||..+++.  +..+. +...+.+++|+||+
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~~~-~~~~~~~~a~spDG  325 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPIS-NGHDSDAIIAAQDG  325 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCE-EEEEECEEEECCSS
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE--eEEec-CCCceeEEEECCCC
Confidence                      01122233457888888877665432         3589999998873  44444 34678999999998


Q ss_pred             ccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          407 ESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      +..      +++++..|+.|++||..+++
T Consensus       326 ~~~------ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         326 ASD------NYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SCE------EEEEETTTTEEEEEESSSCE
T ss_pred             CEE------EEEEeCCCCeEEEEECCCCC
Confidence            632      46778889999999999883

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=7.6e-13  Score=122.15  Aligned_cols=275  Identities=9%  Similarity=0.001  Sum_probs=167.1

Q ss_pred             CcceeeeeeeeecCcEEEEEEcCCEEEEe----------eCCCcEEEEeCC--ccccccccCc-------cCEEEEEec-
Q 047728           98 SPNVLIGSLVREEGHIYSLAAAGDLLYTG----------SDSKNIRVWKNQ--REFSGFKSNS-------GLVKAIVIS-  157 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~~~~l~tg----------s~dg~v~vwd~~--~~~~~~~~h~-------~~V~~i~~~-  157 (474)
                      ...++++++..+...-.+++|+|++|++.          ..|+.|++||..  +....+..+.       .....++|+ 
T Consensus        36 ~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          36 EAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             TTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec
Confidence            34567777777776666778889987764          347899999954  2223222211       122345666 


Q ss_pred             -CCEEEEEe--CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE
Q 047728          158 -NEKIFSGH--QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL  234 (474)
Q Consensus       158 -~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  234 (474)
                       +++++.+.  .+..+.+|+..+++..........                         ....-......+.+++++..
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~dg~~  170 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-------------------------YHIFPTAPDTFFMHCRDGSL  170 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-------------------------EEEEEEETTEEEEEETTSCE
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc-------------------------ceEeecCCcceEEEcCCCCE
Confidence             56666554  567899999988765433221110                         00001123345566777666


Q ss_pred             EEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeee------ee
Q 047728          235 LYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT------LL  306 (474)
Q Consensus       235 l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~  306 (474)
                      ++... .++.+.+++......     .+...+....+.+++ .++.++.++.+.+|++..............      ..
T Consensus       171 ~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (355)
T d2bbkh_         171 AKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  245 (355)
T ss_dssp             EEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             EEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeee
Confidence            65443 345555555544332     223334445556555 888889999999999875542111000000      00


Q ss_pred             cccccEEEEEEcCCCCEEEEEcCC----------CcEEEeecCcccccceeeeecceeeEEEEecCC--EEEEEeCCCcE
Q 047728          307 KQECAVTALAISPDAAIVYCGSSD----------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGN--LVFSGSADMSI  374 (474)
Q Consensus       307 ~~~~~v~~l~~~~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sgs~dg~i  374 (474)
                      ........+++++++..++....+          ..|.+||..+.+....+..++....+.++++|+  +++++..|+.|
T Consensus       246 ~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i  325 (355)
T d2bbkh_         246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL  325 (355)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEE
Confidence            011233458899999988876543          369999999887766665566666788899987  45677789999


Q ss_pred             EEEECCCCceEEEEeecCCccceEEEEEee
Q 047728          375 CIWRRKENEHICLSMLTGHSGPVKCLAVEK  404 (474)
Q Consensus       375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~  404 (474)
                      ++||.++++  .+..+.++...-..+.+.+
T Consensus       326 ~v~D~~tg~--~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         326 YIHDAESGE--ELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             EEEETTTCC--EEEEECCCCSSCCEEECCC
T ss_pred             EEEECCCCC--EEEEEeCcCCCccEEEeCC
Confidence            999999998  4566766655455554443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.53  E-value=1.9e-13  Score=127.12  Aligned_cols=236  Identities=9%  Similarity=-0.016  Sum_probs=145.7

Q ss_pred             ccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC--eEEEeeCCCcE---------
Q 047728          219 HFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG--LVFTGSADGTV---------  285 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~--~l~~~~~dg~i---------  285 (474)
                      |..........|||++|++.. .+.+|.++|+.++++...+.. +...+..++++|++  ..+++..+..+         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            555566666789999997665 778999999999998877653 46778999999998  23433333333         


Q ss_pred             ---------EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-------------------------
Q 047728          286 ---------KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-------------------------  331 (474)
Q Consensus       286 ---------~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------------------------  331 (474)
                               ..+|..+...      .... .-......+.++|+|+++++.+.+.                         
T Consensus       150 ~~~~~~~~~~~iD~~t~~v------~~qI-~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDV------AWQV-IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSE------EEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             ccccccceEEeecCcccee------eEEE-ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                     3345443221      1111 1123567899999999988876542                         


Q ss_pred             ----------------cEEEeecCcccccceeeeecceeeEEEEecCCEEE-EEeCCCcEEEEECCCCceE---------
Q 047728          332 ----------------LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVF-SGSADMSICIWRRKENEHI---------  385 (474)
Q Consensus       332 ----------------~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~~---------  385 (474)
                                      .+.+++.........+..+....-+.++|||++++ ++..+++|.+||+.+.+..         
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence                            12222222222221222222233478899999875 5668999999998653210         


Q ss_pred             EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC------CC--CCCCCcccccccCCCCCCCcc
Q 047728          386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ------AP--PLVSTTQQHPLEGHGVAPNSL  457 (474)
Q Consensus       386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~------~~--~~~~~~~~~~~~~~~~~v~~l  457 (474)
                      ++.......-.....+|.+++.        .+.+...|..|..|++...      ..  +.......+...||...+.+.
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~--------~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~  374 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGN--------AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE  374 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSE--------EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT
T ss_pred             EEEeecccccCcccceecCCce--------EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccccc
Confidence            0000011111234457888887        7889999999999998531      11  111112233346787777766


Q ss_pred             ccCCCCCcCCceeecc
Q 047728          458 PYAPSFSSQGRICQKR  473 (474)
Q Consensus       458 ~~~p~~s~Dg~~l~~~  473 (474)
                          +|+|||++|++.
T Consensus       375 ----t~~pdGk~l~s~  386 (441)
T d1qnia2         375 ----SRDADGKWLVVL  386 (441)
T ss_dssp             ----STTCCCCEEEEE
T ss_pred             ----ccCCCCcEEEec
Confidence                999999999986

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=3.4e-11  Score=115.72  Aligned_cols=135  Identities=13%  Similarity=0.087  Sum_probs=93.9

Q ss_pred             cCCEEEEeeCCCcEEEEeCCc--cc-----cccccCccCEEEEEec--CCEEEEEeC---------CCeEEEEecCCCCc
Q 047728          119 AGDLLYTGSDSKNIRVWKNQR--EF-----SGFKSNSGLVKAIVIS--NEKIFSGHQ---------DGKIRVWKVSSKDA  180 (474)
Q Consensus       119 ~~~~l~tgs~dg~v~vwd~~~--~~-----~~~~~h~~~V~~i~~~--~~~l~s~~~---------dg~i~vwd~~~~~~  180 (474)
                      ++++++.  .|+.+.+||...  ..     ..+..|...|.++.|+  +++|+.++.         ++.+.+||+.+++.
T Consensus        27 d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~  104 (470)
T d2bgra1          27 DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (470)
T ss_dssp             SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc
Confidence            4556654  467899999542  22     2455677889999998  668887743         56788999998754


Q ss_pred             ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728          181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA  260 (474)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  260 (474)
                      ..                                 +..+...+..+.|+|||+.||... ++.+.+|+..+++.......
T Consensus       105 ~~---------------------------------l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1         105 IT---------------------------------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             CC---------------------------------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSC
T ss_pred             cc---------------------------------cccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeec
Confidence            21                                 233778899999999999999864 67899999988876554322


Q ss_pred             ------------------cCcceeEEEecCCC-eEEEeeCCCc-EEEEE
Q 047728          261 ------------------HDDAVNSIVAGFDG-LVFTGSADGT-VKVWR  289 (474)
Q Consensus       261 ------------------~~~~v~~v~~~~~~-~l~~~~~dg~-i~iwd  289 (474)
                                        ..+....+.|+||| .|+....|.. +..|.
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence                              12334668899999 6666654433 54444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.25  E-value=5.9e-11  Score=110.21  Aligned_cols=227  Identities=14%  Similarity=0.132  Sum_probs=140.8

Q ss_pred             ecCCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE
Q 047728          156 ISNEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL  234 (474)
Q Consensus       156 ~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  234 (474)
                      .+|++|++. ..++.|.++|+++.+......+.                               +...+..++|+|+++.
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP-------------------------------~g~gphgi~~spdg~t  129 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIP-------------------------------NVQAIHGLRLQKVPKT  129 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECT-------------------------------TCCCEEEEEECCSSBC
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC-------------------------------CCCCccceEEeccCCE
Confidence            347777555 57889999999988654332221                               4567889999998874


Q ss_pred             --EEEEECCC-----------------cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC-----------
Q 047728          235 --LYSASWDK-----------------TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG-----------  283 (474)
Q Consensus       235 --l~s~s~dg-----------------~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg-----------  283 (474)
                        ++..+.+.                 .+..+|..+.+....+... ..+..+.++|+| ++++.+.+.           
T Consensus       130 ~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~  208 (441)
T d1qnia2         130 NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMR  208 (441)
T ss_dssp             CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred             EEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCc
Confidence              44444332                 2355888888887777654 457889999999 555555432           


Q ss_pred             ----cEEEEEccc-------------CCCce-------eeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeec
Q 047728          284 ----TVKVWRREL-------------QGKGT-------KHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWER  338 (474)
Q Consensus       284 ----~i~iwd~~~-------------~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~  338 (474)
                          .|.+.+...             .....       ........ .-......+.++|||+++++ +..+++|.+||+
T Consensus       209 ~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~I-PvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         209 NDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             SSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEE-CCBSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             ceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEE-eCCCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence                122222100             00000       00011112 22334577999999998755 677899999998


Q ss_pred             Ccccccc-------eeeeecc-----eeeEEEEecCCEEEEEeCCCcEEEEECCC---------CceEEEEee-----cC
Q 047728          339 ELNLSHG-------GVLRGHK-----LAILCLVTAGNLVFSGSADMSICIWRRKE---------NEHICLSML-----TG  392 (474)
Q Consensus       339 ~~~~~~~-------~~~~~~~-----~~v~~~~~~~~~l~sgs~dg~i~iwd~~~---------~~~~~~~~~-----~~  392 (474)
                      ++.....       ....++.     ..-..|..+|..+.+...|.+|..|++..         ... .+..+     .+
T Consensus       288 ~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~-v~~~~~v~y~~G  366 (441)
T d1qnia2         288 DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNY-IRQKLDVQYQPG  366 (441)
T ss_dssp             GGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCC-EEEEEECSSCEE
T ss_pred             ehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCce-eEeccccccCCC
Confidence            7543211       1111111     11245666788888888999999999741         111 12233     57


Q ss_pred             CccceEEEEEeeCCccccccceEEEEEe---cCCC
Q 047728          393 HSGPVKCLAVEKDDESLSREKRWILYSG---SLDK  424 (474)
Q Consensus       393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~---s~Dg  424 (474)
                      |...+.+.+++||++        +|+++   +.|.
T Consensus       367 H~~~~~~~t~~pdGk--------~l~s~~k~s~dr  393 (441)
T d1qnia2         367 HNHASLTESRDADGK--------WLVVLSKFSKDR  393 (441)
T ss_dssp             EEEETTTTSTTCCCC--------EEEEEESCCGGG
T ss_pred             CCccccccccCCCCc--------EEEecCcccccc
Confidence            888888899999999        99999   5554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=2.1e-10  Score=106.26  Aligned_cols=257  Identities=9%  Similarity=0.013  Sum_probs=149.2

Q ss_pred             CcceeeeeeeeecCcEEEEEEcCCEEEEee----------CCCcEEEEeCC--ccccccccCc-------cCEEEEEec-
Q 047728           98 SPNVLIGSLVREEGHIYSLAAAGDLLYTGS----------DSKNIRVWKNQ--REFSGFKSNS-------GLVKAIVIS-  157 (474)
Q Consensus        98 ~~~~~~~~l~~h~~~i~~~~~~~~~l~tgs----------~dg~v~vwd~~--~~~~~~~~h~-------~~V~~i~~~-  157 (474)
                      ....+++.+..+......++++|++|++.+          .|+.|++||..  +....+..+.       .....++|+ 
T Consensus        54 ~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp  133 (368)
T d1mdah_          54 GCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC
Confidence            345667777777777777888899888754          47789999954  3333332221       112245666 


Q ss_pred             -CCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE
Q 047728          158 -NEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL  235 (474)
Q Consensus       158 -~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  235 (474)
                       +++|+++. .++.+.+||+.+++...........                         ...+.          ....+
T Consensus       134 DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------------------~~~~~----------~~~~~  178 (368)
T d1mdah_         134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF-------------------------HIHPG----------AAATH  178 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC-------------------------CCEEE----------ETTEE
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc-------------------------eEccC----------CCceE
Confidence             67777665 6799999999988655433221100                         00011          22344


Q ss_pred             EEEECCCcEEEEEcCCcceeee------eeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee-----
Q 047728          236 YSASWDKTFKVWRTSDYKCLES------VIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT-----  304 (474)
Q Consensus       236 ~s~s~dg~i~iwd~~~~~~~~~------~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----  304 (474)
                      +..+.||.+.+|++........      +..+...+....+.+++.++. ...+.+.+++...............     
T Consensus       179 v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (368)
T d1mdah_         179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             EEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceee
Confidence            4555566666666544332221      122344455667777764332 2345566666553322110000000     


Q ss_pred             -eecccccEEEEEEcCCCCEEEEEcCC---------CcEEEeecCcccccceeeeecceeeEEEEecCC-E-EEEEeCCC
Q 047728          305 -LLKQECAVTALAISPDAAIVYCGSSD---------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-L-VFSGSADM  372 (474)
Q Consensus       305 -~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~-l~sgs~dg  372 (474)
                       ..........+++++++..+++...+         ..|.+||..+++....+..++....+.+++||+ + ++++..|+
T Consensus       258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~  337 (368)
T d1mdah_         258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTE  337 (368)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCC
Confidence             00011223457889988877765332         358899999887776665555556688999986 3 45667889


Q ss_pred             cEEEEECCCCceEEEEeecC
Q 047728          373 SICIWRRKENEHICLSMLTG  392 (474)
Q Consensus       373 ~i~iwd~~~~~~~~~~~~~~  392 (474)
                      .|++||..+++.  +..+..
T Consensus       338 ~v~v~D~~tgk~--~~~i~~  355 (368)
T d1mdah_         338 VLDIYDAASDQD--QSSVEL  355 (368)
T ss_dssp             EEEEEESSSCEE--EEECCC
T ss_pred             eEEEEECCCCCE--EEEEEC
Confidence            999999999984  455553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.04  E-value=2.7e-08  Score=88.97  Aligned_cols=229  Identities=10%  Similarity=0.040  Sum_probs=145.7

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .+..+++.|||+++++...+++|..||... + ...+......+.++++.+++ ++++...++.+..|+.........  
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~--  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE--  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE--
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee--
Confidence            477899999999999988899998888543 3 34455567789999999999 677777888888888764332111  


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee---------ecceeeEEEEecCCEE-EEEeC
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---------GHKLAILCLVTAGNLV-FSGSA  370 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~l-~sgs~  370 (474)
                       .............+++.++++++++.+.++.+..+|............         ........+.+++..+ ++.+.
T Consensus       105 -~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         105 -TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             -EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             -eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence             111223445688999999999999888888898888765532211111         1112234556665554 45557


Q ss_pred             CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728          371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH  450 (474)
Q Consensus       371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~  450 (474)
                      .+.|..++.....................++|.+++.        ++++...++.|..++.....      .........
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~--------l~va~~~~~~V~~i~p~G~~------~~~~~~~~~  249 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN--------LYGATHIYNSVVRIAPDRST------TIIAQAEQG  249 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC--------EEEECBTTCCEEEECTTCCE------EEEECGGGT
T ss_pred             CCeEEeccccccccccccccccCCCCCcceEECCCCC--------EEEEEcCCCcEEEECCCCCE------EEEEecCCC
Confidence            7888888876543211111111233467799999998        78887788888888654321      111112222


Q ss_pred             CCCCCccccCCCCCcCCcee
Q 047728          451 GVAPNSLPYAPSFSSQGRIC  470 (474)
Q Consensus       451 ~~~v~~l~~~p~~s~Dg~~l  470 (474)
                      -..+++++|.+. ++|++.|
T Consensus       250 ~~~pt~vafg~~-~~D~~~L  268 (302)
T d2p4oa1         250 VIGSTAVAFGQT-EGDCTAI  268 (302)
T ss_dssp             CTTEEEEEECCS-TTTTTEE
T ss_pred             CCCceEEEEcCC-CCCCCEE
Confidence            233566644322 6787755

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=3.8e-07  Score=79.49  Aligned_cols=218  Identities=11%  Similarity=0.076  Sum_probs=123.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCC---cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCcEEEEEcccC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDK---TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGTVKVWRRELQ  293 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~i~iwd~~~~  293 (474)
                      +...+..-+|+|||+.||-.....   .+.+.+...+.. ..+..+........|+|++ .+ +....++...++.....
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence            566788999999999998765443   466667665554 4455567788889999999 43 34444555444443322


Q ss_pred             CCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCc--EEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC
Q 047728          294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGL--VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                      ..     ................+++++..++. ...++.  |.+.++...................++++++.++..+.
T Consensus       116 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         116 SG-----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             TC-----CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             cc-----cceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence            22     12222233444555667776665444 445554  44555554432211111122233567788888877665


Q ss_pred             C-CcEEE--EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec--CCCcEEEEEccCCCCCCCCCcccc
Q 047728          371 D-MSICI--WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS--LDKSVKMWRVSEQAPPLVSTTQQH  445 (474)
Q Consensus       371 d-g~i~i--wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s--~Dg~i~vw~~~~~~~~~~~~~~~~  445 (474)
                      + +...+  .+...+..    ....+........|+|||+.       ++++..  ....|.++++..+..        .
T Consensus       191 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~~p~~SPDG~~-------i~f~s~~~~~~~l~~~~~dg~~~--------~  251 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGV----QVLSSTFLDETPSLAPNGTM-------VIYSSSQGMGSVLNLVSTDGRFK--------A  251 (269)
T ss_dssp             CSSCEEEEEEETTTCCE----EECCCSSSCEEEEECTTSSE-------EEEEEEETTEEEEEEEETTSCCE--------E
T ss_pred             cCCceeeeEeecccccc----eEeecCccccceEECCCCCE-------EEEEEcCCCCcEEEEEECCCCCE--------E
Confidence            4 44444  45444432    23335566778899999983       233332  234678888876522        2


Q ss_pred             cccCCCCCCCccccCC
Q 047728          446 PLEGHGVAPNSLPYAP  461 (474)
Q Consensus       446 ~~~~~~~~v~~l~~~p  461 (474)
                      .+....+.+...+|+|
T Consensus       252 ~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         252 RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ECCCSSSEEEEEEECC
T ss_pred             EEeCCCCcEEeEEeCC
Confidence            2333444455555555

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.02  E-value=3.1e-07  Score=82.18  Aligned_cols=198  Identities=10%  Similarity=0.063  Sum_probs=122.4

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecC----cceeEEEecCCCeEEEeeCCC--------------
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD----DAVNSIVAGFDGLVFTGSADG--------------  283 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~v~~v~~~~~~~l~~~~~dg--------------  283 (474)
                      .-..++|.++++.|+++.....|..+|..............    ...+.+++.++|.|..+...+              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            35689999999988888877789989976543322111111    135789999999444433211              


Q ss_pred             cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-----EEEEEcCCCcEEEeecCcccccce--ee---ee-cc
Q 047728          284 TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-----IVYCGSSDGLVNFWERELNLSHGG--VL---RG-HK  352 (474)
Q Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~l~~~~~dg~i~v~d~~~~~~~~~--~~---~~-~~  352 (474)
                      .=++|.+......      ......-.....++|+|++.     ++++-+..+.|..||+.....+..  ..   .. ..
T Consensus       152 ~G~v~~~~~dg~~------~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         152 FGSIYCFTTDGQM------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             CEEEEEECTTSCE------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             CceEEEEeecCce------eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence            1234433322221      11112223356789988764     445556788899998764422211  11   11 11


Q ss_pred             --eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728          353 --LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR  430 (474)
Q Consensus       353 --~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~  430 (474)
                        ..-+++..+|++.++....+.|.+||.+.++.  +..+.......++++|.++++.       ++++.+.+|.|...+
T Consensus       226 ~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~--~~~i~~p~~~~t~~afg~d~~~-------lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKT-------IFVTEHENNAVWKFE  296 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSE-------EEEEETTTTEEEEEE
T ss_pred             ccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE--EEEEECCCCCEEEEEEeCCCCE-------EEEEECCCCcEEEEE
Confidence              12366777899888888889999999887763  3344444567899999998863       667777888777777


Q ss_pred             ccCC
Q 047728          431 VSEQ  434 (474)
Q Consensus       431 ~~~~  434 (474)
                      +...
T Consensus       297 ~~~~  300 (314)
T d1pjxa_         297 WQRN  300 (314)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            6543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=3.6e-07  Score=81.41  Aligned_cols=224  Identities=9%  Similarity=0.035  Sum_probs=146.6

Q ss_pred             EEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCcc
Q 047728          115 SLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTF  192 (474)
Q Consensus       115 ~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  192 (474)
                      ++.++|+++++...+++|..|+.......+......+.++++.  ++.+++...++.+.+|+.............     
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~-----  108 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-----  108 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-----
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc-----
Confidence            3445699999999999999998776666677777889999998  667777778888888887665432211100     


Q ss_pred             ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee----------cC
Q 047728          193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA----------HD  262 (474)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~  262 (474)
                                              .........+++.++++++++-+.++.+..+|...+.....+..          ..
T Consensus       109 ------------------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1         109 ------------------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             ------------------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             ------------------------cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence                                    01334578899999998888888889999998877653322211          11


Q ss_pred             cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728          263 DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL  342 (474)
Q Consensus       263 ~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~  342 (474)
                      .....+.+..+..+++.+..+.|..++.........    ............++++++|+++++...++.|..++.....
T Consensus       165 ~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~  240 (302)
T d2p4oa1         165 PAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST  240 (302)
T ss_dssp             CSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCC----CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred             cccccccccCCceeeecCCCCeEEeccccccccccc----cccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE
Confidence            234566666554777888889998888765432211    1111223345679999999988888889999999876543


Q ss_pred             ccceeee-ec-ceeeEEE---EecCCEEEEEeCC
Q 047728          343 SHGGVLR-GH-KLAILCL---VTAGNLVFSGSAD  371 (474)
Q Consensus       343 ~~~~~~~-~~-~~~v~~~---~~~~~~l~sgs~d  371 (474)
                      ....... +. ....++|   .+|++.|+.++..
T Consensus       241 ~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         241 TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            2211111 11 1233455   3356777665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.00  E-value=6.1e-07  Score=82.16  Aligned_cols=163  Identities=12%  Similarity=0.111  Sum_probs=100.5

Q ss_pred             ceeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCc
Q 047728          264 AVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWEREL  340 (474)
Q Consensus       264 ~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~  340 (474)
                      .+.++.|+|+| ++++++ ....|.+|+.......... ............+.++|+|+++++++.. .++.|.+|+...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~-~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV-GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE-EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec-cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            46789999999 555554 3457888876543321111 1112223456789999999999886655 578899999865


Q ss_pred             ccccceeee--------------------ecceeeEEEEecCCEEEEEeC------CCcEEEEECCCCceE----EEEee
Q 047728          341 NLSHGGVLR--------------------GHKLAILCLVTAGNLVFSGSA------DMSICIWRRKENEHI----CLSML  390 (474)
Q Consensus       341 ~~~~~~~~~--------------------~~~~~v~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~----~~~~~  390 (474)
                      .........                    ......+.++|+|++|+++..      .+.|..|++......    .+...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            532211100                    011234678899999988752      234777877543211    11122


Q ss_pred             cCCccceEEEEEee-CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          391 TGHSGPVKCLAVEK-DDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       391 ~~h~~~v~~l~~~~-~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ........+++++| +++.       ++++...++.|.+|+++..
T Consensus       305 ~~~G~~p~~i~~~p~~G~~-------l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEW-------MAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTE-------EEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCCCCCE-------EEEEeCCCCeEEEEEEeCC
Confidence            22334567899998 6662       4555678899999998764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.00  E-value=4.3e-08  Score=93.49  Aligned_cols=304  Identities=7%  Similarity=0.015  Sum_probs=155.1

Q ss_pred             eeecCcEEEE--EEcCCEEEEeeC---------CCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728          107 VREEGHIYSL--AAAGDLLYTGSD---------SKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV  172 (474)
Q Consensus       107 ~~h~~~i~~~--~~~~~~l~tgs~---------dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v  172 (474)
                      ..|...|.++  +|+|++|+.++.         ++.+.|||.. +....+..|...+..+.|+  +++|+.. .++.+.+
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~  136 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYV  136 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEE
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceE
Confidence            3445566664  556999888753         5678899955 4566788889999999998  6677775 5678999


Q ss_pred             EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccce-eeeccCCeeEEEecCCCCEEEEEECCCc-EEEEEc-
Q 047728          173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGL-WIKHFDAISSLSMSEDQNLLYSASWDKT-FKVWRT-  249 (474)
Q Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~dg~-i~iwd~-  249 (474)
                      |+..+++...........   ..            ........ .....+....+.|+|||++|+....|.+ +..|++ 
T Consensus       137 ~~~~~g~~~~~t~~~~~~---~~------------~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         137 KIEPNLPSYRITWTGKED---II------------YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             ESSTTSCCEECCSCCBTT---TE------------EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             EECCCCceeeeeeccCCC---cc------------cccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEE
Confidence            999887654322111000   00            00000000 0113344567889999999988765533 443332 


Q ss_pred             ----------------------------------CCcceeeeee-----------ecCcceeEEEecCCCe-EE-EeeCC
Q 047728          250 ----------------------------------SDYKCLESVI-----------AHDDAVNSIVAGFDGL-VF-TGSAD  282 (474)
Q Consensus       250 ----------------------------------~~~~~~~~~~-----------~~~~~v~~v~~~~~~~-l~-~~~~d  282 (474)
                                                        ..+.......           .....+..+.|.+++. ++ .....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~  281 (470)
T d2bgra1         202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI  281 (470)
T ss_dssp             ECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred             eeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeecc
Confidence                                              1111111000           0112234566777762 22 22222


Q ss_pred             C---cEEEEEcccCCCceeeeee--ee-------eecccccEEEEEEcC--CCCEEEEEcCCCcEEEeecCcccccceee
Q 047728          283 G---TVKVWRRELQGKGTKHFFS--QT-------LLKQECAVTALAISP--DAAIVYCGSSDGLVNFWERELNLSHGGVL  348 (474)
Q Consensus       283 g---~i~iwd~~~~~~~~~~~~~--~~-------~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  348 (474)
                      +   .+.++++............  ..       ...+...  ...+.+  ++.+++....||..++|...........+
T Consensus       282 ~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~l  359 (470)
T d2bgra1         282 QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI  359 (470)
T ss_dssp             TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEES
T ss_pred             CCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCceeee
Confidence            2   2445544322111100000  00       0111111  223334  34456677788876666443222222233


Q ss_pred             eecceeeE-EEEecCCEE-EEEeCCC----cEEEE--ECCCCc-eEEE-EeecCCccceEEEEEeeCCccccccceEEEE
Q 047728          349 RGHKLAIL-CLVTAGNLV-FSGSADM----SICIW--RRKENE-HICL-SMLTGHSGPVKCLAVEKDDESLSREKRWILY  418 (474)
Q Consensus       349 ~~~~~~v~-~~~~~~~~l-~sgs~dg----~i~iw--d~~~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~  418 (474)
                      ..+...+. .+.++++.+ +++..++    .-.||  ++..+. ..++ ..+..|...+..++|+||++        +++
T Consensus       360 t~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgk--------y~~  431 (470)
T d2bgra1         360 TKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAK--------YYQ  431 (470)
T ss_dssp             CCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSS--------EEE
T ss_pred             ccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCC--------EEE
Confidence            22333333 345566654 4444332    22455  444433 2222 12446888999999999999        544


Q ss_pred             -Ee--cCCCcEEEEEccCCCC
Q 047728          419 -SG--SLDKSVKMWRVSEQAP  436 (474)
Q Consensus       419 -s~--s~Dg~i~vw~~~~~~~  436 (474)
                       +.  ...-.+.+|+..+++.
T Consensus       432 ~~~s~~~~P~~~l~~~~~g~~  452 (470)
T d2bgra1         432 LRCSGPGLPLYTLHSSVNDKG  452 (470)
T ss_dssp             EEECSBSSCEEEEEETTTTEE
T ss_pred             EEecCCCCCeEEEEECCCCCE
Confidence             33  3444588998887743

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.89  E-value=9.7e-07  Score=80.78  Aligned_cols=207  Identities=9%  Similarity=0.085  Sum_probs=119.0

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-e--EEEee-CCCcEEEEEccc
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-L--VFTGS-ADGTVKVWRREL  292 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~--l~~~~-~dg~i~iwd~~~  292 (474)
                      ....+..|+|++++++|+++.. +.+..|.+.....+....  ........+.+++++ .  ++++. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4445678999999999998875 567777765322222221  223445677888888 2  33222 235555544322


Q ss_pred             CCCc-----------eeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCccccccee--e----eeccee
Q 047728          293 QGKG-----------TKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGV--L----RGHKLA  354 (474)
Q Consensus       293 ~~~~-----------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~--~----~~~~~~  354 (474)
                      ....           ...............+.++.|+|+++++++++. ...|.+|+..........  .    .+....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            1110           000111112223445889999999998887764 457888876543221111  1    122233


Q ss_pred             eEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEeec-----------------CCccceEEEEEeeCCccccccceEE
Q 047728          355 ILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSMLT-----------------GHSGPVKCLAVEKDDESLSREKRWI  416 (474)
Q Consensus       355 v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~-----------------~h~~~v~~l~~~~~~~~~~~~~~~~  416 (474)
                      -+.++++++++++.. .+++|.+|++.......+....                 .+......+.++|+++        +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~  268 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK--------Y  268 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS--------E
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCC--------E
Confidence            478889999886655 5789999999765432222111                 1223456789999999        6


Q ss_pred             EEEec-CC-----CcEEEEEccCC
Q 047728          417 LYSGS-LD-----KSVKMWRVSEQ  434 (474)
Q Consensus       417 l~s~s-~D-----g~i~vw~~~~~  434 (474)
                      |+++. .+     +.|..|++...
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTT
T ss_pred             EEEEcccCCCccceEEEEEEecCC
Confidence            66553 22     23777777653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.4e-06  Score=74.25  Aligned_cols=231  Identities=13%  Similarity=0.056  Sum_probs=134.0

Q ss_pred             EEEEeC-CccccccccCccCEEEEEec--CCEEEEEeCC-Ce--EEEEecCCCCcceeeeecccCccceeeeeecCCCCe
Q 047728          132 IRVWKN-QREFSGFKSNSGLVKAIVIS--NEKIFSGHQD-GK--IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY  205 (474)
Q Consensus       132 v~vwd~-~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (474)
                      |.|-|. +.....+..+...+..-+|+  |++|+-...+ +.  +.+.+...+...                        
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~------------------------   76 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------------------   76 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE------------------------
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee------------------------
Confidence            444452 23444445566778888998  6777755433 32  444444443321                        


Q ss_pred             EEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEE--EEcCCcceeeeeeecCcceeEEEecCCC--eEEEee
Q 047728          206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKV--WRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGS  280 (474)
Q Consensus       206 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~i--wd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~  280 (474)
                               .+..+........|+|+++.++.... ++...+  +.......... ...........+++++  .+++..
T Consensus        77 ---------~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  146 (269)
T d2hqsa1          77 ---------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSD  146 (269)
T ss_dssp             ---------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             ---------EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceee-eeccccccccccccccccceeccc
Confidence                     12236677888999999998887653 333333  33332222222 2233333444566666  666666


Q ss_pred             CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-c--EEEeecCcccccceeeeecceeeEE
Q 047728          281 ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-L--VNFWERELNLSHGGVLRGHKLAILC  357 (474)
Q Consensus       281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~--i~v~d~~~~~~~~~~~~~~~~~v~~  357 (474)
                      .+|...+|.......     ................|+|+++.++..+.++ .  +.+++....... ............
T Consensus       147 ~~g~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~p~  220 (269)
T d2hqsa1         147 QAGRPQVYKVNINGG-----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPS  220 (269)
T ss_dssp             TTSSCEEEEEETTSS-----CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEE
T ss_pred             ccCCceEeeeecccc-----cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce-EeecCccccceE
Confidence            677666665443332     1223334456677889999999888765544 3  444454443321 222233344568


Q ss_pred             EEecCCEEEEEeC---CCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          358 LVTAGNLVFSGSA---DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       358 ~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ++|||+.|+-.+.   ...|.++++..+..   ..+....+.+...+|+|-
T Consensus       221 ~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~---~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         221 LAPNGTMVIYSSSQGMGSVLNLVSTDGRFK---ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETTSCCE---EECCCSSSEEEEEEECCC
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEEeCCCCcEEeEEeCCC
Confidence            9999998875543   35788999988763   356666777888999983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=5e-07  Score=78.46  Aligned_cols=224  Identities=9%  Similarity=0.033  Sum_probs=134.6

Q ss_pred             CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEE-EeeCCCcEEEEEcccCCCcee
Q 047728          221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTK  298 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~  298 (474)
                      -.-.+|++.++|+..++.. ..+.+..++............-......+++.+++.++ +....+.+++++.....    
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~----   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ----   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC----
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce----
Confidence            4457999999998776654 45667777654433222222223346788999998444 44444445544322111    


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEE
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIW  377 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iw  377 (474)
                         .............++++++++++++-..+..+..++............+ ....-+++.++++++++...++.|..+
T Consensus        90 ---~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          90 ---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             ---EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             ---eeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence               1111222356789999999998887777777888876554322211111 223346777888988888888999999


Q ss_pred             ECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcc
Q 047728          378 RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSL  457 (474)
Q Consensus       378 d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l  457 (474)
                      |.......  ......-.....|++.+++.        ++++....+.|..++.........      . ...-..+.+|
T Consensus       167 d~~~~~~~--~~~~~~~~~p~gi~~d~~g~--------l~vsd~~~~~i~~~~~~~~~~~~~------~-~~~~~~P~~i  229 (260)
T d1rwia_         167 EAESNNQV--VLPFTDITAPWGIAVDEAGT--------VYVTEHNTNQVVKLLAGSTTSTVL------P-FTGLNTPLAV  229 (260)
T ss_dssp             CTTTCCEE--ECCCSSCCSEEEEEECTTCC--------EEEEETTTTEEEEECTTCSCCEEC------C-CCSCCCEEEE
T ss_pred             ccccceee--eeeccccCCCccceeeeeee--------eeeeecCCCEEEEEeCCCCeEEEE------c-cCCCCCeEEE
Confidence            98766522  22224445678999999988        788888888888877554321110      0 1111234455


Q ss_pred             ccCCCCCcCCceeec
Q 047728          458 PYAPSFSSQGRICQK  472 (474)
Q Consensus       458 ~~~p~~s~Dg~~l~~  472 (474)
                          ++++||.+.+.
T Consensus       230 ----~~d~~g~l~va  240 (260)
T d1rwia_         230 ----AVDSDRTVYVA  240 (260)
T ss_dssp             ----EECTTCCEEEE
T ss_pred             ----EEeCCCCEEEE
Confidence                56778888765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=3.2e-06  Score=74.08  Aligned_cols=196  Identities=10%  Similarity=0.117  Sum_probs=120.5

Q ss_pred             eEEEecCCC-CEEEEE-ECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728          224 SSLSMSEDQ-NLLYSA-SWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH  299 (474)
Q Consensus       224 ~~l~~~~~~-~~l~s~-s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~  299 (474)
                      ..+++.++. ..+++. +.++.|..++. .++....+.. .......+++.+++ .+++....+.+.+++...  ...  
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g--~~~--  147 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVL--  147 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEE--
T ss_pred             ccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC--cee--
Confidence            345555543 333333 34456766764 4555555532 33556788888888 555555666677776542  100  


Q ss_pred             eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee-eecc--eeeEEEEecCCEEEEEeC-CCcEE
Q 047728          300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL-RGHK--LAILCLVTAGNLVFSGSA-DMSIC  375 (474)
Q Consensus       300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~--~~v~~~~~~~~~l~sgs~-dg~i~  375 (474)
                       .......+......+++.++++.+++....+.|++||...... ..+- .+..  ..-+++.++|+++++-.. ++.|.
T Consensus       148 -~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~-~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~  225 (279)
T d1q7fa_         148 -HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL-RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLT  225 (279)
T ss_dssp             -EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE-EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEE
T ss_pred             -ecccccccccccceeeeccceeEEeeeccccceeeeecCCcee-eeecccccccCCcccccccCCeEEEEECCCCcEEE
Confidence             1111234556788899999999998888899999999765422 1111 1111  223677788987777543 45799


Q ss_pred             EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728          376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP  436 (474)
Q Consensus       376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~  436 (474)
                      +|+.. ++................|++.+++.        +++ ++.+.+|++|+.....+
T Consensus       226 ~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~--------l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         226 IFTQD-GQLISALESKVKHAQCFDVALMDDGS--------VVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EECTT-SCEEEEEEESSCCSCEEEEEEETTTE--------EEE-EETTTEEEEEECSCCCC
T ss_pred             EECCC-CCEEEEEeCCCCCCCEeEEEEeCCCc--------EEE-EeCCCeEEEEEeeeecC
Confidence            99864 44322222223334678999999987        555 45789999999987644

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=7.3e-07  Score=77.40  Aligned_cols=193  Identities=8%  Similarity=0.000  Sum_probs=121.5

Q ss_pred             CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728          222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  300 (474)
                      ....+++.++++++++....+.+++++-.+...+..... .....++++.+++ ++++-.....+..++......     
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-----  131 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----  131 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-----
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccccee-----
Confidence            356788999998777766666666665554444433322 3456889999988 444444555566666543221     


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee-ecceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVFSGSADMSICIWRR  379 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~  379 (474)
                       .............++++++++++++...++.|..+|.+.......... .....-+++.++++++++....+.|..++.
T Consensus       132 -~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         132 -TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             -EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             -eeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence             111112233457899999999988888889999999876543221111 111233566778888888888888998887


Q ss_pred             CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728          380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV  431 (474)
Q Consensus       380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~  431 (474)
                      ...... + .....-....+|++.+++.        ++++-..+++|+..+.
T Consensus       211 ~~~~~~-~-~~~~~~~~P~~i~~d~~g~--------l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         211 GSTTST-V-LPFTGLNTPLAVAVDSDRT--------VYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TCSCCE-E-CCCCSCCCEEEEEECTTCC--------EEEEEGGGTEEEEECC
T ss_pred             CCCeEE-E-EccCCCCCeEEEEEeCCCC--------EEEEECCCCEEEEEeC
Confidence            655422 1 1122234578999999987        7777666676654443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=1.2e-05  Score=70.34  Aligned_cols=156  Identities=12%  Similarity=0.101  Sum_probs=104.2

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      .......+++.+++.++++....+.+.+++. +++.+..+.  .+......+++.+++ .+++....+.|++||..... 
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-  189 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-  189 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-
T ss_pred             cccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCce-
Confidence            3445678999999988888777788888874 456666553  344567888899888 66777778899999865211 


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceee---eecceeeEEEEecCCEEEEEeCC
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVL---RGHKLAILCLVTAGNLVFSGSAD  371 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~sgs~d  371 (474)
                       .   ......+.......|+++++++++++-.. ++.|.+|+.... ....+.   ......-+++.++|.+++ .+.+
T Consensus       190 -~---~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~-~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n  263 (279)
T d1q7fa_         190 -L---RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALESKVKHAQCFDVALMDDGSVVL-ASKD  263 (279)
T ss_dssp             -E---EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEEEESSCCSCEEEEEEETTTEEEE-EETT
T ss_pred             -e---eeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCC-EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCC
Confidence             0   01111234456889999999997776544 457999986533 221221   112334567788886554 5678


Q ss_pred             CcEEEEECCCC
Q 047728          372 MSICIWRRKEN  382 (474)
Q Consensus       372 g~i~iwd~~~~  382 (474)
                      +.|++|.....
T Consensus       264 ~~v~~fr~~~~  274 (279)
T d1q7fa_         264 YRLYIYRYVQL  274 (279)
T ss_dssp             TEEEEEECSCC
T ss_pred             CeEEEEEeeee
Confidence            99999988654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.67  E-value=5.5e-06  Score=73.78  Aligned_cols=230  Identities=10%  Similarity=0.066  Sum_probs=132.4

Q ss_pred             ccCCeeEEEecCCCCEEEEEEC-------CCcEEEEEcCCcceeeeeeec----CcceeEEEecCCC-eEEEeeCCCcEE
Q 047728          219 HFDAISSLSMSEDQNLLYSASW-------DKTFKVWRTSDYKCLESVIAH----DDAVNSIVAGFDG-LVFTGSADGTVK  286 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~~-~l~~~~~dg~i~  286 (474)
                      .-.....++|.++|+++++...       +++|..||..++.........    ......+++.+++ .++++.....|.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            3344667899999987776432       467888998877654332211    2235689999998 777777777788


Q ss_pred             EEEcccCCCceeeeeeeeeecc-cccEEEEEEcCCCCEEEEEcC---------------CCcEEEeecCcccccceeeee
Q 047728          287 VWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISPDAAIVYCGSS---------------DGLVNFWERELNLSHGGVLRG  350 (474)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~---------------dg~i~v~d~~~~~~~~~~~~~  350 (474)
                      .++......   ........+. -...+.++++++|++.++-..               .|.|..++.+..  .......
T Consensus        96 ~~~~~g~~~---~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~--~~~~~~~  170 (314)
T d1pjxa_          96 VVQTDGTFE---EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--MIQVDTA  170 (314)
T ss_dssp             EEETTSCEE---ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC--EEEEEEE
T ss_pred             EEeCCCcEE---EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc--eeEeeCC
Confidence            887653211   0000111111 123577999999988776422               234555544322  1111111


Q ss_pred             -cceeeEEEEecCC-----EEEEEeCCCcEEEEECCCCceEE----EEeecC-CccceEEEEEeeCCccccccceEEEEE
Q 047728          351 -HKLAILCLVTAGN-----LVFSGSADMSICIWRRKENEHIC----LSMLTG-HSGPVKCLAVEKDDESLSREKRWILYS  419 (474)
Q Consensus       351 -~~~~v~~~~~~~~-----~l~sgs~dg~i~iwd~~~~~~~~----~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s  419 (474)
                       ....-++++++++     ++++-+..+.|..||+.......    ...+.+ +......+++..+++        +.++
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn--------lyVa  242 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN--------LLVA  242 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC--------EEEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc--------EEEE
Confidence             1122467777654     44555678889999876432211    112222 223456899999988        7777


Q ss_pred             ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc-eeec
Q 047728          420 GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR-ICQK  472 (474)
Q Consensus       420 ~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~-~l~~  472 (474)
                      ....+.|.+|+...+..       ...+......++++    +|.+|++ +.++
T Consensus       243 ~~~~g~I~~~dp~~g~~-------~~~i~~p~~~~t~~----afg~d~~~lyVt  285 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQP-------KMRIRCPFEKPSNL----HFKPQTKTIFVT  285 (314)
T ss_dssp             EETTTEEEEECTTCBSC-------SEEEECSSSCEEEE----EECTTSSEEEEE
T ss_pred             EcCCCEEEEEeCCCCEE-------EEEEECCCCCEEEE----EEeCCCCEEEEE
Confidence            76778899998765532       12222333445666    5677886 4443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.64  E-value=3.4e-05  Score=68.70  Aligned_cols=182  Identities=10%  Similarity=0.096  Sum_probs=106.5

Q ss_pred             cCCeeEEEecCCCCEEEEEECC----CcEEEEEcCCcceeeeeee--cCcceeEEEecCCCeEEEeeCCC-----cEEEE
Q 047728          220 FDAISSLSMSEDQNLLYSASWD----KTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDGLVFTGSADG-----TVKVW  288 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~l~~~~~dg-----~i~iw  288 (474)
                      ......|++.++|+++++...+    +.|...+............  -....+.+++.++|.+..+...+     .-.+|
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~  160 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  160 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence            3456789999999877765432    3355555544443333221  12346788999999555544322     12233


Q ss_pred             EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeee--------ecc-eeeEEE
Q 047728          289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLR--------GHK-LAILCL  358 (474)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~--------~~~-~~v~~~  358 (474)
                      .+......     .......-...+.++|+|+++.|+++ +..+.|..||+...........        ... ..-+++
T Consensus       161 ~~~~dg~~-----~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v  235 (319)
T d2dg1a1         161 YVSPDFRT-----VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  235 (319)
T ss_dssp             EECTTSCC-----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             EEecccce-----eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence            33222211     11112223346789999999866544 5678999998764322111111        011 123677


Q ss_pred             EecCCEEEEEeCCCcEEEEECCCCceEEEEeec----CCccceEEEEEeeCCc
Q 047728          359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLT----GHSGPVKCLAVEKDDE  407 (474)
Q Consensus       359 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~~~~~~~  407 (474)
                      ..+|++.++....+.|.+||.. ++.+....+.    ++...+++++|.++..
T Consensus       236 D~~G~l~Va~~~~g~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         236 DSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             BTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             cCCCCEEEEEcCCCEEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence            7789988888889999999964 5533223333    3445688999998776

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.60  E-value=1.2e-05  Score=71.63  Aligned_cols=203  Identities=9%  Similarity=0.108  Sum_probs=122.5

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEee-C--CCcEEEEEcccCCCce
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGS-A--DGTVKVWRRELQGKGT  297 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~  297 (474)
                      ..+..++|.++|++.++-...+.|..|+..+.+....+.........+++.++|.++++. .  .....++.+.......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345689999999877777788999999988776666665556678899999999444433 2  2233444433222211


Q ss_pred             eeeeeeeeecccccEEEEEEcCCCCEEEEEcC------CCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEE-Ee
Q 047728          298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSS------DGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFS-GS  369 (474)
Q Consensus       298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s-gs  369 (474)
                      ..  .............+++.++|++.++...      .+.+..++....... ....+ ....-++++++++.|+. -+
T Consensus       120 ~~--~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         120 QD--IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             EE--EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ee--eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE-EEeeccceeeeeeeccccceEEEecc
Confidence            11  1111122345788999999987665432      123555555433211 12111 22234778888886654 45


Q ss_pred             CCCcEEEEECCCCce-E-E----EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          370 ADMSICIWRRKENEH-I-C----LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~-~-~----~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      ..+.|..|++..... . .    .............+++..++.        +.++....+.|.+|+- +++
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~--------l~Va~~~~g~V~~~~p-~G~  259 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN--------LYVAMYGQGRVLVFNK-RGY  259 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC--------EEEEEETTTEEEEECT-TSC
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC--------EEEEEcCCCEEEEECC-CCc
Confidence            678999999864311 0 0    011111122356899999998        7777788899999995 453

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=9.1e-06  Score=76.57  Aligned_cols=237  Identities=8%  Similarity=0.000  Sum_probs=115.6

Q ss_pred             CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCc-----------------ceeEEEecCCC-eEEEee-
Q 047728          221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDD-----------------AVNSIVAGFDG-LVFTGS-  280 (474)
Q Consensus       221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~-----------------~v~~v~~~~~~-~l~~~~-  280 (474)
                      ..+....|+|||+.||-.. ++.|.+.+..++..++.... ...                 .-.++.|+||| .|+... 
T Consensus       114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            3455678999999998775 57788888776655443321 111                 12467899999 555443 


Q ss_pred             CCCcEEEEEc---------------------------------ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728          281 ADGTVKVWRR---------------------------------ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG  327 (474)
Q Consensus       281 ~dg~i~iwd~---------------------------------~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  327 (474)
                      .+..|..+.+                                 .....................+..+.|.+++++++..
T Consensus       193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~  272 (465)
T d1xfda1         193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW  272 (465)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEE
Confidence            3344444432                                 2111100000000111123347788999998866553


Q ss_pred             cC-C---CcEEEeecCcccccceeeeecce------eeEEEEecCCEEE---EEeCCC--cEEEEECCCC----ceEEEE
Q 047728          328 SS-D---GLVNFWERELNLSHGGVLRGHKL------AILCLVTAGNLVF---SGSADM--SICIWRRKEN----EHICLS  388 (474)
Q Consensus       328 ~~-d---g~i~v~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~l~---sgs~dg--~i~iwd~~~~----~~~~~~  388 (474)
                      .. +   ..|.++|..++............      ....+.++|+.++   ..-.+|  .+...++...    ....+.
T Consensus       273 ~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~  352 (465)
T d1xfda1         273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ  352 (465)
T ss_dssp             EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred             EccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeE
Confidence            22 2   24777888877544322222221      2345667776332   222232  3333332111    000122


Q ss_pred             eecCCccceEEE-EEeeCCccccccceEEEEEecCCC--cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCc
Q 047728          389 MLTGHSGPVKCL-AVEKDDESLSREKRWILYSGSLDK--SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSS  465 (474)
Q Consensus       389 ~~~~h~~~v~~l-~~~~~~~~~~~~~~~~l~s~s~Dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~  465 (474)
                      .+....-.|..+ .|.+++..       +.+++..++  .-.||.+.-.....  ..++.......    +-.+.++|||
T Consensus       353 ~LT~G~w~V~~i~~~d~~~~~-------vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~----~~~~~~~~S~  419 (465)
T d1xfda1         353 SITSGDWDVTKILAYDEKGNK-------IYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN----CTYFSASFSH  419 (465)
T ss_dssp             BSCCSSSCEEEEEEEETTTTE-------EEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS----CCCCEEEECT
T ss_pred             EeccCCceEEEEEEEcCCCCE-------EEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC----CCEEEEEECC
Confidence            333333446665 57777663       444554442  44577765321110  01111111111    1223458899


Q ss_pred             CCceee
Q 047728          466 QGRICQ  471 (474)
Q Consensus       466 Dg~~l~  471 (474)
                      ||++++
T Consensus       420 ~~~y~v  425 (465)
T d1xfda1         420 SMDFFL  425 (465)
T ss_dssp             TSSEEE
T ss_pred             CCCEEE
Confidence            999887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.40  E-value=0.00019  Score=62.80  Aligned_cols=192  Identities=10%  Similarity=0.016  Sum_probs=119.8

Q ss_pred             CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728          120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC  198 (474)
Q Consensus       120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (474)
                      +++..+--..+.|..||..............+.++++. ++.|+.++.+| |.++|..+++..........         
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~~g-l~~~d~~tg~~~~l~~~~~~---------   99 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELESD---------   99 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSSTT---------
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEeCc-cEEeecccceeeEEeeeecC---------
Confidence            44555544566777777543322222334567788876 55666677765 88899888764322111000         


Q ss_pred             ecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728          199 SMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG  274 (474)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  274 (474)
                                         .....++++.+.++|++.++...    .+.-.+|.+..++....... -...+.+++++++
T Consensus       100 -------------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~  159 (295)
T d2ghsa1         100 -------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDG  159 (295)
T ss_dssp             -------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTS
T ss_pred             -------------------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCC
Confidence                               02235778889999987666542    23456677767665544433 3356789999998


Q ss_pred             --eEEEeeCCCcEEEEEcccCCCc--eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728          275 --LVFTGSADGTVKVWRRELQGKG--TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN  341 (474)
Q Consensus       275 --~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~  341 (474)
                        ++++-+..+.|..|++......  ..................++++.+|++.++.-..+.|..||.+..
T Consensus       160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~  230 (295)
T d2ghsa1         160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN  230 (295)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc
Confidence              5666677888999987543221  111112223344566889999999998888778889999997543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.29  E-value=0.00062  Score=59.40  Aligned_cols=176  Identities=14%  Similarity=0.091  Sum_probs=106.4

Q ss_pred             cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee----cCcceeEEEecCCCeEEEeeC-----CCcEEEEEc
Q 047728          220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA----HDDAVNSIVAGFDGLVFTGSA-----DGTVKVWRR  290 (474)
Q Consensus       220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~l~~~~~-----dg~i~iwd~  290 (474)
                      ...+.++++.+++.++++ +.+ .|.++|..+++.......    ....++.+.+.++|.+..++.     .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            345778998888866654 555 488999998875433221    123578889999995554432     234456665


Q ss_pred             ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecCccccc--c--eee-e--ecc--eeeEEEEe
Q 047728          291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWERELNLSH--G--GVL-R--GHK--LAILCLVT  360 (474)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~--~--~~~-~--~~~--~~v~~~~~  360 (474)
                      ..+.       .......-.....++|+++++.++. -+..+.|..|++......  .  ... .  +..  ..-+++..
T Consensus       136 ~~g~-------~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~  208 (295)
T d2ghsa1         136 AKGK-------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  208 (295)
T ss_dssp             ETTE-------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             cCCc-------EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC
Confidence            4321       1112222334678999999986654 456778988886532111  1  111 1  111  22356666


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe-eCCc
Q 047728          361 AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE-KDDE  407 (474)
Q Consensus       361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~  407 (474)
                      +|++.++.-..+.|..||.. ++.  +..+.--...+++++|- ++.+
T Consensus       209 ~GnlWva~~~~g~V~~~dp~-G~~--~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         209 EGHIWNARWGEGAVDRYDTD-GNH--IARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             TSCEEEEEETTTEEEEECTT-CCE--EEEEECSCSBEEEEEEESTTSC
T ss_pred             CCCEEeeeeCCCceEEecCC-CcE--eeEecCCCCceEEEEEeCCCCC
Confidence            78888887788899999975 443  33343333568999997 4544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2e-05  Score=74.14  Aligned_cols=219  Identities=10%  Similarity=-0.020  Sum_probs=116.1

Q ss_pred             CeeEEEecCCCCEEEEEE---------CCCcEEEEEcCCcceeeee--eecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728          222 AISSLSMSEDQNLLYSAS---------WDKTFKVWRTSDYKCLESV--IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR  289 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd  289 (474)
                      .+....|+||+++++...         ..+.+.++|+.+++.....  ......+....|+||| .++-. .++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEe
Confidence            566778999999988764         3567899999887654322  2234456668899999 54443 467787777


Q ss_pred             cccCCCceeeeeeeeeeccc-----------------ccEEEEEEcCCCCEEEEEcCC-CcEEEeecCcccccceeeeec
Q 047728          290 RELQGKGTKHFFSQTLLKQE-----------------CAVTALAISPDAAIVYCGSSD-GLVNFWERELNLSHGGVLRGH  351 (474)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~-----------------~~v~~l~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~  351 (474)
                      .......     ..+..+..                 ..-..+.|+|||+.||....| ..|..+.+.....      ..
T Consensus       141 ~~~~~~~-----~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~------~~  209 (465)
T d1xfda1         141 HVGKQAI-----RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG------SI  209 (465)
T ss_dssp             SSSSCCE-----EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS------SS
T ss_pred             cCCCceE-----EEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccc------cc
Confidence            6543321     11111111                 112567899999999987533 3344443321100      00


Q ss_pred             ceeeEEEE--ecCCEEEEEeCCCcEEEEECCCCceEEEEe----ecCCccceEEEEEeeCCccccccceEEEEE-ecCC-
Q 047728          352 KLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSM----LTGHSGPVKCLAVEKDDESLSREKRWILYS-GSLD-  423 (474)
Q Consensus       352 ~~~v~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s-~s~D-  423 (474)
                      ......+.  .-|.-    .....+.++|+.++.......    ......-+..+.|.++++        +++. ...+ 
T Consensus       210 ~p~~~~~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~--------~~~~~~nR~q  277 (465)
T d1xfda1         210 YPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK--------VAVTWLNRAQ  277 (465)
T ss_dssp             SCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE--------EEEEEEETTS
T ss_pred             cceeeeeeccccCCC----CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe--------EEEEEEcccc
Confidence            00011111  01110    011247788887654321111    112233478899999987        4444 3322 


Q ss_pred             --CcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCcee
Q 047728          424 --KSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRIC  470 (474)
Q Consensus       424 --g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l  470 (474)
                        ..|.++|..++......    .  .....-|.-....|.|++||+.+
T Consensus       278 ~~~~i~~~d~~tg~~~~~~----~--e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         278 NVSILTLCDATTGVCTKKH----E--DESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CEEEEEEEETTTCCEEEEE----E--EECSSCCCCCCCCCEECTTSCSE
T ss_pred             ccceEEEEcCCCCcEEEEE----E--EcCCceEeccCCceeEccCCCee
Confidence              25777787776432111    0  11223343334567899999843

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.86  E-value=0.0054  Score=54.76  Aligned_cols=228  Identities=9%  Similarity=0.042  Sum_probs=129.2

Q ss_pred             EEEecC---CCCEEEEEE-CCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC---eEEEeeCCC-------------
Q 047728          225 SLSMSE---DQNLLYSAS-WDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG---LVFTGSADG-------------  283 (474)
Q Consensus       225 ~l~~~~---~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~---~l~~~~~dg-------------  283 (474)
                      .+.+..   ||++|++.. .+.+|-+.|+.+.++.+.+.. ....+..+...+++   +++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455554   788888776 678899999999988665433 23445666655443   666665532             


Q ss_pred             -----cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---------------cEEEee------
Q 047728          284 -----TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---------------LVNFWE------  337 (474)
Q Consensus       284 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---------------~i~v~d------  337 (474)
                           .+.++|........    ...   -......+.++++|+++++.+.+.               .+.+++      
T Consensus       169 ~~y~~~~t~ID~~tm~V~~----QV~---V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAW----QVL---VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEE----EEE---ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             hhcceEEEEEecCCceEEE----Eee---eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence                 25566665332111    111   123456789999999998876432               123333      


Q ss_pred             -----------------cCcc--cccc-eeeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCce----------EE
Q 047728          338 -----------------RELN--LSHG-GVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEH----------IC  386 (474)
Q Consensus       338 -----------------~~~~--~~~~-~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~----------~~  386 (474)
                                       .+..  .... .+..+....-+.++|||+++++++ .+.++.++|++.-..          ..
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~  321 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  321 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence                             2211  0011 111122223367889999888766 689999999963211          11


Q ss_pred             EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC------CC--CCCCCcccccccCCCCCCCccc
Q 047728          387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ------AP--PLVSTTQQHPLEGHGVAPNSLP  458 (474)
Q Consensus       387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~------~~--~~~~~~~~~~~~~~~~~v~~l~  458 (474)
                      ..... ..-.-...+|..++.        ...|---|..|.-|++...      ..  +.......+...||.....+- 
T Consensus       322 ~~e~e-lglgPLht~fd~~g~--------aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~-  391 (459)
T d1fwxa2         322 VAEPE-LGLGPLHTAFDGRGN--------AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGE-  391 (459)
T ss_dssp             EECCB-CCSCEEEEEECTTSE--------EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTT-
T ss_pred             Eeecc-cCcCccccccCCCce--------EEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCC-
Confidence            11111 122334556777765        5667778999999998642      11  111112222334443332222 


Q ss_pred             cCCCCCcCCceeec
Q 047728          459 YAPSFSSQGRICQK  472 (474)
Q Consensus       459 ~~p~~s~Dg~~l~~  472 (474)
                         +..|||++|++
T Consensus       392 ---t~~~dgk~l~~  402 (459)
T d1fwxa2         392 ---TLDATNDWLVC  402 (459)
T ss_dssp             ---STTCCSSEEEE
T ss_pred             ---cCCCCCCEEEE
Confidence               67999999875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.81  E-value=0.0016  Score=55.83  Aligned_cols=100  Identities=9%  Similarity=0.071  Sum_probs=60.8

Q ss_pred             ecCC--CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEE-eeCCC-----cEEEEEcccCCCcee
Q 047728          228 MSED--QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT-GSADG-----TVKVWRRELQGKGTK  298 (474)
Q Consensus       228 ~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~-~~~dg-----~i~iwd~~~~~~~~~  298 (474)
                      .+|+  |+.++-.+ ++.|.+.|+.+++. ..+..+...+...+|+||| .|+. ...++     .|.+++...+.....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4788  88887665 46799999988775 4566667788899999999 5553 33232     244445443221100


Q ss_pred             eeeeeeeecccccEEEEEEcCCCCEEEEEcC
Q 047728          299 HFFSQTLLKQECAVTALAISPDAAIVYCGSS  329 (474)
Q Consensus       299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  329 (474)
                      ..................|+|+++.|+....
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEc
Confidence            0001111122234577899999999887543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.68  E-value=0.0095  Score=56.81  Aligned_cols=166  Identities=10%  Similarity=-0.012  Sum_probs=90.7

Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeE---------EEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeee------
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNS---------IVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFS------  302 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~---------v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~------  302 (474)
                      ..+...|.++++.+..++.....+..         .....++    .++.++.+|.+.++|.++++........      
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            45788899999988877653322221         1122233    4677888999999997765431100000      


Q ss_pred             -e------------------------eeecccc--cEEEEEEcCCCCEEEEEcCC-------------------------
Q 047728          303 -Q------------------------TLLKQEC--AVTALAISPDAAIVYCGSSD-------------------------  330 (474)
Q Consensus       303 -~------------------------~~~~~~~--~v~~l~~~~~~~~l~~~~~d-------------------------  330 (474)
                       .                        ......+  .-...+++|+..++++...+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence             0                        0000000  00125677777766654433                         


Q ss_pred             ------------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceE
Q 047728          331 ------------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVK  398 (474)
Q Consensus       331 ------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~  398 (474)
                                  |.|.-+|+.+++..-+...+.....-.+...+.++++|+.||.++.+|.++++.+-...+.+.. .-.
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~-~a~  510 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG-IGS  510 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSC
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc-eec
Confidence                        3455566666554433333222211223446788999999999999999999954333333211 122


Q ss_pred             EEEEeeCCcc
Q 047728          399 CLAVEKDDES  408 (474)
Q Consensus       399 ~l~~~~~~~~  408 (474)
                      -+.|..+++.
T Consensus       511 P~ty~~dGkq  520 (571)
T d2ad6a1         511 PMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEETTEE
T ss_pred             ceEEEECCEE
Confidence            2556667763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.63  E-value=0.0079  Score=51.12  Aligned_cols=231  Identities=11%  Similarity=0.019  Sum_probs=117.7

Q ss_pred             EEEEc--CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEe-CCC-----eEEEEecCCCCccee
Q 047728          115 SLAAA--GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGH-QDG-----KIRVWKVSSKDASIH  183 (474)
Q Consensus       115 ~~~~~--~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg-----~i~vwd~~~~~~~~~  183 (474)
                      .++|+  |+.+|-.+ +|.|.+.|.. .....+..+.+.+....|+  +++|+-.. .++     .|.+++...++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            35788  89887655 4567777754 3455566777788888998  66776443 222     355556655543211


Q ss_pred             eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC------CcEEEEEcCCcceeee
Q 047728          184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD------KTFKVWRTSDYKCLES  257 (474)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~  257 (474)
                      ....                          ..............|+|+++.|+.....      ..+...+...+.... 
T Consensus        84 t~~~--------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  136 (281)
T d1k32a2          84 TYFS--------------------------GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-  136 (281)
T ss_dssp             CCCC--------------------------EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-
T ss_pred             eecC--------------------------CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE-
Confidence            1000                          0001122345678899999998875432      224455554443322 


Q ss_pred             eeecCcceeEEEecCCC-eEEEeeCCCc-----------EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728          258 VIAHDDAVNSIVAGFDG-LVFTGSADGT-----------VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY  325 (474)
Q Consensus       258 ~~~~~~~v~~v~~~~~~-~l~~~~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  325 (474)
                        .+......+.+.+.+ .++....+..           ..+..... .      ................+.++. .+.
T Consensus       137 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~-~~~  206 (281)
T d1k32a2         137 --LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-G------AFKKIVDMSTHVSSPVIVGHR-IYF  206 (281)
T ss_dssp             --CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-T------EEEEEECCSSCCEEEEEETTE-EEE
T ss_pred             --ecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccc-c------ceeeccCCccccceeeeeccc-cce
Confidence              122223333333333 3332222111           11111110 0      011112222333444455442 233


Q ss_pred             EEcCC--CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728          326 CGSSD--GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       326 ~~~~d--g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                      ....+  ..|.++|++..... .+.......+..++++|+.|+-. .++.|+++|+.+++..
T Consensus       207 ~~~~~~~~~l~~~d~~g~~~~-~lt~~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         207 ITDIDGFGQIYSTDLDGKDLR-KHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             EECTTSSCEEEEEETTSCSCE-ECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             ecccccccceEEEeCCCCceE-EeecCCCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            33333  35777787765432 23233344567899999887764 4788999999988744

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.63  E-value=0.0052  Score=55.37  Aligned_cols=107  Identities=14%  Similarity=0.107  Sum_probs=59.3

Q ss_pred             EEEcCCEEEEeeCCC-----------cEEEEeCCcc----cccc-ccCccCEEEEEe--cCCEEEEEeCC-CeEEEEecC
Q 047728          116 LAAAGDLLYTGSDSK-----------NIRVWKNQRE----FSGF-KSNSGLVKAIVI--SNEKIFSGHQD-GKIRVWKVS  176 (474)
Q Consensus       116 ~~~~~~~l~tgs~dg-----------~v~vwd~~~~----~~~~-~~h~~~V~~i~~--~~~~l~s~~~d-g~i~vwd~~  176 (474)
                      +..+|++++.|+.+.           .+.+||....    .... ..|.....+.++  ++..++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            344678888777421           2678985421    1111 122222222333  36667766554 579999988


Q ss_pred             CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC------CcEEEEEcC
Q 047728          177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD------KTFKVWRTS  250 (474)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------g~i~iwd~~  250 (474)
                      +......   ..++                            ....-...+..+|+++++.|+.+      ..+.+||..
T Consensus       107 ~~~w~~~---~~~~----------------------------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3         107 SDSWIPG---PDMQ----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             GTEEEEC---CCCS----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cCccccc---cccc----------------------------ccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            7654221   1111                            11112355667789998888743      468999988


Q ss_pred             Ccc
Q 047728          251 DYK  253 (474)
Q Consensus       251 ~~~  253 (474)
                      +.+
T Consensus       156 ~~~  158 (387)
T d1k3ia3         156 SKT  158 (387)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.37  E-value=0.044  Score=52.27  Aligned_cols=75  Identities=13%  Similarity=0.110  Sum_probs=43.3

Q ss_pred             CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC--CccceEEEEEeeCCcc
Q 047728          331 GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG--HSGPVKCLAVEKDDES  408 (474)
Q Consensus       331 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~  408 (474)
                      |.|.-||+.+++..-+........--.++..+.+++.|+.||.++.+|.++++.+-...+..  +..+   +.|..+++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P---~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC---eEEEECCEE
Confidence            34555666665544333222221112234467899999999999999999999543333321  2233   445557763

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.033  Score=47.02  Aligned_cols=220  Identities=6%  Similarity=0.013  Sum_probs=128.4

Q ss_pred             CccCEEEEEec--CCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728          147 NSGLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI  223 (474)
Q Consensus       147 h~~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  223 (474)
                      +...+.+|+|+  ++.|+-+ ..++.|+..+++........                                ......+
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~--------------------------------~~~~~~p   81 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--------------------------------RQDLGSP   81 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--------------------------------CTTCCCE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE--------------------------------Eeccccc
Confidence            44457778886  5666655 45677888887765432111                                0122457


Q ss_pred             eEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeee
Q 047728          224 SSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHF  300 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~  300 (474)
                      .+|++..-+..|+.+ ...+.|.+.++........+......+..+++.|.. +++... ..+..+|+.....+..... 
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-  160 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-  160 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-
Confidence            789998766666655 456789999987654433333334567899998876 444332 2234456654433332111 


Q ss_pred             eeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEE
Q 047728          301 FSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWR  378 (474)
Q Consensus       301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd  378 (474)
                         .....-.....+++++.++.|+.+ ...+.|...+++..... .+..+-.. -..++.++..|+... ..+.|...|
T Consensus       161 ---i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~-~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         161 ---LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             ---EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCCS-EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE-EEECCCCC-cEEEEEECCEEEEEECCCCEEEEEE
Confidence               112233467899999887777655 45678998888765432 23332222 245555666666554 568888889


Q ss_pred             CCCCceEEEEeecCCccceEEEEEeeC
Q 047728          379 RKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ..+++.. ............++++.++
T Consensus       236 ~~~g~~~-~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         236 LAISKEM-DTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TTTTEEE-EEECCSSCCCCCCEEEECS
T ss_pred             CCCCccc-eEECCCCCCCcceEEEeCC
Confidence            8877643 2223333445556666554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.12  E-value=0.12  Score=48.92  Aligned_cols=47  Identities=28%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC--CccceEEEEEeeCCc
Q 047728          358 LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG--HSGPVKCLAVEKDDE  407 (474)
Q Consensus       358 ~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~  407 (474)
                      ++..+.+|++|+.||.++.+|.++++.+-...+..  +..+   +.|..+++
T Consensus       484 lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             EEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            45568899999999999999999999543333322  1223   44556776

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.076  Score=44.61  Aligned_cols=197  Identities=8%  Similarity=-0.017  Sum_probs=117.3

Q ss_pred             ccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC
Q 047728          219 HFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      +...+..|+|.+..+.|+-.. .++.|+..++........+......+..+++..-+  ..++-...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            444577899998777777664 55778888887655444443333567888886544  445556678899998874332


Q ss_pred             ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-C--cEEEeecCcccccceeeeec--ceeeEEEEecCCEEEEE-e
Q 047728          296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-G--LVNFWERELNLSHGGVLRGH--KLAILCLVTAGNLVFSG-S  369 (474)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg-s  369 (474)
                            ..........+..++++|...+|+..... +  .|...++...... .+....  ...-+++.+.++.|+.. .
T Consensus       114 ------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         114 ------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             ------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             ------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeeecccccceEEEeecCcEEEEEeC
Confidence                  11112233568899999977777654332 2  3444455443222 122111  12346666667767555 4


Q ss_pred             CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      ..+.|...|+.......  .+.+-.. ..+|++. ++.        +..+-...+.|...+..++
T Consensus       187 ~~~~I~~~~~~g~~~~~--v~~~~~~-P~~lav~-~~~--------lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         187 GTHRAECLNPAQPGRRK--VLEGLQY-PFAVTSY-GKN--------LYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTTEEEEEETTEEEEEE--EEECCCS-EEEEEEE-TTE--------EEEEETTTTEEEEEETTTT
T ss_pred             CCCEEEEEECCCCCeEE--EECCCCC-cEEEEEE-CCE--------EEEEECCCCEEEEEECCCC
Confidence            67889999987655322  2333222 3578776 333        5555556777888787765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.08  Score=44.58  Aligned_cols=201  Identities=10%  Similarity=0.048  Sum_probs=116.2

Q ss_pred             ccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcc---eeee-eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728          219 HFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYK---CLES-VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE  291 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~---~~~~-~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~  291 (474)
                      ....+..++|.+..+.|+-.. .++.|.-.++....   .... +......+..+++...+  ..++-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            344577899998887777665 45666666654321   1122 22223456677776544  55555667789999887


Q ss_pred             cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc--CCCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEE
Q 047728          292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS--SDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFS  367 (474)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s  367 (474)
                      ....      .............++++|...+|+...  ..+.|...++...... .+...  ....-+++.+.++.|+-
T Consensus       108 g~~~------~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         108 GVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CceE------EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee-cccccccceeeEEEeeccccEEEE
Confidence            4321      222333445688999999666665543  3345666666544222 12211  11233566666666665


Q ss_pred             E-eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728          368 G-SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA  435 (474)
Q Consensus       368 g-s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~  435 (474)
                      + ...+.|...++.......+...........+|++.. +.        +..+-..++.|...+..++.
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~--------ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DK--------VFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TE--------EEEEETTTTEEEEEETTTCC
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CE--------EEEEECCCCeEEEEECCCCc
Confidence            5 556889999997665333333333334566788773 33        55665677888777766663

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.92  E-value=0.12  Score=48.92  Aligned_cols=33  Identities=6%  Similarity=0.164  Sum_probs=26.5

Q ss_pred             EEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728          153 AIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR  185 (474)
Q Consensus       153 ~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  185 (474)
                      .+++.++.|+.++.||.|.-.|.++++......
T Consensus       110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~  142 (571)
T d2ad6a1         110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVE  142 (571)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceeeCCeEEEEeCCCcEEeeehhhhhhhcccc
Confidence            456668889999999999999999998765443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.87  E-value=0.19  Score=47.28  Aligned_cols=165  Identities=16%  Similarity=0.131  Sum_probs=89.6

Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeE---------EEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee-----
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNS---------IVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ-----  303 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~---------v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----  303 (474)
                      ..|...|+++++....++.....+..         +.+..++    .++.+..+|.+.++|..+++.........     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            45777888999887766543322221         1222233    57778899999999987654321110000     


Q ss_pred             ee-----------------------eccc--ccEEEEEEcCCCCEEEEEcCC----------------------------
Q 047728          304 TL-----------------------LKQE--CAVTALAISPDAAIVYCGSSD----------------------------  330 (474)
Q Consensus       304 ~~-----------------------~~~~--~~v~~l~~~~~~~~l~~~~~d----------------------------  330 (474)
                      ..                       ....  ..-...+++|+..++++...+                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence            00                       0000  001134567776666654432                            


Q ss_pred             --------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728          331 --------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV  402 (474)
Q Consensus       331 --------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~  402 (474)
                              |.|.-||+.+++..-+...+....--.++-.+.++++|+.||.++.+|.++++.+-...+..-. .-.-+.+
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~-~~~P~ty  508 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTF  508 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCc-cccCEEE
Confidence                    3455566666655444333322222234556789999999999999999999954333332211 1112455


Q ss_pred             eeCCc
Q 047728          403 EKDDE  407 (474)
Q Consensus       403 ~~~~~  407 (474)
                      ..+++
T Consensus       509 ~~dGk  513 (560)
T d1kv9a2         509 ELAGR  513 (560)
T ss_dssp             EETTE
T ss_pred             EECCE
Confidence            56775

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.84  E-value=0.21  Score=47.25  Aligned_cols=77  Identities=21%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc
Q 047728          331 GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES  408 (474)
Q Consensus       331 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  408 (474)
                      |.|.-+|+.+++..-+...++...--.++..+.++++|+.||.++.+|.++++.+-...+..- ..-.-+.+..+++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~-~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG-IVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC-ccccCEEEEECCEE
Confidence            456666777665554444333322223456788999999999999999999995433333221 11112566677763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.83  E-value=0.027  Score=50.16  Aligned_cols=186  Identities=14%  Similarity=0.165  Sum_probs=108.8

Q ss_pred             EEEEECCCcEEEEEcCCcceeeeeeecC---------------------------------------cce--eEEEecC-
Q 047728          235 LYSASWDKTFKVWRTSDYKCLESVIAHD---------------------------------------DAV--NSIVAGF-  272 (474)
Q Consensus       235 l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------------------------------~~v--~~v~~~~-  272 (474)
                      |.+|+..|.|+|+-+-+++.+..+....                                       +..  ..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5677888999999887777665443100                                       000  1233332 


Q ss_pred             --CC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcCCC---------------
Q 047728          273 --DG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSSDG---------------  331 (474)
Q Consensus       273 --~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg---------------  331 (474)
                        ||  .++.-..+..|.+.|++..+..     ..........+..+...+  +..++++++.+.               
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~-----kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~  170 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCD-----AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  170 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEE-----EEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeee-----EEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhh
Confidence              45  3444556788989888754321     111223445566666654  556777766632               


Q ss_pred             ---cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC---------------cEEEEEC--------------
Q 047728          332 ---LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM---------------SICIWRR--------------  379 (474)
Q Consensus       332 ---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg---------------~i~iwd~--------------  379 (474)
                         .+.++|..+.+...++..+....-+.++++|+++++.+.+.               .+.++++              
T Consensus       171 y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e  250 (459)
T d1fwxa2         171 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  250 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             cceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence               25677888776666666665566788899999998876431               1333332              


Q ss_pred             ---------CCCc-eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          380 ---------KENE-HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       380 ---------~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                               +... ...+..+.. ......+.++||++.       +++++..+.++.|+|++.
T Consensus       251 ingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKy-------i~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         251 LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKH-------LCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             ETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSE-------EEEECTTSSBEEEEEGGG
T ss_pred             eCCceeecccccCCcceeEEEec-CCCCCceEECCCCCE-------EEEeCCcCCcEEEEEehh
Confidence                     2100 000011110 112356778888874       677888999999999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.82  E-value=0.07  Score=47.48  Aligned_cols=157  Identities=13%  Similarity=0.106  Sum_probs=92.3

Q ss_pred             eEEEecCCCCEEEEEECCC-----------cEEEEEcCCcceeee--e-eecCcceeEEEecCCC-eEEEeeCC-CcEEE
Q 047728          224 SSLSMSEDQNLLYSASWDK-----------TFKVWRTSDYKCLES--V-IAHDDAVNSIVAGFDG-LVFTGSAD-GTVKV  287 (474)
Q Consensus       224 ~~l~~~~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~--~-~~~~~~v~~v~~~~~~-~l~~~~~d-g~i~i  287 (474)
                      ...+...+++.++.|+.+.           .+.+||..+++-...  . ..+.......++.+++ +++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3444456888888888531           367899988764332  2 1233334456778888 55666544 57999


Q ss_pred             EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC------CcEEEeecCcccccc--e------eeee---
Q 047728          288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD------GLVNFWERELNLSHG--G------VLRG---  350 (474)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~--~------~~~~---  350 (474)
                      ||.....-    ..... ......-...+..+++++++.++.+      ..+.+||..+..-..  .      ....   
T Consensus       103 yd~~~~~w----~~~~~-~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3         103 YDSSSDSW----IPGPD-MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             EEGGGTEE----EECCC-CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             ecCccCcc----ccccc-ccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            99875321    11111 1122223457777899999988753      358899987653210  0      0000   


Q ss_pred             ----cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728          351 ----HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI  385 (474)
Q Consensus       351 ----~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~  385 (474)
                          .....+...++++.++.+..++.+.+++..+....
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence                01122333457888888888888888888776543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.15  Score=42.75  Aligned_cols=218  Identities=13%  Similarity=0.051  Sum_probs=119.8

Q ss_pred             cEEEEeCCc-cccccccCccCEEEEEec--CCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeE
Q 047728          131 NIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYI  206 (474)
Q Consensus       131 ~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (474)
                      .|+-.++.. ....+......+.++.|+  .+.|+-.. .++.|...+++.........                     
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~---------------------   69 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---------------------   69 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE---------------------
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE---------------------
Confidence            366555432 222222344567788886  55666554 45556666655432111000                     


Q ss_pred             EEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee--CC
Q 047728          207 EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS--AD  282 (474)
Q Consensus       207 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~--~d  282 (474)
                             .+.......+..|++.+.+..|+.+ ...+.|.+.++........+.........+++.|.. .++...  ..
T Consensus        70 -------~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~  142 (266)
T d1ijqa1          70 -------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP  142 (266)
T ss_dssp             -------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             -------EEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC
Confidence                   0111123456688888766666655 456789999988766555555555678899998854 554443  33


Q ss_pred             CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeec--ceeeEEEE
Q 047728          283 GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGH--KLAILCLV  359 (474)
Q Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~--~~~v~~~~  359 (474)
                      +.|.-.++.  +....    ......-.....+++++.++.|+.+ ...+.|...++...... ......  ......++
T Consensus       143 ~~I~r~~~d--Gs~~~----~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~~~~~~~~~~~p~~la  215 (266)
T d1ijqa1         143 AKIKKGGLN--GVDIY----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLA  215 (266)
T ss_dssp             CEEEEEETT--SCCEE----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEEE
T ss_pred             cceeEeccC--CCcee----cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-EEEeCCCcccccEEEE
Confidence            445444443  32111    1112233557899999977766665 55678888888654332 222221  12345566


Q ss_pred             ecCCEEEEEe-CCCcEEEEECCCCc
Q 047728          360 TAGNLVFSGS-ADMSICIWRRKENE  383 (474)
Q Consensus       360 ~~~~~l~sgs-~dg~i~iwd~~~~~  383 (474)
                      .++.+|+... .++.|...+..++.
T Consensus       216 v~~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         216 VFEDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EECCEEEEEECCCCeEEEEECCCCc
Confidence            6666666554 56777777766654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.61  E-value=0.024  Score=49.86  Aligned_cols=180  Identities=9%  Similarity=0.044  Sum_probs=96.1

Q ss_pred             eeEEEecCCCCEEEEEEC------------CCcEEEEEcCCcceee-eeeecCc-------ceeEEEe--cCCC--eEEE
Q 047728          223 ISSLSMSEDQNLLYSASW------------DKTFKVWRTSDYKCLE-SVIAHDD-------AVNSIVA--GFDG--LVFT  278 (474)
Q Consensus       223 V~~l~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~-~~~~~~~-------~v~~v~~--~~~~--~l~~  278 (474)
                      ..+|+..|++..+++++.            .|.|.++|+.+.+... .+.....       ....+..  .+++  +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446888888877766542            4889999987654321 2211111       1223322  3445  4555


Q ss_pred             ee---CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-----------------CCcEEEeec
Q 047728          279 GS---ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-----------------DGLVNFWER  338 (474)
Q Consensus       279 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----------------dg~i~v~d~  338 (474)
                      ..   ...+|.+|++....... ................+++..++.++++-..                 .+.+..||.
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l-~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEE-EEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EeccCCCceeEEEEEeCCCCeE-EEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            43   45668888876544321 1111222233355788998888888887321                 123334443


Q ss_pred             CcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728          339 ELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD  405 (474)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~  405 (474)
                      ...  ...........-+++++++++|+.+. ..+.|++|++.............-.+..-.+.+.++
T Consensus       196 ~~~--~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~  261 (340)
T d1v04a_         196 NDV--RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV  261 (340)
T ss_dssp             SCE--EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT
T ss_pred             Cce--EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecC
Confidence            321  11111123344578888988776554 678999999875432212222122344566777653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.17  Score=42.49  Aligned_cols=113  Identities=12%  Similarity=0.130  Sum_probs=73.2

Q ss_pred             EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728          225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT  304 (474)
Q Consensus       225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (474)
                      +.-.+|..+.|+.-+ ..++.++|+++.+.+..+.- ..+|.-=.|-.+..|+..+ +..|+-|+++...... ..+...
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~-k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPV-KMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCE-EEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCEEEEEc-CCceEEEcccCCCCch-hhhhhc
Confidence            344578777777665 56899999999998888765 4466666777666544443 4579999986443322 222222


Q ss_pred             eecccccEEEEEEcCCCCEEEEEc---C----CCcEEEeecCcc
Q 047728          305 LLKQECAVTALAISPDAAIVYCGS---S----DGLVNFWERELN  341 (474)
Q Consensus       305 ~~~~~~~v~~l~~~~~~~~l~~~~---~----dg~i~v~d~~~~  341 (474)
                      ..-....|..-..+++.++++..+   .    .|.+.+|..+..
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC
Confidence            222356788888888888776543   2    356778876544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.2  Score=42.11  Aligned_cols=197  Identities=11%  Similarity=0.119  Sum_probs=115.6

Q ss_pred             EcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728          118 AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD  194 (474)
Q Consensus       118 ~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  194 (474)
                      |..+.||.=+ ..++.|+|++  +.++.+.-.. .|.-..|- .+.|+-.... .|.-|+++..... .+-....     
T Consensus        72 P~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT~t-aVYHW~~~g~s~P-~k~fdR~-----  142 (327)
T d1utca2          72 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTDN-AVYHWSMEGESQP-VKMFDRH-----  142 (327)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEECSS-EEEEEESSSSCCC-EEEEECC-----
T ss_pred             CCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEcCC-ceEEEcccCCCCc-hhhhhhc-----
Confidence            5566665544 4579999965  4444444433 56566665 5666655544 6999999654321 1111000     


Q ss_pred             eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-------CCCcEEEEEcCCcceeeeeeecCcceeE
Q 047728          195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-------WDKTFKVWRTSDYKCLESVIAHDDAVNS  267 (474)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~  267 (474)
                                         ..+  ....|..-..+++.+.++..+       -.|.+.+|..+. +.-+.+.+|......
T Consensus       143 -------------------~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~  200 (327)
T d1utca2         143 -------------------SSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQ  200 (327)
T ss_dssp             -------------------GGG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEE
T ss_pred             -------------------ccc--cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEE
Confidence                               001  223455666677777665433       136788998765 455667777665555


Q ss_pred             EEecCCC----eEEEe---eCCCcEEEEEcccCCCceeeeeee---e---eecccccEEEEEEcCCCCEEEEEcCCCcEE
Q 047728          268 IVAGFDG----LVFTG---SADGTVKVWRRELQGKGTKHFFSQ---T---LLKQECAVTALAISPDAAIVYCGSSDGLVN  334 (474)
Q Consensus       268 v~~~~~~----~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~---~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  334 (474)
                      +.+..+.    .++.+   ...+.++|.++.........+...   .   .....+-..++.+++....++.-+.-|.|+
T Consensus       201 ~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~  280 (327)
T d1utca2         201 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH  280 (327)
T ss_dssp             ECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEE
Confidence            5443222    22222   223678898887543321111111   1   112345577899999999999999999999


Q ss_pred             EeecCcccccc
Q 047728          335 FWERELNLSHG  345 (474)
Q Consensus       335 v~d~~~~~~~~  345 (474)
                      +||++++..+.
T Consensus       281 lyDleTgt~i~  291 (327)
T d1utca2         281 LYDLETGTCIY  291 (327)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEEcccccEEE
Confidence            99999987653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.14  E-value=0.44  Score=45.04  Aligned_cols=70  Identities=6%  Similarity=0.065  Sum_probs=44.2

Q ss_pred             CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEE
Q 047728          159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLY  236 (474)
Q Consensus       159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~  236 (474)
                      .+|+.++.|+.|.-.|..+++............                            ...++   -.|  .+..++
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~----------------------------~~~~t---~~P~v~~~~vi  170 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKV----------------------------GSTLT---IAPYVVKDKVI  170 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----------------------------TCBCC---SCCEEETTEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceecccccccccc----------------------------ccccc---cCCcEECCeEE
Confidence            378999999999999999998766543321100                            00000   011  133455


Q ss_pred             EEEC------CCcEEEEEcCCcceeeeee
Q 047728          237 SASW------DKTFKVWRTSDYKCLESVI  259 (474)
Q Consensus       237 s~s~------dg~i~iwd~~~~~~~~~~~  259 (474)
                      .+..      .|.|+-+|+++|+.+-.+.
T Consensus       171 vg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         171 IGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             ECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EeeccccccccCceEEEECCCCcEEEEee
Confidence            5542      4889999999999987764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.07  E-value=0.4  Score=41.70  Aligned_cols=140  Identities=15%  Similarity=0.235  Sum_probs=80.9

Q ss_pred             cEEEEEcCC-cceeeeeee-------cCcceeEEEe--cCC-C--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc
Q 047728          243 TFKVWRTSD-YKCLESVIA-------HDDAVNSIVA--GFD-G--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE  309 (474)
Q Consensus       243 ~i~iwd~~~-~~~~~~~~~-------~~~~v~~v~~--~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (474)
                      +|.+|.+.. ...+..+..       ....+..+|+  ++. +  .+++...+|.+..|.+...................
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            577777642 222332221       1224667776  554 4  67778889999999886554432222233333455


Q ss_pred             ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-eee---ee-c---ceeeEEEEe--cCC-EEEE-EeCCCcEEEE
Q 047728          310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG-GVL---RG-H---KLAILCLVT--AGN-LVFS-GSADMSICIW  377 (474)
Q Consensus       310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~---~~-~---~~~v~~~~~--~~~-~l~s-gs~dg~i~iw  377 (474)
                      ..+..+.++.+...|+.+-++.-|..++.+...... ...   .+ +   ...-+++-.  ++. +|++ .-.+++..||
T Consensus       180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vy  259 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIY  259 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEE
Confidence            679999999999999999888777766654221111 111   01 1   112233332  222 4444 4467899999


Q ss_pred             ECCCC
Q 047728          378 RRKEN  382 (474)
Q Consensus       378 d~~~~  382 (474)
                      |....
T Consensus       260 dr~~~  264 (353)
T d1h6la_         260 ERQGQ  264 (353)
T ss_dssp             ESSTT
T ss_pred             ecCCC
Confidence            99864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.45  E-value=0.71  Score=40.05  Aligned_cols=198  Identities=11%  Similarity=0.108  Sum_probs=111.1

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEec------CCC-eEEEeeC--CC--cEEEEEcccCCCcee
Q 047728          230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG------FDG-LVFTGSA--DG--TVKVWRRELQGKGTK  298 (474)
Q Consensus       230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~------~~~-~l~~~~~--dg--~i~iwd~~~~~~~~~  298 (474)
                      |+..+++....++-|.+||+. |+.+..+.  .+.++.|..-      ... .+++++.  ++  .|.+|.+........
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            355677777777779999985 77777664  3455555433      122 3444442  23  577887753322111


Q ss_pred             eeee--eeeecccccEEEEEE--cCC-CC-EEEEEcCCCcEEEeecCccc---c----cceeeeecceeeEEEEecCCEE
Q 047728          299 HFFS--QTLLKQECAVTALAI--SPD-AA-IVYCGSSDGLVNFWERELNL---S----HGGVLRGHKLAILCLVTAGNLV  365 (474)
Q Consensus       299 ~~~~--~~~~~~~~~v~~l~~--~~~-~~-~l~~~~~dg~i~v~d~~~~~---~----~~~~~~~~~~~v~~~~~~~~~l  365 (474)
                      ....  .........+..+|+  ++. +. ++++...+|.+..|.+....   .    ...+..+....-+.+....+.|
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence            0000  011111234666666  664 44 56667788999888764321   1    1111112223334455567899


Q ss_pred             EEEeCCCcEEEEECCCC---ceEEEEeec--CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728          366 FSGSADMSICIWRRKEN---EHICLSMLT--GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       366 ~sgs~dg~i~iwd~~~~---~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                      +.+-++.-|..++....   ....+....  .....+-.|++-....    ...++|+|.-.|++..||+....
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~----~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD----GKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG----GCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC----CCeEEEEEcCCCCeEEEEecCCC
Confidence            99988877766665421   111222222  2456788888765432    23458888888999999998664

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=1.6  Score=36.19  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCC-----CcEEEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCC-----cEEEEECCCCceEEEE
Q 047728          320 DAAIVYCGSSD-----GLVNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADM-----SICIWRRKENEHICLS  388 (474)
Q Consensus       320 ~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg-----~i~iwd~~~~~~~~~~  388 (474)
                      ++.+++.++.+     .....||..+....... ...-.....+...++++++.|+.++     .|.+||+.+.+...+.
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  274 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT  274 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred             eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECC
Confidence            34555555443     24556666544222110 0111111233445788888877553     3788999988766554


Q ss_pred             ee
Q 047728          389 ML  390 (474)
Q Consensus       389 ~~  390 (474)
                      .+
T Consensus       275 ~~  276 (288)
T d1zgka1         275 RM  276 (288)
T ss_dssp             EC
T ss_pred             CC
Confidence            44

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=2  Score=37.52  Aligned_cols=137  Identities=7%  Similarity=-0.027  Sum_probs=82.2

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCccccccc--cCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFK--SNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~--~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      .|..++++++.|+... ++.+..++.........  .-...+..+.+.+..++....+|.+-++++.......... +. 
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~-~v-  164 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQ-NV-  164 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-SE-
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccC-Cc-
Confidence            5888999988877765 45577787554433222  2355788888998899999999999999998875321100 00 


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE-EEcCCcceeeeeeecCcceeEE
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV-WRTSDYKCLESVIAHDDAVNSI  268 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~~v~~v  268 (474)
                                              ..+ .-...+.+++|++.+..++++..++ ..+ -++.....+.........|.+|
T Consensus       165 ------------------------~~~-~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI  218 (381)
T d1xipa_         165 ------------------------TSF-DVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSV  218 (381)
T ss_dssp             ------------------------EEE-EECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred             ------------------------ceE-EecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEE
Confidence                                    000 0235688888988888888774332 211 1222111111111233467889


Q ss_pred             EecCCCeEE
Q 047728          269 VAGFDGLVF  277 (474)
Q Consensus       269 ~~~~~~~l~  277 (474)
                      .|..+..++
T Consensus       219 ~WL~~~~F~  227 (381)
T d1xipa_         219 TILSPQDFL  227 (381)
T ss_dssp             EESSSSEEE
T ss_pred             EEecCceEE
Confidence            998776433

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.58  E-value=2.3  Score=35.09  Aligned_cols=241  Identities=15%  Similarity=0.124  Sum_probs=117.9

Q ss_pred             cEEEEeCC---ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEE
Q 047728          131 NIRVWKNQ---REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIE  207 (474)
Q Consensus       131 ~v~vwd~~---~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (474)
                      +|+.|-..   ............|..|+--....+.-. ||.|..|-......+-...                      
T Consensus         5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~----------------------   61 (273)
T d1jtdb_           5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA----------------------   61 (273)
T ss_dssp             EEEEESSCCSSSTTCCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG----------------------
T ss_pred             EEEEECCCCCCCceeccccCCCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeee----------------------
Confidence            58888422   112122223456888888766655555 8999999766543221000                      


Q ss_pred             EeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEE
Q 047728          208 VRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKV  287 (474)
Q Consensus       208 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~i  287 (474)
                                .....|..++.-. ...++  -.|+.+..|.....-.+.........+..+.......++  -.|+.+..
T Consensus        62 ----------~~~~~v~~v~~G~-~~~~a--l~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~--~~dg~v~~  126 (273)
T d1jtdb_          62 ----------ATQSGVDAIAAGN-YHSLA--LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA--LKDGKVIA  126 (273)
T ss_dssp             ----------GGGSCCCEEEECS-SEEEE--EETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEE--EETTEEEE
T ss_pred             ----------cccccceEEecCC-Cceee--eeeeeeeccCCCcceeeccccccccceeEEeeecccccc--ccccccee
Confidence                      0223445554322 22222  248899999764322221111223345555544333222  25899999


Q ss_pred             EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEE
Q 047728          288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFS  367 (474)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  367 (474)
                      |........      .........|..++-.  ...++ ...++.++.|........ .........+..++......+.
T Consensus       127 ~g~~~~~~~------~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~~-~~~~~~~~~v~~Is~G~~h~~~  196 (273)
T d1jtdb_         127 WGDDSDGQT------TVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQT-TVPAEAQSGVDDVAGGIFHSLA  196 (273)
T ss_dssp             EECCTTSTT------SCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTSTT-SCCGGGSSSEEEEEECSSEEEE
T ss_pred             cccCCCCce------eeeccCCceEEEEecc--ceeee-eecccceeEeecccCCcc-cccccccCCccceeccceeeEE
Confidence            974432221      1111122334444332  22222 334778888865433221 1222234456777765555444


Q ss_pred             EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728          368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE  433 (474)
Q Consensus       368 gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~  433 (474)
                      -. ||.|+-|=......  +.........|..|+-....         .++.  .||.|..|--..
T Consensus       197 l~-dG~v~~WG~n~~Gq--l~~~~~~~~~v~~I~~G~~~---------~~~l--~~g~v~~WG~~~  248 (273)
T d1jtdb_         197 LK-DGKVIAWGDNRYKQ--TTVPTEALSGVSAIASGEWY---------SLAL--KNGKVIAWGSSR  248 (273)
T ss_dssp             EE-TTEEEEEECCTTST--TCCCGGGGSSCCEEEECSSC---------EEEE--ETTEEEEESTTC
T ss_pred             Ee-cCcEEEcCCCCCCc--cCCCccCCCCcEEEEeCcce---------EEEE--ECCEEEEECCCC
Confidence            44 89999996543221  11111223446666644332         2333  379999996443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.35  E-value=4.8  Score=34.42  Aligned_cols=143  Identities=8%  Similarity=0.033  Sum_probs=72.3

Q ss_pred             CCcEEEEEcccCCCceeeeeeee--eecccccEEEEEE--cCCCC-EEEEE---cCCCcEEEeecCcccccceeeee--c
Q 047728          282 DGTVKVWRRELQGKGTKHFFSQT--LLKQECAVTALAI--SPDAA-IVYCG---SSDGLVNFWERELNLSHGGVLRG--H  351 (474)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~--~~~~~-~l~~~---~~dg~i~v~d~~~~~~~~~~~~~--~  351 (474)
                      .|.|.++|+..............  .....-....+.+  .+++. +|++.   ....+|.+|++............  +
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            48899999875543222111110  1111123344443  44555 34443   24567888887544321111111  1


Q ss_pred             ----ceeeEEEEecCCEEEEEeC---------------CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccccc
Q 047728          352 ----KLAILCLVTAGNLVFSGSA---------------DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSRE  412 (474)
Q Consensus       352 ----~~~v~~~~~~~~~l~sgs~---------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  412 (474)
                          ...-+.+..++.+++|-..               -+...+|....++..   .....-...+.|+++|+++.    
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~---~~~~~l~~pNGI~~s~d~~~----  219 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR---VVAEGFDFANGINISPDGKY----  219 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE---EEEEEESSEEEEEECTTSSE----
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE---EEcCCCCccceeEECCCCCE----
Confidence                1112444456777776211               123344444444321   22222345789999999873    


Q ss_pred             ceEEEEEecCCCcEEEEEccCC
Q 047728          413 KRWILYSGSLDKSVKMWRVSEQ  434 (474)
Q Consensus       413 ~~~~l~s~s~Dg~i~vw~~~~~  434 (474)
                         ++++-+..+.|++|++...
T Consensus       220 ---lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         220 ---VYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             ---EEEEEGGGTEEEEEEECTT
T ss_pred             ---EEEEeCCCCeEEEEEeCCC
Confidence               5666677889999998753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.23  E-value=2.6  Score=39.10  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      |.|.-||+.+++.+..................+++++|+.||.++.+|.++++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence            568889999999888775432222222223345888999999999999998765

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=89.94  E-value=4.3  Score=33.30  Aligned_cols=219  Identities=12%  Similarity=0.123  Sum_probs=104.9

Q ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728          112 HIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL  189 (474)
Q Consensus       112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  189 (474)
                      .|..++......+.-. ||.|..|-.+  .++-.-......|..|..-....+.- .||.+..|............    
T Consensus        27 ~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~~~----  100 (273)
T d1jtdb_          27 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPA----  100 (273)
T ss_dssp             SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG----
T ss_pred             CcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeecccc----
Confidence            4777777655554444 8999999422  11211122233455666544433333 48999999765432211000    


Q ss_pred             CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728          190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV  269 (474)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  269 (474)
                                                  .....+..++....  ..+. -.|+.+..|.-...............|..+.
T Consensus       101 ----------------------------~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~  149 (273)
T d1jtdb_         101 ----------------------------EARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALD  149 (273)
T ss_dssp             ----------------------------GGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred             ----------------------------ccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEe
Confidence                                        01123344443322  2222 2478899997543222211111223344443


Q ss_pred             ecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee
Q 047728          270 AGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR  349 (474)
Q Consensus       270 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  349 (474)
                      -.  ...+....++.+..|-.......      .........|..++....... + - .||.|+.|-....-.+. ...
T Consensus       150 ~~--~~~~~~~~~g~~~~~G~~~~g~~------~~~~~~~~~v~~Is~G~~h~~-~-l-~dG~v~~WG~n~~Gql~-~~~  217 (273)
T d1jtdb_         150 GG--VYTALAVKNGGVIAWGDNYFGQT------TVPAEAQSGVDDVAGGIFHSL-A-L-KDGKVIAWGDNRYKQTT-VPT  217 (273)
T ss_dssp             EC--SSEEEEEETTEEEEEECCTTSTT------SCCGGGSSSEEEEEECSSEEE-E-E-ETTEEEEEECCTTSTTC-CCG
T ss_pred             cc--ceeeeeecccceeEeecccCCcc------cccccccCCccceeccceeeE-E-E-ecCcEEEcCCCCCCccC-CCc
Confidence            32  22233345788888875533321      112223446777766543322 2 2 37999999643322211 111


Q ss_pred             ecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728          350 GHKLAILCLVTAGNLVFSGSADMSICIWRRK  380 (474)
Q Consensus       350 ~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~  380 (474)
                      .....+..+.....+.+.- .||.|..|-..
T Consensus       218 ~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~~  247 (273)
T d1jtdb_         218 EALSGVSAIASGEWYSLAL-KNGKVIAWGSS  247 (273)
T ss_dssp             GGGSSCCEEEECSSCEEEE-ETTEEEEESTT
T ss_pred             cCCCCcEEEEeCcceEEEE-ECCEEEEECCC
Confidence            1122344555433333333 48999999543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.36  E-value=3.3  Score=38.55  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             CCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC
Q 047728          241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       241 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      .|.|.-+|+.+++.+.....+............+++++|+.||.++.+|.++++.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence            3678899999999988876543322222223344888999999999999998765

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=5.7  Score=32.41  Aligned_cols=105  Identities=11%  Similarity=0.066  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCC-----CcEEEeecCcccccceeeeecc-eeeEEEEecCCEEEEEeCC-----CcEEEEECCCCceEEEE
Q 047728          320 DAAIVYCGSSD-----GLVNFWERELNLSHGGVLRGHK-LAILCLVTAGNLVFSGSAD-----MSICIWRRKENEHICLS  388 (474)
Q Consensus       320 ~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~  388 (474)
                      +...++.|+.+     ..+..||..+............ .........+.+++.|+.+     ..+.++|..+.+...+.
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence            34455555443     3467777665432211111111 1112233345566666544     45677888777644322


Q ss_pred             eecCCccceEEEEEeeCCccccccceEEEEEecCCCc-----EEEEEccCC
Q 047728          389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS-----VKMWRVSEQ  434 (474)
Q Consensus       389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~-----i~vw~~~~~  434 (474)
                      ....-.... +++ ..+++        +++.|+.++.     |.+||+.+.
T Consensus       228 ~~p~~r~~~-~~~-~~~~~--------l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         228 PMKHRRSAL-GIT-VHQGR--------IYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CCSSCCBSC-EEE-EETTE--------EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CccCcccce-EEE-EECCE--------EEEEecCCCCeecceEEEEECCCC
Confidence            221111111 222 23555        6777765543     778888764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.95  E-value=9.9  Score=33.79  Aligned_cols=109  Identities=11%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             CcceeEEEecCCCeEEEeeC-CCcEEEEEcccCCCceeeeeeee--eecccccEEEEEEcCC---CCEEEEEcC------
Q 047728          262 DDAVNSIVAGFDGLVFTGSA-DGTVKVWRRELQGKGTKHFFSQT--LLKQECAVTALAISPD---AAIVYCGSS------  329 (474)
Q Consensus       262 ~~~v~~v~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~---~~~l~~~~~------  329 (474)
                      -...++|+|.|++.|++... .|.|++++...............  ....+.....|+|+|+   ..+|+....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            34668999999996666654 79999988664432111111111  1233467889999994   345544311      


Q ss_pred             -C----Cc--EEEeecCccccc----ce------eeeecceeeEEEEecCCEEEEEeC
Q 047728          330 -D----GL--VNFWERELNLSH----GG------VLRGHKLAILCLVTAGNLVFSGSA  370 (474)
Q Consensus       330 -d----g~--i~v~d~~~~~~~----~~------~~~~~~~~v~~~~~~~~~l~sgs~  370 (474)
                       +    ..  +..+........    ..      ....|...-+.+.+++.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    11  222322211100    00      112477777888888887776553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.30  E-value=13  Score=34.32  Aligned_cols=54  Identities=20%  Similarity=0.248  Sum_probs=37.8

Q ss_pred             CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC
Q 047728          242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK  295 (474)
Q Consensus       242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~  295 (474)
                      |.|.-||+.+++.+-.................+++++|+.||.++.+|.++++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcE
Confidence            468888999998888775533221122222345888999999999999998765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.79  E-value=11  Score=33.37  Aligned_cols=111  Identities=9%  Similarity=0.078  Sum_probs=62.2

Q ss_pred             ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee--------ecCcceeEEEecCC----CeEEEeeC-----
Q 047728          219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI--------AHDDAVNSIVAGFD----GLVFTGSA-----  281 (474)
Q Consensus       219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~v~~~~~----~~l~~~~~-----  281 (474)
                      .-..-++|+|.|++++|++--..|.|++++..+++......        .-+.....|+++|+    +.+.....     
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            34577899999999888776457999999877765432221        11245678999986    33333211     


Q ss_pred             --C----Cc--EEEEEcccCCCcee--eeeeee-eecccccEEEEEEcCCCCEEEEEcC
Q 047728          282 --D----GT--VKVWRRELQGKGTK--HFFSQT-LLKQECAVTALAISPDAAIVYCGSS  329 (474)
Q Consensus       282 --d----g~--i~iwd~~~~~~~~~--~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~  329 (474)
                        +    ..  +..+..........  ..+... ..........|.|.|++.++++.+.
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence              1    12  33333322221111  111111 1122345678999999987776654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.25  E-value=7.1  Score=30.54  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=82.5

Q ss_pred             CcEEEEEEcCC-EEEEeeCCCcEEEEe--CCcc--ccccc-------cCccCEEEEEec-C--CEEEEEeC-CCeEEEEe
Q 047728          111 GHIYSLAAAGD-LLYTGSDSKNIRVWK--NQRE--FSGFK-------SNSGLVKAIVIS-N--EKIFSGHQ-DGKIRVWK  174 (474)
Q Consensus       111 ~~i~~~~~~~~-~l~tgs~dg~v~vwd--~~~~--~~~~~-------~h~~~V~~i~~~-~--~~l~s~~~-dg~i~vwd  174 (474)
                      -.|.+++.+++ ...+|+....+.+|-  -++.  +..+.       -....|..+.+- +  .-++++.. .|.+++++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            35888888854 677888777777773  2221  11111       123345555553 2  24777776 88999998


Q ss_pred             cCCCCcceeeeecccC--------ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728          175 VSSKDASIHKRVGTLP--------TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV  246 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i  246 (474)
                      -..+............        ....++........+..+.-.......-..-+|+-+-+.|++++++.+-.||.-++
T Consensus       184 pkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~l  263 (313)
T d2hu7a1         184 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV  263 (313)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred             CCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchhe
Confidence            7766443322222111        11112222222223333322222222223446777889999999999999999999


Q ss_pred             EEcCCcceeeeee
Q 047728          247 WRTSDYKCLESVI  259 (474)
Q Consensus       247 wd~~~~~~~~~~~  259 (474)
                      |+  +|+.+....
T Consensus       264 F~--nGk~in~p~  274 (313)
T d2hu7a1         264 FI--DGERVEAPQ  274 (313)
T ss_dssp             EE--TTEEECCCS
T ss_pred             ee--cceEecCCC
Confidence            97  666665443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.12  E-value=13  Score=32.63  Aligned_cols=204  Identities=11%  Similarity=0.057  Sum_probs=102.5

Q ss_pred             CeeEEEecCCCCEEEEEE-C----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC-------------
Q 047728          222 AISSLSMSEDQNLLYSAS-W----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD-------------  282 (474)
Q Consensus       222 ~V~~l~~~~~~~~l~s~s-~----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d-------------  282 (474)
                      .+..++++|++++++.+- .    .-.|+++|+.+++.+..... ......++|.+|+ .|+....+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            345667899999887542 2    34699999999987653221 2223568899998 44433221             


Q ss_pred             ---CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCc--EEEeecCccccc-------cee
Q 047728          283 ---GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGL--VNFWERELNLSH-------GGV  347 (474)
Q Consensus       283 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~--i~v~d~~~~~~~-------~~~  347 (474)
                         ..|..+.+.......  ............+..+..+.++++++....   +..  +.+.|+......       ...
T Consensus       205 ~~~~~v~~h~lgt~~~~d--~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSED--ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             CCcceEEEEECCCCcccc--ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence               246666665432211  111112223345677888999998765332   333  344454332111       111


Q ss_pred             eeecceeeEEEEecCCEEEEEe----CCCcEEEEECCCCceEE-EEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728          348 LRGHKLAILCLVTAGNLVFSGS----ADMSICIWRRKENEHIC-LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL  422 (474)
Q Consensus       348 ~~~~~~~v~~~~~~~~~l~sgs----~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~  422 (474)
                      .........-+...+..++.-+    .++.|...++....... ...+..+...+..-.+...+..       +++.--.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~-------lvl~~~~  355 (430)
T d1qfma1         283 IDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-------LVLCYLH  355 (430)
T ss_dssp             ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTE-------EEEEEEE
T ss_pred             ecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCE-------EEEEEEc
Confidence            1112222222333444444332    34667667765432111 1223334444544444443331       3444445


Q ss_pred             CC--cEEEEEccCCC
Q 047728          423 DK--SVKMWRVSEQA  435 (474)
Q Consensus       423 Dg--~i~vw~~~~~~  435 (474)
                      |+  .|+++++..+.
T Consensus       356 ~~~~~l~v~~~~~~~  370 (430)
T d1qfma1         356 DVKNTLQLHDLATGA  370 (430)
T ss_dssp             TTEEEEEEEETTTCC
T ss_pred             CCEeEEEEEECCCCc
Confidence            54  47788887653