Citrus Sinensis ID: 047732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISSTSKLLLPLS
Secondary Structure (PSIPRED)
ccEEEEccccccccccEEEEEEcccccccccccccccccEEEEEEcccccccEEEEEEEEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEEEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccEEEEEEccEEEEcccccccccccEEEEEEcccccccEEEEEEEEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEEEEEEEEccccccEEccccccccccc
Coil and Loop (DISEMBL)
mqirikcgcgaesCREWAIIELQgfvevqpsFQDRLQNLVigelcrpssqesytftvgyheltgskvplkkpllvlkkvkcmdvdqscegssagtdleVVGIIRHRilfntrpqalisstsklllpls
Flexible Loop (DISEMBL)
mqirikcgcgaeSCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYheltgskvplkkpLLVLKKVKCMdvdqscegssagtdlevVGIIRHRIlfntrpqalisstsklllpls
Low Complexity Region (SEG)
MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSkvplkkpllvlkkvkCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISSTSKLLLPLS
Disordered region (IsUnstruct)
**IRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALI***********
Disordered Region (DISOPRED)
*QIR*****GAESCREWAIIELQGFVE************VIGELCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLK*******************LEVVGIIRHRILFNTRPQALISSTS*******
Disordered Region (DISEMBL)
MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISSTSKLLLPLS
Disordered Region (DISPRO)
MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKC***********AGTDLEVVGIIRHRILFNTRPQALISSTSKL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISSTSKLLLPLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
P0CG15	121	Chromosome transmission f	yes	no	0.851	0.900	0.344	8e-11
P0C6T1	121	Chromosome transmission f	yes	no	0.851	0.900	0.344	2e-10
P0CG13	121	Chromosome transmission f	yes	no	0.835	0.884	0.350	8e-10
P0CG11	121	Chromosome transmission f	yes	no	0.851	0.900	0.344	3e-09
Q54JL4	166	Putative uncharacterized	yes	no	0.882	0.680	0.328	4e-09
Q65ZA6	109	Chromosome transmission f	yes	no	0.671	0.788	0.376	5e-06

>sp|P0CG15|CTF8_MOUSE Chromosome transmission fidelity protein 8 homolog OS=Mus musculus GN=Chtf8 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)

Query: 9   CGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVP 68
            GAE   EW ++ELQG  E++  +   L   ++G+L   +++      VG+H L G  + 
Sbjct: 9   TGAEGLAEWVLMELQG--EIEARYSTGLAGNLLGDLHY-TTEGIPVLIVGHHILYGKTIH 65

Query: 69  LKKPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
           L+KP  VL  VK     Q C+  G   GT   V  +I+++ILF TRP+ +I++  K
Sbjct: 66  LEKPFAVL--VKHTPGKQDCDEPGRGTGTQYLVTALIKNKILFKTRPKPIITNVPK 119

Chromosome cohesion factor involved in sister chromatid cohesion and fidelity of chromosome transmission. Component of one of the cell nuclear antigen loader complexes, CTF18-replication factor C (CTF18-RFC), which consists of CTF18, CTF8, DCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex binds to single-stranded and primed DNAs and has weak ATPase activity that is stimulated the presence of primed DNA, replication protein A (RPA) and proliferating cell nuclear antigen (PCNA). The CTF18-RFC complex catalyzes the ATP-dependent loading of PCNA onto primed and gapped DNA. It also interacts with and stimulates POLH, which is suggestive of a protein network that coordinates DNA repair, recombination and chromosome cohesion reactions with replication fork progression.
Mus musculus (taxid: 10090)

>sp|P0C6T1|CTF8_RAT Chromosome transmission fidelity protein 8 homolog OS=Rattus norvegicus GN=Chtf8 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)

Query: 9   CGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVP 68
            GAE   EW ++ELQG  E++  +   L   ++G+L   +++      VG+H L G  + 
Sbjct: 9   TGAEGLAEWVLMELQG--EIEARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIH 65

Query: 69  LKKPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
           L+KP  VL  VK     Q C+  G   GT   V  +I+++ILF TRP+ +I++  K
Sbjct: 66  LEKPFAVL--VKHTPGKQDCDELGRETGTQYLVTALIKNKILFKTRPKPIITNVPK 119

Chromosome cohesion factor involved in sister chromatid cohesion and fidelity of chromosome transmission. Component of one of the cell nuclear antigen loader complexes, CTF18-replication factor C (CTF18-RFC), which consists of CTF18, CTF8, DCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex binds to single-stranded and primed DNAs and has weak ATPase activity that is stimulated the presence of primed DNA, replication protein A (RPA) and proliferating cell nuclear antigen (PCNA). The CTF18-RFC complex catalyzes the ATP-dependent loading of PCNA onto primed and gapped DNA. It also interacts with and stimulates POLH, which is suggestive of a protein network that coordinates DNA repair, recombination and chromosome cohesion reactions with replication fork progression.

Rattus norvegicus (taxid: 10116)

>sp|P0CG13|CTF8_HUMAN Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens GN=CHTF8 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 7/114 (6%)

Query: 11  AESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLK 70
           A    EW ++ELQG  E++  +   L   ++G+L   +++      VG+H L G  + L+
Sbjct: 11  AGGLAEWVLMELQG--EIEARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIHLE 67

Query: 71  KPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
           KP  VL  VK    DQ C+  G   GT   V  +I+ +ILF TRP+ +I+S  K
Sbjct: 68  KPFAVL--VKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPK 119

Chromosome cohesion factor involved in sister chromatid cohesion and fidelity of chromosome transmission. Component of one of the cell nuclear antigen loader complexes, CTF18-replication factor C (CTF18-RFC), which consists of CTF18, CTF8, DCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex binds to single-stranded and primed DNAs and has weak ATPase activity that is stimulated the presence of primed DNA, replication protein A (RPA) and proliferating cell nuclear antigen (PCNA). The CTF18-RFC complex catalyzes the ATP-dependent loading of PCNA onto primed and gapped DNA. It also interacts with and stimulates POLH, which is suggestive of a protein network that coordinates DNA repair, recombination and chromosome cohesion reactions with replication fork progression.

Homo sapiens (taxid: 9606)

>sp|P0CG11|CTF8_BOVIN Chromosome transmission fidelity protein 8 homolog OS=Bos taurus GN=CHTF8 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 7/116 (6%)

Query: 9   CGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVP 68
            GA    EW ++ELQG +E + S    L   ++G+L   +++      VG+H L G  + 
Sbjct: 9   AGAGGLAEWVLMELQGEIEARHS--TGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIH 65

Query: 69  LKKPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
           L+KP  VL  VK    +Q C+  G  +GT   V  +I+++ILF TRP+ +I++  K
Sbjct: 66  LEKPFAVL--VKHTPGEQDCDELGCESGTRYLVTALIKNKILFKTRPKPIITNVPK 119

Chromosome cohesion factor involved in sister chromatid cohesion and fidelity of chromosome transmission. Component of one of the cell nuclear antigen loader complexes, CTF18-replication factor C (CTF18-RFC), which consists of CTF18, CTF8, DCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex binds to single-stranded and primed DNAs and has weak ATPase activity that is stimulated the presence of primed DNA, replication protein A (RPA) and proliferating cell nuclear antigen (PCNA). The CTF18-RFC complex catalyzes the ATP-dependent loading of PCNA onto primed and gapped DNA. It also interacts with and stimulates POLH, which is suggestive of a protein network that coordinates DNA repair, recombination and chromosome cohesion reactions with replication fork progression.

Bos taurus (taxid: 9913)

>sp|Q54JL4|Y7715_DICDI Putative uncharacterized protein DDB_G0287975 OS=Dictyostelium discoideum GN=DDB_G0287975 PE=4 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 24/137 (17%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCR-PSSQESYTFTVGY 59
           MQI IK        +EW I++LQG +E    +   L+N  +G L + P++++ ++F +G 
Sbjct: 1   MQIFIKESTNK---KEWFILDLQGHLE----YTGDLKNETLGILTKKPNTKDDFSFQIGN 53

Query: 60  HELTGSKVPLKKPLLVL-----------KKVKCMDVDQSCEGSSAGTDLEV----VGIIR 104
             L G +VPLKKPLLV+                M VD   +      D EV     GI  
Sbjct: 54  SVLVGKRVPLKKPLLVIKKSKLNNNNNSNNNNKMAVDNK-DNKDNEKDKEVEYSIEGICN 112

Query: 105 HRILFNTRPQALISSTS 121
            +I F TRP   I  +S
Sbjct: 113 DKIQFTTRPTTFIPQSS 129

Dictyostelium discoideum (taxid: 44689)

>sp|Q65ZA6|CTF8_SCHPO Chromosome transmission fidelity protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctf8 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 25  FVEVQPSFQDRLQNLVIGELC----RPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVK 80
            VEVQ + + +  +L IG+L     + S ++  T TVG   + G    LKKPL VL+K  
Sbjct: 16  LVEVQATLERKADSLHIGDLKIIKEKNSEKKKATLTVGNQYMEGVVESLKKPLAVLQKTN 75

Query: 81  CMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRP 113
              VD     SS   +L+   IIR RI F++RP
Sbjct: 76  ADPVDVY---SSPSHELKCCSIIRERIRFSSRP 105

Essential for the fidelity of chromosome transmission. Required for the DNA replication block checkpoint. Replication factor C (RFC) complex has an essential but redundant activity in sister chromatid cohesion establishment. An RFC-like complex (ctf18-RFC) is formed where ctf18 replaces rfc1 in the RFC complex along with the association of dcc1 and ctf8. This complex is required for efficient establishment of chromosome cohesion during S-phase. Acts as a PCNA loader, loading PCNA onto primed templates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
147778236	305	hypothetical protein VITISV_023404 [Viti	0.960	0.403	0.690	1e-45
225470696	140	PREDICTED: putative uncharacterized prot	0.968	0.885	0.685	9e-45
356530876	137	PREDICTED: putative uncharacterized prot	0.882	0.824	0.677	2e-39
255646976	137	unknown [Glycine max]	0.875	0.817	0.675	6e-39
356559833	137	PREDICTED: chromosome transmission fidel	0.882	0.824	0.661	2e-38
255539491	137	conserved hypothetical protein [Ricinus	0.914	0.854	0.756	1e-36
449451767	140	PREDICTED: putative uncharacterized prot	0.968	0.885	0.661	4e-35
224134749	146	predicted protein [Populus trichocarpa]	0.968	0.849	0.593	4e-32
242044268	141	hypothetical protein SORBIDRAFT_02g02073	0.921	0.836	0.555	1e-28
414884942	140	TPA: hypothetical protein ZEAMMB73_60598	0.921	0.842	0.552	7e-28

>gi|147778236|emb|CAN74035.1| hypothetical protein VITISV_023404 [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 105/126 (83%), Gaps = 3/126 (2%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
           MQI++KC CG E C EWAI+ELQG VEVQPSFQ  +QNL IG+LCRPSSQE+YTFTVGYH
Sbjct: 1   MQIQVKCSCGEEKCPEWAIVELQGVVEVQPSFQGTVQNLEIGQLCRPSSQENYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISST 120
           EL+GSKVPLKKP +VLKK + +D +Q+ +  S+  DLEVVGIIRHRILF +RP+ALISS 
Sbjct: 61  ELSGSKVPLKKPFVVLKKTRHLDANQNGDSKSSSVDLEVVGIIRHRILFKSRPKALISS- 119

Query: 121 SKLLLP 126
             +L+P
Sbjct: 120 --ILIP 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470696|ref|XP_002263439.1| PREDICTED: putative uncharacterized protein DDB_G0287975 [Vitis vinifera] gi|297741055|emb|CBI31786.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 102/124 (82%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
           MQI++KC CG E C EWAI+ELQG VEVQPSFQ  +QNL IG+LCRPSSQE+YTFTVGYH
Sbjct: 1   MQIQVKCSCGEEKCPEWAIVELQGVVEVQPSFQGTVQNLEIGQLCRPSSQENYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISST 120
           EL+GSKVPLKKP +VLKK + +D +Q+ +  S+  DLEVVGIIRHRILF +RP+ALIS  
Sbjct: 61  ELSGSKVPLKKPFVVLKKTRHLDANQNGDSKSSSVDLEVVGIIRHRILFKSRPKALISKP 120

Query: 121 SKLL 124
             L+
Sbjct: 121 QPLV 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530876|ref|XP_003534005.1| PREDICTED: putative uncharacterized protein DDB_G0287975-like [Glycine max]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 92/118 (77%), Gaps = 5/118 (4%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
           MQIR++C CG  SC EW +IELQG VE QP F D LQNL IG LCRPSSQE YTFTVGYH
Sbjct: 1   MQIRVRCNCGEGSCEEWGVIELQGVVEPQPGFHDSLQNLHIGTLCRPSSQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALIS 118
           ELTGSKVPLKKP++VLKKVK  D +  C+      +L+VVG+IRH+ILF  RP+ALIS
Sbjct: 61  ELTGSKVPLKKPMVVLKKVKHPDGESGCK-----VELQVVGVIRHKILFKNRPKALIS 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646976|gb|ACU23957.1| unknown [Glycine max]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 91/117 (77%), Gaps = 5/117 (4%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
           MQIR++C CG  SC EW +IELQG VE QP F D LQNL IG LCRPSSQE YTFTVGYH
Sbjct: 1   MQIRVRCNCGEGSCEEWGVIELQGVVEPQPGFHDSLQNLHIGTLCRPSSQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALI 117
           ELTGSKVPLKKP++VLKKVK  D +  C+      +L+VVG+IRH+ILF  RP+ALI
Sbjct: 61  ELTGSKVPLKKPMVVLKKVKHPDGESGCK-----VELQVVGVIRHKILFKNRPKALI 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559833|ref|XP_003548201.1| PREDICTED: chromosome transmission fidelity protein 8 homolog [Glycine max]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 91/118 (77%), Gaps = 5/118 (4%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
           MQIR++C CG  +C EW +IELQG VE QP F D L NL IG LCRPSSQE YTFTVGYH
Sbjct: 1   MQIRVRCNCGEGNCEEWGVIELQGVVEPQPGFHDSLPNLQIGTLCRPSSQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALIS 118
           ELTGSKVPLKKP++VLKKVK  D +  C+      +L+VVG+IRH+ILF  RP+ALIS
Sbjct: 61  ELTGSKVPLKKPMVVLKKVKHPDGESGCK-----VELQVVGVIRHKILFKNRPKALIS 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539491|ref|XP_002510810.1| conserved hypothetical protein [Ricinus communis] gi|223549925|gb|EEF51412.1| conserved hypothetical protein [Ricinus communis]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 102/119 (85%), Gaps = 2/119 (1%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
           MQI++KC CGAE C EWAI+ELQG VEVQP+ QDRLQNLVIG+LCR SSQE+YTFTVGYH
Sbjct: 1   MQIQVKCSCGAE-CPEWAIVELQGVVEVQPALQDRLQNLVIGQLCRNSSQENYTFTVGYH 59

Query: 61  ELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAG-TDLEVVGIIRHRILFNTRPQALIS 118
           ELTGSKV LKKPLLVLKKVK MDVDQ  +  SA   +L+V+GIIRH+ILF  RP+ALIS
Sbjct: 60  ELTGSKVTLKKPLLVLKKVKYMDVDQGSDDQSASKVELDVIGIIRHKILFKNRPKALIS 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451767|ref|XP_004143632.1| PREDICTED: putative uncharacterized protein DDB_G0287975-like [Cucumis sativus] gi|449506480|ref|XP_004162761.1| PREDICTED: putative uncharacterized protein DDB_G0287975-like [Cucumis sativus]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 97/124 (78%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
           M+I++KC CG   C EWA++ELQG VE Q +FQDRLQNL IG LCRPS+QE YTFTVGYH
Sbjct: 1   MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISST 120
           ELTGSK+ LKKPLLVLKK + +D DQS +  S   +LEV+GIIR RILF TRP+ALIS  
Sbjct: 61  ELTGSKISLKKPLLVLKKTRSVDEDQSSDTKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 SKLL 124
             L+
Sbjct: 121 QPLV 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134749|ref|XP_002321897.1| predicted protein [Populus trichocarpa] gi|118482409|gb|ABK93127.1| unknown [Populus trichocarpa] gi|222868893|gb|EEF06024.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 99/133 (74%), Gaps = 9/133 (6%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSF-QDRLQNLVIGELCR--PSSQESYTFTV 57
           MQI++KC CGAE+CREW ++ELQG VE+ PSF Q  LQNL IG+LCR   SSQES+TFTV
Sbjct: 1   MQIQVKCSCGAENCREWVVVELQGTVELNPSFFQTHLQNLQIGQLCRLSSSSQESFTFTV 60

Query: 58  GYHELTGSKVP-LKKPLLVLKKVKCMDVDQSCEGS-----SAGTDLEVVGIIRHRILFNT 111
           GYHELTGSKV   K  L++ K  + MDVDQS + +     S+  +L+V+GIIRH+ILF T
Sbjct: 61  GYHELTGSKVTLKKPLLVLKKVKRFMDVDQSDDNNKGDLPSSKVELDVIGIIRHKILFKT 120

Query: 112 RPQALISSTSKLL 124
           RP+ALIS    L+
Sbjct: 121 RPKALISKLQPLV 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242044268|ref|XP_002460005.1| hypothetical protein SORBIDRAFT_02g020730 [Sorghum bicolor] gi|241923382|gb|EER96526.1| hypothetical protein SORBIDRAFT_02g020730 [Sorghum bicolor]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 85/126 (67%), Gaps = 8/126 (6%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELC------RPSSQESYT 54
           MQIR++CGCG  SC EWA++ELQG V+ Q SF   ++ L IG LC        S Q  YT
Sbjct: 1   MQIRVQCGCGESSCPEWAVVELQGVVQPQASFAGDIRGLHIGRLCSAPSPSSSSKQAGYT 60

Query: 55  FTVGYHELTGSKVPLKKPLLVL--KKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTR 112
           FTVGYHEL G+KV LKKPLLVL  KKV     +Q    ++   +LEV+GIIRH+ILF  R
Sbjct: 61  FTVGYHELAGTKVTLKKPLLVLRKKKVNAGCGEQEPPAAAEEVELEVIGIIRHKILFKDR 120

Query: 113 PQALIS 118
           P+ALIS
Sbjct: 121 PKALIS 126

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414884942|tpg|DAA60956.1| TPA: hypothetical protein ZEAMMB73_605984 [Zea mays]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 85/125 (68%), Gaps = 7/125 (5%)

Query: 1   MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELC------RPSSQESYT 54
           MQIR++C CG  SC EWA++ELQG V+ Q SF   ++ L IG LC        SS+  +T
Sbjct: 1   MQIRVQCACGESSCPEWAVVELQGVVQPQASFAGDIRGLHIGRLCSSPSPASASSKAGFT 60

Query: 55  FTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAG-TDLEVVGIIRHRILFNTRP 113
           FTVGYHEL G+KV LKKPLLVL+K K     Q  E  +A   +LEV+GIIRH+ILF  RP
Sbjct: 61  FTVGYHELAGTKVTLKKPLLVLRKKKVNAGAQEEEPPTAAEVELEVIGIIRHKILFKDRP 120

Query: 114 QALIS 118
           +ALIS
Sbjct: 121 KALIS 125

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2145081	145	AT5G52220 [Arabidopsis thalian	0.929	0.820	0.539	5.7e-27
MGI|MGI:2443370	121	Chtf8 "CTF8, chromosome transm	0.921	0.975	0.286	1.4e-07
RGD|1306894	121	Chtf8 "CTF8, chromosome transm	0.906	0.958	0.290	1.8e-07
UNIPROTKB|P0CG11	121	CHTF8 "Chromosome transmission	0.906	0.958	0.290	1e-06
UNIPROTKB|P0CG13	121	CHTF8 "Chromosome transmission	0.796	0.842	0.293	1.3e-06
ZFIN|ZDB-GENE-050419-148	124	chtf8 "CTF8, chromosome transm	0.921	0.951	0.256	0.00035

TAIR|locus:2145081 AT5G52220 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 68/126 (53%), Positives = 78/126 (61%)

Query:     1 MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRP-SSQESYTFTVGY 59
             M+IR+KC CG E C EWAI+ELQG VE Q SFQ  +QNL IG LC   SSQ +YTFTVGY
Sbjct:     1 MEIRVKCRCGEEECSEWAIVELQGVVETQASFQGSIQNLEIGRLCHSDSSQGTYTFTVGY 60

Query:    60 HELTGSXXXXXXXXXXXXXXXCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISS 119
             HEL GS                +  D   E S   T+LEVVGIIR +ILF TRP+ LIS 
Sbjct:    61 HELVGSKVTLKKPLLVLKK---LQFD---EVSGKATELEVVGIIRTKILFKTRPKPLISG 114

Query:   120 TSKLLL 125
              + L L
Sbjct:   115 NNNLSL 120

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2443370 Chtf8 "CTF8, chromosome transmission fidelity factor 8" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 35/122 (28%), Positives = 56/122 (45%)

Query:     1 MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
             +QI I    GAE   EW ++ELQG  E++  +   L   ++G+L   +++      VG+H
Sbjct:     2 VQIVIS-STGAEGLAEWVLMELQG--EIEARYSTGLAGNLLGDL-HYTTEGIPVLIVGHH 57

Query:    61 ELTGSXXXXXXXXXXXXXXXCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALISST 120
              L G                    D    G   GT   V  +I+++ILF TRP+ +I++ 
Sbjct:    58 ILYGKTIHLEKPFAVLVKHTPGKQDCDEPGRGTGTQYLVTALIKNKILFKTRPKPIITNV 117

Query:   121 SK 122
              K
Sbjct:   118 PK 119

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1306894 Chtf8 "CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 36/124 (29%), Positives = 58/124 (46%)

Query:     1 MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
             +QI I    GAE   EW ++ELQG  E++  +   L   ++G+L   +++      VG+H
Sbjct:     2 VQIVIS-STGAEGLAEWVLMELQG--EIEARYSTGLAGNLLGDL-HYTTEGIPVLIVGHH 57

Query:    61 ELTGSXXXXXXXXXXXXXXXCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALIS 118
              L G                     Q C+  G   GT   V  +I+++ILF TRP+ +I+
Sbjct:    58 ILYGKIIHLEKPFAVLVKHT--PGKQDCDELGRETGTQYLVTALIKNKILFKTRPKPIIT 115

Query:   119 STSK 122
             +  K
Sbjct:   116 NVPK 119

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|P0CG11 CHTF8 "Chromosome transmission fidelity protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 36/124 (29%), Positives = 59/124 (47%)

Query:     1 MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
             +QI I    GA    EW ++ELQG +E + S    L   ++G+L   +++      VG+H
Sbjct:     2 VQIVIS-SAGAGGLAEWVLMELQGEIEARHS--TGLAGNLLGDL-HYTTEGIPVLIVGHH 57

Query:    61 ELTGSXXXXXXXXXXXXXXXCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALIS 118
              L G                    +Q C+  G  +GT   V  +I+++ILF TRP+ +I+
Sbjct:    58 ILYGKIIHLEKPFAVLVKHT--PGEQDCDELGCESGTRYLVTALIKNKILFKTRPKPIIT 115

Query:   119 STSK 122
             +  K
Sbjct:   116 NVPK 119

GO:0005634 "nucleus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|P0CG13 CHTF8 "Chromosome transmission fidelity protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 32/109 (29%), Positives = 51/109 (46%)

Query:    16 EWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSXXXXXXXXXX 75
             EW ++ELQG  E++  +   L   ++G+L   +++      VG+H L G           
Sbjct:    16 EWVLMELQG--EIEARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIHLEKPFAV 72

Query:    76 XXXXXCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
                      DQ C+  G   GT   V  +I+ +ILF TRP+ +I+S  K
Sbjct:    73 LVKHT--PGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPK 119

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-050419-148 chtf8 "CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 32/125 (25%), Positives = 55/125 (44%)

Query:     1 MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYH 60
             +QI I    G ES  EW ++ELQG  E+       L   ++G+L   + +      VG+H
Sbjct:     2 VQIVISSNAG-ESPAEWLLVELQG--EMVSRQNTGLAGNLMGDL-HYTKEGVPILIVGHH 57

Query:    61 ELTGSXXXXXXXXXXXXXXXCM--DVDQSCE-GSSAGTDLEVVGIIRHRILFNTRPQALI 117
              L G                 +  D +++ E      T   V  +I+ +++F TRP+ +I
Sbjct:    58 ILYGKQVKLEKPFAVLMKHSGLPQDAEENMETNQEKPTSYTVSALIKKKLIFKTRPKPII 117

Query:   118 SSTSK 122
             ++  K
Sbjct:   118 TNVPK 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       113   0.00091  102 3  11 22  0.44    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.63u 0.12s 9.75t   Elapsed:  00:00:01
  Total cpu time:  9.63u 0.12s 9.75t   Elapsed:  00:00:01
  Start:  Mon May 20 17:08:52 2013   End:  Mon May 20 17:08:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CG15	CTF8_MOUSE	No assigned EC number	0.3448	0.8515	0.9008	yes	no
P0CG13	CTF8_HUMAN	No assigned EC number	0.3508	0.8359	0.8842	yes	no
P0CG11	CTF8_BOVIN	No assigned EC number	0.3448	0.8515	0.9008	yes	no
P0C6T1	CTF8_RAT	No assigned EC number	0.3448	0.8515	0.9008	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00009212001	SubName- Full=Chromosome undetermined scaffold_225, whole genome shotgun sequence; (133 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00012489001	SubName- Full=Chromosome undetermined scaffold_385, whole genome shotgun sequence; (378 aa)					•		•		0.540
	GSVIVG00030599001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa)					•				0.424
	GSVIVG00027060001	SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (354 aa)					•		•		0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam09696	106	pfam09696, Ctf8, Ctf8	1e-30

>gnl|CDD|220348 pfam09696, Ctf8, Ctf8

 Score =  104 bits (263), Expect = 1e-30
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 16  EWAIIELQGFVEVQPSFQDRLQNLVIGELCRP-SSQESYTFTVG-YHELTGSKVPLKKPL 73
             AI+ELQG +E+  S  D L ++ IG+L  P    +  T  VG    LTG  V L KPL
Sbjct: 8   GLAILELQGTLELPDSESDGLDSVRIGDLEFPTKDMKKVTLYVGKKQRLTGKVVKLDKPL 67

Query: 74  LVLKKVKCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRP 113
            VL+K    +  Q      +G +LEVV II+++I+F TRP
Sbjct: 68  GVLRKRDKDEDMQ----EESGEELEVVDIIKYKIIFKTRP 103

Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex which is a DNA clamp loader involved in sister chromatid cohesion. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PF09696	122	Ctf8: Ctf8; InterPro: IPR018607 Ctf8 (chromosome t	100.0
KOG4487	110	consensus Uncharacterized conserved protein [Funct	99.97

>PF09696 Ctf8: Ctf8; InterPro: IPR018607 Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex which is a DNA clamp loader involved in sister chromatid cohesion

Probab=100.00  E-value=2.6e-39  Score=236.42  Aligned_cols=103  Identities=38%  Similarity=0.563  Sum_probs=89.3

Q ss_pred             CCceEEEEeeeeeecCCC------------ccccccceeeeeeecc-CCCCcEEEEEc-eEEEEEeEeccCCCeEEEEEe
Q 047732           14 CREWAIIELQGFVEVQPS------------FQDRLQNLVIGELCRP-SSQESYTFTVG-YHELTGSKVPLKKPLLVLKKV   79 (128)
Q Consensus        14 ~~e~~llElQG~Le~~~~------------~~~~~~~~~iG~L~~~-~~~~~~~L~IG-~h~L~GkvvkL~kPLaVL~k~   79 (128)
                      +.|||||||||+||.+..            .+..++++.||+|+|+ ..+++|+|+|| ||+|+|||++|+||||||||+
T Consensus         6 p~~~~llELQG~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~L~~d~~~~~~~~L~IG~~q~L~Gkv~kL~kPLaVLrk~   85 (122)
T PF09696_consen    6 PSEWALLELQGTLELPDEDVDEDETDEDSDEDEGLDGVPIGRLHFDSKWMKRVTLYIGKHQRLEGKVVKLKKPLAVLRKR   85 (122)
T ss_pred             CCCeEEEEEeeEEECCCccccccccccccccCCccCCcEEEEEEecCCCCCeEEEEECCCEEEEEEEeccCCCEEEEEEc
Confidence            679999999999999972            1257999999999983 34678999999 999999999999999999999


Q ss_pred             ecCCCCcccCCCCCcceEEEEEeeeeeeecCCCCccc
Q 047732           80 KCMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQAL  116 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~e~~vv~IIr~KiiFk~RP~PI  116 (128)
                      ..++.++++..++..++|+|+|||||||+||+||+||
T Consensus        86 ~~~~~~~~~~~~~~~~e~evv~II~~KiiFk~RP~PI  122 (122)
T PF09696_consen   86 KSNDDSSDDSEEESSTEYEVVDIIRYKIIFKTRPKPI  122 (122)
T ss_pred             ccCcccccccCCCCCeEEEEEEeeeeeeEccCCCCCC
Confidence            8754444445566789999999999999999999997

>KOG4487 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=4.9e-32  Score=192.35  Aligned_cols=110  Identities=27%  Similarity=0.403  Sum_probs=98.4

Q ss_pred             CeEEEEcCCCCCCCCceEEEEeeeeeecCCCccccccceeeeeeeccCCCCcEEEEEceEEEEEeEeccCCCeEEEEEee
Q 047732            1 MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVK   80 (128)
Q Consensus         1 M~i~i~~~~~~~~~~e~~llElQG~Le~~~~~~~~~~~~~iG~L~~~~~~~~~~L~IG~h~L~GkvvkL~kPLaVL~k~~   80 (128)
                      |-|.++|.|+...|.||++|||||.+|.++++.++.++..+|++++.+ ...+++.+|+|.|+|++.|+++||+|++|.+
T Consensus         1 ~~~~~~~~~~~~~~~~~m~~ElqG~~e~q~~f~gs~ds~~~Gr~c~~D-~~q~~~~~G~~~l~G~v~k~~rpLlvv~Kld   79 (110)
T KOG4487|consen    1 LTQSREKQTTVITPLGMMMLELQGELELQKDFLGSRDSPNEGRFCEQD-GEQTLIRFGSLQLDGEVGKKQRPLLVVTKLD   79 (110)
T ss_pred             CceeeecccccccchHhhhhhhccccccchhhcccccCccccceeccC-CCeEEEEEeeEEEeeeeeeecceeEEEEeeh
Confidence            568899999999999999999999999999777889999999999864 4568899999999999999999999999987


Q ss_pred             cCCCCcccCCCCCcceEEEEEeeeeeeecCCCCcccc
Q 047732           81 CMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRPQALI  117 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~e~~vv~IIr~KiiFk~RP~PIi  117 (128)
                      -+.      -++..++++|+||||||++||+||+|+|
T Consensus        80 ~~h------~~~k~~~~evv~Vir~KviFKtRP~Pl~  110 (110)
T KOG4487|consen   80 VMH------FNSKDNKVEVVDVIRYKVIFKTRPLPLM  110 (110)
T ss_pred             hhh------hcCCCceEEeeeeEeEEEEeccCCCCCC
Confidence            632      1245789999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 24/141 (17%), Positives = 38/141 (26%), Gaps = 45/141 (31%)

Query: 8   GCG-----AESCREWAIIELQGF---------VEVQPSFQDRLQNL---VIGELCRPSSQ 50
           G G      + C  + +     F              +  + LQ L   +       S  
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 51  ESYTFTVGYHELTGSKV------PLKKPLLVLKKV---KCMDV-DQSCEGSSAGTDLEVV 100
            S    +  H +           P +  LLVL  V   K  +  + SC            
Sbjct: 220 -SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------------ 266

Query: 101 GIIRHRILFNTRPQALISSTS 121
                +IL  TR + +    S
Sbjct: 267 -----KILLTTRFKQVTDFLS 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00